Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FAM41C	284593	broad.mit.edu	37	1	809511	809511	+	RNA	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:809511G>A	uc001abt.3	-	2		c.1082C>T				NR_027055				Homo sapiens family with sequence similarity 41, member C, mRNA (cDNA clone IMAGE:5201580), partial cds.												0						GAATAATACGGCCATCCAGGA	0.512													8	66					0	0	0.000274275	0	0
CPSF3L	54973	broad.mit.edu	37	1	1249237	1249237	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:1249237A>G	uc001aee.1	-	9	890	c.832T>C	c.(832-834)TAC>CAC	p.Y278H	CPSF3L_uc009vjy.1_RNA|CPSF3L_uc001aef.1_Missense_Mutation_p.Y284H|CPSF3L_uc009vjz.1_Missense_Mutation_p.Y256H|CPSF3L_uc010nyj.1_Missense_Mutation_p.Y249H|CPSF3L_uc001aeg.1_Missense_Mutation_p.Y154H|CPSF3L_uc001aeh.1_Missense_Mutation_p.Y177H|CPSF3L_uc001aei.1_Missense_Mutation_p.Y180H|CPSF3L_uc001aej.1_Missense_Mutation_p.Y105H|CPSF3L_uc001aek.1_Missense_Mutation_p.Y20H	NM_017871	NP_060341	Q5TA45	INT11_HUMAN	cleavage and polyadenylation specific factor	278						Golgi apparatus|nucleus	hydrolase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.71e-35)|OV - Ovarian serous cystadenocarcinoma(86;4.35e-21)|Colorectal(212;0.000166)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.00235)|BRCA - Breast invasive adenocarcinoma(365;0.00255)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0349)|Lung(427;0.201)		AGCTTGTAGTAGTGGTTGGCC	0.577													6	62					0	0	0.00116845	0	0
MEGF6	1953	broad.mit.edu	37	1	3511917	3511917	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:3511917C>T	uc001akl.2	-	3	588	c.361G>A	c.(361-363)GAG>AAG	p.E121K		NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	121	EMI.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		AGGCAGCCCTCCTCGTCGGGC	0.667													7	46					0	0	0.000274275	0	0
TPRG1L	127262	broad.mit.edu	37	1	3542403	3542404	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:3542403_3542404AG>GA	uc001akm.2	+	3	501_502	c.420_421AG>GA	c.(418-423)GTAGAC>GTGAAC	p.D141N	TPRG1L_uc009vlj.2_Intron	NM_182752	NP_877429	Q5T0D9	TPRGL_HUMAN	tumor protein p63 regulated 1-like	141						cell junction|synaptic vesicle					0	all_cancers(77;0.0119)|all_epithelial(69;0.00481)|Ovarian(185;0.0634)|Lung NSC(156;0.162)|all_lung(157;0.172)	all_epithelial(116;7.37e-22)|all_lung(118;8.23e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.41e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.83e-22)|GBM - Glioblastoma multiforme(42;4.77e-14)|Colorectal(212;1.12e-05)|COAD - Colon adenocarcinoma(227;5.61e-05)|Kidney(185;0.000351)|BRCA - Breast invasive adenocarcinoma(365;0.000688)|KIRC - Kidney renal clear cell carcinoma(229;0.00553)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.201)		TCAACGCAGTAGACACCATTTC	0.53													10	32					0	0	6.4e-05	0	0
H6PD	9563	broad.mit.edu	37	1	9324115	9324115	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:9324115C>T	uc001apt.2	+	5	1836	c.1563C>T	c.(1561-1563)TTC>TTT	p.F521F		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	521	Glucose 1-dehydrogenase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	GCCGGTTGTTCTTTTCCCAGC	0.642													33	51					0	0	0.000491102	0	0
SRM	6723	broad.mit.edu	37	1	11115049	11115049	+	Silent	SNP	G	C	C	rs143776030		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:11115049G>C	uc001arz.1	-	7	949	c.858C>G	c.(856-858)GCC>GCG	p.A286A	SRM_uc001ary.1_Silent_p.A147A	NM_003132	NP_003123	P19623	SPEE_HUMAN	spermidine synthase	286					spermidine biosynthetic process	cytosol	protein homodimerization activity|spermidine synthase activity				0	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.228)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)	S-Adenosylmethionine(DB00118)|Spermine(DB00127)	GCACAAAGGCGGCGCGGTGCA	0.672													9	53					0	0	0.000673444	0	0
PTCHD2	57540	broad.mit.edu	37	1	11579925	11579925	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:11579925T>C	uc001ash.3	+	9	2326	c.2188T>C	c.(2188-2190)TGG>CGG	p.W730R	PTCHD2_uc001asi.1_Missense_Mutation_p.W730R	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	730	Helical; (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CAAGAGCCGCTGGGTGATTGT	0.657													5	41					0	0	8.12818e-05	0	0
LOC649330	649330	broad.mit.edu	37	1	12907329	12907329	+	Missense_Mutation	SNP	C	T	T	rs2359490		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:12907329C>T	uc009vno.2	-	1	909	c.814G>A	c.(814-816)GAT>AAT	p.D272N	HNRNPCL1_uc010obf.1_Missense_Mutation_p.D272N	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	272							nucleic acid binding|nucleotide binding				0						TTTTCATCATCCTTGATCAAC	0.507													13	158					0	0	0.000308642	0	0
LOC649330	649330	broad.mit.edu	37	1	12908049	12908049	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:12908049C>T	uc009vno.2	-	1	189	c.94G>A	c.(94-96)GAT>AAT	p.D32N	HNRNPCL1_uc010obf.1_Missense_Mutation_p.D32N	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	32							nucleic acid binding|nucleotide binding				0						GCCTCCACATCCGATTTCTTG	0.468													13	100					0	0	0.00136819	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12954580	12954580	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:12954580G>A	uc001auo.2	-	3	776	c.703C>T	c.(703-705)CGT>TGT	p.R235C		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	235											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AAGAGTTCACGAAGATTGCTC	0.483													29	65					0	0	0.00128727	0	0
NBPF1	55672	broad.mit.edu	37	1	16892177	16892177	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:16892177G>A	uc009vos.1	-	28	4128	c.3240C>T	c.(3238-3240)TCC>TCT	p.S1080S	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1080	NBPF 7.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		ATGCATAAAAGGAACTTCCAT	0.448													13	711					0	0	0.000308642	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	C	C	rs28392876	by1000genomes	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:16946438G>C	uc010ocf.1	-	3		c.460C>G			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCCTTCCGCCGGGCCAGCAGC	0.672													4	16					0	0	0.00024832	0	0
MST1P2	11209	broad.mit.edu	37	1	16974495	16974495	+	RNA	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:16974495G>A	uc009vow.2	+	5		c.1305G>A			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GGGTGAGACGGGAGGAGGGTA	0.642													4	39					0	0	8.12818e-05	0	0
TMCO4	255104	broad.mit.edu	37	1	20072026	20072026	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:20072026G>A	uc001bcn.2	-	10	1118	c.876C>T	c.(874-876)TAC>TAT	p.Y292Y	TMCO4_uc001bcm.2_Intron|TMCO4_uc001bco.1_Silent_p.Y292Y|TMCO4_uc001bcp.1_Intron|TMCO4_uc009vpn.1_Silent_p.Y292Y|TMCO4_uc001bcq.1_Silent_p.Y292Y	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	292						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		GGTCCTCACGGTATTTGCCAG	0.567													20	92					0	0	0.000375601	0	0
HMGCL	3155	broad.mit.edu	37	1	24144068	24144068	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:24144068G>A	uc001bib.2	-	3	194	c.150C>T	c.(148-150)ATC>ATT	p.I50I	HMGCL_uc010oec.1_Silent_p.I50I|HMGCL_uc009vqr.2_Intron|HMGCL_uc001bic.2_Silent_p.I25I|HMGCL_uc009vqs.1_Silent_p.I50I|HMGCL_uc001bid.1_Silent_p.I50I	NM_000191	NP_000182	P35914	HMGCL_HUMAN	3-hydroxy-3-methylglutaryl CoA lyase isoform 1	50					acetoacetic acid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA lyase activity|metal ion binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.0044)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.38e-24)|Colorectal(126;5.58e-08)|COAD - Colon adenocarcinoma(152;3.12e-06)|GBM - Glioblastoma multiforme(114;4.9e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000982)|KIRC - Kidney renal clear cell carcinoma(1967;0.0034)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0856)|LUSC - Lung squamous cell carcinoma(448;0.188)		GAGTAGATACGATATTCTATA	0.398													8	45					0	0	0.000274275	0	0
MYOM3	127294	broad.mit.edu	37	1	24384029	24384029	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:24384029C>T	uc001bin.3	-	37	4302	c.4139G>A	c.(4138-4140)CGA>CAA	p.R1380Q	MYOM3_uc001bil.3_Missense_Mutation_p.R273Q|MYOM3_uc001bim.3_Missense_Mutation_p.R1037Q	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1380	Ig-like C2-type 4.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CATGCGGTATCGGTCAAGGAA	0.527													7	26					0	0	8.12818e-05	0	0
PAFAH2	5051	broad.mit.edu	37	1	26316033	26316033	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:26316033G>A	uc001bld.3	-	3	330	c.150C>T	c.(148-150)CCC>CCT	p.P50P	PAFAH2_uc001ble.3_Silent_p.P50P	NM_000437	NP_000428	Q99487	PAFA2_HUMAN	platelet-activating factor acetylhydrolase 2	50					lipid catabolic process	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding			ovary(2)	2		Colorectal(325;3.47e-05)|Lung NSC(340;6.23e-05)|all_lung(284;9.48e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-25)|Colorectal(126;3.57e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00717)|READ - Rectum adenocarcinoma(331;0.0649)		GAATCCACAGGGGCTGCTCCA	0.582													6	10					0	0	0.00116845	0	0
ARID1A	8289	broad.mit.edu	37	1	27057924	27057924	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:27057924C>T	uc001bmv.1	+	3	2005	c.1632C>T	c.(1630-1632)CAC>CAT	p.H544H	ARID1A_uc001bmt.1_Silent_p.H544H|ARID1A_uc001bmu.1_Silent_p.H544H|ARID1A_uc001bmw.1_Silent_p.H161H	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	544					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		CACAGCAGCACCCCCAGAGCC	0.647			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								33	81					0	0	0.000339439	0	0
AHDC1	27245	broad.mit.edu	37	1	27878356	27878356	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:27878356G>T	uc009vsy.2	-	6	1240	c.271C>A	c.(271-273)CCT>ACT	p.P91T	AHDC1_uc009vsz.1_Missense_Mutation_p.P91T|AHDC1_uc001boh.1_5'UTR	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	91	Pro-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		TGTGAGACAGGACGGGCTGCC	0.736													7	42					2.0095e-06	1.47146e-05	8.12818e-05	1	0
MECR	51102	broad.mit.edu	37	1	29542575	29542575	+	Silent	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:29542575G>C	uc001brq.1	-	3	384	c.348C>G	c.(346-348)GGC>GGG	p.G116G	MECR_uc001brp.1_Silent_p.G40G|MECR_uc001brr.1_Silent_p.G40G|MECR_uc001brs.1_RNA|MECR_uc001brt.1_Silent_p.G40G|MECR_uc010ofz.1_Silent_p.G116G	NM_016011	NP_057095	Q9BV79	MECR_HUMAN	trans-2-enoyl-CoA reductase, mitochondrial	116					fatty acid biosynthetic process	mitochondrion	trans-2-enoyl-CoA reductase (NADPH) activity|zinc ion binding			ovary(1)	1		Colorectal(325;0.000389)|Breast(348;0.00765)|Lung NSC(340;0.0081)|all_lung(284;0.00914)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.39e-07)|COAD - Colon adenocarcinoma(152;2.04e-05)|STAD - Stomach adenocarcinoma(196;0.0195)|BRCA - Breast invasive adenocarcinoma(304;0.053)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.137)		TCACATTGCTGCCCACCGCTA	0.532													11	60					0	0	0.000219431	0	0
EPHA10	284656	broad.mit.edu	37	1	38227363	38227363	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:38227363G>A	uc009vvi.2	-	3	650	c.564C>T	c.(562-564)TTC>TTT	p.F188F	EPHA10_uc001cbw.3_Silent_p.F188F	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	188	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AGGCCAGGTGGAAACCCCGCC	0.677													14	41					0	0	0.000958276	0	0
SMAP2	64744	broad.mit.edu	37	1	40881029	40881029	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:40881029C>T	uc001cfj.2	+	7	722	c.657C>T	c.(655-657)TCC>TCT	p.S219S	SMAP2_uc010ojh.1_Silent_p.S219S|SMAP2_uc001cfk.2_Silent_p.S189S|SMAP2_uc010oji.1_Silent_p.S136S|SMAP2_uc010ojj.1_Silent_p.S35S	NM_022733	NP_073570	Q8WU79	SMAP2_HUMAN	small ArfGAP2	219	Interaction with clathrin heavy chains (By similarity).				regulation of ARF GTPase activity	cytoplasm|nucleus	ARF GTPase activator activity|zinc ion binding				0	Lung NSC(20;1.56e-05)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.04e-17)			CTGTTCCATCCCCTTCTTCTT	0.448													48	149					0	0	0.000781405	0	0
CCDC30	728621	broad.mit.edu	37	1	43108260	43108260	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:43108260G>A	uc009vwk.1	+	12	1865	c.1755G>A	c.(1753-1755)ACG>ACA	p.T585T	CCDC30_uc001chm.2_Silent_p.T283T|CCDC30_uc001chn.2_Silent_p.T374T	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	585	Potential.										0						ACAAATGGACGATATCTTCCA	0.458													14	83					0	0	0.000566183	0	0
C8B	732	broad.mit.edu	37	1	57415232	57415232	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:57415232T>C	uc001cyp.2	-	6	927	c.860A>G	c.(859-861)CAT>CGT	p.H287R	C8B_uc010oon.1_Missense_Mutation_p.H225R|C8B_uc010ooo.1_Missense_Mutation_p.H235R	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	287	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ACTTACAGTATGAGAGAATCG	0.234													11	31					0	0	0.00136819	0	0
INADL	10207	broad.mit.edu	37	1	62393461	62393461	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:62393461T>A	uc001dab.2	+	27	3744	c.3630T>A	c.(3628-3630)GAT>GAA	p.D1210E	INADL_uc009waf.1_Missense_Mutation_p.D1210E|INADL_uc001daa.2_Missense_Mutation_p.D1210E|INADL_uc001dad.3_Missense_Mutation_p.D907E|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1210					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CTCTGACTGATGACAGTGATG	0.403													22	60					0	0	0.000878237	0	0
CACHD1	57685	broad.mit.edu	37	1	65145291	65145291	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:65145291C>T	uc001dbo.1	+	24	3210	c.3105C>T	c.(3103-3105)ATC>ATT	p.I1035I	CACHD1_uc001dbp.1_Silent_p.I790I|CACHD1_uc001dbq.1_Silent_p.I790I|CACHD1_uc010opa.1_Silent_p.I279I	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	1086	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						ATGAGGTGATCACATTAAACA	0.493													28	72					0	0	0.00178596	0	0
LRRC7	57554	broad.mit.edu	37	1	70446077	70446077	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:70446077C>T	uc001dep.2	+	7	643	c.613C>T	c.(613-615)CAA>TAA	p.Q205*	LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	205	LRR 8.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGTTCTGGATCAAATACAAAA	0.328													26	147					0	0	0.000339439	0	0
USP33	23032	broad.mit.edu	37	1	78207390	78207390	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:78207390G>A	uc001dht.2	-	3	433	c.86C>T	c.(85-87)CCT>CTT	p.P29L	USP33_uc001dhu.2_5'UTR|USP33_uc001dhv.2_5'Flank|USP33_uc001dhw.2_Missense_Mutation_p.P29L	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	29					axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						CATTTTGTTAGGAATTTTTTC	0.318													7	39					0	0	0.000157383	0	0
BRDT	676	broad.mit.edu	37	1	92457852	92457852	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:92457852G>A	uc001dok.3	+	14	2445	c.2096G>A	c.(2095-2097)GGA>GAA	p.G699E	BRDT_uc001dol.3_Missense_Mutation_p.G699E|BRDT_uc010osz.1_Missense_Mutation_p.G703E|BRDT_uc009wdf.2_Missense_Mutation_p.G626E|BRDT_uc010ota.1_Missense_Mutation_p.G653E|BRDT_uc010otb.1_Missense_Mutation_p.G653E|BRDT_uc001dom.3_Missense_Mutation_p.G699E	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	699					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		CCGCCTGAAGGAAGAACAGGC	0.289													8	21					0	0	0.000673444	0	0
ABCA4	24	broad.mit.edu	37	1	94546147	94546147	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:94546147C>T	uc001dqh.2	-	8	1090	c.986G>A	c.(985-987)GGA>GAA	p.G329E	ABCA4_uc010otn.1_Missense_Mutation_p.G329E	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	329	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		AGAGCCACCTCCCTCGGGGTA	0.517													27	56					0	0	0.000339439	0	0
S1PR1	1901	broad.mit.edu	37	1	101705320	101705320	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:101705320C>T	uc001dud.2	+	2	1294	c.780C>T	c.(778-780)ATC>ATT	p.I260I	S1PR1_uc009weg.2_Silent_p.I260I	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	260	Helical; Name=6; (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						CCGTAATTATCGTCCTGAGCG	0.597													30	74					0	0	0.00106085	0	0
COL11A1	1301	broad.mit.edu	37	1	103491840	103491840	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:103491840C>T	uc001dul.2	-	6	1147	c.829G>A	c.(829-831)GAG>AAG	p.E277K	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Intron|COL11A1_uc001dun.2_Intron|COL11A1_uc009weh.2_Missense_Mutation_p.E277K	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	277	Nonhelical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TCTTTATACTCTGCTTCCCCA	0.413													14	47					0	0	0.000151284	0	0
CEPT1	10390	broad.mit.edu	37	1	111725439	111725439	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:111725439C>T	uc001eah.1	+	7	1073	c.865C>T	c.(865-867)CCT>TCT	p.P289S	CEPT1_uc001eai.1_Missense_Mutation_p.P289S|CEPT1_uc001eaj.1_Missense_Mutation_p.P289S|CEPT1_uc009wfz.1_Missense_Mutation_p.P23S	NM_001007794	NP_001007795	Q9Y6K0	CEPT1_HUMAN	choline/ethanolaminephosphotransferase	289	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	diacylglycerol cholinephosphotransferase activity|ethanolaminephosphotransferase activity|metal ion binding				0		all_cancers(81;2.27e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0173)|Colorectal(144;0.0375)|all cancers(265;0.0701)|LUSC - Lung squamous cell carcinoma(189;0.0888)|Epithelial(280;0.103)|COAD - Colon adenocarcinoma(174;0.141)	Choline(DB00122)	TGTCCTTTCTCCTTTTCTCCA	0.383													16	64					0	0	0.00152264	0	0
TRIM33	51592	broad.mit.edu	37	1	114952902	114952902	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:114952902G>A	uc001eew.2	-	12	2182	c.2098C>T	c.(2098-2100)CTA>TTA	p.L700L	TRIM33_uc010owr.1_Silent_p.L314L|TRIM33_uc010ows.1_Silent_p.L332L|TRIM33_uc001eex.2_Silent_p.L700L	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	700					negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TATCTACTTAGTAGATTATCT	0.413			T	RET	papillary thyroid								16	43					0	0	0.000566183	0	0
DENND2C	163259	broad.mit.edu	37	1	115078822	115078822	+	RNA	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:115078822G>A	uc001eez.2	-	29		c.4821C>T				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGTCTGGAACGAATGTGGCTT	0.507													8	21					0	0	0.000673444	0	0
DENND2C	163259	broad.mit.edu	37	1	115161026	115161026	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:115161026C>T	uc001efd.1	-	8	2007	c.1305G>A	c.(1303-1305)AAG>AAA	p.K435K	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Silent_p.K378K	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	435										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAGGTAATTCCTTTCCAGTGT	0.343													30	54					0	0	0.000339439	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			54	109					1.95512e-22	1.45279e-21	0.000781405	1	0
HMGCS2	3158	broad.mit.edu	37	1	120300003	120300003	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:120300003G>A	uc001eid.2	-	5	960	c.909C>T	c.(907-909)CCC>CCT	p.P303P	HMGCS2_uc010oxj.1_Silent_p.P261P|HMGCS2_uc001eie.2_Silent_p.P211P	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	303					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TCTTGCAAAAGGGTGTATGAA	0.522													190	209					0	0	0.000781405	0	0
NOTCH2	4853	broad.mit.edu	37	1	120458707	120458708	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:120458707_120458708CC>AA	uc001eik.2	-	34	6893_6894	c.6637_6638GG>TT	c.(6637-6639)GGG>TTG	p.G2213L		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2213	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGTGCTGGCCCCATGTGCCAAA	0.564			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				20	639					0	0	6.4e-05	0	0
FAM72B	653820	broad.mit.edu	37	1	120845996	120845997	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:120845996_120845997GG>TT	uc009whp.2	+	3	1061_1062	c.232_233GG>TT	c.(232-234)GGG>TTG	p.G78L	FAM72B_uc001ein.3_Missense_Mutation_p.G38L	NM_001100910	NP_001094380	Q86X60	FA72B_HUMAN	hypothetical protein LOC653820	78											0	all_neural(166;0.181)	all_lung(203;7.27e-05)|Lung NSC(69;0.000389)|all_epithelial(167;0.068)		Lung(183;0.0327)|LUSC - Lung squamous cell carcinoma(189;0.19)		CTTTTCTAGTGGGAACATTGTA	0.351													9	190					0	0	6.4e-05	0	0
PRKAB2	5565	broad.mit.edu	37	1	146639400	146639400	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:146639400A>G	uc001epe.2	-	3	414	c.269T>C	c.(268-270)GTC>GCC	p.V90A	PRKAB2_uc010ozm.1_Intron|PRKAB2_uc010ozn.1_Intron|PRKAB2_uc009wjf.1_Missense_Mutation_p.V90A	NM_005399	NP_005390	O43741	AAKB2_HUMAN	AMP-activated protein kinase beta 2	90					carnitine shuttle|cell cycle arrest|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm				lung(2)|skin(1)	3	all_hematologic(923;0.0487)				Adenosine monophosphate(DB00131)	AGAGATGAAGACCTCCTTGCC	0.502													64	97					0	0	0.000781405	0	0
HCN3	57657	broad.mit.edu	37	1	155254528	155254528	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:155254528C>T	uc001fjz.1	+	4	1077	c.1069C>T	c.(1069-1071)CGG>TGG	p.R357W	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Missense_Mutation_p.R52W	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	357	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GGACTCTTCCCGGCGTCAGTA	0.597													20	22					0	0	0.00152264	0	0
CD1C	911	broad.mit.edu	37	1	158261127	158261127	+	Missense_Mutation	SNP	C	T	T	rs145638725		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:158261127C>T	uc001fru.2	+	2	557	c.265C>T	c.(265-267)CGT>TGT	p.R89C	CD1C_uc001frv.2_5'Flank	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	89	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding	p.R89C(1)		ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					GTTGTTATTTCGTTTCTACCT	0.398													35	61					0	0	0.000953801	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517829	158517829	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:158517829G>A	uc010pil.1	-	1	67	c.67C>T	c.(67-69)CCA>TCA	p.P23S		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GGTCGTGTTGGAAACCCCAGA	0.448													22	21					0	0	0.000375601	0	0
OR6K2	81448	broad.mit.edu	37	1	158670152	158670152	+	Silent	SNP	G	A	A	rs142441693	by1000genomes	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:158670152G>A	uc001fsu.1	-	1	291	c.291C>T	c.(289-291)CTC>CTT	p.L97L		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ACATCTGCAGGAGACAACCAT	0.478													20	24					0	0	0.000229342	0	0
SELP	6403	broad.mit.edu	37	1	169564052	169564052	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:169564052C>T	uc001ggi.3	-	13	2230	c.2165G>A	c.(2164-2166)GGA>GAA	p.G722E	SELP_uc001ggh.2_Missense_Mutation_p.G557E|SELP_uc009wvr.2_Missense_Mutation_p.G722E	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	722	Extracellular (Potential).|Sushi 9.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	ACTGAAGTTTCCCCAGAGGTT	0.433													14	11					0	0	0.000219431	0	0
PAPPA2	60676	broad.mit.edu	37	1	176734861	176734861	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:176734861C>T	uc001gkz.2	+	15	5375	c.4211C>T	c.(4210-4212)GCT>GTT	p.A1404V	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1404	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTTGATCATGCTGATGTGGTG	0.507													31	70					0	0	0.000814825	0	0
NPL	80896	broad.mit.edu	37	1	182794924	182794924	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:182794924C>T	uc009wyb.2	+	12	887	c.747C>T	c.(745-747)ATC>ATT	p.I249I	NPL_uc010pny.1_RNA|NPL_uc001gpo.1_Silent_p.I230I|NPL_uc009wyc.2_Silent_p.I205I|NPL_uc001gpp.3_Silent_p.I249I|NPL_uc001gpq.1_Silent_p.I249I	NM_030769	NP_110396	Q9BXD5	NPL_HUMAN	N-acetylneuraminate pyruvate lyase	249					carbohydrate metabolic process	cytoplasm	N-acetylneuraminate lyase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGTTTTGTATCCAGAGATTTA	0.328													36	62					0	0	0.00111076	0	0
TPR	7175	broad.mit.edu	37	1	186332521	186332521	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:186332521G>C	uc001grv.2	-	5	781	c.484C>G	c.(484-486)CTT>GTT	p.L162V	TPR_uc010pop.1_Missense_Mutation_p.L238V	NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	162	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TTTAACTGAAGTTCACCCTTT	0.299			T	NTRK1	papillary thyroid								5	44					0	0	0.00116845	0	0
CFHR1	3078	broad.mit.edu	37	1	196796039	196796039	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:196796039A>G	uc001gtn.2	+	3	448	c.334A>G	c.(334-336)ATT>GTT	p.I112V	CFHR1_uc001gtm.2_Intron	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	112	Sushi 2.				complement activation	extracellular space					0						TACTGTGCAAATTATTTGCAA	0.423													8	90					0	0	0.000274275	0	0
CFHR5	81494	broad.mit.edu	37	1	196967338	196967338	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:196967338C>T	uc001gts.3	+	7	1179	c.1051C>T	c.(1051-1053)CAT>TAT	p.H351Y		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	351	Sushi 6.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						AGAATTTAATCATAATTCTAG	0.333													7	4					0	0	8.12818e-05	0	0
ASPM	259266	broad.mit.edu	37	1	197073111	197073111	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:197073111G>A	uc001gtu.2	-	18	5527	c.5270C>T	c.(5269-5271)TCA>TTA	p.S1757L	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1757	IQ 6.|IQ 7.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						AGACTGTAGTGAAATAACAGC	0.358													18	14					0	0	0.000958276	0	0
IPO9	55705	broad.mit.edu	37	1	201839936	201839936	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:201839936C>T	uc001gwz.2	+	18	2409	c.2359C>T	c.(2359-2361)CGT>TGT	p.R787C		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	787					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						CCAGATTCTTCGTGCCATCCT	0.572													35	35					0	0	0.000814825	0	0
SRGAP2	23380	broad.mit.edu	37	1	206610338	206610339	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:206610338_206610339CG>AT	uc001hdy.2	+	12	1651_1652	c.1318_1319CG>AT	c.(1318-1320)CGG>ATG	p.R440M	SRGAP2_uc010prt.1_Missense_Mutation_p.R363M|SRGAP2_uc001hdx.2_Missense_Mutation_p.R440M|SRGAP2_uc010pru.1_Missense_Mutation_p.R363M|SRGAP2_uc010prv.1_Missense_Mutation_p.R364M	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	527	Rho-GAP.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					AGGAATTTTCCGGGTGTCAGGA	0.406													7	211					0	0	6.4e-05	0	0
FCAMR	83953	broad.mit.edu	37	1	207135760	207135760	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:207135760C>T	uc001hfa.3	-	5	950	c.450G>A	c.(448-450)TGG>TGA	p.W150*	FCAMR_uc001hfb.2_Nonsense_Mutation_p.W150*|FCAMR_uc009xca.1_Nonsense_Mutation_p.W150*|FCAMR_uc001hfc.2_Nonsense_Mutation_p.W125*	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	105	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						TCTGGCAGATCCATCTTGGGG	0.567													36	22					0	0	0.000374591	0	0
USH2A	7399	broad.mit.edu	37	1	215848537	215848537	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:215848537T>G	uc001hku.1	-	63	13103	c.12716A>C	c.(12715-12717)AAA>ACA	p.K4239T		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4239	Extracellular (Potential).|Fibronectin type-III 27.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGTGTAGATTTTATATTCACA	0.363										HNSCC(13;0.011)			3	56					0	0	0.00024832	0	0
TAF1A	9015	broad.mit.edu	37	1	222750876	222750876	+	Missense_Mutation	SNP	C	A	A	rs145721552	by1000genomes	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:222750876C>A	uc009xdz.1	-	5	704	c.515G>T	c.(514-516)CGG>CTG	p.R172L	TAF1A_uc001hni.1_Missense_Mutation_p.R58L|TAF1A_uc001hnj.2_Missense_Mutation_p.R172L|TAF1A_uc001hnk.2_Missense_Mutation_p.R58L|TAF1A_uc010pur.1_Missense_Mutation_p.R172L	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	172					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		TAATATTTCCCGGGAAGACGT	0.383													11	538					0.00010058	0.000733213	0.00136819	1	0
NVL	4931	broad.mit.edu	37	1	224482016	224482016	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:224482016G>A	uc001hok.2	-	12	1321	c.1278C>T	c.(1276-1278)TTC>TTT	p.F426F	NVL_uc001hol.2_Silent_p.F320F|NVL_uc010pvd.1_Silent_p.F335F|NVL_uc010pve.1_Silent_p.F237F|NVL_uc010pvf.1_RNA	NM_002533	NP_002524	O15381	NVL_HUMAN	nuclear VCP-like isoform 1	426						aggresome|cytoplasm|nucleolus	ATP binding|nucleoside-triphosphatase activity			skin(2)	2				GBM - Glioblastoma multiforme(131;0.00501)		TTTCTCGGTCGAACCTTCCCG	0.448													26	28					0	0	0.000720815	0	0
ABCB10	23456	broad.mit.edu	37	1	229678046	229678046	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:229678046A>G	uc001htp.3	-	4	1037	c.994T>C	c.(994-996)TAT>CAT	p.Y332H		NM_012089	NP_036221	Q9NRK6	ABCBA_HUMAN	ATP-binding cassette, sub-family B, member 10	332	Mitochondrial intermembrane (Potential).|Helical; (Potential).|ABC transmembrane type-1.					integral to mitochondrial membrane|mitochondrial inner membrane	ATP binding|oligopeptide-transporting ATPase activity			breast(2)	2	Breast(184;0.143)|Ovarian(103;0.249)	Prostate(94;0.167)				TATCGCCCATAAATTACAGCA	0.463													19	12					0	0	0.000229342	0	0
LYST	1130	broad.mit.edu	37	1	235907411	235907411	+	Silent	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:235907411T>G	uc001hxj.2	-	30	8194	c.8019A>C	c.(8017-8019)GTA>GTC	p.V2673V	LYST_uc009xga.1_Silent_p.V309V	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	2673					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TGCTTTGAGTTACATTTTCTG	0.299									Chediak-Higashi_syndrome				17	137					0	0	0.00152264	0	0
KIF26B	55083	broad.mit.edu	37	1	245851523	245851523	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:245851523C>T	uc001ibf.1	+	12	5678	c.5238C>T	c.(5236-5238)CGC>CGT	p.R1746R	KIF26B_uc001ibg.1_Silent_p.R1364R|KIF26B_uc001ibh.1_Silent_p.R988R	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1746	Ser-rich.			R -> H (in Ref. 2; BAA91469).	microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			CCAGAGCGCGCGGCCCGTCCG	0.736													6	28					0	0	8.12818e-05	0	0
CNST	163882	broad.mit.edu	37	1	246810539	246810539	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr1:246810539A>G	uc001ibp.2	+	9	1414	c.1036A>G	c.(1036-1038)ACA>GCA	p.T346A	CNST_uc001ibo.3_Missense_Mutation_p.T346A	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	346					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						GGACGTGCAAACAGATTCCCC	0.547											OREG0014367	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	60					0	0	0.000781405	0	0
FAM107B	83641	broad.mit.edu	37	10	14816510	14816510	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:14816510G>A	uc001ina.1	-	1	387	c.153C>T	c.(151-153)ACC>ACT	p.T51T	FAM107B_uc010qbu.1_RNA	NM_031453	NP_113641	Q9H098	F107B_HUMAN	hypothetical protein LOC83641	Error:Variant_position_missing_in_Q9H098_after_alignment										breast(4)	4						GCACACGGACGGTGGAATGAG	0.562													8	43					0	0	0.000442599	0	0
SLC39A12	221074	broad.mit.edu	37	10	18266932	18266932	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:18266932G>A	uc001ipo.2	+	5	1126	c.853G>A	c.(853-855)GAT>AAT	p.D285N	SLC39A12_uc001ipn.2_Missense_Mutation_p.D285N|SLC39A12_uc001ipp.2_Missense_Mutation_p.D285N|SLC39A12_uc010qck.1_Missense_Mutation_p.D151N	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	285	Cytoplasmic (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						AATAACCCATGATCAGGACTA	0.378													18	63					0	0	0.000566183	0	0
PLXDC2	84898	broad.mit.edu	37	10	20335888	20335888	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:20335888G>A	uc001iqg.1	+	3	1052	c.415G>A	c.(415-417)GAA>AAA	p.E139K	PLXDC2_uc001iqh.1_Intron	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	139	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						AGACCAAATGGAAAAAGATAA	0.383													5	69					0	0	0.000602214	0	0
NEBL	10529	broad.mit.edu	37	10	21134200	21134200	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:21134200T>C	uc001iqi.2	-	12	1611	c.1214A>G	c.(1213-1215)AAC>AGC	p.N405S	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	405	Nebulin 11.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CCTCAGAAGGTTGGTGATGTA	0.328													13	25					0	0	0.000151284	0	0
NEBL	10529	broad.mit.edu	37	10	21169773	21169773	+	Missense_Mutation	SNP	C	T	T	rs147430943		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:21169773C>T	uc001iqi.2	-	5	827	c.430G>A	c.(430-432)GAG>AAG	p.E144K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	144	Nebulin 4.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TCAGGGGGCTCCTTCATGTGG	0.413													17	81					0	0	0.00074312	0	0
ARMC4	55130	broad.mit.edu	37	10	28149619	28149619	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:28149619C>T	uc009xky.2	-	19	3054	c.2956G>A	c.(2956-2958)GCC>ACC	p.A986T	ARMC4_uc010qds.1_Missense_Mutation_p.A511T|ARMC4_uc010qdt.1_Missense_Mutation_p.A678T|ARMC4_uc001itz.2_Missense_Mutation_p.A986T	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	986	ARM 9.						binding			ovary(4)|skin(2)	6						TGGTACAAGGCCTGAGCTGTC	0.493													14	54					0	0	0.000422831	0	0
SVIL	6840	broad.mit.edu	37	10	29812462	29812462	+	Silent	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:29812462T>C	uc001iut.1	-	15	3834	c.3081A>G	c.(3079-3081)GGA>GGG	p.G1027G	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Silent_p.G601G	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1027					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				AGTCCAAGTTTCCTTGTGCAT	0.507													20	50					0	0	0.000229342	0	0
ARHGAP12	94134	broad.mit.edu	37	10	32197517	32197517	+	Silent	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:32197517A>G	uc001ivz.1	-	3	537	c.267T>C	c.(265-267)AAT>AAC	p.N89N	ARHGAP12_uc001ivy.1_Silent_p.N87N|ARHGAP12_uc009xls.2_Silent_p.N87N|ARHGAP12_uc001iwb.1_Silent_p.N87N|ARHGAP12_uc001iwc.1_Silent_p.N87N|ARHGAP12_uc009xlq.1_Silent_p.N87N|ARHGAP12_uc001iwd.1_Silent_p.N87N|ARHGAP12_uc009xlr.1_Silent_p.N87N	NM_018287	NP_060757	Q8IWW6	RHG12_HUMAN	Rho GTPase activating protein 12	89					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		Prostate(175;0.0199)				TCGTGGAGTTATTTGGCAGAC	0.448													16	40					0	0	0.000566183	0	0
C10orf68	79741	broad.mit.edu	37	10	33103331	33103331	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:33103331G>A	uc001iwn.3	+	12	1417	c.944G>A	c.(943-945)GGA>GAA	p.G315E	C10orf68_uc001iwl.1_Intron|C10orf68_uc001iwm.1_Missense_Mutation_p.G291E|C10orf68_uc010qei.1_Missense_Mutation_p.G263E|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	315										skin(2)|ovary(1)	3						GATGCATTTGGAAGAGATATA	0.328													31	231					0	0	0.00058488	0	0
FZD8	8325	broad.mit.edu	37	10	35929461	35929461	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:35929461G>A	uc001iyz.1	-	1	902	c.897C>T	c.(895-897)TTC>TTT	p.F299F		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	299	Cytoplasmic (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						TGTCGATAAGGAAGGTGGAGA	0.612													9	14					0	0	0.000151284	0	0
FZD8	8325	broad.mit.edu	37	10	35930060	35930060	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:35930060A>T	uc001iyz.1	-	1	303	c.298T>A	c.(298-300)TAC>AAC	p.Y100N		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	100	FZ.|Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						GGCTTCTTGTAGTCCTCTAGG	0.667													10	26					0	0	0.000151284	0	0
ANUBL1	93550	broad.mit.edu	37	10	46159129	46159129	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:46159129C>T	uc001jcp.3	-	2	287	c.45G>A	c.(43-45)ATG>ATA	p.M15I	ANUBL1_uc001jcm.3_Missense_Mutation_p.M15I|ANUBL1_uc009xmu.2_5'UTR|ANUBL1_uc001jcn.3_5'UTR|ANUBL1_uc001jco.3_Missense_Mutation_p.M15I|ANUBL1_uc001jcq.2_RNA|ANUBL1_uc001jcr.2_Missense_Mutation_p.M15I	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	15							zinc ion binding				0						AAAATGGTCCCATGTTATCAT	0.363													18	29					0	0	0.000295444	0	0
LOC642826	642826	broad.mit.edu	37	10	47207813	47207813	+	RNA	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:47207813T>C	uc001jei.2	-	12		c.1586A>G			uc009xnf.2_Missense_Mutation_p.H132R					Homo sapiens cDNA, FLJ99065.												0						TTTACTTACATGGTTTGTACA	0.294													8	30					0	0	0.000673444	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49658824	49658824	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:49658824C>T	uc001jgt.2	-	9	1645	c.1348G>A	c.(1348-1350)GAG>AAG	p.E450K	ARHGAP22_uc001jgs.2_Missense_Mutation_p.E360K|ARHGAP22_uc001jgu.2_Missense_Mutation_p.E466K|ARHGAP22_uc010qgl.1_Missense_Mutation_p.E407K|ARHGAP22_uc010qgm.1_Missense_Mutation_p.E456K|ARHGAP22_uc001jgv.2_Missense_Mutation_p.E148K|ARHGAP22_uc001jgr.2_Missense_Mutation_p.E167K	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	450	Ser-rich.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						ATGGGCACCTCCAGGGATGAG	0.677													3	3					0	0	6.4e-05	0	0
C10orf71	118461	broad.mit.edu	37	10	50531539	50531539	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:50531539C>T	uc010qgp.1	+	3	1288	c.949C>T	c.(949-951)CCT>TCT	p.P317S		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	317											0						AGAACCCTGTCCTCCTGAGCG	0.577													12	32					0	0	0.000219431	0	0
PCDH15	65217	broad.mit.edu	37	10	55568492	55568492	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:55568492G>A	uc010qhs.1	-	37	5728	c.5333C>T	c.(5332-5334)TCG>TTG	p.S1778L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.S1771L|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGCTCCTGGCGACTTCTTTTG	0.478										HNSCC(58;0.16)			7	5					0	0	0.000274275	0	0
PRF1	5551	broad.mit.edu	37	10	72357828	72357828	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:72357828C>T	uc009xqg.2	-	3	1810	c.1649G>A	c.(1648-1650)CGG>CAG	p.R550Q	PRF1_uc001jrf.3_Missense_Mutation_p.R550Q	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	550					apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						GGCCCCACTCCGGTTTCCTGG	0.582			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				14	21					0	0	0.000308642	0	0
OIT3	170392	broad.mit.edu	37	10	74684322	74684322	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:74684322G>A	uc001jte.1	+	7	1505	c.1287G>A	c.(1285-1287)TTG>TTA	p.L429L	OIT3_uc009xqs.1_Intron	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	429	ZP.					nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					TGAGCGGCTTGGAAAGCTTGG	0.552													20	31					0	0	0.00152264	0	0
Unknown	0	broad.mit.edu	37	10	79540618	79540618	+	RNA	SNP	A	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:79540618A>C	uc001jyv.2	+	1		c.9A>C			uc001jyw.1_5'Flank|uc001jyx.2_5'Flank|uc001jyz.2_5'Flank|uc001jza.2_5'Flank|uc001jzb.2_5'Flank|uc001jze.1_5'Flank|uc010qll.1_5'Flank|uc001jzf.1_5'Flank|uc001jzg.2_5'Flank|uc010qlm.1_5'Flank|uc001jzh.2_5'Flank					DQ589398																		GGCCAACCGCAGGCCATCACT	0.602													4	4					0	0	0.00024832	0	0
KIF11	3832	broad.mit.edu	37	10	94368953	94368954	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:94368953_94368954CC>AA	uc001kic.2	+	5	872_873	c.564_565CC>AA	c.(562-567)CCCCGT>CCAAGT	p.R189S	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	189	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						TTGATGATCCCCGTAACAAGGT	0.312													10	400					0	0	6.4e-05	0	0
PIPSL	266971	broad.mit.edu	37	10	95720581	95720581	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:95720581C>T	uc009xuj.2	-	1	1092	c.573G>A	c.(571-573)ATG>ATA	p.M191I		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						AAAGATTGTTCATCACCACAA	0.463													19	34					0	0	0.00152264	0	0
CYP2C19	1557	broad.mit.edu	37	10	96522594	96522594	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:96522594G>A	uc010qnz.1	+	1	132	c.132G>A	c.(130-132)CAG>CAA	p.Q44Q	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	44					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	ATATCCTACAGATAGATATTA	0.408													24	36					0	0	0.00106085	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98369571	98369571	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:98369571C>T	uc001kmq.2	-	14	2196	c.2068G>A	c.(2068-2070)GAG>AAG	p.E690K	PIK3AP1_uc001kmo.2_Missense_Mutation_p.E289K|PIK3AP1_uc001kmp.2_Missense_Mutation_p.E512K	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	690						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		ACTCCAAACTCCACTTTTGCA	0.532													106	137					0	0	0.000781405	0	0
PKD2L1	9033	broad.mit.edu	37	10	102058345	102058345	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:102058345G>A	uc001kqx.1	-	4	1088	c.705C>T	c.(703-705)CTC>CTT	p.L235L	PKD2L1_uc009xwm.1_Silent_p.L188L	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	235	Extracellular (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		GCCCAAAGGGGAGTTGTTCTT	0.527													39	55					0	0	0.00170553	0	0
PAX2	5076	broad.mit.edu	37	10	102566256	102566256	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:102566256G>A	uc001krk.3	+	7	1305	c.755G>A	c.(754-756)CGA>CAA	p.R252Q	PAX2_uc001krl.3_Missense_Mutation_p.R229Q|PAX2_uc001krm.3_Missense_Mutation_p.R252Q|PAX2_uc001kro.3_Missense_Mutation_p.R229Q|PAX2_uc001krn.3_Missense_Mutation_p.R229Q|PAX2_uc010qps.1_Missense_Mutation_p.R228Q|PAX2_uc001krp.1_Missense_Mutation_p.R225Q	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	252					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		AAGCACTTGCGAGCTGACACC	0.552													66	224					0	0	0.000781405	0	0
DOCK1	1793	broad.mit.edu	37	10	129231674	129231674	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:129231674C>T	uc001ljt.2	+	48	5043	c.4979C>T	c.(4978-4980)TCC>TTC	p.S1660F	DOCK1_uc010qun.1_Missense_Mutation_p.S1681F|DOCK1_uc009yaq.2_Missense_Mutation_p.S655F	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1660					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		AGCACCCCTTCCAGACCAGGC	0.637													24	44					0	0	0.000375601	0	0
DPYSL4	10570	broad.mit.edu	37	10	134010400	134010400	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:134010400G>A	uc009ybb.2	+	5	668	c.514G>A	c.(514-516)GAC>AAC	p.D172N		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	172					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		GGCATACAAGGACCGGTGCCA	0.627													23	80					0	0	0.00178596	0	0
PRAP1	118471	broad.mit.edu	37	10	135165827	135165827	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr10:135165827C>T	uc001lmp.2	+	5	417	c.339C>T	c.(337-339)TAC>TAT	p.Y113Y	PRAP1_uc001lmr.2_Silent_p.Y104Y|PRAP1_uc001lmq.1_Silent_p.Y85Y	NM_145202	NP_660203	Q96NZ9	PRAP1_HUMAN	proline-rich acidic protein 1 isoform 1	113						extracellular region					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		all cancers(32;7.08e-06)|OV - Ovarian serous cystadenocarcinoma(35;7.88e-06)|Epithelial(32;9.48e-06)		ACAGCCTGTACCACCCTCCGC	0.627													10	90					0	0	0.000978159	0	0
RNH1	6050	broad.mit.edu	37	11	502099	502099	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:502099C>G	uc001lpk.1	-	1	1472	c.64G>C	c.(64-66)GAG>CAG	p.E22Q	RNH1_uc001lpl.1_Missense_Mutation_p.E22Q|RNH1_uc001lpm.1_Missense_Mutation_p.E22Q|RNH1_uc001lpn.1_Missense_Mutation_p.E22Q|RNH1_uc001lpo.1_Missense_Mutation_p.E22Q|RNH1_uc009ybw.1_RNA|RNH1_uc001lpp.1_Missense_Mutation_p.E22Q|RNH1_uc001lpt.1_5'UTR|RNH1_uc001lpq.1_Missense_Mutation_p.E22Q|RNH1_uc001lpr.1_Missense_Mutation_p.E22Q|RNH1_uc001lps.1_Missense_Mutation_p.E22Q|RNH1_uc009ybx.1_Missense_Mutation_p.E22Q	NM_203389	NP_976323	P13489	RINI_HUMAN	ribonuclease/angiogenin inhibitor	22	LRR 1.				mRNA catabolic process|regulation of angiogenesis	angiogenin-PRI complex|cytoplasm	protein binding|ribonuclease inhibitor activity				0		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.26e-26)|Epithelial(43;1.34e-25)|OV - Ovarian serous cystadenocarcinoma(40;5.31e-20)|BRCA - Breast invasive adenocarcinoma(625;8.01e-05)|Lung(200;0.0378)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGGAGGAGCTCGGCCCATCTA	0.667													8	22					0	0	0.000673444	0	0
PDDC1	347862	broad.mit.edu	37	11	772450	772450	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:772450A>G	uc001lrc.2	-	5	452	c.427T>C	c.(427-429)TTC>CTC	p.F143L	PDDC1_uc010qwm.1_Missense_Mutation_p.F93L|PDDC1_uc001lrd.2_Missense_Mutation_p.F143L|PDDC1_uc001lrf.1_Missense_Mutation_p.F107L|PDDC1_uc001lrg.1_RNA|PDDC1_uc009ycg.2_Missense_Mutation_p.F93L|PDDC1_uc010qwn.1_RNA|PDDC1_uc010qwo.1_RNA|PDDC1_uc010qwp.1_Missense_Mutation_p.F107L|PDDC1_uc010qwq.1_Missense_Mutation_p.F57L|PDDC1_uc010qwr.1_Missense_Mutation_p.F143L|PDDC1_uc010qws.1_Missense_Mutation_p.F93L	NM_182612	NP_872418	Q8NB37	PDDC1_HUMAN	Parkinson disease 7 domain containing 1	143						extracellular region					0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;3.66e-26)|Epithelial(43;2.43e-25)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-19)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TAGCTGTCGAACACCCAGGAT	0.647													22	68					0	0	0.000586117	0	0
SLC22A18	5002	broad.mit.edu	37	11	2943699	2943699	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:2943699C>T	uc001lwx.2	+	10	1218	c.1000C>T	c.(1000-1002)CTG>TTG	p.L334L	SLC22A18_uc001lwy.2_Silent_p.L334L|SLC22A18_uc001lwz.2_Silent_p.L236L	NM_183233	NP_899056	Q96BI1	S22AI_HUMAN	tumor suppressing subtransferable candidate 5	334	Helical; (Potential).				excretion|organic cation transport	apical plasma membrane|cytoplasmic part|integral to membrane|nuclear envelope	drug:hydrogen antiporter activity|symporter activity|ubiquitin protein ligase binding			central_nervous_system(2)|ovary(1)	3		all_epithelial(84;0.000124)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)|all_lung(207;0.198)		BRCA - Breast invasive adenocarcinoma(625;0.00256)|LUSC - Lung squamous cell carcinoma(625;0.192)		CTTCTGCCTCCTGGTGCCCGG	0.657													20	84					0	0	0.000586117	0	0
NAP1L4	4676	broad.mit.edu	37	11	2972492	2972493	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:2972492_2972493GG>TT	uc001lxc.2	-	14	1259_1260	c.1118_1119CC>AA	c.(1117-1119)CCC>CAA	p.P373Q	NAP1L4_uc001lxb.2_RNA|NAP1L4_uc009ydt.2_RNA|NAP1L4_uc010qxm.1_Missense_Mutation_p.P373Q|NAP1L4_uc010qxn.1_Missense_Mutation_p.P373Q	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	373					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		TACCAACCTTGGGGTTAATTTC	0.401													12	564					0	0	6.4e-05	0	0
NAP1L4	4676	broad.mit.edu	37	11	2979666	2979667	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:2979666_2979667GG>TT	uc001lxc.2	-	10	995_996	c.854_855CC>AA	c.(853-855)CCC>CAA	p.P285Q	NAP1L4_uc009ydt.2_RNA|NAP1L4_uc010qxm.1_Missense_Mutation_p.P285Q|NAP1L4_uc010qxn.1_Missense_Mutation_p.P285Q	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	285					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		AGGACTCATTGGGTACTTGTTT	0.342													13	732					0	0	6.4e-05	0	0
OR51E2	81285	broad.mit.edu	37	11	4703390	4703390	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:4703390C>T	uc001lzk.2	-	2	796	c.552G>A	c.(550-552)ATG>ATA	p.M184I		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		AGGCCAACTTCATTACATCCT	0.498													23	78					0	0	0.00047179	0	0
OR51E2	81285	broad.mit.edu	37	11	4703875	4703875	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:4703875G>A	uc001lzk.2	-	2	311	c.67C>T	c.(67-69)CAT>TAT	p.H23Y		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		ACCCAGAAATGGGCTTTCTCT	0.517													14	38					0	0	0.000308642	0	0
OR51S1	119692	broad.mit.edu	37	11	4869963	4869963	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:4869963C>T	uc010qyo.1	-	1	476	c.476G>A	c.(475-477)CGA>CAA	p.R159Q		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCCAGGCATCGAAAAGAAAT	0.542													27	101					0	0	0.000878237	0	0
OR51A7	119687	broad.mit.edu	37	11	4929383	4929383	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:4929383C>T	uc010qyq.1	+	1	784	c.784C>T	c.(784-786)CAC>TAC	p.H262Y		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCCATGCATCACTTTGCCAA	0.488													44	163					0	0	0.000781405	0	0
OR51A4	401666	broad.mit.edu	37	11	4967442	4967442	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:4967442T>G	uc010qys.1	-	1	889	c.889A>C	c.(889-891)ACT>CCT	p.T297P		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATCTGTTTAGTTTTTACACAA	0.393													11	122					0	0	0.000219431	0	0
MMP26	56547	broad.mit.edu	37	11	5010886	5010886	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:5010886C>T	uc001lzv.2	+	2	126	c.108C>T	c.(106-108)TTC>TTT	p.F36F		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	36					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		AGGGCTATTTCCATCAATTTT	0.468													5	5					0	0	0.000602214	0	0
OR52A4	390053	broad.mit.edu	37	11	5142708	5142709	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:5142708_5142709GG>AA	uc001lzz.1	-	1	100_101	c.100_101CC>TT	c.(100-102)CCA>TTA	p.P34L	OR52A4_uc001maa.2_RNA	NM_001005222	NP_001005222			olfactory receptor, family 52, subfamily A,											ovary(2)	2		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.7e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		AGCACAGAATGGAATCCCAATC	0.421													7	28					0	0	6.4e-05	0	0
OR52A5	390054	broad.mit.edu	37	11	5153159	5153159	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:5153159G>A	uc010qyx.1	-	1	714	c.714C>T	c.(712-714)TTC>TTT	p.F238F		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	238	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TAAAGGCCTTGAATCGTGCCT	0.413													13	31					0	0	0.00136819	0	0
OR51V1	283111	broad.mit.edu	37	11	5221055	5221055	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:5221055G>A	uc010qyz.1	-	1	876	c.876C>T	c.(874-876)TTC>TTT	p.F292F		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTAAAGGTGGGAAAAGGATGT	0.433													9	46					0	0	0.000274275	0	0
OR51V1	283111	broad.mit.edu	37	11	5221880	5221880	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:5221880C>T	uc010qyz.1	-	1	51	c.51G>A	c.(49-51)ACG>ACA	p.T17T		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGAAGAATTCGTGCTGGTGC	0.428													21	53					0	0	0.000229342	0	0
OR51B4	79339	broad.mit.edu	37	11	5323122	5323122	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:5323122C>T	uc010qza.1	-	1	55	c.55G>A	c.(55-57)GAG>AAG	p.E19K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGAACTGCCTCTGAGCCCAAG	0.463											OREG0003718	type=REGULATORY REGION|Gene=OR51B4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	24	80					0	0	0.000878237	0	0
OR51B6	390058	broad.mit.edu	37	11	5372797	5372797	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:5372797G>A	uc010qzb.1	+	1	60	c.60G>A	c.(58-60)AAG>AAA	p.K20K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCATGGAGAAGGCACATCACT	0.463													13	35					0	0	0.000308642	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443520	5443520	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:5443520C>T	uc010qzd.1	+	1	90	c.90C>T	c.(88-90)TCC>TCT	p.S30S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTGGATCTCCATCCCCGTCT	0.517													31	112					0	0	0.001512	0	0
OR5P2	120065	broad.mit.edu	37	11	7817638	7817638	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:7817638C>T	uc001mfp.1	-	1	852	c.852G>A	c.(850-852)CTG>CTA	p.L284L		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GGCTGTAGATCAGGGGGTTCA	0.413													14	40					0	0	0.000219431	0	0
OR10A3	26496	broad.mit.edu	37	11	7960357	7960357	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:7960357G>A	uc010rbi.1	-	1	711	c.711C>T	c.(709-711)GCC>GCT	p.A237A		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGGTGGAAAAGGCCTTTTGTC	0.443													20	38					0	0	0.00152264	0	0
DENND5A	23258	broad.mit.edu	37	11	9171741	9171741	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:9171741G>A	uc001mhl.2	-	15	2877	c.2622C>T	c.(2620-2622)ATC>ATT	p.I874I	DENND5A_uc001mhk.2_Silent_p.I217I|DENND5A_uc010rbw.1_Silent_p.I874I|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	874	RUN 1.									liver(1)	1						TGATTTCCCCGATGTTCTGGA	0.488													26	90					0	0	0.000491102	0	0
AMPD3	272	broad.mit.edu	37	11	10516495	10516495	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:10516495C>T	uc001mio.1	+	8	1519	c.1184C>T	c.(1183-1185)CCT>CTT	p.P395L	AMPD3_uc010rbz.1_Missense_Mutation_p.P236L|AMPD3_uc001min.1_Missense_Mutation_p.P404L|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.P402L|AMPD3_uc009yfy.2_Missense_Mutation_p.P395L	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	395					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		AAATACAACCCTGTGGGGGCC	0.532													45	112					0	0	0.000781405	0	0
EIF4G2	1982	broad.mit.edu	37	11	10822178	10822178	+	Missense_Mutation	SNP	T	C	C	rs141188640	byFrequency	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:10822178T>C	uc001mjc.2	-	17	2078	c.1661A>G	c.(1660-1662)GAA>GGA	p.E554G	EIF4G2_uc001mjb.2_Missense_Mutation_p.E348G|EIF4G2_uc009ygf.2_Missense_Mutation_p.E348G|EIF4G2_uc001mjd.2_Missense_Mutation_p.E516G	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	554	MI.				cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		ATTTAGATATTCAGTCACAAC	0.343													26	59					0	0	0.00127121	0	0
ZDHHC13	54503	broad.mit.edu	37	11	19197496	19197496	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:19197496C>T	uc001mpi.2	+	17	1963	c.1858C>T	c.(1858-1860)CGC>TGC	p.R620C	ZDHHC13_uc001mpj.2_Missense_Mutation_p.R490C	NM_019028	NP_061901	Q8IUH4	ZDH13_HUMAN	zinc finger, DHHC domain containing 13 isoform	620					positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|palmitoyltransferase activity|signal transducer activity|zinc ion binding				0						GAAGGTTCTTCGCTCAGTATG	0.423													33	128					0	0	0.000374591	0	0
NAV2	89797	broad.mit.edu	37	11	20057619	20057619	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:20057619C>T	uc010rdm.1	+	13	3313	c.2952C>T	c.(2950-2952)TCC>TCT	p.S984S	NAV2_uc001mpp.2_Silent_p.S897S|NAV2_uc001mpr.3_Silent_p.S961S|NAV2_uc001mpt.2_Silent_p.S47S|NAV2_uc009yhx.2_Silent_p.S47S|NAV2_uc009yhy.1_5'UTR	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	984						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						CACCTGCCTCCTCTCGAAAAA	0.582													14	40					0	0	0.000151284	0	0
PRMT3	10196	broad.mit.edu	37	11	20417360	20417360	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:20417360C>T	uc001mqb.2	+	6	629	c.412C>T	c.(412-414)CTT>TTT	p.L138F	PRMT3_uc001mqc.2_Missense_Mutation_p.L61F|PRMT3_uc010rdn.1_Missense_Mutation_p.L76F	NM_005788	NP_005779	O60678	ANM3_HUMAN	protein arginine methyltransferase 3 isoform 1	138							zinc ion binding				0						TGTAGAAGATCTTTATGAACC	0.348													19	55					0	0	0.00152264	0	0
GAS2	2620	broad.mit.edu	37	11	22747898	22747898	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:22747898A>G	uc009yie.2	+	4	634	c.328A>G	c.(328-330)AGA>GGA	p.R110G	GAS2_uc001mqm.2_Missense_Mutation_p.R110G|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Missense_Mutation_p.R110G	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	110	CH.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						CTTTTTTGCCAGAGACAATAC	0.408													5	32					0	0	8.12818e-05	0	0
ANO3	63982	broad.mit.edu	37	11	26556094	26556094	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:26556094G>A	uc001mqt.3	+	9	1106	c.961G>A	c.(961-963)GGA>AGA	p.G321R	ANO3_uc010rdr.1_Missense_Mutation_p.G305R|ANO3_uc010rds.1_Missense_Mutation_p.G160R|ANO3_uc010rdt.1_Missense_Mutation_p.G175R	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	321	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ATATGAAAATGGAATATCAAA	0.318													20	71					0	0	0.00121646	0	0
KCNA4	3739	broad.mit.edu	37	11	30033394	30033394	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:30033394C>T	uc001msk.2	-	2	1984	c.832G>A	c.(832-834)GAA>AAA	p.E278K		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	278						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TCTTCCTCTTCTCTCACAAAG	0.502													11	53					0	0	0.000978159	0	0
KCNA4	3739	broad.mit.edu	37	11	30033883	30033883	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:30033883C>T	uc001msk.2	-	2	1495	c.343G>A	c.(343-345)GAG>AAG	p.E115K		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	115						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGGATCTTCTCCTCAGAGCCA	0.418													5	21					0	0	0.000602214	0	0
SLC35C1	55343	broad.mit.edu	37	11	45832350	45832350	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:45832350C>T	uc001nbp.2	+	2	1271	c.559C>T	c.(559-561)CAG>TAG	p.Q187*	SLC35C1_uc001nbo.2_Nonsense_Mutation_p.Q174*|SLC35C1_uc010rgm.1_Nonsense_Mutation_p.Q174*	NM_018389	NP_060859	Q96A29	FUCT1_HUMAN	GDP-fucose transporter 1 isoform a	187						Golgi membrane|integral to membrane	GDP-fucose transmembrane transporter activity				0				GBM - Glioblastoma multiforme(35;0.227)		TGGTGTGGACCAGGAGGGGGC	0.433													9	38					0	0	0.000442599	0	0
OR4C12	283093	broad.mit.edu	37	11	50003196	50003196	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:50003196T>A	uc010ria.1	-	1	842	c.842A>T	c.(841-843)AAT>ATT	p.N281I		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GACCACGGGATTTAACATTGG	0.388													11	27					0	0	0.000978159	0	0
OR4C15	81309	broad.mit.edu	37	11	55322663	55322663	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:55322663G>A	uc010rig.1	+	1	881	c.881G>A	c.(880-882)GGA>GAA	p.G294E		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCCACCTGTGGATCTCACATT	0.433										HNSCC(20;0.049)			13	56					0	0	0.000151284	0	0
OR5L1	219437	broad.mit.edu	37	11	55579695	55579695	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:55579695C>T	uc001nhw.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				TCACTGTCTTCCATGGAACAG	0.517													20	48					0	0	0.000295444	0	0
OR5F1	338674	broad.mit.edu	37	11	55761208	55761208	+	Silent	SNP	C	T	T	rs149961467		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:55761208C>T	uc010riv.1	-	1	894	c.894G>A	c.(892-894)AAG>AAA	p.K298K		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					CTAAAGCCTTCTTTACTTCCT	0.403													9	41					0	0	0.000442599	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798785	55798785	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:55798785G>A	uc010riw.1	+	1	891	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					ACAAGGATGTGAAAAATGCTC	0.313													25	50					0	0	0.000375601	0	0
OR8H2	390151	broad.mit.edu	37	11	55873002	55873002	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:55873002T>C	uc010riy.1	+	1	484	c.484T>C	c.(484-486)TCC>CCC	p.S162P		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					CAACGTGGTTTCCATGAGCAG	0.428										HNSCC(53;0.14)			36	125					0	0	0.000953801	0	0
OR8K5	219453	broad.mit.edu	37	11	55927748	55927748	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:55927748C>T	uc010rja.1	-	1	46	c.46G>A	c.(46-48)GAA>AAA	p.E16K		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				CTTGTGAGTTCCATCAGAATG	0.438													30	74					0	0	0.000409698	0	0
OR8K3	219473	broad.mit.edu	37	11	56085890	56085890	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:56085890G>A	uc010rjf.1	+	1	108	c.108G>A	c.(106-108)GTG>GTA	p.V36V		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TGATCTATGTGATCTCAGTGA	0.433													45	65					0	0	0.000589545	0	0
OR5M11	219487	broad.mit.edu	37	11	56310479	56310479	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:56310479G>A	uc010rjl.1	-	1	255	c.255C>T	c.(253-255)ATC>ATT	p.I85I		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTCAGATACGATATTAGTCG	0.448													19	35					0	0	0.00152264	0	0
OR5B12	390191	broad.mit.edu	37	11	58207522	58207522	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:58207522T>G	uc010rkh.1	-	1	103	c.103A>C	c.(103-105)ATC>CTC	p.I35L		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				ACCAGAGTGATGAGGTAGATG	0.483													9	25					0	0	0.000274275	0	0
GLYATL2	219970	broad.mit.edu	37	11	58602210	58602210	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:58602210C>T	uc001nnd.3	-	6	708	c.577G>A	c.(577-579)GAA>AAA	p.E193K	GLYATL2_uc009ymq.2_Missense_Mutation_p.E193K	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	193						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	AGGCAGCGTTCAATATATTTC	0.458													12	28					0	0	0.00136819	0	0
CD5	921	broad.mit.edu	37	11	60885711	60885712	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:60885711_60885712GG>AA	uc009ynk.2	+	3	262_263	c.159_160GG>AA	c.(157-162)AAGGAC>AAAAAC	p.D54N		NM_014207	NP_055022	P06127	CD5_HUMAN	CD5 molecule precursor	54	Extracellular (Potential).|SRCR 1.				cell proliferation|cell recognition	integral to plasma membrane	scavenger receptor activity			ovary(1)	1		all_lung(304;5.94e-05)|Lung NSC(402;7.26e-05)		BRCA - Breast invasive adenocarcinoma(625;0.000946)|Lung(977;0.0086)|LUSC - Lung squamous cell carcinoma(625;0.0528)		TCTACCTCAAGGACGGATGGCA	0.619													30	57					0	0	6.4e-05	0	0
DDB1	1642	broad.mit.edu	37	11	61091584	61091584	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:61091584C>A	uc001nrc.3	-	7	1014	c.788G>T	c.(787-789)CGA>CTA	p.R263L	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.R263L|DDB1_uc010rlg.1_RNA|DDB1_uc001nrd.2_Missense_Mutation_p.R263L|DDB1_uc009ynl.1_Missense_Mutation_p.R150L	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	263	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						AGGGTCCACTCGATTGTGGCA	0.498								NER					5	106					0.00116845	0.00843318	0.00116845	1	0
ASRGL1	80150	broad.mit.edu	37	11	62123802	62123802	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:62123802G>A	uc001nte.3	+	3	480	c.196G>A	c.(196-198)GGG>AGG	p.G66R	ASRGL1_uc001ntf.3_Missense_Mutation_p.G66R|ASRGL1_uc001ntg.3_Intron|ASRGL1_uc001nth.1_5'Flank	NM_025080	NP_079356	Q7L266	ASGL1_HUMAN	asparaginase-like 1	66					asparagine catabolic process via L-aspartate|protein maturation	cytoplasm|microtubule cytoskeleton|nucleus	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0					L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)	TTTAGGTTGTGGGTCTGTCTT	0.303													25	50					0	0	0.00127121	0	0
NRXN2	9379	broad.mit.edu	37	11	64417920	64417920	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:64417920C>T	uc001oar.2	-	16	3548	c.3109G>A	c.(3109-3111)GGG>AGG	p.G1037R	NRXN2_uc001oas.2_Missense_Mutation_p.G997R|NRXN2_uc001oaq.2_Missense_Mutation_p.G704R	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CCAGCCCCACCTTTGAGATCG	0.637													22	59					0	0	0.000878237	0	0
PELI3	246330	broad.mit.edu	37	11	66239884	66239885	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:66239884_66239885CC>TT	uc001oic.3	+	5	563_564	c.399_400CC>TT	c.(397-402)TCCCGG>TCTTGG	p.R134W	PELI3_uc001oib.2_Missense_Mutation_p.R134W|PELI3_uc001oid.3_Missense_Mutation_p.R110W|PELI3_uc001oie.3_5'UTR|PELI3_uc010rpd.1_5'Flank	NM_145065	NP_659502	Q8N2H9	PELI3_HUMAN	pellino 3 alpha isoform 1	134						cytosol	protein binding			ovary(1)	1						ATACACTGTCCCGGAGCCACTC	0.545													9	48					0	0	6.4e-05	0	0
RPS6KB2	6199	broad.mit.edu	37	11	67196062	67196062	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:67196062G>C	uc001old.2	+	1	128	c.46G>C	c.(46-48)GAG>CAG	p.E16Q	RPS6KB2_uc001olf.2_5'UTR|RPS6KB2_uc001olg.2_Missense_Mutation_p.E16Q|RPS6KB2_uc009yrq.2_5'UTR|RPS6KB2_uc001ole.2_RNA|RPS6KB2_uc001olh.2_RNA|RPS6KB2_uc009yrr.2_5'Flank	NM_003952	NP_003943	Q9UBS0	KS6B2_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	16					nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of translational initiation|translation	nucleoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|stomach(1)|lung(1)|salivary_gland(1)	7			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			GGAAGGCAGCGAGGGCGAGGG	0.572													3	22					0	0	6.4e-05	0	0
SUV420H1	51111	broad.mit.edu	37	11	67942631	67942631	+	Silent	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:67942631T>G	uc001onm.1	-	5	653	c.397A>C	c.(397-399)AGG>CGG	p.R133R	SUV420H1_uc009yse.1_5'UTR|SUV420H1_uc001onn.1_5'UTR|SUV420H1_uc009ysf.2_5'UTR|SUV420H1_uc001ono.1_Silent_p.R133R|SUV420H1_uc001onp.2_Silent_p.R133R|SUV420H1_uc010rqa.1_Silent_p.R110R|SUV420H1_uc001onq.2_Silent_p.R133R	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	133					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						TCTTCCTGCCTTCCTTTAATA	0.398													5	33					0	0	0.000602214	0	0
CPT1A	1374	broad.mit.edu	37	11	68542792	68542792	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:68542792G>A	uc001oog.3	-	13	1737	c.1567C>T	c.(1567-1569)CCG>TCG	p.P523S	CPT1A_uc001oof.3_Missense_Mutation_p.P523S|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	523	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	ACTTCCCCCGGGATGTCCCAC	0.522													22	80					0	0	0.000878237	0	0
NAALAD2	10003	broad.mit.edu	37	11	89880517	89880517	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:89880517C>T	uc001pdf.3	+	3	323	c.214C>T	c.(214-216)CAT>TAT	p.H72Y	NAALAD2_uc009yvx.2_Missense_Mutation_p.H72Y|NAALAD2_uc009yvy.2_Missense_Mutation_p.H72Y|NAALAD2_uc001pdd.2_Missense_Mutation_p.H72Y|NAALAD2_uc001pde.2_Missense_Mutation_p.H72Y	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	72	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				AAAGCTTCCTCATCTGGCAGG	0.363													12	38					0	0	0.000151284	0	0
HEPHL1	341208	broad.mit.edu	37	11	93844902	93844902	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:93844902G>A	uc001pep.2	+	20	3479	c.3322G>A	c.(3322-3324)GGT>AGT	p.G1108S	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	1108	Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				CAAGAATCTGGGTCCAACAGG	0.473													9	28					0	0	0.000673444	0	0
MAML2	84441	broad.mit.edu	37	11	95826434	95826434	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:95826434C>G	uc001pfw.1	-	2	2046	c.761G>C	c.(760-762)GGC>GCC	p.G254A		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	254					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				CAGGCCATTGCCAGGAGAATG	0.473			T	MECT1|CRTC3	salivary gland mucoepidermoid								21	33					0	0	0.000229342	0	0
BUD13	84811	broad.mit.edu	37	11	116633380	116633381	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:116633380_116633381GG>TT	uc001ppn.2	-	4	958_959	c.924_925CC>AA	c.(922-927)TCCCAT>TCAAAT	p.H309N	BUD13_uc001ppo.2_Intron|BUD13_uc009yzc.2_Missense_Mutation_p.H309N	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	309										large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		AATGACAAATGGGAGGCTCCTG	0.46													10	396					0	0	6.4e-05	0	0
MLL	4297	broad.mit.edu	37	11	118343920	118343920	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:118343920C>T	uc001pta.2	+	3	2069	c.2046C>T	c.(2044-2046)CTC>CTT	p.L682L	MLL_uc001ptb.2_Silent_p.L682L|MLL_uc001psz.1_Silent_p.L715L|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	682					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		TTTCGCCACTCCATTCTGGAA	0.473			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								24	21					0	0	0.000375601	0	0
BCL9L	283149	broad.mit.edu	37	11	118771497	118771497	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:118771497G>A	uc001pug.2	-	6	3920	c.2955C>T	c.(2953-2955)GTC>GTT	p.V985V	BCL9L_uc009zal.2_Silent_p.V980V	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	985	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		TGGGTGAACGGACACTGAGGG	0.647													21	42					0	0	0.00152264	0	0
OR6T1	219874	broad.mit.edu	37	11	123814341	123814341	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:123814341G>A	uc010sab.1	-	1	205	c.205C>T	c.(205-207)CTG>TTG	p.L69L		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		AACAGCTCCAGGAAGGAGAAA	0.493													15	32					0	0	0.000308642	0	0
ROBO4	54538	broad.mit.edu	37	11	124765755	124765755	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:124765755C>T	uc001qbg.2	-	5	873	c.733G>A	c.(733-735)GAA>AAA	p.E245K	ROBO4_uc010sas.1_Missense_Mutation_p.E100K|ROBO4_uc001qbh.2_Missense_Mutation_p.E135K|ROBO4_uc001qbi.2_5'Flank|ROBO4_uc010sat.1_5'Flank	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	245					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		GTCACATTTTCCAGCTGAATT	0.597													12	27					0	0	0.000978159	0	0
WNT5B	81029	broad.mit.edu	37	12	1749008	1749008	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:1749008G>C	uc009zdq.2	+	4	729	c.487G>C	c.(487-489)GAC>CAC	p.D163H	WNT5B_uc001qjj.2_Missense_Mutation_p.D163H|WNT5B_uc001qjk.2_Missense_Mutation_p.D163H|WNT5B_uc001qjl.2_Missense_Mutation_p.D163H	NM_032642	NP_116031	Q9H1J7	WNT5B_HUMAN	wingless-type MMTV integration site family,	163					angiogenesis|anterior/posterior pattern formation|cell migration involved in gastrulation|cellular response to retinoic acid|chondrocyte differentiation|convergent extension involved in axis elongation|convergent extension involved in gastrulation|dorsal/ventral axis specification|endocrine pancreas development|fat cell differentiation|lens fiber cell development|negative regulation of canonical Wnt receptor signaling pathway|neuron differentiation|positive regulation of cell migration|positive regulation of fat cell differentiation|respiratory system development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding			skin(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00109)			CGGCTGTGGGGACAACGTGGA	0.692													3	30					0	0	6.4e-05	0	0
FGF23	8074	broad.mit.edu	37	12	4479756	4479756	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:4479756T>C	uc001qmq.1	-	3	655	c.509A>G	c.(508-510)AAC>AGC	p.N170S		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	170					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			TATGGGGGTGTTGAAGTGAAT	0.682													14	42					0	0	0.000566183	0	0
FGF6	2251	broad.mit.edu	37	12	4554735	4554735	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:4554735A>C	uc001qmr.1	-	1	46	c.2T>G	c.(1-3)ATG>AGG	p.M1R		NM_020996	NP_066276	P10767	FGF6_HUMAN	fibroblast growth factor 6 precursor	1					angiogenesis|cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	growth factor activity			lung(2)|ovary(1)	3			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)			TCCCAGGGCCATCCACCTTGC	0.562													4	13					0	0	0.00024832	0	0
DYRK4	8798	broad.mit.edu	37	12	4722853	4722853	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:4722853G>T	uc001qmx.2	+	13	1657	c.1497G>T	c.(1495-1497)ATG>ATT	p.M499I	DYRK4_uc001qmy.1_Missense_Mutation_p.M498I|DYRK4_uc001qmz.1_Missense_Mutation_p.M212I|DYRK4_uc001qna.1_Missense_Mutation_p.M135I|DYRK4_uc010ser.1_Missense_Mutation_p.M136I	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	499						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			AGGTGTCCATGACCTCCCCAG	0.547													13	40					4.93089e-13	3.64741e-12	0.000219431	1	0
AKAP3	10566	broad.mit.edu	37	12	4736228	4736228	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:4736228C>T	uc001qnb.3	-	4	2069	c.1840G>A	c.(1840-1842)GAA>AAA	p.E614K		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	614					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						ACCTTGGGTTCAGGGCTCTGG	0.478													9	55					0	0	0.000673444	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376701	8376702	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:8376701_8376702CC>TT	uc001qui.2	-	5	792_793	c.233_234GG>AA	c.(232-234)GGG>GAA	p.G78E	FAM90A1_uc001quh.2_Missense_Mutation_p.G78E	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	78							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		GGTTTTCCTTCCCTTCCTTTTC	0.55													18	180					0	0	6.4e-05	0	0
LOC642846	642846	broad.mit.edu	37	12	9447432	9447432	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:9447432C>G	uc010sgq.1	+	5	513	c.422C>G	c.(421-423)ACA>AGA	p.T141R	LOC642846_uc010sgp.1_RNA|LOC642846_uc009zgn.1_5'UTR|LOC642846_uc001qvo.2_5'UTR					SubName: Full=cDNA FLJ60032, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-);												0						GAAGAAGAAACAGAGAATCTC	0.632													2	3					0	0	6.4e-05	0	0
KLRC3	3823	broad.mit.edu	37	12	10568306	10568306	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:10568306G>A	uc001qyf.2	-	6	720	c.675C>T	c.(673-675)ATC>ATT	p.I225I	KLRC3_uc001qyh.2_Silent_p.I225I|KLRC3_uc001qyi.1_Silent_p.I225I	NM_002261	NP_002252	Q07444	NKG2E_HUMAN	killer cell lectin-like receptor subfamily C,	225	C-type lectin.|Extracellular (Potential).				cellular defense response	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|skin(1)	3						TGCTCACAATGATTCTTGAAG	0.353													19	27					0	0	0.00074312	0	0
KLRC1	3821	broad.mit.edu	37	12	10603144	10603144	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:10603144C>T	uc001qyl.2	-	3	386	c.222G>A	c.(220-222)GGG>GGA	p.G74G	KLRC1_uc009zhm.1_Silent_p.G74G|KLRC1_uc001qym.2_Silent_p.G74G|KLRC1_uc001qyn.2_Silent_p.G74G|KLRC1_uc001qyo.2_Silent_p.G74G	NM_002259	NP_002250	P26715	NKG2A_HUMAN	killer cell lectin-like receptor subfamily C,	74	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0						TTCCCAGGATCCCAACAATGA	0.428													32	81					0	0	0.000692331	0	0
PRB2	653247	broad.mit.edu	37	12	11546815	11546815	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:11546815T>C	uc010shk.1	-	3	232	c.197A>G	c.(196-198)AAC>AGC	p.N66S		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGAGGCTGGTTGCCTCCTTG	0.597													10	101					0	0	0.000958276	0	0
PDE3A	5139	broad.mit.edu	37	12	20833091	20833091	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:20833091G>A	uc001reh.1	+	16	3334	c.3312G>A	c.(3310-3312)CTG>CTA	p.L1104L		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	1104					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	ATCAATCCCTGGACCAGACCC	0.473													13	86					0	0	0.000151284	0	0
PKP2	5318	broad.mit.edu	37	12	32945371	32945371	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:32945371G>A	uc001rlj.3	-	14	2748	c.2633C>T	c.(2632-2634)TCC>TTC	p.S878F	PKP2_uc001rlk.3_Missense_Mutation_p.S834F|PKP2_uc010skj.1_Missense_Mutation_p.S831F	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	878					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GTCTTTAAGGGAGTGGTAGGC	0.423													6	65					0	0	0.000274275	0	0
C12orf40	283461	broad.mit.edu	37	12	40040150	40040150	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:40040150C>T	uc001rmc.2	+	4	389	c.222C>T	c.(220-222)ACC>ACT	p.T74T	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	74										ovary(6)	6						GAAAACCAACCCATGTGAACA	0.269													7	25					0	0	8.12818e-05	0	0
CNTN1	1272	broad.mit.edu	37	12	41333180	41333180	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:41333180C>T	uc001rmm.1	+	12	1385	c.1272C>T	c.(1270-1272)ATC>ATT	p.I424I	CNTN1_uc009zjy.1_Silent_p.I424I|CNTN1_uc001rmn.1_Silent_p.I413I|CNTN1_uc001rmo.2_Silent_p.I424I	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	424	Ig-like C2-type 5.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				AGAAAAAGATCCTGGCTGCTA	0.378													8	26					0	0	0.000274275	0	0
ARID2	196528	broad.mit.edu	37	12	46230571	46230571	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:46230571C>T	uc001ros.1	+	8	820	c.820C>T	c.(820-822)CGA>TGA	p.R274*	ARID2_uc001ror.2_Nonsense_Mutation_p.R274*|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_5'Flank|ARID2_uc001rot.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	274					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TCATCCACCTCGAAAGCTGGG	0.363													13	61					0	0	0.000151284	0	0
ARID2	196528	broad.mit.edu	37	12	46244796	46244796	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:46244796G>T	uc001ros.1	+	15	2890	c.2890G>T	c.(2890-2892)GGA>TGA	p.G964*	ARID2_uc001ror.2_Nonsense_Mutation_p.G964*|ARID2_uc009zkg.1_Nonsense_Mutation_p.G420*|ARID2_uc009zkh.1_Nonsense_Mutation_p.G591*|ARID2_uc001rou.1_Nonsense_Mutation_p.G298*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	964	Gln-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TCAGCTAACTGGACAACCTAA	0.483													26	80					2.41591e-17	1.79112e-16	0.000720815	1	0
MLL2	8085	broad.mit.edu	37	12	49434137	49434137	+	Silent	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:49434137G>C	uc001rta.3	-	31	7416	c.7416C>G	c.(7414-7416)CCC>CCG	p.P2472P		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2472	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CAGGGGGCTGGGGTCGGGGTG	0.662			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			20	79					0	0	0.00121646	0	0
KCNH3	23416	broad.mit.edu	37	12	49938144	49938144	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:49938144G>A	uc001ruh.1	+	7	1428	c.1168G>A	c.(1168-1170)GAA>AAA	p.E390K	KCNH3_uc010smj.1_Missense_Mutation_p.E330K	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	390	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						CGAGAGCAGCGAATCCGAGCT	0.622													10	40					0	0	0.000673444	0	0
SMAGP	57228	broad.mit.edu	37	12	51639802	51639802	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:51639802C>T	uc001ryc.1	-	3	888	c.217G>A	c.(217-219)GAA>AAA	p.E73K	SMAGP_uc001ryd.1_Missense_Mutation_p.E73K|SMAGP_uc001rye.1_Missense_Mutation_p.E73K|SMAGP_uc001ryf.1_RNA|DAZAP2_uc010snf.1_Intron	NM_001033873	NP_001029045	Q0VAQ4	SMAGP_HUMAN	small trans-membrane and glycosylated protein	73	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|plasma membrane					0						GGCTCACCTTCTGTAGGTTCA	0.502													20	53					0	0	0.000229342	0	0
SLC4A8	9498	broad.mit.edu	37	12	51864226	51864226	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:51864226C>T	uc001rys.1	+	13	1753	c.1575C>T	c.(1573-1575)TCC>TCT	p.S525S	SLC4A8_uc010sni.1_Silent_p.S472S|SLC4A8_uc001rym.2_Silent_p.S472S|SLC4A8_uc001ryn.2_Silent_p.S472S|SLC4A8_uc001ryo.2_Silent_p.S472S|SLC4A8_uc010snj.1_Silent_p.S552S|SLC4A8_uc001ryq.3_Silent_p.S525S|SLC4A8_uc001ryr.2_Silent_p.S525S|SLC4A8_uc010snk.1_Silent_p.S472S	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	525	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		TTGCTTATTCCTTGTTTGCGG	0.423													17	49					0	0	0.000566183	0	0
KRT82	3888	broad.mit.edu	37	12	52788966	52788966	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:52788966G>A	uc001sai.1	-	9	1450	c.1335C>T	c.(1333-1335)TCC>TCT	p.S445S		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	445	Tail.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		AGGCGCCTTTGGAGCTGCTCA	0.627													9	12					0	0	0.000978159	0	0
KRT8	3856	broad.mit.edu	37	12	53292506	53292506	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:53292506C>T	uc001sbd.2	-	6	1262	c.1159G>A	c.(1159-1161)GAG>AAG	p.E387K	KRT8_uc009zmj.2_Intron|KRT8_uc009zmk.1_Missense_Mutation_p.E415K|KRT8_uc009zml.1_Missense_Mutation_p.E387K|KRT8_uc009zmm.1_Missense_Mutation_p.E387K	NM_002273	NP_002264	P05787	K2C8_HUMAN	keratin 8	387	Rod.|Coil 2.			E -> D (in Ref. 2; AAA35748).	cytoskeleton organization|interspecies interaction between organisms	cytoplasm|keratin filament|nuclear matrix|nucleoplasm	protein binding|structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.108)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTGGCGATCTCGATGTCCAGG	0.667													13	62					0	0	0.000566183	0	0
AMHR2	269	broad.mit.edu	37	12	53823689	53823689	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:53823689C>T	uc001scx.1	+	9	1293	c.1215C>T	c.(1213-1215)CTC>CTT	p.L405L	AMHR2_uc009zmy.1_Silent_p.L405L	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	405	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	GCATGGCCCTCCGACGAGCTG	0.577									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				13	45					0	0	0.00136819	0	0
DGKA	1606	broad.mit.edu	37	12	56334205	56334205	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:56334205G>A	uc001sij.2	+	11	1170	c.906G>A	c.(904-906)TGG>TGA	p.W302*	DGKA_uc009zoc.1_Nonsense_Mutation_p.W302*|DGKA_uc001sih.1_Nonsense_Mutation_p.W190*|DGKA_uc001sii.1_Nonsense_Mutation_p.W160*|DGKA_uc009zod.1_Nonsense_Mutation_p.W221*|DGKA_uc009zoe.1_3'UTR|DGKA_uc001sik.2_Nonsense_Mutation_p.W302*|DGKA_uc001sil.2_Nonsense_Mutation_p.W302*|DGKA_uc001sim.2_Nonsense_Mutation_p.W302*|DGKA_uc001sin.2_Nonsense_Mutation_p.W302*|DGKA_uc009zof.2_Translation_Start_Site|DGKA_uc001sio.2_Nonsense_Mutation_p.W44*	NM_001345	NP_001336	P23743	DGKA_HUMAN	diacylglycerol kinase, alpha 80kDa	302	Phorbol-ester/DAG-type 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			ovary(3)|pancreas(1)	4					Vitamin E(DB00163)	ATTGTGTATGGTGCCACCTAG	0.612											OREG0021913	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	69					0	0	0.000339439	0	0
SLC26A10	65012	broad.mit.edu	37	12	58014159	58014159	+	Silent	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:58014159G>T	uc001spe.2	+	1	467	c.156G>T	c.(154-156)CCG>CCT	p.P52P	uc001spc.2_5'Flank|SLC26A10_uc001spf.2_RNA	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	52	Helical; (Potential).					integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					CCGTGCCCCCGGTGTTTGGAC	0.562													8	484					0.000442599	0.00320505	0.000442599	1	0
LRIG3	121227	broad.mit.edu	37	12	59307766	59307766	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:59307766G>A	uc001sqr.2	-	3	626	c.380C>T	c.(379-381)TCC>TTC	p.S127F	LRIG3_uc009zqh.2_Missense_Mutation_p.S67F|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	127	LRR 3.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			CACTTACAAGGAGAGAAGTGT	0.378													12	85					0	0	0.000151284	0	0
TRHDE	29953	broad.mit.edu	37	12	73015511	73015511	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:73015511G>A	uc001sxa.2	+	15	2550	c.2520G>A	c.(2518-2520)TGG>TGA	p.W840*		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	840	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTTCAGATTGGATTTCCAGCA	0.388													6	18					0	0	0.00116845	0	0
SYT1	6857	broad.mit.edu	37	12	79689912	79689912	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:79689912C>T	uc001sys.2	+	8	1209	c.538C>T	c.(538-540)CCT>TCT	p.P180S	SYT1_uc001syt.2_Missense_Mutation_p.P180S|SYT1_uc001syu.2_Missense_Mutation_p.P177S|SYT1_uc001syv.2_Missense_Mutation_p.P180S	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	180	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 1.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						CACATCTGATCCTTACGTGAA	0.423													18	46					0	0	0.000958276	0	0
MIR1252	100302136	broad.mit.edu	37	12	79813046	79813046	+	RNA	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:79813046G>A	hsa-mir-1252|MI0006434	+			c.10G>A			SYT1_uc001sys.2_Intron|SYT1_uc001syt.2_Intron|SYT1_uc001syu.2_Intron|SYT1_uc001syv.2_Intron																	0						TAGAAAGAAGGAAATTGAATT	0.303													5	16					0	0	0.000602214	0	0
MGAT4C	25834	broad.mit.edu	37	12	86377306	86377306	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:86377306C>T	uc001tai.3	-	7	1540	c.290G>A	c.(289-291)AGA>AAA	p.R97K	MGAT4C_uc001tal.3_Missense_Mutation_p.R97K|MGAT4C_uc001taj.3_Missense_Mutation_p.R97K|MGAT4C_uc001tak.3_Missense_Mutation_p.R97K|MGAT4C_uc010sum.1_Missense_Mutation_p.R121K|MGAT4C_uc001tah.3_Missense_Mutation_p.R97K	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	97	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						CTTACGCTTTCTTTGTAAAGG	0.318													42	145					0	0	0.000781405	0	0
ANKS1B	56899	broad.mit.edu	37	12	99640444	99640444	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:99640444G>A	uc001tge.1	-	13	2372	c.1955C>T	c.(1954-1956)CCA>CTA	p.P652L	ANKS1B_uc001tgf.1_Missense_Mutation_p.P232L|ANKS1B_uc001tgk.2_5'UTR|ANKS1B_uc009ztt.1_Missense_Mutation_p.P618L	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	652						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		ATTTTCTATTGGAGACTGCTT	0.363													10	51					0	0	0.000442599	0	0
IGF1	3479	broad.mit.edu	37	12	102813337	102813337	+	Missense_Mutation	SNP	C	T	T	rs151098426	byFrequency	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:102813337C>T	uc001tjp.3	-	3	571	c.352G>A	c.(352-354)GCT>ACT	p.A118T	IGF1_uc001tjn.2_Missense_Mutation_p.A102T|IGF1_uc001tjm.2_Missense_Mutation_p.A118T|IGF1_uc001tjo.2_Missense_Mutation_p.A118T	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	118	D.				anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						ACAGAGCGAGCTGACTTGGCA	0.607													9	42					0	0	0.000442599	0	0
CUX2	23316	broad.mit.edu	37	12	111744811	111744811	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:111744811G>A	uc001tsa.1	+	11	1098	c.945G>A	c.(943-945)AAG>AAA	p.K315K		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	315	Potential.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GGCTGCTGAAGGACGTGCAGC	0.657													27	49					0	0	0.000720815	0	0
CUX2	23316	broad.mit.edu	37	12	111779730	111779730	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:111779730G>A	uc001tsa.1	+	21	3685	c.3532G>A	c.(3532-3534)GAG>AAG	p.E1178K		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1178	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCTGGCACCCGAGGAGAAGGA	0.652													12	52					0	0	0.000219431	0	0
OAS3	4940	broad.mit.edu	37	12	113403667	113403667	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:113403667C>T	uc001tug.2	+	12	2609	c.2522C>T	c.(2521-2523)TCC>TTC	p.S841F		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	841	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						GAGATCATCTCCGAGATCCGA	0.597													5	19					0	0	0.00116845	0	0
TBX5	6910	broad.mit.edu	37	12	114793661	114793661	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:114793661G>A	uc001tvo.2	-	9	1728	c.1233C>T	c.(1231-1233)ACC>ACT	p.T411T	TBX5_uc001tvp.2_Silent_p.T411T|TBX5_uc001tvq.2_Silent_p.T361T	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	411					cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		CGGTGGTGACGGTGCAGCTGC	0.652													12	42					0	0	0.00136819	0	0
KSR2	283455	broad.mit.edu	37	12	117962863	117962863	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:117962863G>A	uc001two.2	-	14	1981	c.1926C>T	c.(1924-1926)CTC>CTT	p.L642L		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	671	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCTTTCCAATGAGCTCGCCGA	0.622													8	33					0	0	0.000274275	0	0
KSR2	283455	broad.mit.edu	37	12	118198893	118198894	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:118198893_118198894CG>AT	uc001two.2	-	4	876_877	c.821_822CG>AT	c.(820-822)CCG>CAT	p.P274H		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	303					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGGTGAATCCCGGGATCAAGTG	0.663													7	164					0	0	6.4e-05	0	0
C12orf43	64897	broad.mit.edu	37	12	121441993	121441994	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:121441993_121441994GG>TT	uc001tzh.1	-	6	774_775	c.751_752CC>AA	c.(751-753)CCA>AAA	p.P251K	C12orf43_uc009zxa.1_Missense_Mutation_p.P282K|C12orf43_uc010szo.1_Missense_Mutation_p.P210K|C12orf43_uc010szp.1_Missense_Mutation_p.P241K|C12orf43_uc001tzi.1_Missense_Mutation_p.P252K	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	251											0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CTTTGCTGGTGGGAATGGAGAG	0.569													12	470					0	0	6.4e-05	0	0
EIF2B1	1967	broad.mit.edu	37	12	124114968	124114968	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:124114968G>A	uc001ufm.2	-	3	371	c.228C>T	c.(226-228)ATC>ATT	p.I76I	EIF2B1_uc001ufn.2_Silent_p.I76I|EIF2B1_uc010tat.1_Silent_p.I76I	NM_001414	NP_001405	Q14232	EI2BA_HUMAN	eukaryotic translation initiation factor 2B,	76					cellular response to stimulus|oligodendrocyte development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex|membrane fraction|plasma membrane	protein binding|translation initiation factor activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.67e-05)|Epithelial(86;0.000353)|all cancers(50;0.00489)		AGGCAAGACTGATGAAGCGGA	0.537													6	37					0	0	8.12818e-05	0	0
NCOR2	9612	broad.mit.edu	37	12	124816908	124816908	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr12:124816908G>C	uc010tay.1	-	45	7047	c.6891C>G	c.(6889-6891)ATC>ATG	p.I2297M	NCOR2_uc010taz.1_Missense_Mutation_p.I2281M|NCOR2_uc010tax.1_Missense_Mutation_p.I408M	NM_006312	NP_006303	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 1	2298					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GCTTCTTGTTGATCTCTTGCT	0.602											OREG0022237	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	91					0	0	0.000442599	0	0
LOC374491	374491	broad.mit.edu	37	13	25144805	25144805	+	RNA	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:25144805C>T	uc001upm.2	+	4		c.346C>T								Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						GGGTCCTGGTCCTGCCATGGG	0.463													15	43					0	0	0.000219431	0	0
FLT3	2322	broad.mit.edu	37	13	28631575	28631575	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:28631575C>T	uc001urw.2	-	4	475	c.393G>A	c.(391-393)TTG>TTA	p.L131L	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.L131L	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	131	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	CTGTCATTTTCAAAATGACCA	0.323			Mis|O		AML|ALL								13	47					0	0	0.000422831	0	0
SLC46A3	283537	broad.mit.edu	37	13	29284912	29284912	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:29284912G>A	uc001usi.2	-	3	2099	c.1129C>T	c.(1129-1131)CGT>TGT	p.R377C	SLC46A3_uc001usg.2_Missense_Mutation_p.R302C|SLC46A3_uc001usj.2_Missense_Mutation_p.R377C|SLC46A3_uc001ush.2_Missense_Mutation_p.R377C|SLC46A3_uc001usk.2_3'UTR	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	377	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		TCAGTCGAACGAACCACTTTT	0.388													25	116					0	0	0.00106085	0	0
MTUS2	23281	broad.mit.edu	37	13	29599311	29599311	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:29599311C>T	uc001usl.3	+	1	564	c.506C>T	c.(505-507)CCC>CTC	p.P169L		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	159						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CGGCATGTTCCCAAGGATAAA	0.507													20	74					0	0	0.000375601	0	0
TRIM13	10206	broad.mit.edu	37	13	50586282	50586282	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:50586282T>C	uc001vdq.1	+	3	519	c.206T>C	c.(205-207)CTG>CCG	p.L69P	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|TRIM13_uc001vdp.1_Missense_Mutation_p.L72P|TRIM13_uc001vdr.1_Missense_Mutation_p.L69P|TRIM13_uc001vds.1_Missense_Mutation_p.L69P	NM_052811	NP_434698	O60858	TRI13_HUMAN	ret finger protein 2 isoform 1	69					anatomical structure morphogenesis|ER-associated protein catabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination	cytoplasm|endoplasmic reticulum membrane|integral to membrane	protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.53e-10)|COAD - Colon adenocarcinoma(199;0.205)		ATTAATAGCCTGCAGGTTAAT	0.458													4	62					0	0	0.00024832	0	0
DIAPH3	81624	broad.mit.edu	37	13	60737783	60737783	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:60737783C>T	uc001vht.2	-	1	337	c.118G>A	c.(118-120)GGC>AGC	p.G40S	DIAPH3_uc001vhw.1_Missense_Mutation_p.G40S|DIAPH3_uc010aed.1_Missense_Mutation_p.G40S|DIAPH3_uc010aee.1_Missense_Mutation_p.G40S	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	40					actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		TGTTGGGGGCCCTTCCTGCGC	0.711													7	43					0	0	0.000442599	0	0
KLHL1	57626	broad.mit.edu	37	13	70371071	70371071	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:70371071C>T	uc001vip.2	-	7	2232	c.1438G>A	c.(1438-1440)GAT>AAT	p.D480N	KLHL1_uc010thm.1_Missense_Mutation_p.D419N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	480	Kelch 1.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GTTCTCAGATCATATTTCTCT	0.388													22	100					0	0	0.000375601	0	0
PIBF1	10464	broad.mit.edu	37	13	73409495	73409495	+	Silent	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:73409495A>G	uc001vjc.2	+	9	1517	c.1212A>G	c.(1210-1212)GAA>GAG	p.E404E	PIBF1_uc001vja.1_Silent_p.E404E|PIBF1_uc010aeo.1_RNA|PIBF1_uc001vjb.2_Silent_p.E404E|PIBF1_uc010aep.2_5'UTR	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	404						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		AAATGTATGAACGAGAAAACA	0.269													33	91					0	0	0.000814825	0	0
SCEL	8796	broad.mit.edu	37	13	78177246	78177246	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:78177246C>T	uc001vki.2	+	18	1243	c.1073C>T	c.(1072-1074)CCC>CTC	p.P358L	SCEL_uc001vkj.2_Missense_Mutation_p.P338L|SCEL_uc010thx.1_Missense_Mutation_p.P336L	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	358	16 X approximate tandem repeats.|6.				embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		GAAGTAAATCCCAAAGGACAT	0.279													13	46					0	0	0.000422831	0	0
SLITRK6	84189	broad.mit.edu	37	13	86369351	86369351	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:86369351G>A	uc001vll.1	-	2	1752	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	431	Extracellular (Potential).|LRR 8.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		GGAGACCAAGGAACATGCCTT	0.348													6	22					0	0	0.00116845	0	0
FARP1	10160	broad.mit.edu	37	13	99020412	99020412	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:99020412C>A	uc001vnj.2	+	5	697	c.361C>A	c.(361-363)CCG>ACG	p.P121T	FARP1_uc001vnh.2_Missense_Mutation_p.P121T	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	121	FERM.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			GAAATTCTTTCCGCCTGACCA	0.368													12	44					4.14922e-12	3.06227e-11	0.000422831	1	0
TFDP1	7027	broad.mit.edu	37	13	114287495	114287495	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr13:114287495C>T	uc001vtw.2	+	6	581	c.369C>T	c.(367-369)GTC>GTT	p.V123V	TFDP1_uc010tkd.1_Silent_p.V28V|TFDP1_uc010tke.1_Silent_p.V28V|TFDP1_uc001vty.3_Silent_p.V123V|TFDP1_uc001vtx.2_Silent_p.V3V|TFDP1_uc010agx.2_Silent_p.V123V	NM_007111	NP_009042	Q14186	TFDP1_HUMAN	transcription factor Dp-1	123	Potential.				cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			lung(4)|ovary(2)|skin(1)	7	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.132)|all_epithelial(44;0.0731)|all_lung(25;0.149)|Breast(118;0.153)	all cancers(43;0.0576)			CCATGAAGGTCTGCGAGAAGG	0.517										TSP Lung(29;0.18)			9	27					0	0	0.000442599	0	0
OR4K5	79317	broad.mit.edu	37	14	20389309	20389309	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:20389309C>T	uc010tkw.1	+	1	544	c.544C>T	c.(544-546)CCT>TCT	p.P182S		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTGTGATCTTCCTCGAGTCAC	0.423													13	107					0	0	0.000219431	0	0
OR11H4	390442	broad.mit.edu	37	14	20711921	20711921	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:20711921C>T	uc010tld.1	+	1	971	c.971C>T	c.(970-972)TCG>TTG	p.S324L		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	324	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		CGTCAAAATTCGTGAGCCAAA	0.398													5	51					0	0	0.000602214	0	0
TEP1	7011	broad.mit.edu	37	14	20854292	20854292	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:20854292G>A	uc001vxe.2	-	20	2964	c.2924C>T	c.(2923-2925)TCC>TTC	p.S975F	TEP1_uc010ahk.2_Missense_Mutation_p.S325F|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.S867F	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	975					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TCCATAACGGGAGCCCAGAAT	0.557													27	51					0	0	0.00127121	0	0
OR4E2	26686	broad.mit.edu	37	14	22134223	22134223	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:22134223G>A	uc010tmd.1	+	1	927	c.927G>A	c.(925-927)ACG>ACA	p.T309T		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TTTTTTTCACGAAATCATATA	0.393													6	20					0	0	0.000157383	0	0
MYH7	4625	broad.mit.edu	37	14	23888777	23888777	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:23888777C>T	uc001wjx.2	-	28	3874	c.3768G>A	c.(3766-3768)ATG>ATA	p.M1256I	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1256	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GGTGCTCATTCATCTGGTCTT	0.572													40	124					0	0	0.000589545	0	0
LTB4R	1241	broad.mit.edu	37	14	24785488	24785488	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:24785488C>G	uc001wos.2	+	2	952	c.631C>G	c.(631-633)CGG>GGG	p.R211G	LTB4R_uc010alp.2_Missense_Mutation_p.R211G|LTB4R_uc001wou.2_Missense_Mutation_p.R211G	NM_001143919	NP_001137391	Q15722	LT4R1_HUMAN	leukotriene B4 receptor	211	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular component movement|immune response|inflammatory response|muscle contraction	integral to plasma membrane	nucleotide binding				0				GBM - Glioblastoma multiforme(265;0.018)		GCTACAGGCCCGGCGCTTCCG	0.672													8	34					0	0	0.000157383	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885107	24885107	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:24885107C>T	uc001wpf.3	+	9	4470	c.4152C>T	c.(4150-4152)CTC>CTT	p.L1384L		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1384	Helical; (Potential).				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TCTTCAGCCTCCTGTGGGAGC	0.627													20	59					0	0	0.000958276	0	0
MGAT2	4247	broad.mit.edu	37	14	50089148	50089149	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:50089148_50089149CC>TT	uc001wwr.2	+	1	1660_1661	c.1162_1163CC>TT	c.(1162-1164)CCA>TTA	p.P388L	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	388	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					AACCTGTAGACCATCCACTCAG	0.391													12	65					0	0	6.4e-05	0	0
KCNH5	27133	broad.mit.edu	37	14	63316527	63316527	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:63316527G>A	uc001xfx.2	-	8	1464	c.1413C>T	c.(1411-1413)TTC>TTT	p.F471F	KCNH5_uc001xfy.2_Silent_p.F471F|KCNH5_uc001xfz.1_Silent_p.F413F	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	471	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		ACATTTGCTGGAAAATTGTTG	0.348													10	51					0	0	0.000673444	0	0
GPHN	10243	broad.mit.edu	37	14	67490378	67490378	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:67490378A>G	uc001xiy.2	+	9	2014	c.893A>G	c.(892-894)AAC>AGC	p.N298S	GPHN_uc001xiw.2_Missense_Mutation_p.N313S|GPHN_uc001xix.2_Missense_Mutation_p.N331S|GPHN_uc010tss.1_Missense_Mutation_p.N344S|GPHN_uc010tst.1_Missense_Mutation_p.N267S|GPHN_uc010tsu.1_Missense_Mutation_p.N221S	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	298	Interaction with GABARAP (By similarity).				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		AGCAAGGAGAACATTCTCAGA	0.378			T	MLL	AL								6	21					0	0	0.000157383	0	0
C14orf43	91748	broad.mit.edu	37	14	74206625	74206625	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:74206625G>A	uc001xot.2	-	2	870	c.87C>T	c.(85-87)CCC>CCT	p.P29P	C14orf43_uc001xou.2_Silent_p.P29P|C14orf43_uc010tud.1_Silent_p.P29P|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	29					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		GCAGGGGAGGGGGCTGCTCCT	0.652													10	40					0	0	0.000673444	0	0
YLPM1	56252	broad.mit.edu	37	14	75249025	75249025	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:75249025C>T	uc001xqj.3	+	4	2403	c.2279C>T	c.(2278-2280)CCA>CTA	p.P760L	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	565					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CCAAGAGGCCCAAGGTAGGTC	0.413													12	65					0	0	0.000151284	0	0
SPTLC2	9517	broad.mit.edu	37	14	78043202	78043202	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:78043202C>G	uc001xub.2	-	4	727	c.539G>C	c.(538-540)GGA>GCA	p.G180A		NM_004863	NP_004854	O15270	SPTC2_HUMAN	serine palmitoyltransferase, long chain base	180						integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			upper_aerodigestive_tract(1)|ovary(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0346)	L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	CCGTGCAAATCCAAGATAGTT	0.413													28	196					0	0	0.00106085	0	0
TDP1	55775	broad.mit.edu	37	14	90429640	90429640	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:90429640C>T	uc001xxy.2	+	3	481	c.182C>T	c.(181-183)TCA>TTA	p.S61L	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Missense_Mutation_p.S61L|TDP1_uc010atn.2_Missense_Mutation_p.S61L|TDP1_uc001xya.2_5'UTR|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Missense_Mutation_p.S61L|TDP1_uc001xyc.1_Missense_Mutation_p.S61L	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	61					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		AGGAAAATATCACCTGTGAAA	0.507								Repair_of_DNA-protein_crosslinks					24	58					0	0	0.000586117	0	0
KIAA1409	57578	broad.mit.edu	37	14	94158199	94158199	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:94158199G>A	uc001ybv.1	+	45	7112	c.7029G>A	c.(7027-7029)CAG>CAA	p.Q2343Q	KIAA1409_uc001ybs.1_Silent_p.Q2321Q	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2498						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TCCAAAATCAGAATGAATTCA	0.488													28	58					0	0	0.00127121	0	0
ATG2B	55102	broad.mit.edu	37	14	96792033	96792033	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:96792033G>A	uc001yfi.2	-	15	2755	c.2390C>T	c.(2389-2391)TCA>TTA	p.S797L		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	797										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		TTCTGGGGTTGATCCTCCTAT	0.353													12	26					0	0	0.000151284	0	0
AK7	122481	broad.mit.edu	37	14	96917817	96917817	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:96917817G>A	uc001yfn.2	+	10	1052	c.1008G>A	c.(1006-1008)GAG>GAA	p.E336E		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	336	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		TTGTGAAGGAGAATTTTAATA	0.373													16	37					0	0	0.000958276	0	0
SETD3	84193	broad.mit.edu	37	14	99879362	99879362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:99879362G>A	uc001ygc.2	-	8	945	c.775C>T	c.(775-777)CCC>TCC	p.P259S	SETD3_uc001ygd.2_Missense_Mutation_p.P259S|SETD3_uc001ygf.2_Missense_Mutation_p.P259S	NM_032233	NP_115609	Q86TU7	SETD3_HUMAN	SET domain containing 3 isoform a	259	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|peptidyl-lysine trimethylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone methyltransferase activity (H3-K36 specific)|transcription coactivator activity				0		all_cancers(154;0.224)|all_epithelial(191;0.0644)|Melanoma(154;0.0866)				TCCTCTGTGGGAATTTGGTTT	0.463													8	54					0	0	0.000274275	0	0
ADAM6	8755	broad.mit.edu	37	14	106311869	106311869	+	RNA	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr14:106311869C>T	uc010tyt.1	-	3608		c.57054G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Missense_Mutation_p.S62N|uc001ysk.1_Missense_Mutation_p.S62N|uc001ysl.1_Missense_Mutation_p.S62N|uc001ysm.1_Missense_Mutation_p.S5N|uc001ysn.1_Missense_Mutation_p.S5N|uc001yso.1_Missense_Mutation_p.S5N					Parts of antibodies, mostly variable regions.												0						CTGGGGCTGGCTCTGTGTCCC	0.582													8	48					0	0	0.000442599	0	0
Unknown	0	broad.mit.edu	37	15	20488888	20488888	+	RNA	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:20488888G>A	uc001ytf.1	+	2		c.371G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		GACTGCTGGAGTTTAGGAGTT	0.398													7	97					0	0	0.000274275	0	0
OR4M2	390538	broad.mit.edu	37	15	22369022	22369022	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:22369022G>A	uc010tzu.1	+	1	447	c.447G>A	c.(445-447)TGG>TGA	p.W149*	LOC727924_uc001yua.2_RNA|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CTCTCTCCTGGAGGGGGGGCT	0.502													10	147					0	0	0.000442599	0	0
OR4N4	283694	broad.mit.edu	37	15	22382676	22382676	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:22382676C>T	uc001yuc.1	+	7	1185	c.204C>T	c.(202-204)TTC>TTT	p.F68F	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.F68F	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ACTTGGCCTTCCTGGATGCAT	0.483													29	269					0	0	0.000374591	0	0
C15orf2	23742	broad.mit.edu	37	15	24922598	24922598	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:24922598C>T	uc001ywo.2	+	1	2058	c.1584C>T	c.(1582-1584)TCC>TCT	p.S528S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	528	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTCCTCTTTCCTTCCTGACTC	0.532													34	115					0	0	0.000692331	0	0
AQR	9716	broad.mit.edu	37	15	35192853	35192853	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:35192853T>C	uc001ziv.2	-	20	2394	c.2213A>G	c.(2212-2214)GAA>GGA	p.E738G		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	738						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		AGCAGGGTCTTCTACAGTTAC	0.428													16	48					0	0	0.000308642	0	0
RPAP1	26015	broad.mit.edu	37	15	41813125	41813125	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:41813125G>A	uc001zod.2	-	22	3383	c.3259C>T	c.(3259-3261)CTG>TTG	p.L1087L	RPAP1_uc001zoc.2_Silent_p.L106L	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	1087	Leu-rich.					nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		GGCAGTAGCAGGGTTGGGACT	0.657													24	48					0	0	0.000720815	0	0
RPAP1	26015	broad.mit.edu	37	15	41819162	41819162	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:41819162G>A	uc001zod.2	-	14	1975	c.1851C>T	c.(1849-1851)CCC>CCT	p.P617P	RPAP1_uc001zoc.2_5'Flank	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	617						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CAGTAGCACAGGGTACTTTGT	0.567													37	74					0	0	0.000814825	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42302357	42302357	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:42302357C>T	uc001zow.1	-	1	89	c.89G>A	c.(88-90)GGT>GAT	p.G30D		NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	Error:Variant_position_missing_in_Q3MJ16_after_alignment					phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		CTGGACCACACCCTTCAGGTC	0.597													10	46					0	0	0.000442599	0	0
TMEM87A	25963	broad.mit.edu	37	15	42523438	42523438	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:42523438G>A	uc010udd.1	-	12	1242	c.1083C>T	c.(1081-1083)TCC>TCT	p.S361S	TMEM87A_uc001zpf.3_Silent_p.S300S	NM_015497	NP_056312	Q8NBN3	TM87A_HUMAN	transmembrane protein 87A isoform 1	361						integral to membrane				ovary(1)	1		all_cancers(109;4.28e-16)|all_epithelial(112;1.04e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;1.03e-06)		TAAAGGCCAAGGAAGCAAGAT	0.458													8	43					0	0	0.000274275	0	0
TTBK2	146057	broad.mit.edu	37	15	43045125	43045125	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:43045125G>A	uc001zqo.2	-	14	2758	c.2319C>T	c.(2317-2319)CTC>CTT	p.L773L	TTBK2_uc010bcy.2_Silent_p.L704L	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	773					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		TTTCCCCAGGGAGATTTTCAA	0.398													43	95					0	0	0.000374591	0	0
UBR1	197131	broad.mit.edu	37	15	43317039	43317039	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:43317039C>T	uc001zqq.2	-	25	2793	c.2727G>A	c.(2725-2727)GGG>GGA	p.G909G	UBR1_uc010udk.1_Silent_p.G909G	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	909					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		TTTGGAGCATCCCTTCGGTCC	0.423													38	115					0	0	0.00148497	0	0
MAP1A	4130	broad.mit.edu	37	15	43822318	43822318	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:43822318C>G	uc001zrt.2	+	6	8775	c.8308C>G	c.(8308-8310)CAA>GAA	p.Q2770E		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2770						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GTGGTACCAACAAACTCATGA	0.498													9	76					0	0	0.000274275	0	0
DUOX1	53905	broad.mit.edu	37	15	45427789	45427789	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:45427789T>A	uc001zus.1	+	7	959	c.613T>A	c.(613-615)TTT>ATT	p.F205I	DUOX1_uc001zut.1_Missense_Mutation_p.F205I|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	205	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CGACCCCGCTTTTCCCCGAGA	0.721													4	5					0	0	0.00024832	0	0
SQRDL	58472	broad.mit.edu	37	15	45965918	45965918	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:45965918C>T	uc001zvt.2	+	6	762	c.573C>T	c.(571-573)ATC>ATT	p.I191I	SQRDL_uc001zvu.2_Silent_p.I191I|SQRDL_uc001zvv.2_Silent_p.I191I	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	191							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		GCAATGCCATCTTCACCTTCC	0.463													10	79					0	0	0.000442599	0	0
COPS2	9318	broad.mit.edu	37	15	49426144	49426144	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:49426144G>A	uc001zxf.2	-	8	956	c.877C>T	c.(877-879)CCA>TCA	p.P293S	COPS2_uc001zxh.2_Missense_Mutation_p.P300S|COPS2_uc010ufa.1_Missense_Mutation_p.P229S	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	293	PCI.				cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		GAGTCAAATGGATTTATTCCC	0.313													11	48					0	0	0.00136819	0	0
SLC27A2	11001	broad.mit.edu	37	15	50519297	50519297	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:50519297A>T	uc001zxw.2	+	7	1611	c.1379A>T	c.(1378-1380)TAT>TTT	p.Y460F	SLC27A2_uc010bes.2_Missense_Mutation_p.Y407F|SLC27A2_uc001zxx.2_Missense_Mutation_p.Y225F	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	460	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		GGAGACCTCTATTTCAACAGT	0.383													23	38					0	0	0.000375601	0	0
USP8	9101	broad.mit.edu	37	15	50782595	50782595	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:50782595C>T	uc001zym.3	+	15	2607	c.2107C>T	c.(2107-2109)CCT>TCT	p.P703S	USP8_uc001zyl.3_Missense_Mutation_p.P703S|USP8_uc001zyn.3_Missense_Mutation_p.P703S|USP8_uc010ufh.1_Missense_Mutation_p.P597S|USP8_uc001zyp.3_5'Flank	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	703					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		GCCACAGATTCCTGCTGAGCG	0.512													30	70					0	0	0.00178596	0	0
CGNL1	84952	broad.mit.edu	37	15	57731026	57731026	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:57731026C>T	uc002aeg.2	+	2	905	c.829C>T	c.(829-831)CCC>TCC	p.P277S	CGNL1_uc010bfw.2_Missense_Mutation_p.P277S	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	277	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGATGTTCTTCCCTTCCGGCG	0.612													8	33					0	0	0.000274275	0	0
SPESP1	246777	broad.mit.edu	37	15	69238016	69238016	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:69238016C>T	uc002arn.1	+	2	271	c.143C>T	c.(142-144)CCC>CTC	p.P48L	NOX5_uc002arp.1_Intron|NOX5_uc002arq.1_Intron|NOX5_uc010bid.1_Intron|NOX5_uc002aro.2_Intron	NM_145658	NP_663633	Q6UW49	SPESP_HUMAN	sperm equatorial segment protein 1 precursor	48					multicellular organismal development	acrosomal vesicle					0						CGAAGTGTTCCCTCTGGGGAG	0.363													28	90					0	0	0.000339439	0	0
NOX5	79400	broad.mit.edu	37	15	69318985	69318985	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:69318985G>A	uc002ars.1	+	2	188	c.168G>A	c.(166-168)GTG>GTA	p.V56V	NOX5_uc002arp.1_Silent_p.V38V|NOX5_uc002arq.1_Silent_p.V38V|NOX5_uc010bid.1_Silent_p.V49V|NOX5_uc002arr.1_Silent_p.V56V|NOX5_uc010bie.1_5'UTR	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	56	Cytoplasmic (Potential).|N-terminal regulatory region; interacts with the C-terminal catalytic region in a calcium-dependent manner.|EF-hand 1.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						CTCTGCATGTGAAAGAGGCAA	0.537													15	54					0	0	0.00074312	0	0
NOX5	79400	broad.mit.edu	37	15	69335023	69335023	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:69335023C>T	uc002ars.1	+	10	1545	c.1525C>T	c.(1525-1527)CGG>TGG	p.R509W	NOX5_uc002arp.1_Missense_Mutation_p.R491W|NOX5_uc002arq.1_Missense_Mutation_p.R463W|NOX5_uc010bid.1_Missense_Mutation_p.R474W|NOX5_uc002arr.1_Missense_Mutation_p.R481W|NOX5_uc010bie.1_Missense_Mutation_p.R309W|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	509	FAD-binding FR-type.|Cytoplasmic (Potential).|C-terminal catalytic region.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GCTGCACATTCGGTCCCAAGG	0.567													7	31					0	0	0.000157383	0	0
KIF23	9493	broad.mit.edu	37	15	69730701	69730701	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:69730701A>C	uc002asb.2	+	15	1787	c.1670A>C	c.(1669-1671)GAA>GCA	p.E557A	KIF23_uc002asc.2_Missense_Mutation_p.E557A|KIF23_uc010bii.2_Missense_Mutation_p.E447A|KIF23_uc010ukc.1_Missense_Mutation_p.E374A	NM_138555	NP_612565	Q02241	KIF23_HUMAN	kinesin family member 23 isoform 1	557	Potential.				blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding				0						CAGAAATTGGAAATAGAACGA	0.323													21	68					0	0	0.00047179	0	0
ZFAND6	54469	broad.mit.edu	37	15	80414107	80414107	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:80414107A>G	uc002bfe.1	+	4	519	c.208A>G	c.(208-210)AGT>GGT	p.S70G	ZFAND6_uc002bff.1_Missense_Mutation_p.S70G|ZFAND6_uc002bfg.1_Missense_Mutation_p.S58G|ZFAND6_uc002bfh.1_Missense_Mutation_p.S70G|ZFAND6_uc002bfi.1_Missense_Mutation_p.S70G	NM_019006	NP_061879	Q6FIF0	ZFAN6_HUMAN	zinc finger, AN1-type domain 6	70	Ser-rich.						DNA binding|zinc ion binding				0						CACAGATGGCAGTGTGCCAGA	0.418													5	35					0	0	0.000602214	0	0
ZFAND6	54469	broad.mit.edu	37	15	80429862	80429862	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:80429862C>T	uc002bfe.1	+	7	830	c.519C>T	c.(517-519)CAC>CAT	p.H173H	ZFAND6_uc002bff.1_Silent_p.H173H|ZFAND6_uc002bfg.1_Silent_p.H161H|ZFAND6_uc002bfh.1_Silent_p.H173H|ZFAND6_uc002bfi.1_Silent_p.H173H	NM_019006	NP_061879	Q6FIF0	ZFAN6_HUMAN	zinc finger, AN1-type domain 6	173	AN1-type.						DNA binding|zinc ion binding				0						GTGGTGTACACCGTTACTCAG	0.383													16	50					0	0	0.000422831	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053142	85053142	+	RNA	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:85053142C>T	uc002bkm.2	-	9		c.1905G>A			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						TTTTTCAATTCCTTGACCCGC	0.393													4	11					0	0	0.000274275	0	0
MCTP2	55784	broad.mit.edu	37	15	94841934	94841934	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr15:94841934G>A	uc002btj.2	+	1	505	c.440G>A	c.(439-441)GGA>GAA	p.G147E	MCTP2_uc010urg.1_Missense_Mutation_p.G147E|MCTP2_uc002bti.2_Missense_Mutation_p.G147E|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Missense_Mutation_p.G147E|MCTP2_uc002btg.3_Missense_Mutation_p.G147E|MCTP2_uc002bth.3_Missense_Mutation_p.G147E	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	147					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			ACTTCCCTTGGAGGGGATGCA	0.398													18	65					0	0	0.000958276	0	0
LMF1	64788	broad.mit.edu	37	16	920852	920852	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:920852G>A	uc002ckj.2	-	8	1113	c.1109C>T	c.(1108-1110)TCG>TTG	p.S370L	LMF1_uc010brg.2_5'Flank|LMF1_uc010brh.2_Missense_Mutation_p.S153L|LMF1_uc010bri.2_Missense_Mutation_p.S133L|LMF1_uc002ckk.2_Missense_Mutation_p.S153L	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	370	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				GACGCCCAGCGAGACGTTGGC	0.657													6	14					0	0	0.00116845	0	0
BAIAP3	8938	broad.mit.edu	37	16	1396267	1396267	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:1396267G>A	uc002clk.1	+	25	2503	c.2503G>A	c.(2503-2505)GGG>AGG	p.G835R	BAIAP3_uc002clj.2_Missense_Mutation_p.G817R|BAIAP3_uc010uuz.1_Missense_Mutation_p.G800R|BAIAP3_uc010uva.1_Missense_Mutation_p.G772R|BAIAP3_uc010uvc.1_Missense_Mutation_p.G764R	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	835					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				GGGGCCCGAGGGGGTGCTCCC	0.682													13	24					0	0	0.00136819	0	0
CCNF	899	broad.mit.edu	37	16	2488085	2488085	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:2488085C>T	uc002cqd.1	+	6	643	c.555C>T	c.(553-555)TCC>TCT	p.S185S	CCNF_uc002cqe.1_5'UTR	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	185					cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				ACAAAGCATCCATATTGCACT	0.498													15	50					0	0	0.00074312	0	0
UBN1	29855	broad.mit.edu	37	16	4909162	4909162	+	Splice_Site	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:4909162T>C	uc002cyb.2	+	5	906	c.567_splice	c.e5+2	p.K189_splice	UBN1_uc010uxw.1_Splice_Site_p.K189_splice|UBN1_uc002cyc.2_Splice_Site_p.K189_splice	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1						chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						TCTCCAAAGGTTAGAATGTGC	0.423													21	40					0	0	0.00121646	0	0
CIITA	4261	broad.mit.edu	37	16	10997685	10997685	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:10997685C>T	uc002dai.3	+	9	1003	c.870C>T	c.(868-870)TTC>TTT	p.F290F	CIITA_uc002daj.3_Silent_p.F291F|CIITA_uc002dak.3_Silent_p.F241F|CIITA_uc002dag.2_Silent_p.F290F|CIITA_uc002dah.2_Silent_p.F242F|CIITA_uc010bup.1_Silent_p.F290F	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	290					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CCAGCCCCTTCGCTCCATCAG	0.622			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								20	59					0	0	0.00121646	0	0
RSL1D1	26156	broad.mit.edu	37	16	11931674	11931674	+	Silent	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:11931674G>T	uc002dbp.1	-	9	1516	c.1443C>A	c.(1441-1443)CCC>CCA	p.P481P	RSL1D1_uc010buv.1_Silent_p.P480P|RSL1D1_uc010uyw.1_Silent_p.P261P	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	481					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						TGGGTTTTTTGGGCCATTTTT	0.388													8	159					0.000157383	0.00114602	0.000157383	1	0
GSPT1	2935	broad.mit.edu	37	16	11970009	11970009	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:11970009G>A	uc002dbr.2	-	11	1239	c.1212C>T	c.(1210-1212)TCC>TCT	p.S404S	GSPT1_uc002dbu.2_Silent_p.S541S|GSPT1_uc002dbt.2_Silent_p.S542S|GSPT1_uc010bux.2_Silent_p.S404S	NM_001130007	NP_001123479	P15170	ERF3A_HUMAN	G1 to S phase transition 1 isoform 3	404					G1/S transition of mitotic cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|protein methylation	intracellular	GTP binding|GTPase activity|protein binding|translation release factor activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GGCAGATGATGGATTTGTGCT	0.353													51	145					0	0	0.000781405	0	0
ABCC6	368	broad.mit.edu	37	16	16271311	16271311	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:16271311C>T	uc002den.3	-	19	2625	c.2588G>A	c.(2587-2589)GGA>GAA	p.G863E	ABCC6_uc010bvo.2_Intron	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	863	Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CCTAGTACCTCCTTCTCCTCT	0.582													14	68					0	0	0.000308642	0	0
SMG1	23049	broad.mit.edu	37	16	18887699	18887699	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:18887699T>C	uc002dfm.2	-	13	2000	c.1637A>G	c.(1636-1638)CAT>CGT	p.H546R	SMG1_uc010bwb.2_Missense_Mutation_p.H406R	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	546	Interaction with SMG8 and SMG9.		H -> R.		DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						ATAAACAGCATGGGCTACAGC	0.333													4	26					0	0	0.00024832	0	0
DNAH3	55567	broad.mit.edu	37	16	21011627	21011627	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:21011627C>T	uc010vbe.1	-	43	6340	c.6340G>A	c.(6340-6342)GAT>AAT	p.D2114N		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2114	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATGATGATATCCTGGGTCTGA	0.512													15	49					0	0	0.000308642	0	0
DNAH3	55567	broad.mit.edu	37	16	21078638	21078638	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:21078638C>T	uc010vbe.1	-	24	3484	c.3484G>A	c.(3484-3486)GAT>AAT	p.D1162N		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1162	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCCAAGTAATCATTCAGCCCT	0.433													14	46					0	0	0.000219431	0	0
OTOA	146183	broad.mit.edu	37	16	21698898	21698898	+	Silent	SNP	A	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:21698898A>T	uc002djh.2	+	7	565	c.564A>T	c.(562-564)TCA>TCT	p.S188S	uc002diq.3_Intron|OTOA_uc010vbj.1_Silent_p.S109S	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	188					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GGGGGTCCTCAGGGAGCTTTC	0.552													14	39					0	0	0.000308642	0	0
SCNN1G	6340	broad.mit.edu	37	16	23226678	23226678	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:23226678C>T	uc002dlm.1	+	13	1977	c.1838C>T	c.(1837-1839)CCA>CTA	p.P613L		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	613	Cytoplasmic (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	CACCTGCCTCCAGCCCTAGGA	0.577													11	48					0	0	0.000978159	0	0
GGA2	23062	broad.mit.edu	37	16	23504758	23504759	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:23504758_23504759GG>AT	uc002dlq.2	-	4	349_350	c.273_274CC>AT	c.(271-276)AACCAC>AAATAC	p.91_92NH>KY	GGA2_uc010bxo.1_RNA	NM_015044	NP_055859	Q9UJY4	GGA2_HUMAN	ADP-ribosylation factor binding protein 2	91_92	VHS.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|clathrin-coated vesicle|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.0386)		TCCCCACAGTGGTTCATGCACA	0.559													9	27					0	0	6.4e-05	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25268074	25268074	+	Silent	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:25268074T>C	uc002dod.3	-	1	782	c.375A>G	c.(373-375)AAA>AAG	p.K125K	ZKSCAN2_uc010vcl.1_5'UTR|ZKSCAN2_uc002doe.2_Silent_p.K125K	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	125	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		TTCCAGTCTCTTTCTCCAAAT	0.473													24	69					0	0	0.00106085	0	0
ITGAM	3684	broad.mit.edu	37	16	31284749	31284749	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:31284749C>T	uc002ebq.2	+	8	866	c.768C>T	c.(766-768)ATC>ATT	p.I256I	ITGAM_uc002ebr.2_Silent_p.I256I|ITGAM_uc010cam.1_5'Flank	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	256	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						TAGTTGTCATCACGGATGGAG	0.493													11	72					0	0	0.000978159	0	0
GPT2	84706	broad.mit.edu	37	16	46943703	46943703	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:46943703C>T	uc002eel.2	+	6	778	c.684C>T	c.(682-684)GCC>GCT	p.A228A	GPT2_uc002eem.2_Silent_p.A128A	NM_133443	NP_597700	Q8TD30	ALAT2_HUMAN	glutamic pyruvate transaminase 2 isoform 1	228					2-oxoglutarate metabolic process|cellular amino acid biosynthetic process|L-alanine metabolic process	mitochondrial matrix	L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2		all_cancers(37;0.0276)|all_epithelial(9;0.0498)|all_lung(18;0.0522)			L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	AGCTCGACGCCATCCAGGTGA	0.572													22	55					0	0	0.000375601	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53653041	53653041	+	Missense_Mutation	SNP	C	A	A	rs141808948	by1000genomes	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:53653041C>A	uc002ehp.2	-	24	3576	c.3512G>T	c.(3511-3513)CGG>CTG	p.R1171L	RPGRIP1L_uc002eho.3_Missense_Mutation_p.R1091L|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.R1125L|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.R1137L|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.R1125L	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	1171					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				AACAAACAGCCGTTGGATAGT	0.423													8	354					0.000442599	0.00320505	0.000442599	1	0
GPR56	9289	broad.mit.edu	37	16	57689336	57689336	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:57689336A>G	uc002emb.2	+	7	1086	c.794A>G	c.(793-795)TAC>TGC	p.Y265C	GPR56_uc002elz.1_Missense_Mutation_p.Y95C|GPR56_uc002ema.1_Missense_Mutation_p.Y90C|GPR56_uc002emc.2_Missense_Mutation_p.Y265C|GPR56_uc002emf.2_Missense_Mutation_p.Y265C|GPR56_uc010vhs.1_Missense_Mutation_p.Y265C|GPR56_uc002emd.2_Missense_Mutation_p.Y265C|GPR56_uc002eme.2_Missense_Mutation_p.Y265C|GPR56_uc010vht.1_Missense_Mutation_p.Y270C|GPR56_uc002emg.3_Missense_Mutation_p.Y265C|GPR56_uc010vhu.1_Missense_Mutation_p.Y90C	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	265	Extracellular (Potential).				brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						ATCATGGAGTACTCGGTGCTG	0.612													17	46					0	0	0.000958276	0	0
CDH16	1014	broad.mit.edu	37	16	66947440	66947440	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:66947440C>T	uc002eql.2	-	8	930	c.857G>A	c.(856-858)GGA>GAA	p.G286E	CDH16_uc010cdy.2_Missense_Mutation_p.G286E|CDH16_uc002eqm.2_Missense_Mutation_p.G189E	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	286	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GTAGAGGTTTCCCTCTGCATT	0.612													14	72					0	0	0.000219431	0	0
KCTD19	146212	broad.mit.edu	37	16	67327569	67327570	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:67327569_67327570GG>AA	uc002esu.2	-	12	2146_2147	c.2095_2096CC>TT	c.(2095-2097)CCA>TTA	p.P699L	KCTD19_uc002est.2_Missense_Mutation_p.P471L|KCTD19_uc010vjj.1_Missense_Mutation_p.P442L	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	699						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		CCCTGCCTGTGGTCCTGGATCC	0.619													11	68					0	0	6.4e-05	0	0
PDPR	55066	broad.mit.edu	37	16	70166093	70166093	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:70166093G>A	uc002eyf.1	+	9	1844	c.887G>A	c.(886-888)TGG>TAG	p.W296*	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Nonsense_Mutation_p.W196*|PDPR_uc002eyg.1_Nonsense_Mutation_p.W24*	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	296					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		ATTCGGAACTGGCAGGGTGGC	0.478													6	38					0	0	0.00116845	0	0
HYDIN	54768	broad.mit.edu	37	16	70843832	70843833	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:70843832_70843833CC>AA	uc002ezr.2	-	85	14861_14862	c.14733_14734GG>TT	c.(14731-14736)TTGGGT>TTTTGT	p.4911_4912LG>FC	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4912_4913										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGGTAGTAACCCAAGTCAGTGT	0.48													10	380					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	16	74425637	74425637	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:74425637C>T	uc010vmt.1	+	6	809	c.808C>T	c.(808-810)CCT>TCT	p.P270S						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		TCCACCCTCTCCTCTTCCACC	0.368													5	87					0	0	0.00116845	0	0
GLG1	2734	broad.mit.edu	37	16	74508513	74508513	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:74508513C>T	uc002fcy.3	-	13	2033	c.1983G>A	c.(1981-1983)CAG>CAA	p.Q661Q	GLG1_uc002fcx.2_Silent_p.Q661Q|GLG1_uc002fcw.3_Silent_p.Q650Q|GLG1_uc002fcz.3_Silent_p.Q78Q	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	661	Cys-rich GLG1 9.|Extracellular (Potential).					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						CCAGATGGTCCTGAAGGCACT	0.463													29	149					0	0	0.000409698	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76532481	76532481	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:76532481T>C	uc002feu.1	+	17	2640	c.2255T>C	c.(2254-2256)TTG>TCG	p.L752S	CNTNAP4_uc002fev.1_Missense_Mutation_p.L616S|CNTNAP4_uc010chb.1_Missense_Mutation_p.L679S|CNTNAP4_uc002fex.1_Missense_Mutation_p.L755S	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	752	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GACACTGGATTGCTTGCTTAT	0.383													11	48					0	0	0.000219431	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77389870	77389870	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:77389870G>A	uc002ffc.3	-	9	1846	c.1427C>T	c.(1426-1428)TCC>TTC	p.S476F	ADAMTS18_uc010chc.1_Missense_Mutation_p.S64F|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S172F|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	476	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GCGGCTGCAGGAAGACCATGA	0.483													10	66					0	0	0.000442599	0	0
VAT1L	57687	broad.mit.edu	37	16	78005767	78005767	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:78005767G>A	uc002ffg.1	+	8	1195	c.1098G>A	c.(1096-1098)CGG>CGA	p.R366R		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	366							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						CCATGCAGCGGATTCACGACC	0.517											OREG0023950	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	64	206					0	0	0.000781405	0	0
PKD1L2	114780	broad.mit.edu	37	16	81211505	81211505	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:81211505G>A	uc002fgh.1	-	14	2344	c.2344C>T	c.(2344-2346)CCA>TCA	p.P782S	PKD1L2_uc002fgg.1_RNA|PKD1L2_uc002fgi.2_Missense_Mutation_p.P97S|PKD1L2_uc002fgj.2_Missense_Mutation_p.P782S|PKD1L2_uc002fgk.1_5'UTR|PKD1L2_uc002fgl.1_Intron	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	782	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCCTCCTCTGGGGCAATAGTG	0.592													8	52					0	0	0.000157383	0	0
PKD1L2	114780	broad.mit.edu	37	16	81253869	81253869	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:81253869C>T	uc002fgh.1	-	1	107	c.107G>A	c.(106-108)AGA>AAA	p.R36K	PKD1L2_uc002fgj.2_Missense_Mutation_p.R36K	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	36	Extracellular (Potential).|C-type lectin.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCAAGCATCTCTGAAGGCCAC	0.562													21	56					0	0	0.00152264	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033492	82033492	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:82033492C>T	uc002fgu.2	-	3	534	c.406G>A	c.(406-408)GGG>AGG	p.G136R		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	136					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GATTCATCCCCATTTCTGATA	0.498													14	60					0	0	0.000308642	0	0
MBTPS1	8720	broad.mit.edu	37	16	84092977	84092977	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:84092977G>C	uc002fhi.2	-	21	3263	c.2761C>G	c.(2761-2763)CCT>GCT	p.P921A	MBTPS1_uc002fhh.2_Missense_Mutation_p.P425A	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	921	Lumenal (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						AGAGGCCGAGGTTTTGGGTCT	0.527													4	47					0	0	0.00024832	0	0
ATP2C2	9914	broad.mit.edu	37	16	84456106	84456106	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:84456106C>T	uc002fhx.2	+	8	824	c.735C>T	c.(733-735)ATC>ATT	p.I245I	ATP2C2_uc010chj.2_Silent_p.I245I|ATP2C2_uc002fhy.2_Silent_p.I262I|ATP2C2_uc002fhz.2_Silent_p.I94I	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	245	Helical; Name=3; (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						TCAGCAACATCGTCTTCATGG	0.602													6	54					0	0	0.00116845	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87453455	87453455	+	Silent	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:87453455A>G	uc002fjz.1	-	6	595	c.568T>C	c.(568-570)TTG>CTG	p.L190L	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_5'UTR	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	190					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		TCATTTTTCAACACGTGAGAA	0.383													10	64					0	0	0.000442599	0	0
ZNF778	197320	broad.mit.edu	37	16	89294742	89294742	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:89294742C>T	uc002fmv.2	+	6	2301	c.1962C>T	c.(1960-1962)TTC>TTT	p.F654F	ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Silent_p.F612F|ZNF778_uc010vpg.1_Silent_p.F417F	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	654	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		GGAAAGCCTTCCGTGCCTCCT	0.448													5	14					0	0	0.000602214	0	0
ANKRD11	29123	broad.mit.edu	37	16	89350500	89350500	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:89350500T>G	uc002fmx.1	-	9	2911	c.2450A>C	c.(2449-2451)TAT>TCT	p.Y817S	ANKRD11_uc002fmy.1_Missense_Mutation_p.Y817S|ANKRD11_uc002fnc.1_Missense_Mutation_p.Y817S|ANKRD11_uc002fnb.1_Missense_Mutation_p.Y774S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	817	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TTTGTTACAATATTCGTCAAA	0.343													4	30					0	0	0.00024832	0	0
CPNE7	27132	broad.mit.edu	37	16	89662951	89662951	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr16:89662951G>A	uc002fnp.2	+	17	1954	c.1824G>A	c.(1822-1824)GAG>GAA	p.E608E	CPNE7_uc002fnq.2_Silent_p.E533E	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	608					lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		AGGTGGTGGAGTACTACAGCC	0.667													17	38					0	0	0.00074312	0	0
SERPINF2	5345	broad.mit.edu	37	17	1649093	1649093	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:1649093T>C	uc002ftk.1	+	5	334	c.257T>C	c.(256-258)ATG>ACG	p.M86T	SERPINF2_uc010vqr.1_Intron	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor	86					acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	GCCCGGGCCATGATGGCCTTC	0.657													15	39					0	0	0.000422831	0	0
SPATA22	84690	broad.mit.edu	37	17	3343529	3343529	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:3343529G>A	uc002fvm.2	-	9	1241	c.1004C>T	c.(1003-1005)TCT>TTT	p.S335F	SPATA22_uc010vrg.1_Missense_Mutation_p.S319F|SPATA22_uc010vrf.1_3'UTR|SPATA22_uc002fvn.2_Missense_Mutation_p.S335F|SPATA22_uc002fvo.2_Missense_Mutation_p.S335F|SPATA22_uc002fvp.2_Missense_Mutation_p.S335F|SPATA22_uc010ckf.2_Missense_Mutation_p.S292F	NM_032598	NP_115987	Q8NHS9	SPT22_HUMAN	spermatogenesis associated 22	335											0						TTCAGAAACAGACGCCGGTCT	0.373													18	53					0	0	0.00121646	0	0
CAMKK1	84254	broad.mit.edu	37	17	3788911	3788911	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:3788911T>A	uc002fwt.2	-	2	165	c.71A>T	c.(70-72)GAT>GTT	p.D24V	CAMKK1_uc002fwu.2_Missense_Mutation_p.D24V|CAMKK1_uc002fwv.2_Missense_Mutation_p.D24V	NM_172206	NP_757343	Q8N5S9	KKCC1_HUMAN	calcium/calmodulin-dependent protein kinase 1	24					synaptic transmission	cytosol|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1				LUAD - Lung adenocarcinoma(2;2.11e-05)|Lung(3;0.0176)		GTGAGTCACATCGATGGCTGC	0.617													6	40					0	0	8.12818e-05	0	0
MYH1	4619	broad.mit.edu	37	17	10408543	10408543	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:10408543C>T	uc002gmo.2	-	21	2466	c.2372G>A	c.(2371-2373)CGA>CAA	p.R791Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	791	IQ.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GGCCTGGGTTCGGGTAATCAG	0.458													20	48					0	0	0.00152264	0	0
MYH1	4619	broad.mit.edu	37	17	10411857	10411857	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:10411857C>T	uc002gmo.2	-	16	1814	c.1720G>A	c.(1720-1722)GGC>AGC	p.G574S	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	574	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCAGGCTTGCCTTTGGCAGGC	0.507													17	48					0	0	0.000566183	0	0
MYH2	4620	broad.mit.edu	37	17	10435026	10435026	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:10435026G>A	uc010coi.2	-	22	2749	c.2621C>T	c.(2620-2622)GCA>GTA	p.A874V	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.A874V|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	874	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTTCCTTTTTGCCTCTGACTT	0.428													29	50					0	0	0.000409698	0	0
DNAH9	1770	broad.mit.edu	37	17	11687793	11687793	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:11687793C>T	uc002gne.2	+	41	8066	c.7998C>T	c.(7996-7998)TTC>TTT	p.F2666F	DNAH9_uc010coo.2_Silent_p.F1960F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2666	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CTACCACCTTCCTACCCACAG	0.522													32	90					0	0	0.00058488	0	0
MYOCD	93649	broad.mit.edu	37	17	12666442	12666442	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:12666442G>C	uc002gnn.2	+	13	2597	c.2298G>C	c.(2296-2298)AAG>AAC	p.K766N	MYOCD_uc002gno.2_Missense_Mutation_p.K814N|MYOCD_uc002gnq.2_Missense_Mutation_p.K490N	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	766					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AAGTCCCAAAGATACCCAGAT	0.483													13	94					0	0	0.00136819	0	0
TEKT3	64518	broad.mit.edu	37	17	15234598	15234598	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:15234598G>A	uc002gon.2	-	3	492	c.305C>T	c.(304-306)TCC>TTC	p.S102F		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	102					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		GGTTAAATTGGACCTGTACCA	0.433													26	93					0	0	0.00127121	0	0
DRG2	1819	broad.mit.edu	37	17	18004832	18004832	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:18004832C>T	uc002gsh.1	+	8	712	c.657C>T	c.(655-657)TTC>TTT	p.F219F	DRG2_uc002gsi.1_RNA|DRG2_uc002gsj.1_Silent_p.F219F	NM_001388	NP_001379	P55039	DRG2_HUMAN	developmentally regulated GTP binding protein 2	219					signal transduction		GTP binding			ovary(1)	1	all_neural(463;0.228)					AAGTGCTTTTCCGAGAAGACT	0.597													9	62					0	0	0.000274275	0	0
MYO15A	51168	broad.mit.edu	37	17	18023624	18023624	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:18023624C>T	uc010vxh.1	+	2	1848	c.1510C>T	c.(1510-1512)CCT>TCT	p.P504S		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	504	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TCTGGACATTCCTCTCCCCTT	0.647													12	26					0	0	0.000151284	0	0
ERAL1	26284	broad.mit.edu	37	17	27185489	27185489	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:27185489C>T	uc002hcy.1	+	6	706	c.696C>T	c.(694-696)GTC>GTT	p.V232V	ERAL1_uc002hcz.1_RNA|ERAL1_uc002hda.1_Silent_p.V39V|ERAL1_uc002hdb.1_Silent_p.V115V	NM_005702	NP_005693	O75616	ERAL1_HUMAN	Era-like 1	232	G.				ribosomal small subunit assembly	mitochondrial inner membrane|mitochondrial matrix	GTP binding|ribosomal small subunit binding|rRNA binding			skin(1)	1	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.12e-05)|all cancers(11;5.32e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.105)			TCCCTAGTGTCCTGGTCATGA	0.547													10	53					0	0	0.000442599	0	0
UNC45B	146862	broad.mit.edu	37	17	33513459	33513459	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:33513459G>A	uc002hja.2	+	20	2774	c.2677G>A	c.(2677-2679)GAG>AAG	p.E893K	UNC45B_uc002hjb.2_Missense_Mutation_p.E891K|UNC45B_uc002hjc.2_Missense_Mutation_p.E891K|UNC45B_uc010cto.2_Missense_Mutation_p.E812K	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	893					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				TGAGCTGCTGGAGATCCTGAC	0.552													14	35					0	0	0.000219431	0	0
HNF1B	6928	broad.mit.edu	37	17	36093634	36093634	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:36093634G>A	uc002hok.3	-	3	946	c.725C>T	c.(724-726)TCC>TTC	p.S242F	HNF1B_uc010wdi.1_Missense_Mutation_p.S216F|HNF1B_uc010cve.1_Missense_Mutation_p.S50F	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	242	Homeobox; HNF1-type.				endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			GATTTGCTGGGACGCGGGCCC	0.567									Hereditary_Prostate_Cancer				51	284					0	0	0.000781405	0	0
GPR179	440435	broad.mit.edu	37	17	36484409	36484409	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:36484409C>T	uc002hpz.2	-	11	5064	c.5043G>A	c.(5041-5043)GTG>GTA	p.V1681V		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1681	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTTTGCTTCCCACACTGCCTG	0.587													35	78					0	0	0.00111076	0	0
KRT25	147183	broad.mit.edu	37	17	38904547	38904547	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:38904547C>T	uc002hve.2	-	8	1396	c.1335G>A	c.(1333-1335)GAG>GAA	p.E445E		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	445	Tail.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TTTGAGATTTCTCTTCCAGGG	0.443													16	120					0	0	0.000308642	0	0
KRT17	3872	broad.mit.edu	37	17	39775938	39775938	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:39775938C>T	uc002hxh.2	-	8	1328	c.1207G>A	c.(1207-1209)GTG>ATG	p.V403M	JUP_uc010wfs.1_Intron	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	403	Tail.			LTQYKKEPVT -> FRMSESSPVS (in Ref. 4; AC022596).	epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				CGGGTGGTCACCGCTGCAGGA	0.627									Steatocystoma_Multiplex				7	52					0	0	8.12818e-05	0	0
SC65	10609	broad.mit.edu	37	17	39964117	39964117	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:39964117G>A	uc002hxt.2	-	5	1340	c.1056C>T	c.(1054-1056)CCC>CCT	p.P352P	SC65_uc002hxu.2_Silent_p.P443P	NM_006455	NP_006446	Q92791	SC65_HUMAN	synaptonemal complex protein SC65	352	Asp/Glu-rich (acidic).				synaptonemal complex assembly	nucleolus|synaptonemal complex	binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.149)		CCACCTCCCGGGGCTGGAAGT	0.483													6	25					0	0	0.00116845	0	0
AOC3	8639	broad.mit.edu	37	17	41003657	41003657	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:41003657G>A	uc002ibv.2	+	1	457	c.297G>A	c.(295-297)GTG>GTA	p.V99V		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	99	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	TCTTCTCAGTGGAGTTGCAGC	0.672													7	59					0	0	0.000157383	0	0
SLC4A1	6521	broad.mit.edu	37	17	42328615	42328615	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:42328615G>A	uc002igf.3	-	19	2716	c.2567C>T	c.(2566-2568)TCC>TTC	p.S856F		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	856	Helical; (Potential).|Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CAGGGCCAGGGAGGCCGGCGT	0.637													5	18					0	0	0.00116845	0	0
HEXIM2	124790	broad.mit.edu	37	17	43246746	43246746	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:43246746C>T	uc002iih.1	+	4	670	c.431C>T	c.(430-432)ACC>ATC	p.T144I	HEXIM2_uc010daf.1_Missense_Mutation_p.T166I|HEXIM2_uc002iii.1_Missense_Mutation_p.T144I|HEXIM2_uc002iij.1_Missense_Mutation_p.T144I|uc002iik.1_RNA	NM_144608	NP_653209	Q96MH2	HEXI2_HUMAN	hexamthylene bis-acetamide inducible 2	144					negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding				0						TACAACACCACCCAGTTCCTG	0.637													5	25					0	0	0.00116845	0	0
SKAP1	8631	broad.mit.edu	37	17	46239846	46239846	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:46239846G>A	uc002ini.1	-	11	1075	c.963C>T	c.(961-963)ATC>ATT	p.I321I	SKAP1_uc002inj.1_Silent_p.I320I|SKAP1_uc010dbd.1_Silent_p.I226I|SKAP1_uc010dbe.1_Silent_p.I321I	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	321	SH3.				positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						TCAGAATACGGATGAGGTCAC	0.438													10	36					0	0	0.000978159	0	0
CALCOCO2	10241	broad.mit.edu	37	17	46926728	46926728	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:46926728C>T	uc002iof.2	+	5	611	c.532C>T	c.(532-534)CAA>TAA	p.Q178*	CALCOCO2_uc010wlp.1_Nonsense_Mutation_p.Q199*|CALCOCO2_uc010wlq.1_Nonsense_Mutation_p.Q106*|CALCOCO2_uc010wlr.1_Nonsense_Mutation_p.Q202*|CALCOCO2_uc010wls.1_Intron	NM_005831	NP_005822	Q13137	CACO2_HUMAN	calcium binding and coiled-coil domain 2	178	Potential.				response to interferon-gamma|viral reproduction	cytoskeleton|Golgi apparatus|nucleus|perinuclear region of cytoplasm|soluble fraction	protein homodimerization activity			ovary(1)	1						GGCTGAGCTCCAAAAGAAGCA	0.488													15	90					0	0	0.000958276	0	0
COIL	8161	broad.mit.edu	37	17	55027324	55027324	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:55027324C>A	uc002iuu.2	-	2	1310	c.1279G>T	c.(1279-1281)GTA>TTA	p.V427L		NM_004645	NP_004636	P38432	COIL_HUMAN	coilin	427	2 X 4 AA repeats of S-L-P-A.					Cajal body|nucleolus	protein C-terminus binding			ovary(1)	1	Breast(9;6.15e-08)					CTTCTATTTACAACACAGGAA	0.438													18	64					2.4624e-09	1.81324e-08	0.00121646	1	0
COIL	8161	broad.mit.edu	37	17	55027336	55027336	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:55027336C>T	uc002iuu.2	-	2	1298	c.1267G>A	c.(1267-1269)GTT>ATT	p.V423I		NM_004645	NP_004636	P38432	COIL_HUMAN	coilin	423	2 X 4 AA repeats of S-L-P-A.					Cajal body|nucleolus	protein C-terminus binding			ovary(1)	1	Breast(9;6.15e-08)					ACACAGGAAACAGGATGCCCT	0.443													16	55					0	0	0.000958276	0	0
SUPT4H1	6827	broad.mit.edu	37	17	56423632	56423632	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:56423632G>A	uc002iwe.1	-	5	396	c.329C>T	c.(328-330)TCC>TTC	p.S110F	uc010dct.1_Intron|uc010dcu.1_Intron|uc002ivz.2_Intron|uc010dcv.1_Intron|uc002iwa.2_Intron|uc002iwb.2_Intron|uc002iwc.2_Intron|SUPT4H1_uc002iwd.1_RNA	NM_003168	NP_003159	P63272	SPT4H_HUMAN	suppressor of Ty 4 homolog 1	110				QGIVRELKSRGVAYKSRDTAIKT -> HAKDSRSNVNKYEP RESSEGHDTCLASLFHSLRHSNSLFAL (in Ref. 3; BAC85230).	chromatin remodeling|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGTGTCTCTGGATTTGTAGGC	0.468													7	63					0	0	0.000274275	0	0
TMEM49	81671	broad.mit.edu	37	17	57917128	57917129	+	Splice_Site	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:57917128_57917129GG>TT	uc002ixu.3	+	12	1351	c.1078_splice	c.e12-1	p.G360_splice	TMEM49_uc010wog.1_Splice_Site_p.G168_splice|TMEM49_uc010woh.1_Splice_Site_p.G304_splice|TMEM49_uc010woi.1_Splice_Site_p.G263_splice|TMEM49_uc010woj.1_Splice_Site_p.G226_splice|TMEM49_uc002ixv.2_RNA|MIR21_hsa-mir-21|MI0000077_5'Flank	NM_030938	NP_112200	Q96GC9	VMP1_HUMAN	transmembrane protein 49						autophagy|cell adhesion	endoplasmic reticulum|ER-Golgi intermediate compartment membrane|integral to membrane|plasma membrane|vacuolar membrane					0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;1.15e-09)|all cancers(12;1.15e-08)			TATTTCTACAGGGAGAAAACTG	0.361													11	212					0	0	6.4e-05	0	0
TBX4	9496	broad.mit.edu	37	17	59557581	59557581	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:59557581G>A	uc002izi.2	+	7	967	c.922G>A	c.(922-924)GGG>AGG	p.G308R	TBX4_uc010ddo.2_Missense_Mutation_p.G308R|TBX4_uc010woy.1_Missense_Mutation_p.G308R	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	308					leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						GCACGAGAACGGGGCACACTC	0.647													18	43					0	0	0.000295444	0	0
MED13	9969	broad.mit.edu	37	17	60030357	60030357	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:60030357G>A	uc002izo.2	-	27	6163	c.6086C>T	c.(6085-6087)TCT>TTT	p.S2029F		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	2029					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						GGGGTAATGAGATCCTGGAGA	0.343													16	91					0	0	0.000422831	0	0
ACE	1636	broad.mit.edu	37	17	61564022	61564022	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:61564022A>G	uc002jau.1	+	14	2185	c.2163A>G	c.(2161-2163)ATA>ATG	p.I721M	ACE_uc002jav.1_Missense_Mutation_p.I147M|ACE_uc010ddv.1_Translation_Start_Site|ACE_uc010wpj.1_Missense_Mutation_p.I147M|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.I31M	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	721	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	AGCGGATCATAAAGAAGGTTC	0.552													15	23					0	0	0.000422831	0	0
DDX42	11325	broad.mit.edu	37	17	61886300	61886300	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:61886300T>A	uc002jbu.2	+	11	1401	c.1144T>A	c.(1144-1146)TGT>AGT	p.C382S	DDX42_uc002jbv.2_Missense_Mutation_p.C382S|DDX42_uc002jbw.1_Missense_Mutation_p.C118S|DDX42_uc002jbx.2_Missense_Mutation_p.C118S|DDX42_uc002jby.2_5'Flank	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	382	Helicase ATP-binding.				protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						GATTGTTGTGTGTACCCCAGT	0.473													28	58					0	0	0.001512	0	0
ERN1	2081	broad.mit.edu	37	17	62135310	62135310	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr17:62135310G>A	uc002jdz.2	-	12	1363	c.1250C>T	c.(1249-1251)ACC>ATC	p.T417I		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	417	Lumenal (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						CCGAGACACGGTGGTAGGTGC	0.562													4	9					0	0	0.000602214	0	0
COLEC12	81035	broad.mit.edu	37	18	346919	346919	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:346919G>A	uc002kkm.2	-	5	918	c.703C>T	c.(703-705)CAG>TAG	p.Q235*		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	235	Potential.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				TTGATTCGCTGGATAGCCTGG	0.507													33	78					0	0	0.000692331	0	0
SMCHD1	23347	broad.mit.edu	37	18	2775864	2775864	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:2775864C>T	uc002klm.3	+	42	5497	c.5308C>T	c.(5308-5310)CGT>TGT	p.R1770C	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1770					chromosome organization		ATP binding				0						AACCCAAGGTCGTCAGCAGGT	0.408													9	38					0	0	0.000442599	0	0
TUBB6	84617	broad.mit.edu	37	18	12325656	12325656	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:12325656A>G	uc002kqw.2	+	4	913	c.868A>G	c.(868-870)ACC>GCC	p.T290A	TUBB6_uc002kqv.2_Missense_Mutation_p.T218A|TUBB6_uc010dld.2_RNA|TUBB6_uc002kqx.2_Missense_Mutation_p.T253A|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	290					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		GCCCGAGCTCACCCAGCAGAT	0.687													18	44					0	0	0.000566183	0	0
DSC3	1825	broad.mit.edu	37	18	28598176	28598176	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:28598176C>T	uc002kwj.3	-	9	1279	c.1124G>A	c.(1123-1125)CGA>CAA	p.R375Q	DSC3_uc002kwi.3_Missense_Mutation_p.R375Q	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	375	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			TATAGGTATTCGTAAGATTTC	0.289													12	52					0	0	0.000151284	0	0
DSC3	1825	broad.mit.edu	37	18	28609493	28609493	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:28609493G>A	uc002kwj.3	-	4	611	c.456C>T	c.(454-456)TTC>TTT	p.F152F	DSC3_uc002kwi.3_Silent_p.F152F	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	152	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			GAAACAATGGGAAAGGGCCCA	0.408													10	43					0	0	0.000978159	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093586	30093586	+	RNA	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:30093586C>T	uc010dmc.2	+	1		c.1961C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						GAGAGTACGTCGGGAGAATAA	0.493													12	89					0	0	0.000151284	0	0
ASXL3	80816	broad.mit.edu	37	18	31320396	31320396	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:31320396C>T	uc010dmg.1	+	11	3083	c.3028C>T	c.(3028-3030)CCC>TCC	p.P1010S	ASXL3_uc002kxq.2_Missense_Mutation_p.P717S	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1010					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ACCAAGGGTTCCCCCTCTCAA	0.413													4	11					0	0	0.00024832	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560940	44560940	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:44560940C>T	uc002lcr.1	-	1	1049	c.696G>A	c.(694-696)CAG>CAA	p.Q232Q	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	232					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GGCGTTTTTCCTGGCGAGACG	0.612													4	32					0	0	0.00024832	0	0
ALPK2	115701	broad.mit.edu	37	18	56202686	56202686	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:56202686C>G	uc002lhj.3	-	5	4947	c.4733G>C	c.(4732-4734)CGT>CCT	p.R1578P	ALPK2_uc002lhk.1_Missense_Mutation_p.R909P	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1578							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CACATACTGACGCTTTCTGGG	0.468													11	94					0	0	0.000151284	0	0
CCBE1	147372	broad.mit.edu	37	18	57147471	57147471	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:57147471C>T	uc002lib.2	-	3	283	c.213_splice	c.e3-1	p.R71_splice		NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1						lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				GCACTTTTTCCTAAGAGACAA	0.284													17	32					0	0	0.000958276	0	0
SERPINB7	8710	broad.mit.edu	37	18	61468108	61468108	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:61468108G>A	uc002ljl.2	+	7	702	c.606G>A	c.(604-606)GGG>GGA	p.G202G	SERPINB7_uc002ljm.2_Silent_p.G202G|SERPINB7_uc010xet.1_Silent_p.G185G|SERPINB7_uc010dqg.2_Silent_p.G202G	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	202					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				AGTGCTCTGGGAAGGCAGTCG	0.363													10	54					0	0	0.000673444	0	0
SERPINB10	5273	broad.mit.edu	37	18	61600313	61600313	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:61600313T>G	uc010xev.1	+	7	755	c.665T>G	c.(664-666)ATG>AGG	p.M222R	SERPINB10_uc010xew.1_Missense_Mutation_p.M222R	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	222						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				ATGATGTTTATGAAGAAAAAG	0.353													6	67					0	0	0.00116845	0	0
RTTN	25914	broad.mit.edu	37	18	67727214	67727214	+	Silent	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:67727214T>C	uc002lkp.2	-	36	4880	c.4812A>G	c.(4810-4812)AAA>AAG	p.K1604K	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Silent_p.K692K|RTTN_uc010dqp.2_5'UTR	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	1604							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				AAACACACAGTTTGGGCAGGG	0.428													14	18					0	0	0.00121646	0	0
ZNF236	7776	broad.mit.edu	37	18	74637500	74637500	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:74637500C>T	uc002lmi.2	+	22	4209	c.4011C>T	c.(4009-4011)GCC>GCT	p.A1337A	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	1337					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		TTCTCCCTGCCTCTGTGTCAG	0.493													16	20					0	0	0.000566183	0	0
C19orf26	255057	broad.mit.edu	37	19	1231091	1231091	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:1231091G>A	uc002lrm.2	-	9	1420	c.1145C>T	c.(1144-1146)TCA>TTA	p.S382L		NM_152769	NP_689982	Q8N350	DOS_HUMAN	downstream of Stk11	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane					0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCATCTACTGAAAAATACCT	0.706										HNSCC(14;0.022)			6	28					0	0	0.000157383	0	0
TLE6	79816	broad.mit.edu	37	19	2994037	2994037	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:2994037G>A	uc002lwu.2	+	15	1589	c.1189G>A	c.(1189-1191)GGA>AGA	p.G397R	TLE6_uc002lwt.2_Missense_Mutation_p.G520R|TLE6_uc010dtg.2_Missense_Mutation_p.G520R|TLE6_uc002lwv.2_Missense_Mutation_p.G301R	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	397	WD 6.				regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCAAGCGTTGGAATGGACGA	0.587													6	7					0	0	0.000442599	0	0
TJP3	27134	broad.mit.edu	37	19	3736220	3736220	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:3736220G>A	uc010xhv.1	+	10	1284	c.1284G>A	c.(1282-1284)CGG>CGA	p.R428R	TJP3_uc010xhs.1_Silent_p.R395R|TJP3_uc010xht.1_Silent_p.R359R|TJP3_uc010xhu.1_Silent_p.R404R|TJP3_uc010xhw.1_Silent_p.R414R	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	409	PDZ 3.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		TCGGGCTGCGGCTGGCAGGGG	0.677													9	17					0	0	0.000673444	0	0
FSD1	79187	broad.mit.edu	37	19	4323568	4323568	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:4323568G>A	uc002lzy.2	+	13	1572	c.1419G>A	c.(1417-1419)CAG>CAA	p.Q473Q	FSD1_uc002lzz.2_3'UTR|FSD1_uc002maa.2_Silent_p.Q286Q	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	473	B30.2/SPRY.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGGCCTGCAGGTCCCCAGTG	0.677													5	25					0	0	0.00116845	0	0
SAFB	6294	broad.mit.edu	37	19	5648043	5648043	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:5648043C>T	uc002mcf.2	+	6	679	c.626C>T	c.(625-627)TCC>TTC	p.S209F	SAFB_uc010xiq.1_Missense_Mutation_p.S209F|SAFB_uc002mcg.2_Missense_Mutation_p.S209F|SAFB_uc002mce.3_Missense_Mutation_p.S209F|SAFB_uc010xir.1_Missense_Mutation_p.S209F|SAFB_uc010xis.1_Missense_Mutation_p.S140F|SAFB_uc010xit.1_Missense_Mutation_p.S52F|SAFB_uc010xiu.1_Missense_Mutation_p.S8F	NM_002967	NP_002958	Q15424	SAFB1_HUMAN	scaffold attachment factor B	209					chromatin organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding			ovary(1)|liver(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;0.000222)		GAAGAGCCATCCCTGGAGCCA	0.363													19	38					0	0	0.000229342	0	0
SAFB	6294	broad.mit.edu	37	19	5668275	5668275	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:5668275C>T	uc002mcf.2	+	21	2774	c.2721C>T	c.(2719-2721)AGC>AGT	p.S907S	SAFB_uc002mcg.2_Silent_p.S909S|SAFB_uc002mce.3_Silent_p.S908S|SAFB_uc010xir.1_Silent_p.S906S|SAFB_uc010xis.1_Silent_p.S840S|SAFB_uc010xit.1_Silent_p.S751S|SAFB_uc010xiu.1_Silent_p.S708S	NM_002967	NP_002958	Q15424	SAFB1_HUMAN	scaffold attachment factor B	907	Interaction with SAFB2.				chromatin organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding			ovary(1)|liver(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;0.000222)		GCAGGCCCAGCGATGCCCGCT	0.627													12	42					0	0	0.000151284	0	0
INSR	3643	broad.mit.edu	37	19	7166349	7166349	+	Silent	SNP	T	A	A	rs77792535	by1000genomes	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:7166349T>A	uc002mgd.1	-	8	1786	c.1677A>T	c.(1675-1677)GTA>GTT	p.V559V	INSR_uc002mge.1_Silent_p.V559V|INSR_uc002mgf.2_Silent_p.V559V	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	559					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGTCAATGTCTACCACCGTCC	0.552													25	229					0	0	0.00106085	0	0
INSR	3643	broad.mit.edu	37	19	7267787	7267788	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:7267787_7267788CG>AT	uc002mgd.1	-	2	329_330	c.220_221CG>AT	c.(220-222)CGA>ATA	p.R74I	INSR_uc002mge.1_Missense_Mutation_p.R74I|INSR_uc002mgf.2_Missense_Mutation_p.R74I	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	74					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACTGAGGTCTCGGAAATCTTCG	0.51													9	466					0	0	6.4e-05	0	0
C19orf45	374877	broad.mit.edu	37	19	7570468	7570468	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:7570468G>C	uc002mgm.2	+	6	1102	c.961G>C	c.(961-963)GGC>CGC	p.G321R	C19orf45_uc010xjo.1_5'UTR	NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	321											0						TTGGTGCCCCGGCCCCGGCAG	0.418													7	36					0	0	0.000157383	0	0
MARCH2	51257	broad.mit.edu	37	19	8486881	8486881	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:8486881C>T	uc002mjv.2	+	3	598	c.157C>T	c.(157-159)CGT>TGT	p.R53C	MARCH2_uc002mjw.2_Missense_Mutation_p.R53C|MARCH2_uc002mjx.2_Missense_Mutation_p.R53C	NM_016496	NP_057580	Q9P0N8	MARH2_HUMAN	membrane-associated ring finger (C3HC4) 2	53					endocytosis	cytoplasmic vesicle|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CACCGTCATCCGTGCCTTGGA	0.617													11	44					0	0	0.000566183	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8661001	8661001	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:8661001G>A	uc002mkj.1	-	11	1567	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	ADAMTS10_uc002mkk.1_Silent_p.F63F	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	431	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						ATGACCACACGAATGGGTTGG	0.592													22	71					0	0	0.000375601	0	0
MUC16	94025	broad.mit.edu	37	19	9056883	9056883	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:9056883G>A	uc002mkp.2	-	3	30767	c.30563C>T	c.(30562-30564)TCT>TTT	p.S10188F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10190	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCAGGAGAAGAAGGTGTATT	0.463													5	35					0	0	0.00116845	0	0
MUC16	94025	broad.mit.edu	37	19	9060338	9060338	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:9060338C>T	uc002mkp.2	-	3	27312	c.27108G>A	c.(27106-27108)ATG>ATA	p.M9036I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9038	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGACTTGTGTCATGGAGTCCT	0.532													7	46					0	0	8.12818e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9065219	9065219	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:9065219G>A	uc002mkp.2	-	3	22431	c.22227C>T	c.(22225-22227)TCC>TCT	p.S7409S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7411	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGTAATGTGGAAGAAACAG	0.522													7	23					0	0	8.12818e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9065230	9065230	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:9065230G>A	uc002mkp.2	-	3	22420	c.22216C>T	c.(22216-22218)CCT>TCT	p.P7406S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7408	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGAAACAGGAGAAGGTGAG	0.527													6	22					0	0	0.00116845	0	0
MUC16	94025	broad.mit.edu	37	19	9067930	9067930	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:9067930C>T	uc002mkp.2	-	3	19720	c.19516G>A	c.(19516-19518)GAA>AAA	p.E6506K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6508	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGTTTTTTCCACAGAGGGT	0.468													7	20					0	0	8.12818e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9083352	9083352	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:9083352C>T	uc002mkp.2	-	1	8667	c.8463G>A	c.(8461-8463)ATG>ATA	p.M2821I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2821	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.M2821I(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACCTGGGTTCATGGTCAGAG	0.502													9	31					0	0	0.000274275	0	0
DNMT1	1786	broad.mit.edu	37	19	10259681	10259681	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:10259681G>A	uc002mng.2	-	26	2731	c.2551C>T	c.(2551-2553)CCC>TCC	p.P851S	DNMT1_uc010xlc.1_Missense_Mutation_p.P867S|DNMT1_uc002mnh.2_Missense_Mutation_p.P746S|DNMT1_uc010xld.1_Missense_Mutation_p.P851S	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	851	BAH 1.				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	AGGGACTCGGGATCCATGCCT	0.383													5	35					0	0	0.00116845	0	0
ZNF653	115950	broad.mit.edu	37	19	11609136	11609136	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:11609136G>A	uc002mrz.1	-	2	371	c.318C>T	c.(316-318)GTC>GTT	p.V106V		NM_138783	NP_620138	Q96CK0	ZN653_HUMAN	zinc finger protein 653	106					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCTTTTTGGGGACCTGCTCCC	0.522													31	110					0	0	0.000953801	0	0
BEST2	54831	broad.mit.edu	37	19	12865695	12865695	+	Silent	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:12865695T>C	uc002mux.2	+	4	486	c.486T>C	c.(484-486)TTT>TTC	p.F162F		NM_017682	NP_060152	Q8NFU1	BEST2_HUMAN	vitelliform macular dystrophy 2-like 1	162	Cytoplasmic (Potential).				membrane depolarization|sensory perception of smell	chloride channel complex|cilium|plasma membrane	chloride channel activity			ovary(1)|pancreas(1)	2						CTCCAGGGTTTATGACCCGCG	0.617													5	11					0	0	0.00116845	0	0
GCDH	2639	broad.mit.edu	37	19	13007022	13007022	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:13007022C>T	uc002mvq.2	+	8	716	c.639C>T	c.(637-639)ATC>ATT	p.I213I	GCDH_uc010xms.1_Silent_p.I180I|GCDH_uc002mvp.2_Silent_p.I213I|GCDH_uc010xmt.1_Intron|GCDH_uc010xmu.1_Silent_p.I169I	NM_000159	NP_000150	Q92947	GCDH_HUMAN	glutaryl-Coenzyme A dehydrogenase isoform a	213	FAD.				lysine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|glutaryl-CoA dehydrogenase activity|protein binding				0						TCCCCAGGATCACGAACTCGC	0.612													8	37					0	0	0.000157383	0	0
NFIX	4784	broad.mit.edu	37	19	13186433	13186433	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:13186433C>T	uc010xmx.1	+	6	980	c.927C>T	c.(925-927)TCC>TCT	p.S309S	NFIX_uc002mwd.2_Silent_p.S301S|NFIX_uc002mwe.2_Silent_p.S293S|NFIX_uc002mwf.2_Silent_p.S304S|NFIX_uc002mwg.1_Silent_p.S300S			Q14938	NFIX_HUMAN	RecName: Full=Nuclear factor 1;	301					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(19;8.2e-22)			CAGGCCGTTCCCCAGCAGCTG	0.612													6	18					0	0	0.00116845	0	0
NANOS3	342977	broad.mit.edu	37	19	13988132	13988132	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:13988132G>A	uc002mxj.3	+	1	183	c.70G>A	c.(70-72)GAG>AAG	p.E24K		NM_001098622	NP_001092092	P60323	NANO3_HUMAN	nanos homolog 3	24					anti-apoptosis|germ cell development|multicellular organismal development|oogenesis|regulation of cell cycle|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|nucleus|stress granule	RNA binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			GAGTGGGAAAGAGGGTCCTGA	0.627													33	101					0	0	0.000491102	0	0
Unknown	0	broad.mit.edu	37	19	15881856	15881856	+	RNA	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:15881856G>A	uc002nbo.2	-	6		c.1042C>T			uc010xor.1_Missense_Mutation_p.S174F					Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		TGTTCTTGAGGAAATCACAAT	0.527													8	30					0	0	0.000157383	0	0
CYP4F11	57834	broad.mit.edu	37	19	16034789	16034789	+	Missense_Mutation	SNP	G	A	A	rs147948717		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:16034789G>A	uc002nbu.2	-	7	787	c.751C>T	c.(751-753)CCT>TCT	p.P251S	CYP4F11_uc010eab.1_Missense_Mutation_p.P251S|CYP4F11_uc002nbt.2_Missense_Mutation_p.P251S	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	251					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						TGCCCATCAGGAGTGAGATAA	0.557													26	74					0	0	0.000586117	0	0
NWD1	284434	broad.mit.edu	37	19	16902224	16902224	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:16902224C>T	uc002neu.3	+	14	3426	c.3004C>T	c.(3004-3006)CCT>TCT	p.P1002S	NWD1_uc002net.3_Missense_Mutation_p.P867S|NWD1_uc002nev.3_Missense_Mutation_p.P796S			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1002	WD 5.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TGCCTCTGATCCTTGGATGTG	0.522													24	71					0	0	0.000295444	0	0
USHBP1	83878	broad.mit.edu	37	19	17361183	17361183	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:17361183C>T	uc002nfs.1	-	13	2076	c.1963G>A	c.(1963-1965)GAA>AAA	p.E655K	USHBP1_uc002nfr.1_Missense_Mutation_p.E281K|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.E591K	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	655	Potential.						PDZ domain binding			ovary(1)	1						CGTTGCTCTTCCTGCTTCCGG	0.672													10	46					0	0	0.000673444	0	0
KCNN1	3780	broad.mit.edu	37	19	18100600	18100600	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:18100600G>A	uc002nht.2	+	8	1556	c.1246G>A	c.(1246-1248)GAC>AAC	p.D416N	KCNN1_uc010xqa.1_Missense_Mutation_p.D416N	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	416	Calmodulin-binding (By similarity).				synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						GAAGAAGCCAGACCAAGCCCG	0.532													28	82					0	0	0.000878237	0	0
LOC284441	284441	broad.mit.edu	37	19	20369872	20369872	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:20369872G>A	uc002nov.2	+	1	1416	c.665G>A	c.(664-666)GGT>GAT	p.G222D		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						GAAGGAGTTGGTGTTGCTGAA	0.408													10	21					0	0	0.000442599	0	0
ZNF85	7639	broad.mit.edu	37	19	21117843	21117843	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:21117843C>T	uc002npg.3	+	3	346	c.219C>T	c.(217-219)GCC>GCT	p.A73A	ZNF85_uc002npf.2_RNA|ZNF85_uc002nph.1_RNA|ZNF85_uc010ecn.2_Intron|ZNF85_uc010eco.2_5'Flank|ZNF85_uc002npi.2_5'Flank	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	73	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						TCATGGTGGCCAAACCCACAG	0.428													8	10					0	0	0.000157383	0	0
ZNF208	7757	broad.mit.edu	37	19	22155532	22155532	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:22155532C>T	uc002nqp.2	-	5	2153	c.2004G>A	c.(2002-2004)AAG>AAA	p.K668K	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TATGAATTTTCTTATGATAAC	0.353													3	16					0	0	0.000602214	0	0
ZNF208	7757	broad.mit.edu	37	19	22171599	22171599	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:22171599T>C	uc002nqp.2	-	2	265	c.116A>G	c.(115-117)AAC>AGC	p.N39S	ZNF208_uc002nqo.1_Missense_Mutation_p.N39S|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GAAGACCAGGTTTCTGTAGTT	0.333													19	95					0	0	0.000295444	0	0
Unknown	0	broad.mit.edu	37	19	22780198	22780198	+	RNA	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:22780198G>A	uc002nqu.3	+	2		c.276G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		CACTCACCTGGAGATGTGAGT	0.408													8	34					0	0	0.000442599	0	0
Unknown	0	broad.mit.edu	37	19	23159845	23159845	+	RNA	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:23159845C>T	uc002nqy.1	-	3		c.305G>A			uc002nqz.1_Silent_p.V34V					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		TTCTCAATATCACTTTTTGGA	0.328													7	21					0	0	8.12818e-05	0	0
RHPN2	85415	broad.mit.edu	37	19	33490582	33490582	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:33490582C>T	uc002nuf.2	-	10	1201	c.1135G>A	c.(1135-1137)GAG>AAG	p.E379K	RHPN2_uc010xro.1_Missense_Mutation_p.E228K|RHPN2_uc002nue.2_Missense_Mutation_p.E109K	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	379	BRO1.				signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					AGGCACTTCTCCTGGTGGTCC	0.577													11	41					0	0	0.000978159	0	0
ZNF566	84924	broad.mit.edu	37	19	36940055	36940055	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:36940055G>A	uc002oea.3	-	5	1163	c.1081C>T	c.(1081-1083)CAT>TAT	p.H361Y	ZNF566_uc010xte.1_Missense_Mutation_p.H361Y|ZNF566_uc010xtf.1_Missense_Mutation_p.H362Y|ZNF566_uc002oeb.3_Missense_Mutation_p.H361Y|ZNF566_uc002oec.3_Missense_Mutation_p.H257Y|ZNF566_uc010xtg.1_Missense_Mutation_p.H257Y	NM_032838	NP_116227	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 1	361	C2H2-type 5.|C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TCCCCAGTATGAATTCTCTGA	0.383													13	33					0	0	0.000219431	0	0
RYR1	6261	broad.mit.edu	37	19	38994938	38994938	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:38994938G>A	uc002oit.2	+	50	8135	c.8005G>A	c.(8005-8007)GAG>AAG	p.E2669K	RYR1_uc002oiu.2_Missense_Mutation_p.E2669K|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2669	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGTCACCTCAGAGGAGGAGCT	0.587													4	38					0	0	8.12818e-05	0	0
RYR1	6261	broad.mit.edu	37	19	39001302	39001302	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:39001302C>T	uc002oit.2	+	60	9133	c.9003C>T	c.(9001-9003)ATC>ATT	p.I3001I	RYR1_uc002oiu.2_Silent_p.I3001I|RYR1_uc002oiv.1_5'UTR|RYR1_uc010xuf.1_5'Flank	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3001	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GTCTCCAGATCCTGCTCCCTT	0.577													52	192					0	0	0.000781405	0	0
RYR1	6261	broad.mit.edu	37	19	39010014	39010014	+	Silent	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:39010014G>C	uc002oit.2	+	67	10309	c.10179G>C	c.(10177-10179)CTG>CTC	p.L3393L	RYR1_uc002oiu.2_Silent_p.L3393L|RYR1_uc002oiv.1_Silent_p.L313L|RYR1_uc010xuf.1_Silent_p.L313L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3393					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCGAGCTGCTGGTGCGGGACG	0.677													3	4					0	0	6.4e-05	0	0
CYP2B6	1555	broad.mit.edu	37	19	41510274	41510274	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:41510274G>A	uc002opr.1	+	3	414	c.407G>A	c.(406-408)GGG>GAG	p.G136E	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Missense_Mutation_p.G96E	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	136					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	AGGGACTTCGGGATGGGAAAG	0.567													14	28					0	0	0.000422831	0	0
PSG6	5675	broad.mit.edu	37	19	43411155	43411155	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:43411155G>A	uc002ovj.1	-	5	1211	c.1159C>T	c.(1159-1161)CAT>TAT	p.H387Y	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.H394Y|PSG6_uc002ovi.2_Missense_Mutation_p.H388Y|PSG6_uc010xwk.1_Missense_Mutation_p.H227Y|PSG11_uc002ovk.1_Missense_Mutation_p.H386Y|PSG6_uc002ove.1_Missense_Mutation_p.H177Y|PSG6_uc002ovf.1_Missense_Mutation_p.H294Y|PSG6_uc002ovg.1_Missense_Mutation_p.H387Y	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	387	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				AGCCCGCTATGATTTGTAGTA	0.453													102	210					0	0	0.000781405	0	0
PSG7	5676	broad.mit.edu	37	19	43433850	43433850	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:43433850G>A	uc002ovl.3	-	4	555	c.453C>T	c.(451-453)ATC>ATT	p.I151I	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_5'Flank|PSG7_uc002out.1_5'UTR|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Silent_p.I29I	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	151	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TGCTGCTGGAGATGGAGGGTT	0.517													58	99					0	0	0.000781405	0	0
PSG11	5680	broad.mit.edu	37	19	43519471	43519471	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:43519471C>T	uc002ovm.1	-	4	868	c.761G>A	c.(760-762)GGA>GAA	p.G254E	PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG11_uc002ovn.1_Missense_Mutation_p.G260E|PSG11_uc002ovo.1_Missense_Mutation_p.G132E|PSG11_uc002ovp.1_Missense_Mutation_p.G132E	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	254	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GAGGTTCTCTCCTGAATAGTA	0.463													34	105					0	0	0.000692331	0	0
PVRL2	5819	broad.mit.edu	37	19	45375346	45375346	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:45375346A>G	uc002ozw.1	+	3	1105	c.715A>G	c.(715-717)AAA>GAA	p.K239E	PVRL2_uc002ozv.2_Missense_Mutation_p.K239E	NM_001042724	NP_001036189	Q92692	PVRL2_HUMAN	poliovirus receptor related 2 isoform delta	239	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|adhesion to symbiont|cell junction assembly|homophilic cell adhesion|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity|viral envelope fusion with host membrane|virion attachment, binding of host cell surface coreceptor	cell surface|integral to membrane|zonula adherens	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0	Lung NSC(12;0.00195)|all_lung(12;0.00522)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0143)		GGTCACCTGCAAAGTGGAGCA	0.602													96	225					0	0	0.000781405	0	0
RELB	5971	broad.mit.edu	37	19	45515359	45515359	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:45515359C>T	uc002paj.1	+	5	455	c.329C>T	c.(328-330)CCC>CTC	p.P110L		NM_006509	NP_006500	Q01201	RELB_HUMAN	reticuloendotheliosis viral oncogene homolog B	110						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00986)		TGGGGCTGCCCCCTGGGCCGA	0.761													12	35					0	0	0.000308642	0	0
SYMPK	8189	broad.mit.edu	37	19	46326660	46326660	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:46326660G>A	uc002pdn.2	-	20	2915	c.2670C>T	c.(2668-2670)TTC>TTT	p.F890F	SYMPK_uc002pdo.1_Silent_p.F890F|SYMPK_uc002pdp.1_Silent_p.F890F	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	890					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		CCGGGATGAGGAAGCGGACGT	0.627													20	34					0	0	0.000375601	0	0
GLTSCR2	29997	broad.mit.edu	37	19	48253522	48253522	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:48253522C>T	uc002phm.2	+	3	401	c.377C>T	c.(376-378)TCC>TTC	p.S126F	GLTSCR2_uc002phk.2_Missense_Mutation_p.S126F|GLTSCR2_uc002phl.2_Missense_Mutation_p.S126F|GLTSCR2_uc010elj.2_Missense_Mutation_p.S126F|GLTSCR2_uc010elk.1_5'Flank	NM_015710	NP_056525	Q9NZM5	GSCR2_HUMAN	glioma tumor suppressor candidate region gene 2	126						nucleolus				central_nervous_system(1)	1		all_cancers(25;1.47e-06)|all_lung(116;6.89e-05)|all_epithelial(76;0.000108)|Lung NSC(112;0.000117)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000301)|OV - Ovarian serous cystadenocarcinoma(262;0.00031)|Epithelial(262;0.0149)|GBM - Glioblastoma multiforme(486;0.0278)		GAGAACACATCCAAAGTCCCT	0.542													10	21					0	0	0.000151284	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50462043	50462044	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:50462043_50462044CC>TT	uc010ybh.1	-	7	1310_1311	c.1219_1220GG>AA	c.(1219-1221)GGA>AAA	p.G407K	SIGLEC11_uc010ybi.1_Missense_Mutation_p.G407K	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	407	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		CACGGTCTGTCCCCACCGGGTC	0.683													18	50					0	0	6.4e-05	0	0
MYH14	79784	broad.mit.edu	37	19	50713817	50713817	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:50713817C>T	uc002prr.1	+	2	242	c.195C>T	c.(193-195)TTC>TTT	p.F65F	MYH14_uc010enu.1_Silent_p.F65F|MYH14_uc002prq.1_Silent_p.F65F	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	65	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		TTCACGGGTTCGAGGCGGCGG	0.761													4	3					0	0	0.000602214	0	0
SYT3	84258	broad.mit.edu	37	19	51129210	51129210	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:51129210G>A	uc002pst.2	-	5	1980	c.1346C>T	c.(1345-1347)ACC>ATC	p.T449I	SYT3_uc002psv.2_Missense_Mutation_p.T449I|SYT3_uc010ycd.1_Missense_Mutation_p.T449I	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	449	C2 2.|Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		GATGGTCACGGTGAGGCGCCC	0.458													9	38					0	0	0.000978159	0	0
KLK1	3816	broad.mit.edu	37	19	51323615	51323615	+	Silent	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:51323615T>C	uc002ptk.1	-	3	330	c.291A>G	c.(289-291)CCA>CCG	p.P97P	KLK1_uc010ycg.1_RNA	NM_002257	NP_002248	P06870	KLK1_HUMAN	kallikrein 1 preproprotein	97	Peptidase S1.				proteolysis	nucleus	serine-type endopeptidase activity				0		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00399)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCCAGGGTGTGGGAAGCTCT	0.567													22	196					0	0	0.00047179	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51631291	51631291	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:51631291C>T	uc002pvu.2	+	5	1168	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	SIGLEC9_uc010yct.1_Silent_p.F367F	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	367	Helical; (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		GCGTCATCTTCGTTGTGTAAG	0.612													54	100					0	0	0.000781405	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51650068	51650068	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:51650068C>T	uc002pvv.1	+	5	1154	c.1085C>T	c.(1084-1086)ACA>ATA	p.T362I	SIGLEC7_uc002pvw.1_Missense_Mutation_p.T269I|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	362	Helical; (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		GCTGGAGCCACAGCCCTGGTC	0.572													26	82					0	0	0.000339439	0	0
SIGLEC6	946	broad.mit.edu	37	19	52031079	52031079	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:52031079C>T	uc002pwy.2	-	7	1272	c.1110G>A	c.(1108-1110)GTG>GTA	p.V370V	SIGLEC6_uc002pwz.2_Silent_p.V354V|SIGLEC6_uc002pxa.2_Intron|SIGLEC6_uc010ydb.1_Silent_p.V307V|SIGLEC6_uc010ydc.1_Intron|SIGLEC6_uc010eoz.1_Intron	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	370	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		TTCTAGTCTTCACTCTGAGGG	0.502													18	84					0	0	0.000958276	0	0
ZNF577	84765	broad.mit.edu	37	19	52376878	52376878	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:52376878T>C	uc010yde.1	-	7	756	c.365A>G	c.(364-366)AAG>AGG	p.K122R	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Intron|ZNF577_uc002pxv.2_Missense_Mutation_p.K115R|ZNF577_uc002pxw.2_Intron	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	122					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		TTTGTCACGCTTGATATGGAG	0.393													10	80					0	0	0.000442599	0	0
ZNF534	147658	broad.mit.edu	37	19	52938438	52938438	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:52938438G>A	uc002pzk.2	+	3	347	c.286G>A	c.(286-288)GAG>AAG	p.E96K	ZNF534_uc002pzj.1_Missense_Mutation_p.E83K|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Missense_Mutation_p.E83K	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	96					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGATGGCAGGGAGTGCATCAA	0.398													6	31					0	0	0.000157383	0	0
MIR520B	574473	broad.mit.edu	37	19	54204491	54204491	+	RNA	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:54204491G>A	hsa-mir-520b|MI0003155	+			c.11G>A			MIR518B_hsa-mir-518b|MI0003156_5'Flank																	0						CCCTCTACAGGGAAGCGCTTT	0.423													15	38					0	0	0.00074312	0	0
LILRB2	10288	broad.mit.edu	37	19	54782925	54782925	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:54782925G>A	uc002qfb.2	-	6	963	c.697C>T	c.(697-699)CCT>TCT	p.P233S	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.P233S|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.P233S|LILRB2_uc010yet.1_Missense_Mutation_p.P117S|LILRB2_uc010yeu.1_Intron	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	233	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GCCACGACAGGACCCGGCTGC	0.572													19	45					0	0	0.000295444	0	0
LILRA5	353514	broad.mit.edu	37	19	54818743	54818743	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:54818743C>T	uc002qfe.2	-	7	975	c.855G>A	c.(853-855)CAG>CAA	p.Q285Q	LILRA5_uc002qff.2_Silent_p.Q273Q	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	285	Helical; (Potential).				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGTGCCAATCCTGAAATATCA	0.527													36	49					0	0	0.00058488	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55045023	55045023	+	RNA	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:55045023C>T	uc010yfa.1	+	3		c.249C>T			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		GTGACTCTCTCCTGTCATTCC	0.537													16	44					0	0	0.000422831	0	0
LILRA1	11024	broad.mit.edu	37	19	55107358	55107358	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:55107358G>A	uc002qgh.1	+	6	1098	c.916G>A	c.(916-918)GAG>AAG	p.E306K	LILRA2_uc010yfg.1_Missense_Mutation_p.E304K|LILRA1_uc010yfh.1_Missense_Mutation_p.E306K	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	306	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		CCTCTCCTCCGAGTGGTCGGC	0.687													13	70					0	0	0.000219431	0	0
SYT5	6861	broad.mit.edu	37	19	55687094	55687094	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:55687094C>T	uc002qjm.1	-	4	1583	c.523G>A	c.(523-525)GAG>AAG	p.E175K	SYT5_uc002qjp.2_Missense_Mutation_p.E172K|SYT5_uc002qjn.1_Missense_Mutation_p.E175K|SYT5_uc002qjo.1_Missense_Mutation_p.E175K	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V	175	Cytoplasmic (Potential).|C2 1.				energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		GCGAAGGTCTCCCCAAAGTGA	0.622													35	68					0	0	0.000374591	0	0
NLRP8	126205	broad.mit.edu	37	19	56459471	56459471	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:56459471C>T	uc002qmh.2	+	1	274	c.203C>T	c.(202-204)ACC>ATC	p.T68I	NLRP8_uc010etg.2_Missense_Mutation_p.T68I	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	68	DAPIN.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AGTACTGGCACCATGCCCATC	0.547													12	20					0	0	0.000151284	0	0
NLRP5	126206	broad.mit.edu	37	19	56565173	56565173	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:56565173G>A	uc002qmj.2	+	13	3298	c.3298G>A	c.(3298-3300)GGG>AGG	p.G1100R	NLRP5_uc002qmi.2_Missense_Mutation_p.G1081R	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1100						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GGCGAGACTCGGGTAACTTCC	0.602													11	49					0	0	0.000308642	0	0
ZNF835	90485	broad.mit.edu	37	19	57175842	57175842	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:57175842C>G	uc010ygo.1	-	2	791	c.791G>C	c.(790-792)CGC>CCC	p.R264P	ZNF835_uc010ygn.1_Missense_Mutation_p.R242P	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						GGTGTGGATGCGCTGGTGCTC	0.692													9	14					0	0	0.000673444	0	0
ZIM3	114026	broad.mit.edu	37	19	57646923	57646923	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:57646923G>A	uc002qnz.1	-	5	1168	c.782C>T	c.(781-783)TCC>TTC	p.S261F		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	261	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGATTTCCAGGAAAAGGCTTT	0.378													44	92					0	0	0.000437636	0	0
ZNF530	348327	broad.mit.edu	37	19	58117462	58117462	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:58117462C>T	uc002qpk.2	+	3	789	c.569C>T	c.(568-570)CCC>CTC	p.P190L	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CAGGTGACTCCCACCATTGAG	0.488													25	92					0	0	0.00127121	0	0
CMPK2	129607	broad.mit.edu	37	2	7001510	7001510	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:7001510G>A	uc002qyo.2	-	3	906	c.797C>T	c.(796-798)ACC>ATC	p.T266I	CMPK2_uc010yis.1_Missense_Mutation_p.T266I|CMPK2_uc010ewv.2_Missense_Mutation_p.T266I	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	266	ATP (Potential).				dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GGTCACCGTGGTTTTACCTGC	0.443													11	8					0	0	0.000673444	0	0
SDC1	6382	broad.mit.edu	37	2	20402885	20402885	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:20402885G>A	uc002rdo.1	-	4	1025	c.726C>T	c.(724-726)GCC>GCT	p.A242A	SDC1_uc002rdp.1_Silent_p.A242A|SDC1_uc010exv.2_Intron	NM_002997	NP_002988	P18827	SDC1_HUMAN	syndecan 1 precursor	242	Extracellular (Potential).	Cleavage (By similarity).			lipid metabolic process|lipoprotein metabolic process|myoblast development|striated muscle cell development	cytoplasm|extracellular region|focal adhesion|integral to plasma membrane	cytoskeletal protein binding|protein C-terminus binding			ovary(4)|skin(1)	5	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)			OV - Ovarian serous cystadenocarcinoma(76;0.221)		GGCCCTGTGAGGCCCCCGTGG	0.622													22	51					0	0	0.00047179	0	0
SDC1	6382	broad.mit.edu	37	2	20403831	20403831	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:20403831G>A	uc002rdo.1	-	3	669	c.370C>T	c.(370-372)CGA>TGA	p.R124*	SDC1_uc002rdp.1_Nonsense_Mutation_p.R124*|SDC1_uc010exv.2_Nonsense_Mutation_p.R124*|SDC1_uc010exw.1_RNA	NM_002997	NP_002988	P18827	SDC1_HUMAN	syndecan 1 precursor	124	Extracellular (Potential).				lipid metabolic process|lipoprotein metabolic process|myoblast development|striated muscle cell development	cytoplasm|extracellular region|focal adhesion|integral to plasma membrane	cytoskeletal protein binding|protein C-terminus binding			ovary(4)|skin(1)	5	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)			OV - Ovarian serous cystadenocarcinoma(76;0.221)		TCCCTGGGTCGGGGGGTGGCC	0.701													27	55					0	0	0.000409698	0	0
APOB	338	broad.mit.edu	37	2	21232202	21232203	+	Missense_Mutation	DNP	CG	AT	AT	rs146538280		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:21232202_21232203CG>AT	uc002red.2	-	26	7665_7666	c.7537_7538CG>AT	c.(7537-7539)CGA>ATA	p.R2513I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2513					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity	p.R2513*(1)		ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TAGGGTCTCTCGGAATTTGGCC	0.436													13	488					0	0	6.4e-05	0	0
ASXL2	55252	broad.mit.edu	37	2	25982395	25982395	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:25982395A>G	uc002rgs.2	-	8	1116	c.895T>C	c.(895-897)TGC>CGC	p.C299R	ASXL2_uc002rgt.1_Missense_Mutation_p.C39R	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	299					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGTTGCTGGCAATCTCCAGGA	0.418													53	105					0	0	0.000781405	0	0
OTOF	9381	broad.mit.edu	37	2	26717889	26717889	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:26717889G>T	uc002rhk.2	-	9	945	c.818C>A	c.(817-819)CCT>CAT	p.P273H		NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	273	Cytoplasmic (Potential).|C2 1.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCACACCACAGGGTCCATGTT	0.587													20	69					1.50039e-11	1.10609e-10	0.000229342	1	0
C2orf71	388939	broad.mit.edu	37	2	29293482	29293482	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:29293482C>T	uc002rmt.1	-	1	3646	c.3646G>A	c.(3646-3648)GAA>AAA	p.E1216K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	1216					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						AGCTGGGATTCATAAGAGGTG	0.602													21	68					0	0	0.000375601	0	0
CRIM1	51232	broad.mit.edu	37	2	36706774	36706774	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:36706774G>A	uc002rpd.2	+	7	1348	c.1309G>A	c.(1309-1311)GTC>ATC	p.V437I		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	437	VWFC 2.|Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				CGTTGCGACCGTCTGCGGACA	0.577													24	45					0	0	0.001512	0	0
VIT	5212	broad.mit.edu	37	2	37035854	37035854	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:37035854C>T	uc002rpl.2	+	15	1850	c.1629C>T	c.(1627-1629)TCC>TCT	p.S543S	VIT_uc002rpm.2_Silent_p.S521S|VIT_uc010ezv.2_Silent_p.S499S|VIT_uc010ezw.2_Silent_p.S500S	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	528	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				TTGAGATTTCCGACACGGACA	0.577													30	46					0	0	0.00178596	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43933532	43933533	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:43933532_43933533CC>AA	uc010yny.1	+	10	1881_1882	c.1798_1799CC>AA	c.(1798-1800)CCA>AAA	p.P600K	PLEKHH2_uc002rte.3_Missense_Mutation_p.P600K|PLEKHH2_uc002rtf.3_Missense_Mutation_p.P599K	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	600						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CATGACCACCCCAGTGTATACA	0.361													13	580					0	0	6.4e-05	0	0
LRPPRC	10128	broad.mit.edu	37	2	44190810	44190811	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:44190810_44190811CC>AA	uc002rtr.2	-	12	1462_1463	c.1404_1405GG>TT	c.(1402-1407)TTGGGA>TTTTGA	p.468_469LG>F*	LRPPRC_uc010yob.1_Nonsense_Mutation_p.368_369LG>F*	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	468_469	PPR 8.				mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GGATGTACTCCCAATTCTTGCA	0.366													13	695					0	0	6.4e-05	0	0
MXD1	4084	broad.mit.edu	37	2	70164402	70164402	+	Silent	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:70164402A>G	uc002sfy.2	+	5	614	c.354A>G	c.(352-354)CAA>CAG	p.Q118Q	MXD1_uc010yqp.1_Silent_p.Q118Q|MXD1_uc010yqq.1_Silent_p.Q55Q|MXD1_uc010yqr.1_RNA|MXD1_uc010yqs.1_Silent_p.Q108Q	NM_002357	NP_002348	Q05195	MAD1_HUMAN	MAX dimerization protein 1	118					cell proliferation|multicellular organismal development	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0						CCGTTCACCAAATCGACCAGC	0.557													37	110					0	0	0.000814825	0	0
MPHOSPH10	10199	broad.mit.edu	37	2	71360237	71360237	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:71360237A>G	uc002sht.1	+	2	651	c.299A>G	c.(298-300)AAT>AGT	p.N100S	MCEE_uc002shs.2_5'Flank|MPHOSPH10_uc010feb.1_Missense_Mutation_p.N100S	NM_005791	NP_005782	O00566	MPP10_HUMAN	M-phase phosphoprotein 10	100					RNA splicing, via transesterification reactions|rRNA processing	chromosome|nucleolus|small nucleolar ribonucleoprotein complex	protein binding			skin(2)|ovary(1)	3						GAAACAATTAATGATGAAGAT	0.373													12	43					0	0	0.000978159	0	0
REG1B	5968	broad.mit.edu	37	2	79314715	79314715	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:79314715G>A	uc002sny.2	-	2	136	c.24C>T	c.(22-24)TTC>TTT	p.F8F	REG1B_uc010ffv.1_Silent_p.F8F|REG1B_uc010ffw.2_Silent_p.F8F	NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor	8					cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						AGATCAGCATGAAGAACGAGT	0.493													6	36					0	0	0.000157383	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518025	84518025	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:84518025G>A	uc010ffz.1	+	1	220	c.83G>A	c.(82-84)TGG>TAG	p.W28*		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						CAGCCGTGGTGGCGTAAGCTG	0.522													20	20					0	0	0.000958276	0	0
DNAH6	1768	broad.mit.edu	37	2	84784929	84784929	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:84784929C>T	uc010fgb.2	+	11	1810	c.1673C>T	c.(1672-1674)TCG>TTG	p.S558L	DNAH6_uc002soo.2_Missense_Mutation_p.S137L|DNAH6_uc002sop.2_Missense_Mutation_p.S137L	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	558	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						GTGCCTGATTCGTATTTTGAT	0.378													53	98					0	0	0.000781405	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88874620	88874621	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:88874620_88874621GG>TT	uc002stc.3	-	13	2582_2583	c.2380_2381CC>AA	c.(2380-2382)CCT>AAT	p.P794N		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	794	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						CCTTACATAAGGAGAAGCTTCA	0.446													13	547					0	0	6.4e-05	0	0
LOC654342	654342	broad.mit.edu	37	2	91843513	91843513	+	RNA	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:91843513G>A	uc002sts.3	-	2		c.57C>T			LOC654342_uc002stt.2_RNA|LOC654342_uc010yub.1_RNA					Homo sapiens cDNA clone IMAGE:4801360.												0						GCTAGCTTGGGGGTCTGGCCA	0.597													5	51					0	0	0.00116845	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95513847	95513847	+	RNA	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:95513847G>C	uc010fhp.2	-	5		c.558C>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TGCTTAAGAAGGATACTGACA	0.353													51	564					0	0	0.000781405	0	0
TEKT4	150483	broad.mit.edu	37	2	95539828	95539828	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:95539828C>T	uc002stw.1	+	3	781	c.688C>T	c.(688-690)CCG>TCG	p.P230S	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	230					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						GCAGGCTCATCCGTACTCCAC	0.667													11	46					0	0	0.000978159	0	0
FER1L5	90342	broad.mit.edu	37	2	97364781	97364781	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:97364781G>A	uc010fia.2	+	41	4600	c.4600_splice	c.e41-1	p.C1534_splice	FER1L5_uc002sws.3_Splice_Site_p.C252_splice|FER1L5_uc010fib.1_Splice_Site|FER1L5_uc002swt.3_Splice_Site_p.C252_splice|FER1L5_uc010yus.1_Splice_Site_p.C251_splice	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2							integral to membrane				ovary(1)	1						TCTGACCCCAGTGTGACCCTT	0.572													4	10					0	0	0.00024832	0	0
C2orf64	493753	broad.mit.edu	37	2	99220599	99220599	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:99220599T>C	uc002syz.2	-	2	242	c.155A>G	c.(154-156)TAC>TGC	p.Y52C	C2orf64_uc002sza.2_Intron	NM_001008215	NP_001008216	Q86WW8	COA5_HUMAN	hypothetical protein LOC493753	52											0						AAAAAATGCGTACTTCAAAGA	0.333													33	79					0	0	0.000953801	0	0
NMS	129521	broad.mit.edu	37	2	101093863	101093863	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:101093863C>T	uc002tan.1	+	5	255	c.248C>T	c.(247-249)CCA>CTA	p.P83L		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	83					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						GCAACACATCCAGTTAAAACT	0.378													13	25					0	0	0.000308642	0	0
IL1R1	3554	broad.mit.edu	37	2	102781254	102781254	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:102781254G>A	uc002tbq.2	+	4	400	c.82G>A	c.(82-84)GAA>AAA	p.E28K	IL1R1_uc010fix.2_Missense_Mutation_p.E28K|IL1R1_uc002tbp.2_Missense_Mutation_p.E28K|IL1R1_uc002tbr.2_Missense_Mutation_p.E28K	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	28	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	GGAACGTGAAGAAAAAATAAT	0.338													13	33					0	0	0.000151284	0	0
SLC9A2	6549	broad.mit.edu	37	2	103300637	103300637	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:103300637C>T	uc002tca.2	+	5	1409	c.1267C>T	c.(1267-1269)CCC>TCC	p.P423S		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	423	Extracellular (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						CCGGACCATTCCCCTGACCTT	0.463													25	53					0	0	0.00127121	0	0
ZC3H6	376940	broad.mit.edu	37	2	113069452	113069452	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:113069452G>A	uc002thq.1	+	5	1079	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_198581	NP_940983	P61129	ZC3H6_HUMAN	zinc finger CCCH-type domain containing 6	229							nucleic acid binding|zinc ion binding			ovary(3)|central_nervous_system(1)	4						CAAACGAAAAGAACGTGGGGG	0.368													12	30					0	0	0.00136819	0	0
IL1F6	27179	broad.mit.edu	37	2	113765409	113765409	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:113765409G>A	uc010yxr.1	+	4	265	c.265G>A	c.(265-267)GAA>AAA	p.E89K		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	89					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						CACCCTTCAGGAAAAGGATAT	0.463													22	82					0	0	0.000375601	0	0
TMEM37	140738	broad.mit.edu	37	2	120194936	120194936	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:120194936G>A	uc002tly.2	+	2	527	c.493G>A	c.(493-495)GAA>AAA	p.E165K		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	165	Helical; (Potential).					integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						GTTTTGGTGCGAATTCACTGC	0.552													64	229					0	0	0.000781405	0	0
GPR17	2840	broad.mit.edu	37	2	128408726	128408726	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:128408726C>T	uc010yzn.1	+	4	1112	c.501C>T	c.(499-501)TCC>TCT	p.S167S	LIMS2_uc002tow.2_5'Flank|LIMS2_uc002tox.2_Intron|LIMS2_uc010fmb.2_Intron|LIMS2_uc002toy.2_Intron|LIMS2_uc010yzm.1_Intron|LIMS2_uc002tpa.2_Intron|LIMS2_uc002toz.2_Intron|LIMS2_uc002tpb.2_Intron|GPR17_uc002tpc.2_Silent_p.S167S|GPR17_uc010yzo.1_Silent_p.S139S|GPR17_uc002tpd.2_Silent_p.S139S	NM_001161415	NP_001154887	Q13304	GPR17_HUMAN	G protein-coupled receptor 17 isoform a	167	Cytoplasmic (Potential).					integral to plasma membrane	chemokine receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	Colorectal(110;0.1)	Ovarian(717;0.15)		BRCA - Breast invasive adenocarcinoma(221;0.0677)		CGGTCAAGTCCCTCAAGCTCC	0.632													24	100					0	0	0.000878237	0	0
CCDC74B	91409	broad.mit.edu	37	2	130899916	130899916	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:130899916G>A	uc002tqm.1	-	3	396	c.334C>T	c.(334-336)CCC>TCC	p.P112S	CCDC74B_uc010yzw.1_Missense_Mutation_p.P214S|CCDC74B_uc002tqn.1_Intron|CCDC74B_uc010yzx.1_3'UTR	NM_207310	NP_997193	Q96LY2	CC74B_HUMAN	coiled-coil domain containing 74B	112											0	Colorectal(110;0.1)					GCGCCCAAGGGAGCAGAGGCC	0.647													5	30					0	0	0.000219431	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131688822	131688822	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:131688822G>A	uc002tsa.1	+	3	812	c.292G>A	c.(292-294)GGA>AGA	p.G98R	ARHGEF4_uc010fmw.1_Missense_Mutation_p.G744R|ARHGEF4_uc002tsb.1_Missense_Mutation_p.G98R|ARHGEF4_uc010fmx.1_Missense_Mutation_p.G98R|ARHGEF4_uc002trz.1_Missense_Mutation_p.G744R	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	98	ABR (APC-binding region) domain.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		GCACAAAGATGGAGTCAAGGT	0.557													4	9					0	0	0.00024832	0	0
POTEE	445582	broad.mit.edu	37	2	132021467	132021467	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:132021467G>A	uc002tsn.2	+	15	2491	c.2439G>A	c.(2437-2439)AAG>AAA	p.K813K	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.K413K|POTEE_uc002tsl.2_Silent_p.K395K|POTEE_uc010fmy.1_Silent_p.K277K	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	813	Actin-like.						ATP binding				0						TGAACCCCAAGGCCAACCGCG	0.607													35	109					0	0	0.000589545	0	0
ACMSD	130013	broad.mit.edu	37	2	135625155	135625155	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:135625155G>A	uc002ttz.2	+	6	560	c.493G>A	c.(493-495)GAA>AAA	p.E165K	ACMSD_uc002tua.2_Missense_Mutation_p.E107K|uc010zbe.1_RNA	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	165					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		GAAGGCAGCCGAAAGGCTGAA	0.493													31	68					0	0	0.000409698	0	0
THSD7B	80731	broad.mit.edu	37	2	138417269	138417269	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:138417269C>T	uc002tva.1	+	24	4324	c.4324C>T	c.(4324-4326)CGG>TGG	p.R1442W	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGCTGCCATTCGGCAGTGCAT	0.443													6	7					0	0	0.000274275	0	0
NXPH2	11249	broad.mit.edu	37	2	139429090	139429090	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:139429090G>A	uc002tvi.2	-	2	197	c.197C>T	c.(196-198)CCC>CTC	p.P66L		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	66	II.				neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		GCCGGGCTTGGGCACCGGAGA	0.552													55	127					0	0	0.000781405	0	0
LRP1B	53353	broad.mit.edu	37	2	141609313	141609313	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:141609313C>A	uc002tvj.1	-	28	5591	c.4619G>T	c.(4618-4620)TGC>TTC	p.C1540F	LRP1B_uc010fnl.1_Missense_Mutation_p.C722F	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1540	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CATGTGAGAGCAGGGGCCTTT	0.443										TSP Lung(27;0.18)			16	71					2.94398e-08	2.163e-07	0.000958276	1	0
LRP1B	53353	broad.mit.edu	37	2	141625352	141625352	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:141625352G>A	uc002tvj.1	-	27	5358	c.4386C>T	c.(4384-4386)ATC>ATT	p.I1462I	LRP1B_uc010fnl.1_Silent_p.I644I	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1462	Extracellular (Potential).|LDL-receptor class B 12.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GACCTCGGATGATTTCTATCA	0.408										TSP Lung(27;0.18)			10	35					0	0	0.000442599	0	0
RIF1	55183	broad.mit.edu	37	2	152293404	152293404	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:152293404G>A	uc002txm.2	+	12	1389	c.1259G>A	c.(1258-1260)GGA>GAA	p.G420E	RIF1_uc002txl.2_Missense_Mutation_p.G420E|RIF1_uc010fnv.1_Missense_Mutation_p.G384E|RIF1_uc002txn.2_Missense_Mutation_p.G420E|RIF1_uc002txo.2_Missense_Mutation_p.G420E|RIF1_uc010zby.1_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	420					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AATTTAGGTGGAATGGCCACA	0.423													16	43					0	0	0.000958276	0	0
NEB	4703	broad.mit.edu	37	2	152553955	152553955	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:152553955G>A	uc010fnx.2	-	15	1465	c.1274C>T	c.(1273-1275)TCC>TTC	p.S425F	NEB_uc010fny.1_5'UTR	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	425	Nebulin 10.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTTTAAGTAGGAATCTTTATA	0.333													42	108					0	0	0.00170553	0	0
FMNL2	114793	broad.mit.edu	37	2	153484861	153484861	+	Silent	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:153484861G>C	uc002tye.2	+	18	2581	c.2214G>C	c.(2212-2214)CGG>CGC	p.R738R	FMNL2_uc010fob.2_Silent_p.R194R|FMNL2_uc002tyf.2_Silent_p.R187R	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	738	FH2.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						GCTTGATGCGGTTCCTACCAA	0.463													17	111					0	0	0.000958276	0	0
CYTIP	9595	broad.mit.edu	37	2	158272369	158272369	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:158272369C>T	uc002tzj.1	-	8	972	c.900G>A	c.(898-900)AGG>AGA	p.R300R	CYTIP_uc010zcl.1_Silent_p.R194R	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	300	Ser-rich.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						TCCGGTTCCTCCTTGAAGATG	0.547													17	73					0	0	0.00121646	0	0
ACVR1C	130399	broad.mit.edu	37	2	158395120	158395120	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:158395120G>A	uc002tzk.3	-	8	1564	c.1321C>T	c.(1321-1323)CGA>TGA	p.R441*	ACVR1C_uc002tzl.3_Nonsense_Mutation_p.R361*|ACVR1C_uc010fof.2_Nonsense_Mutation_p.R284*|ACVR1C_uc010foe.2_Nonsense_Mutation_p.R391*	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	441	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						ATACTTGGTCGAAACTTCTGG	0.388													38	65					0	0	0.00170553	0	0
SCN2A	6326	broad.mit.edu	37	2	166179817	166179817	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:166179817G>A	uc002udc.2	+	12	2113	c.1823G>A	c.(1822-1824)AGA>AAA	p.R608K	SCN2A_uc002udd.2_Missense_Mutation_p.R608K|SCN2A_uc002ude.2_Missense_Mutation_p.R608K	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	608					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GACAGCCGAAGAGACTCTCTG	0.562													5	33					0	0	0.000602214	0	0
SCN2A	6326	broad.mit.edu	37	2	166246021	166246021	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:166246021G>A	uc002udc.2	+	27	5995	c.5705G>A	c.(5704-5706)CGC>CAC	p.R1902H	SCN2A_uc002udd.2_Missense_Mutation_p.R1902H|SCN2A_uc002ude.2_Missense_Mutation_p.R1902H	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1902			R -> T (associated with autism).		myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ACGTTGAAACGCAAACAAGAG	0.433													13	29					0	0	0.000219431	0	0
SCN7A	6332	broad.mit.edu	37	2	167319026	167319026	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:167319026C>T	uc002udu.1	-	9	1083	c.956G>A	c.(955-957)GGA>GAA	p.G319E	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	319					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACACACATATCCTTCAGGACA	0.378													10	40					0	0	0.000151284	0	0
XIRP2	129446	broad.mit.edu	37	2	168100993	168100993	+	Missense_Mutation	SNP	G	A	A	rs143502096	by1000genomes	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:168100993G>A	uc002udx.2	+	8	3109	c.3091G>A	c.(3091-3093)GAA>AAA	p.E1031K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E856K|XIRP2_uc010fpq.2_Missense_Mutation_p.E809K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	856					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCAGTTTGATGAAAGCATTCA	0.368													10	24					0	0	0.000673444	0	0
XIRP2	129446	broad.mit.edu	37	2	168101234	168101234	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:168101234C>T	uc002udx.2	+	8	3350	c.3332C>T	c.(3331-3333)TCG>TTG	p.S1111L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S936L|XIRP2_uc010fpq.2_Missense_Mutation_p.S889L|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	936					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GAAAAAGTTTCGTTAATGACC	0.368													7	19					0	0	0.000157383	0	0
LRP2	4036	broad.mit.edu	37	2	170088331	170088331	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:170088331G>A	uc002ues.2	-	31	5333	c.5120C>T	c.(5119-5121)TCC>TTC	p.S1707F		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1707	EGF-like 7.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GCTGCAGCGGGAAAAGGCACA	0.473													12	17					0	0	0.000978159	0	0
TTN	7273	broad.mit.edu	37	2	179438423	179438423	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:179438423G>A	uc010zfg.1	-	275	64956	c.64732C>T	c.(64732-64734)CCT>TCT	p.P21578S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P15273S|TTN_uc010zfi.1_Missense_Mutation_p.P15206S|TTN_uc010zfj.1_Missense_Mutation_p.P15081S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22505							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCAGTGGAGGGAACCATGAT	0.438													17	103					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179474701	179474701	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:179474701G>A	uc010zfg.1	-	221	43969	c.43745C>T	c.(43744-43746)CCA>CTA	p.P14582L	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P8277L|TTN_uc010zfi.1_Missense_Mutation_p.P8210L|TTN_uc010zfj.1_Missense_Mutation_p.P8085L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15509							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTACAGGTGGATCAGGGGG	0.403													10	26					0	0	0.000673444	0	0
TTN	7273	broad.mit.edu	37	2	179481477	179481477	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:179481477C>T	uc010zfg.1	-	205	40659	c.40435G>A	c.(40435-40437)GAA>AAA	p.E13479K	TTN_uc010zfh.1_Missense_Mutation_p.E7174K|TTN_uc010zfi.1_Missense_Mutation_p.E7107K|TTN_uc010zfj.1_Missense_Mutation_p.E6982K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14406							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACATCAATTTCCCCAGAAATT	0.358													9	51					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179579889	179579889	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:179579889G>A	uc010zfg.1	-	87	22516	c.22292C>T	c.(22291-22293)TCT>TTT	p.S7431F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S4092F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8358							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTATACCAAGAAACGTGAAA	0.453													36	105					0	0	0.00111076	0	0
TTN	7273	broad.mit.edu	37	2	179584176	179584176	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:179584176G>A	uc010zfg.1	-	80	20433	c.20209C>T	c.(20209-20211)CGG>TGG	p.R6737W	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R3398W	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7664							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCACAATCCGATCTATGTGG	0.478													12	45					0	0	0.000978159	0	0
TTN	7273	broad.mit.edu	37	2	179584511	179584511	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:179584511C>T	uc010zfg.1	-	79	20200	c.19976G>A	c.(19975-19977)GGA>GAA	p.G6659E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G3320E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7586							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAAAGGATTTCCAGTAGTGAC	0.408													16	23					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179644729	179644729	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:179644729G>A	uc010zfg.1	-	22	3951	c.3727C>T	c.(3727-3729)CAG>TAG	p.Q1243*	TTN_uc010zfh.1_Nonsense_Mutation_p.Q1197*|TTN_uc010zfi.1_Nonsense_Mutation_p.Q1197*|TTN_uc010zfj.1_Nonsense_Mutation_p.Q1197*|TTN_uc002unb.2_Nonsense_Mutation_p.Q1243*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1243							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACTCACCTGATCTTCTACA	0.279													15	84					0	0	0.00074312	0	0
TTN	7273	broad.mit.edu	37	2	179647675	179647675	+	Silent	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:179647675G>C	uc010zfg.1	-	18	3182	c.2958C>G	c.(2956-2958)TCC>TCG	p.S986S	TTN_uc010zfh.1_Silent_p.S940S|TTN_uc010zfi.1_Silent_p.S940S|TTN_uc010zfj.1_Silent_p.S940S|TTN_uc002unb.2_Silent_p.S986S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	986							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAAGTCAATGGAACTTTCGA	0.478													4	76					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179666903	179666903	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:179666903G>C	uc002und.2	-	3	482	c.257C>G	c.(256-258)TCT>TGT	p.S86C	TTN_uc010zfg.1_Missense_Mutation_p.S86C|TTN_uc010zfh.1_Missense_Mutation_p.S86C|TTN_uc010zfi.1_Missense_Mutation_p.S86C|TTN_uc010zfj.1_Missense_Mutation_p.S86C|TTN_uc002unb.2_Missense_Mutation_p.S86C			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	86							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGCTTGTCCAGATCCATTGGT	0.557													8	100					0	0	0.000673444	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802432	185802432	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:185802432G>A	uc002uph.2	+	4	2903	c.2309G>A	c.(2308-2310)CGA>CAA	p.R770Q		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	770						intracellular	zinc ion binding	p.R770Q(1)		ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AGATTCTATCGAAAACGTAGA	0.333													22	77					0	0	0.000295444	0	0
COL3A1	1281	broad.mit.edu	37	2	189850505	189850505	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:189850505G>A	uc002uqj.1	+	4	564	c.447_splice	c.e4+1	p.Q149_splice		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein						axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TGGTCCTCAGGTATAACAATT	0.433													7	9					0	0	0.000157383	0	0
COL3A1	1281	broad.mit.edu	37	2	189868984	189868984	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:189868984G>A	uc002uqj.1	+	40	2942	c.2825G>A	c.(2824-2826)GGA>GAA	p.G942E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	942	Triple-helical region.		G -> E (in EDS4).		axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CTGTATTAGGGAGCTCCAGGC	0.458													7	20					0	0	0.000274275	0	0
HECW2	57520	broad.mit.edu	37	2	197189721	197189721	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:197189721G>A	uc002utm.1	-	6	907	c.724C>T	c.(724-726)CCA>TCA	p.P242S	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	242	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TGCCAAATTGGATTGGTGGTG	0.507													32	141					0	0	0.00128727	0	0
KCTD18	130535	broad.mit.edu	37	2	201371664	201371664	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:201371664G>A	uc002uvs.2	-	2	593	c.76C>T	c.(76-78)CGG>TGG	p.R26W	KCTD18_uc002uvt.2_Missense_Mutation_p.R26W|KCTD18_uc002uvu.1_Missense_Mutation_p.R26W	NM_152387	NP_689600	Q6PI47	KCD18_HUMAN	potassium channel tetramerization domain	26	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1						GACTCCCGCCGGGCTGTGTAA	0.498													25	24					0	0	0.000339439	0	0
ABCA12	26154	broad.mit.edu	37	2	215866398	215866398	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:215866398G>T	uc002vew.2	-	21	2967	c.2747C>A	c.(2746-2748)TCC>TAC	p.S916Y	ABCA12_uc002vev.2_Missense_Mutation_p.S598Y|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	916					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TACTGTCAGGGAAGATAGTGT	0.348													32	51					2.46105e-21	1.82665e-20	0.000339439	1	0
FN1	2335	broad.mit.edu	37	2	216249597	216249597	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:216249597G>C	uc002vfa.2	-	29	4981	c.4715C>G	c.(4714-4716)ACT>AGT	p.T1572S	FN1_uc002vfb.2_Missense_Mutation_p.T1481S|FN1_uc002vfc.2_Missense_Mutation_p.T1481S|FN1_uc002vfd.2_Missense_Mutation_p.T1572S|FN1_uc002vfe.2_Missense_Mutation_p.T1481S|FN1_uc002vff.2_Missense_Mutation_p.T1481S|FN1_uc002vfg.2_Missense_Mutation_p.T1481S|FN1_uc002vfh.2_Missense_Mutation_p.T1481S|FN1_uc002vfi.2_Missense_Mutation_p.T1572S|FN1_uc002vfj.2_Missense_Mutation_p.T1572S|FN1_uc002vez.2_5'UTR|FN1_uc010zjp.1_Missense_Mutation_p.T199S|FN1_uc010fvc.1_5'Flank|FN1_uc010fvd.1_5'Flank	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1575	Fibronectin type-III 11.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCTCCGTAAGTGATCCTGTA	0.458													4	66					0	0	0.000602214	0	0
ZNF142	7701	broad.mit.edu	37	2	219508822	219508822	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:219508822G>A	uc002vin.2	-	8	2853	c.2417C>T	c.(2416-2418)GCC>GTC	p.A806V	ZNF142_uc002vil.2_Missense_Mutation_p.A767V|ZNF142_uc010fvt.2_Missense_Mutation_p.A643V|ZNF142_uc002vim.2_Missense_Mutation_p.A643V	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	806					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		TCTCCTTAGGGCCTTGAGTAA	0.567													52	166					0	0	0.000781405	0	0
KIAA1486	57624	broad.mit.edu	37	2	226378250	226378250	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:226378250G>A	uc002voe.2	+	3	560	c.385G>A	c.(385-387)GAT>AAT	p.D129N	KIAA1486_uc010fxa.1_Intron	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	129										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GGGCACAGACGATGACAGCAG	0.572													8	31					0	0	0.000274275	0	0
COL4A4	1286	broad.mit.edu	37	2	227922198	227922198	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:227922198C>T	uc010zlt.1	-	29	3156	c.2502G>A	c.(2500-2502)GGG>GGA	p.G834G		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	834	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GCCCTGGTATCCCTGGAGCAC	0.468													8	13					0	0	0.000274275	0	0
COL4A4	1286	broad.mit.edu	37	2	227985809	227985809	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:227985809C>T	uc010zlt.1	-	5	902	c.248G>A	c.(247-249)GGA>GAA	p.G83E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	83	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCCAATGGGTCCTGGGGCTCC	0.542													19	28					0	0	0.000229342	0	0
ITM2C	81618	broad.mit.edu	37	2	231742169	231742169	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:231742169G>A	uc002vqz.2	+	5	736	c.616G>A	c.(616-618)GAG>AAG	p.E206K	ITM2C_uc002vra.2_Missense_Mutation_p.E159K|ITM2C_uc002vrb.2_Missense_Mutation_p.E169K|ITM2C_uc002vrc.2_Missense_Mutation_p.E95K|ITM2C_uc002vrd.2_Missense_Mutation_p.E58K	NM_030926	NP_112188	Q9NQX7	ITM2C_HUMAN	integral membrane protein 2C isoform 1	206	BRICHOS.				negative regulation of neuron projection development|neuron differentiation	Golgi apparatus|integral to membrane|lysosomal membrane|perinuclear region of cytoplasm	beta-amyloid binding				0		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;8.47e-12)|all cancers(144;3.44e-09)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		GGTGGTCACGGAGCATGTCAG	0.627													14	41					0	0	0.000219431	0	0
GIGYF2	26058	broad.mit.edu	37	2	233612407	233612407	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr2:233612407C>T	uc002vti.3	+	6	461	c.124C>T	c.(124-126)CGT>TGT	p.R42C	GIGYF2_uc010zmj.1_Missense_Mutation_p.R42C|GIGYF2_uc002vtg.2_Missense_Mutation_p.R42C|GIGYF2_uc002vtj.3_Missense_Mutation_p.R42C|GIGYF2_uc002vtk.3_Missense_Mutation_p.R42C|GIGYF2_uc002vth.3_Missense_Mutation_p.R42C|GIGYF2_uc010zmk.1_RNA	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	42					cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AGCAGATTATCGTTACGGCAG	0.398													36	83					0	0	0.00058488	0	0
DEFB128	245939	broad.mit.edu	37	20	168682	168682	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:168682C>T	uc002wcz.1	-	2	127	c.127G>A	c.(127-129)GAA>AAA	p.E43K		NM_001037732	NP_001032821	Q7Z7B8	DB128_HUMAN	beta-defensin 128 precursor	43					defense response to bacterium	extracellular region				breast(1)	1		all_cancers(10;0.00499)|Lung NSC(37;0.227)	OV - Ovarian serous cystadenocarcinoma(29;0.122)			CATCCTATTTCATATCTTTCT	0.373													14	93					0	0	0.000566183	0	0
SLC4A11	83959	broad.mit.edu	37	20	3210286	3210286	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:3210286G>A	uc002wig.2	-	13	1722	c.1674C>T	c.(1672-1674)GCC>GCT	p.A558A	SLC4A11_uc010zqe.1_Silent_p.A585A|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.A542A	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	558	Extracellular (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						CCGTGGGGCTGGCGAGGAAGC	0.647													14	35					0	0	0.000219431	0	0
PLCB4	5332	broad.mit.edu	37	20	9391708	9391708	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:9391708G>A	uc002wnf.2	+	23	2124	c.1988G>A	c.(1987-1989)GGA>GAA	p.G663E	PLCB4_uc010gbw.1_Missense_Mutation_p.G663E|PLCB4_uc010gbx.2_Missense_Mutation_p.G675E|PLCB4_uc002wne.2_Missense_Mutation_p.G663E|PLCB4_uc002wnh.2_Missense_Mutation_p.G510E	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	663	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTGAATCAGGGAAAATTTGAG	0.368													12	45					0	0	0.000219431	0	0
C20orf26	26074	broad.mit.edu	37	20	20340918	20340918	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:20340918C>G	uc002wru.2	+	27	3654	c.3578C>G	c.(3577-3579)ACT>AGT	p.T1193S	C20orf26_uc002wrw.2_RNA	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	1193										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		ATCAACCCGACTGAGAAGCCC	0.438											OREG0025807	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	165					0	0	0.00024832	0	0
CST1	1469	broad.mit.edu	37	20	23729711	23729711	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:23729711G>A	uc002wtp.2	-	2	355	c.284C>T	c.(283-285)ACC>ATC	p.T95I		NM_001898	NP_001889	P01037	CYTN_HUMAN	cystatin SN precursor	95						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Lung NSC(19;0.0676)|all_lung(19;0.148)					CTGGGACTTGGTACATATGGT	0.567													26	91					0	0	0.00058488	0	0
CST1	1469	broad.mit.edu	37	20	23731457	23731457	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:23731457G>A	uc002wtp.2	-	1	118	c.47C>T	c.(46-48)GCT>GTT	p.A16V		NM_001898	NP_001889	P01037	CYTN_HUMAN	cystatin SN precursor	16						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Lung NSC(19;0.0676)|all_lung(19;0.148)					CAGGGCCACAGCTAGGGTGGC	0.597													5	14					0	0	0.000602214	0	0
TMEM90B	79953	broad.mit.edu	37	20	24565507	24565507	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:24565507G>A	uc002wtw.1	+	3	1129	c.496G>A	c.(496-498)GAC>AAC	p.D166N		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	166	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CTACTCAAGCGACACAGAGAG	0.567													26	65					0	0	0.000720815	0	0
MYLK2	85366	broad.mit.edu	37	20	30408279	30408279	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:30408279G>A	uc002wwq.2	+	3	505	c.403G>A	c.(403-405)GGC>AGC	p.G135S		NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	135					cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GGCAGCAGAGGGCCAAGCAGC	0.632													11	44					0	0	0.000978159	0	0
PTPRT	11122	broad.mit.edu	37	20	41306677	41306677	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:41306677G>A	uc002xkg.2	-	7	1166	c.982C>T	c.(982-984)CGC>TGC	p.R328C	PTPRT_uc010ggj.2_Missense_Mutation_p.R328C	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	328	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTGGTGGTGCGATATTCCACT	0.562													17	46					0	0	0.000958276	0	0
SEMG2	6407	broad.mit.edu	37	20	43851116	43851116	+	Silent	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:43851116G>C	uc010ggz.2	+	2	900	c.843G>C	c.(841-843)CGG>CGC	p.R281R	SEMG2_uc002xnk.2_Silent_p.R281R|SEMG2_uc002xnl.2_Silent_p.R281R	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	281	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				AGCATGGCCGGAAGGCACATA	0.398													15	38					0	0	0.000422831	0	0
SALL4	57167	broad.mit.edu	37	20	50400964	50400964	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:50400964G>A	uc002xwh.3	-	4	3103	c.3002C>T	c.(3001-3003)TCC>TTC	p.S1001F	SALL4_uc010gii.2_Missense_Mutation_p.S564F|SALL4_uc002xwi.3_Missense_Mutation_p.S224F	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	1001					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGCCCCCAAGGAAACCGGGAG	0.557													12	43					0	0	0.000219431	0	0
SALL4	57167	broad.mit.edu	37	20	50408030	50408030	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:50408030G>A	uc002xwh.3	-	2	1093	c.992C>T	c.(991-993)CCG>CTG	p.P331L	SALL4_uc010gii.2_Missense_Mutation_p.P331L|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	331					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CAAAGCGCTCGGGAGGCGGGA	0.642													6	25					0	0	8.12818e-05	0	0
CYP24A1	1591	broad.mit.edu	37	20	52774016	52774016	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:52774016G>A	uc002xwv.2	-	10	1743	c.1345C>T	c.(1345-1347)CCT>TCT	p.P449S	CYP24A1_uc002xwu.1_Missense_Mutation_p.P307S|CYP24A1_uc002xww.2_Intron	NM_000782	NP_000773	Q07973	CP24A_HUMAN	cytochrome P450 family 24 subfamily A	449					hormone biosynthetic process|osteoblast differentiation|vitamin D catabolic process|vitamin D receptor signaling pathway|xenobiotic metabolic process	mitochondrial inner membrane	1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity|electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		STAD - Stomach adenocarcinoma(23;0.206)		Calcidiol(DB00146)|Calcitriol(DB00136)|Cholecalciferol(DB00169)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	TGCGCAAAAGGATTAATTTTT	0.418													19	54					0	0	0.00121646	0	0
GNAS	2778	broad.mit.edu	37	20	57429122	57429122	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:57429122C>T	uc002xzw.2	+	1	1087	c.802C>T	c.(802-804)CCC>TCC	p.P268S	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CCGCCTCACTCCCGCCGCGAA	0.692			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			5	14					0	0	0.000602214	0	0
CDH26	60437	broad.mit.edu	37	20	58562670	58562670	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:58562670G>A	uc002ybe.2	+	8	1300	c.1000G>A	c.(1000-1002)GAA>AAA	p.E334K	CDH26_uc002ybf.1_5'Flank|CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	334	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			TGAGACCAACGAAGGGATATT	0.438													7	42					0	0	0.000442599	0	0
C20orf11	54994	broad.mit.edu	37	20	61574343	61574343	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:61574343C>T	uc002ydy.2	+	3	300	c.123C>T	c.(121-123)GGC>GGT	p.G41G		NM_017896	NP_060366	Q9NWU2	CT011_HUMAN	chromosome 20 open reading frame 11	41	LisH.					nucleus	protein binding				0	Breast(26;5.68e-08)					ATTCAGAGGGCTTTAAGGAAG	0.408													19	52					0	0	0.00121646	0	0
TPD52L2	7165	broad.mit.edu	37	20	62500746	62500746	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:62500746G>T	uc002yhc.2	+	2	246	c.117G>T	c.(115-117)GAG>GAT	p.E39D	TPD52L2_uc002ygy.2_Missense_Mutation_p.E39D|TPD52L2_uc002ygz.2_Missense_Mutation_p.E39D|TPD52L2_uc002yha.2_Missense_Mutation_p.E39D|TPD52L2_uc002yhb.2_Missense_Mutation_p.E39D|TPD52L2_uc002yhd.2_Missense_Mutation_p.E39D|TPD52L2_uc011abk.1_Intron|TPD52L2_uc011abl.1_Missense_Mutation_p.E16D	NM_003288	NP_003279	O43399	TPD54_HUMAN	tumor protein D52-like 2 isoform e	39	Potential.				regulation of cell proliferation	perinuclear region of cytoplasm	protein binding|protein homodimerization activity			ovary(1)|skin(1)	2	all_cancers(38;1.3e-12)|all_epithelial(29;2.23e-14)|Lung NSC(23;5.92e-10)|all_lung(23;2.08e-09)					CTGCTGTTGAGGGTCTGACAG	0.552													7	76					8.12818e-05	0.000593194	8.12818e-05	1	0
NPBWR2	2832	broad.mit.edu	37	20	62737564	62737564	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:62737564G>A	uc011abt.1	-	1	621	c.621C>T	c.(619-621)GTC>GTT	p.V207V		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	207	Extracellular (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					CCTTGAACCAGACCTGCTCGG	0.627													7	40					0	0	0.000157383	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737736	62737737	+	Nonsense_Mutation	DNP	AC	TA	TA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr20:62737736_62737737AC>TA	uc011abt.1	-	1	448_449	c.448_449GT>TA	c.(448-450)GTG>TAG	p.V150*		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	150	Cytoplasmic (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					GCGGGACCTCACGGTGGCCAGC	0.634													7	16					0	0	6.4e-05	0	0
TPTE	7179	broad.mit.edu	37	21	10933874	10933874	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr21:10933874C>T	uc002yip.1	-	17	1373	c.1005G>A	c.(1003-1005)GCG>GCA	p.A335A	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.A317A|TPTE_uc002yir.1_Silent_p.A297A|TPTE_uc010gkv.1_Silent_p.A197A	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	335	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TACAGTGAATCGCTACGATGT	0.318													26	378					0	0	0.00106085	0	0
SYNJ1	8867	broad.mit.edu	37	21	34045783	34045783	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr21:34045783C>T	uc002yqh.2	-	14	1710	c.1710G>A	c.(1708-1710)AAG>AAA	p.K570K	SYNJ1_uc011ads.1_Silent_p.K526K|SYNJ1_uc002yqf.2_Silent_p.K531K|SYNJ1_uc002yqg.2_Silent_p.K526K|SYNJ1_uc002yqi.2_Silent_p.K570K	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	531	Catalytic (Potential).						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						CTCGAATTTTCTTAGGCTTTG	0.378													11	13					0	0	0.000673444	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43800282	43800282	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr21:43800282T>C	uc002zbb.2	-	10	1193	c.992A>G	c.(991-993)AAC>AGC	p.N331S	TMPRSS3_uc002zay.2_Missense_Mutation_p.N89S|TMPRSS3_uc002zaz.2_Missense_Mutation_p.N204S|TMPRSS3_uc002zba.2_Missense_Mutation_p.N204S|TMPRSS3_uc002zbc.2_Missense_Mutation_p.N331S	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	331	Peptidase S1.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						ATCGGGGAAGTTCTCTTCAGA	0.522													12	18					0	0	0.000308642	0	0
KRTAP10-9	386676	broad.mit.edu	37	21	46047223	46047223	+	Silent	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr21:46047223G>C	uc002zfp.3	+	1	184	c.135G>C	c.(133-135)CTG>CTC	p.L45L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	45	25 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCCTGACCCTGGTCTGCACCC	0.692													3	53					0	0	6.4e-05	0	0
PEX26	55670	broad.mit.edu	37	22	18567993	18567993	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:18567993C>T	uc002znp.3	+	5	992	c.783C>T	c.(781-783)ATC>ATT	p.I261I	TUBA8_uc002znr.2_Intron|PEX26_uc002znq.3_Silent_p.I261I|PEX26_uc002znt.2_Intron	NM_017929	NP_060399	Q7Z412	PEX26_HUMAN	peroxisome biogenesis factor 26	261	Helical; Signal-anchor for type II membrane protein; (Potential).				protein import into peroxisome matrix|protein import into peroxisome membrane	integral to peroxisomal membrane	protein C-terminus binding|protein complex binding			skin(1)	1						CTGCCTTGATCCTCTGTCTCC	0.557													30	90					0	0	0.000491102	0	0
DGCR2	9993	broad.mit.edu	37	22	19035969	19035969	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:19035969G>A	uc002zoq.1	-	7	1238	c.990C>T	c.(988-990)TTC>TTT	p.F330F	DGCR2_uc002zor.1_Silent_p.F106F|DGCR2_uc011agr.1_Silent_p.F286F|DGCR11_uc002zos.2_5'Flank	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	330	Extracellular (Potential).|VWFC.				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					CCAGACACATGAACTTGCAGC	0.597													40	113					0	0	0.00170553	0	0
CLTCL1	8218	broad.mit.edu	37	22	19195804	19195804	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:19195804C>G	uc002zpb.2	-	22	3535	c.3460G>C	c.(3460-3462)GTT>CTT	p.V1154L	CLTCL1_uc011agv.1_Missense_Mutation_p.V1154L|CLTCL1_uc011agw.1_Missense_Mutation_p.V1154L|CLTCL1_uc011agt.1_5'Flank|CLTCL1_uc011agu.1_5'Flank|CLTCL1_uc010grm.1_Intron|CLTCL1_uc002zpe.2_Missense_Mutation_p.V114L|CLTCL1_uc002zpd.1_Intron	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1154	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					AGAAATTTAACTAGATCCTCC	0.423			T	?	ALCL								20	91					0	0	0.000295444	0	0
LOC96610	96610	broad.mit.edu	37	22	22673458	22673458	+	RNA	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:22673458C>T	uc011aim.1	+	33		c.2537C>T			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						TCTGGAGTTCCCAGCCGCTTC	0.537													27	62					0	0	0.000878237	0	0
PRAME	23532	broad.mit.edu	37	22	22890787	22890787	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:22890787A>G	uc002zwf.2	-	5	1388	c.1232T>C	c.(1231-1233)TTA>TCA	p.L411S	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.L395S|PRAME_uc010gtr.2_Missense_Mutation_p.L411S|PRAME_uc002zwg.2_Missense_Mutation_p.L411S|PRAME_uc002zwh.2_Missense_Mutation_p.L411S|PRAME_uc002zwi.2_Missense_Mutation_p.L411S|PRAME_uc002zwj.2_Missense_Mutation_p.L411S|PRAME_uc002zwk.2_Missense_Mutation_p.L411S	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	411	LRR 4.				apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		GTAGAAGCTTAAGGTTGTAAG	0.567													19	63					0	0	0.000958276	0	0
GAS2L1	10634	broad.mit.edu	37	22	29708093	29708093	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:29708093C>T	uc003afa.1	+	7	1852	c.1653C>T	c.(1651-1653)CCC>CCT	p.P551P	GAS2L1_uc010gvm.1_Intron|GAS2L1_uc003afb.1_3'UTR|GAS2L1_uc003afc.1_Silent_p.P551P|GAS2L1_uc003afd.1_3'UTR|GAS2L1_uc003afe.1_3'UTR	NM_152236	NP_689422	Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1 isoform a	551					cell cycle arrest	cytoplasm|cytoskeleton					0						CTCGGGCCCCCGACCCTCCAG	0.657													64	109					0	0	0.000781405	0	0
GATSL3	652968	broad.mit.edu	37	22	30683225	30683225	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:30683225C>T	uc003ahd.2	-	4	554	c.424G>A	c.(424-426)GAC>AAC	p.D142N	GATSL3_uc003ahc.2_Missense_Mutation_p.D142N|GATSL3_uc003ahe.2_Missense_Mutation_p.D142N|GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Missense_Mutation_p.D315N|GATSL3_uc010gvr.2_Missense_Mutation_p.D29N|GATSL3_uc010gvs.2_Missense_Mutation_p.D29N	NM_001037666	NP_001032755	Q8WTX7	GATL3_HUMAN	GATS protein-like 3	142										breast(1)	1						CGGTAAATGTCGAACTCCTGG	0.627											OREG0026457	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	30					0	0	0.000442599	0	0
SYN3	8224	broad.mit.edu	37	22	33265107	33265107	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:33265107G>A	uc003amx.2	-	4	626	c.467C>T	c.(466-468)TCC>TTC	p.S156F	SYN3_uc003amy.2_Missense_Mutation_p.S156F|SYN3_uc003amz.2_Missense_Mutation_p.S155F	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	156	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						TGGCTTGAAGGATCTGCTGAG	0.577													10	30					0	0	0.000978159	0	0
MYH9	4627	broad.mit.edu	37	22	36737465	36737465	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:36737465G>A	uc003apg.2	-	3	671	c.440C>T	c.(439-441)CCC>CTC	p.P147L	MYH9_uc003aph.1_Missense_Mutation_p.P11L|MYH9_uc003api.1_Missense_Mutation_p.P147L	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	147	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GATGTGAGGGGGCATCTCGTG	0.532			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				16	124					0	0	0.000422831	0	0
CACNG2	10369	broad.mit.edu	37	22	37098496	37098496	+	Silent	SNP	G	A	A	rs147878619		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:37098496G>A	uc003aps.1	-	1	408	c.126C>T	c.(124-126)ACC>ACT	p.T42T	uc003apt.1_5'Flank	NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	42					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						TGACACTTTTGGTCTTGCAAA	0.463													42	245					0	0	0.000589545	0	0
CYTH4	27128	broad.mit.edu	37	22	37688692	37688692	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:37688692A>G	uc003arf.2	+	2	166	c.50A>G	c.(49-51)GAA>GGA	p.E17G	CYTH4_uc003ard.3_Missense_Mutation_p.E17G|CYTH4_uc003are.2_Missense_Mutation_p.E17G|CYTH4_uc011amw.1_5'UTR|CYTH4_uc010gxe.2_RNA	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	17	Potential.				regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GGGGAGACGGAAGAGTTACAG	0.542													48	75					0	0	0.000781405	0	0
TMEM184B	25829	broad.mit.edu	37	22	38621498	38621498	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:38621498G>A	uc003avf.1	-	7	944	c.720C>T	c.(718-720)CTC>CTT	p.L240L	TMEM184B_uc003avg.1_Silent_p.L240L|TMEM184B_uc003avh.1_Silent_p.L174L|TMEM184B_uc010gxl.1_RNA	NM_012264	NP_036396	Q9Y519	T184B_HUMAN	transmembrane protein 184B	240						integral to membrane					0	Melanoma(58;0.045)					TGTAGGGGCTGAGCAGCTCCC	0.587													26	70					0	0	0.00106085	0	0
EP300	2033	broad.mit.edu	37	22	41537116	41537116	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr22:41537116G>T	uc003azl.3	+	10	2338	c.1943G>T	c.(1942-1944)CGA>CTA	p.R648L		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	648					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GAAGAAAAACGAAGGACCAGA	0.443			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				5	125					0.000602214	0.00435606	0.000602214	1	0
SRGAP3	9901	broad.mit.edu	37	3	9166442	9166442	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:9166442G>A	uc003brf.1	-	2	903	c.227C>T	c.(226-228)TCC>TTC	p.S76F	SRGAP3_uc003brg.1_Missense_Mutation_p.S76F|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brk.2_Missense_Mutation_p.S76F	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	76	FCH.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GCGGATTTTGGAGGAGAAGCG	0.587			T	RAF1	pilocytic astrocytoma								17	67					0	0	0.00121646	0	0
PRRT3	285368	broad.mit.edu	37	3	9991023	9991023	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:9991023C>T	uc003bul.2	-	2	907	c.777G>A	c.(775-777)GAG>GAA	p.E259E	CIDEC_uc003bto.2_Intron|PRRT3_uc003buk.2_RNA|PRRT3_uc003bum.2_Silent_p.E259E	NM_207351	NP_997234	Q5FWE3	PRRT3_HUMAN	proline-rich transmembrane protein 3 precursor	259	Extracellular (Potential).|Pro-rich.					integral to membrane					0						AGTACACCACCTCAACTGGGG	0.617													12	56					0	0	0.000422831	0	0
WNT7A	7476	broad.mit.edu	37	3	13860507	13860507	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:13860507G>A	uc003bye.1	-	4	1289	c.984C>T	c.(982-984)TTC>TTT	p.F328F		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	328					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						AGCACCAGTGGAACTTACAGT	0.617													7	22					0	0	8.12818e-05	0	0
LSM3	27258	broad.mit.edu	37	3	14239577	14239577	+	Silent	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:14239577T>C	uc003byn.2	+	4	299	c.270T>C	c.(268-270)GAT>GAC	p.D90D	uc003byo.1_5'Flank	NM_014463	NP_055278	P62310	LSM3_HUMAN	Lsm3 protein	90					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	catalytic step 2 spliceosome|cytosol	protein binding|RNA binding			ovary(1)	1						TCCGGGGAGATGGCGTTGTCC	0.413													25	60					0	0	0.00106085	0	0
BTD	686	broad.mit.edu	37	3	15686538	15686538	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:15686538C>T	uc003cah.2	+	4	1278	c.1175C>T	c.(1174-1176)CCC>CTC	p.P392L	BTD_uc011avv.1_Missense_Mutation_p.P394L|BTD_uc011avw.1_Missense_Mutation_p.P394L|BTD_uc011avx.1_Missense_Mutation_p.P372L	NM_000060	NP_000051	P43251	BTD_HUMAN	biotinidase precursor	392					central nervous system development|epidermis development|nitrogen compound metabolic process	extracellular space	biotin carboxylase activity|biotinidase activity				0						AATGCTCCTCCCACATTTCAC	0.473													32	119					0	0	0.000339439	0	0
EFHB	151651	broad.mit.edu	37	3	19956845	19956845	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:19956845C>T	uc003cbl.3	-	5	1434	c.1238G>A	c.(1237-1239)GGA>GAA	p.G413E	EFHB_uc003cbm.2_Missense_Mutation_p.G283E	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	413					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						TCCTTCATTTCCTTCTTTAAA	0.368													19	64					0	0	0.000375601	0	0
ZCWPW2	152098	broad.mit.edu	37	3	28454676	28454676	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:28454676G>A	uc003ceh.2	+	3	285	c.117G>A	c.(115-117)TTG>TTA	p.L39L	ZCWPW2_uc003cei.2_Silent_p.L39L	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	39	CW-type.						zinc ion binding			ovary(2)	2						AAAATTGTTTGAAATGGAGAT	0.348													10	31					0	0	0.000442599	0	0
TRANK1	9881	broad.mit.edu	37	3	36897057	36897057	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:36897057C>T	uc003cgj.2	-	3	2676	c.2374G>A	c.(2374-2376)GAA>AAA	p.E792K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1342					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTCCGGTCTTCCTTGAAATTG	0.448													34	100					0	0	0.00058488	0	0
SCN5A	6331	broad.mit.edu	37	3	38674787	38674787	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:38674787G>A	uc003cio.2	-	2	206	c.12C>T	c.(10-12)TTC>TTT	p.F4F	SCN5A_uc003cin.2_Silent_p.F4F|SCN5A_uc003cil.3_Silent_p.F4F|SCN5A_uc010hhi.2_Silent_p.F4F|SCN5A_uc010hhk.2_Silent_p.F4F|SCN5A_uc011ayr.1_Silent_p.F4F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	4					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GAGGTAATAGGAAGTTTGCCA	0.587													13	36					0	0	0.000308642	0	0
TTC21A	199223	broad.mit.edu	37	3	39150695	39150695	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:39150695C>T	uc003cjc.2	+	2	324	c.147C>T	c.(145-147)GTC>GTT	p.V49V	GORASP1_uc003civ.1_5'Flank|GORASP1_uc003ciw.1_5'Flank|GORASP1_uc003cix.1_5'Flank|GORASP1_uc003ciy.1_5'Flank|GORASP1_uc011ayw.1_5'Flank|GORASP1_uc003ciz.1_5'Flank|TTC21A_uc003cja.2_Silent_p.V49V|TTC21A_uc010hho.1_Silent_p.V49V|TTC21A_uc003cjb.2_Silent_p.V49V|TTC21A_uc003cje.2_Silent_p.V49V|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Silent_p.V49V	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	49							binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		CCTATGGAGTCCTCAAAGAAG	0.517													14	40					0	0	0.000151284	0	0
ENTPD3	956	broad.mit.edu	37	3	40457369	40457369	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:40457369G>A	uc003ckd.3	+	7	728	c.636G>A	c.(634-636)GTG>GTA	p.V212V	ENTPD3_uc010hhy.2_Silent_p.V212V|uc003cke.3_Intron	NM_001248	NP_001239	O75355	ENTP3_HUMAN	ectonucleoside triphosphate diphosphohydrolase	212	Extracellular (Potential).					integral to membrane	ATP binding|hydrolase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0605)|Kidney(284;0.0758)		CGCATGGAGTGGAAACCACGG	0.542													8	38					0	0	0.000157383	0	0
CCR1	1230	broad.mit.edu	37	3	46245360	46245360	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:46245360A>T	uc003cph.1	-	2	516	c.445T>A	c.(445-447)TTT>ATT	p.F149I	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	149	Helical; Name=4; (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		ATGACACCAAAAGTGACGGTC	0.527													10	44					0	0	0.000673444	0	0
LTF	4057	broad.mit.edu	37	3	46490500	46490500	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:46490500C>T	uc003cpq.2	-	9	1104	c.1066G>A	c.(1066-1068)GAA>AAA	p.E356K	LTF_uc003fzr.2_Missense_Mutation_p.E312K|LTF_uc010hjh.2_Missense_Mutation_p.E356K|LTF_uc003cpr.2_Missense_Mutation_p.E343K	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	356					cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	GCAGCCACTTCCTCCTCACCT	0.662													6	25					0	0	8.12818e-05	0	0
PTH1R	5745	broad.mit.edu	37	3	46939926	46939926	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:46939926C>T	uc003cqm.2	+	8	805	c.602C>T	c.(601-603)TCC>TTC	p.S201F	PTH1R_uc003cqn.2_Missense_Mutation_p.S201F	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	201	Helical; Name=1; (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						TCCCTGGCGTCCCTCACCGTA	0.483									Ollier_disease_/_Maffuci_syndrome				13	40					0	0	0.000422831	0	0
LAMB2	3913	broad.mit.edu	37	3	49167662	49167662	+	Splice_Site	SNP	A	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:49167662A>C	uc003cwe.2	-	9	1524	c.1225_splice	c.e9+1	p.S409_splice	LAMB2_uc003cwf.1_Splice_Site_p.S409_splice	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor						cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TCCCAGCCTCACAGCGGCACA	0.592													10	22					0	0	0.000442599	0	0
RBM6	10180	broad.mit.edu	37	3	50114528	50114528	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:50114528C>T	uc003cyc.2	+	21	3467	c.3334C>T	c.(3334-3336)CGA>TGA	p.R1112*	RBM6_uc003cyd.2_Nonsense_Mutation_p.R590*|RBM6_uc003cye.2_Nonsense_Mutation_p.R590*|RBM6_uc011bdi.1_Nonsense_Mutation_p.R454*|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	1112					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		AGATGCTGTTCGAAGAGTCAT	0.463													14	42					0	0	0.000422831	0	0
DOCK3	1795	broad.mit.edu	37	3	51264789	51264789	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:51264789C>T	uc011bds.1	+	16	1476	c.1453C>T	c.(1453-1455)CCT>TCT	p.P485S		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	485	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAGTAATAGTCCTCGCTGGGG	0.468													26	98					0	0	0.000720815	0	0
NISCH	11188	broad.mit.edu	37	3	52506374	52506374	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:52506374C>T	uc011beg.1	+	7	701	c.629C>T	c.(628-630)CCG>CTG	p.P210L	NISCH_uc003ded.3_Missense_Mutation_p.P210L|NISCH_uc003dec.1_Missense_Mutation_p.P210L	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	210	Necessary for homooligomerization and targeting to endosomes.				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CAGCTCCTGCCGTTCGACCTA	0.527											OREG0015615	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	88					0	0	0.000692331	0	0
SFMBT1	51460	broad.mit.edu	37	3	52941212	52941212	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:52941212T>C	uc003dgf.2	-	20	2773	c.2204A>G	c.(2203-2205)AAG>AGG	p.K735R	SFMBT1_uc010hmr.2_Missense_Mutation_p.K682R|SFMBT1_uc003dgg.2_Missense_Mutation_p.K735R|SFMBT1_uc003dgh.2_Missense_Mutation_p.K735R	NM_001005159	NP_001005159	Q9UHJ3	SMBT1_HUMAN	Scm-like with four mbt domains 1	735					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.91e-05)|Kidney(197;0.000644)|KIRC - Kidney renal clear cell carcinoma(197;0.000792)|OV - Ovarian serous cystadenocarcinoma(275;0.113)		GGAGCATGACTTTTTTTCTGA	0.468													34	110					0	0	0.000953801	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54930827	54930827	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:54930827C>T	uc003dhf.2	+	26	2346	c.2298C>T	c.(2296-2298)TTC>TTT	p.F766F	CACNA2D3_uc003dhg.1_Silent_p.F672F|CACNA2D3_uc003dhh.1_RNA|uc003dhk.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	766	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CAGACCATTTCCCTCTCTGGT	0.512													33	75					0	0	0.000491102	0	0
ERC2	26059	broad.mit.edu	37	3	56330089	56330089	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:56330089C>T	uc003dhr.1	-	3	1288	c.1032G>A	c.(1030-1032)GTG>GTA	p.V344V		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	344	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GATCTAAAATCACTTCCAAGT	0.428													32	84					0	0	0.001512	0	0
FLNB	2317	broad.mit.edu	37	3	58135710	58135710	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:58135710C>T	uc003djj.2	+	37	6390	c.6225C>T	c.(6223-6225)TTC>TTT	p.F2075F	FLNB_uc010hne.2_Silent_p.F2106F|FLNB_uc003djk.2_Silent_p.F2064F|FLNB_uc010hnf.2_Silent_p.F2051F|FLNB_uc003djl.2_Silent_p.F1895F|FLNB_uc003djm.2_Silent_p.F1882F|FLNB_uc010hng.1_RNA	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2075	Interaction with FLNA 1.|Filamin 19.|Interaction with the cytoplasmic tail of GP1BA.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCACCAAATTCGCTGACGAGC	0.552													35	129					0	0	0.00170553	0	0
ATXN7	6314	broad.mit.edu	37	3	63973764	63973764	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:63973764C>T	uc003dlw.3	+	9	1678	c.1125C>T	c.(1123-1125)GTC>GTT	p.V375V	ATXN7_uc003dlv.2_Silent_p.V375V|ATXN7_uc010hnv.2_Silent_p.V375V|ATXN7_uc011bfn.1_Silent_p.V230V	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	375	SCA7.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		GCAGGGCTGTCCAGGGTAGAA	0.433													34	129					0	0	0.000814825	0	0
ROBO1	6091	broad.mit.edu	37	3	78676597	78676597	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:78676597G>A	uc003dqe.2	-	26	3957	c.3749C>T	c.(3748-3750)CCA>CTA	p.P1250L	ROBO1_uc003dqb.2_Missense_Mutation_p.P1211L|ROBO1_uc003dqc.2_Missense_Mutation_p.P1150L|ROBO1_uc003dqd.2_Missense_Mutation_p.P1205L|ROBO1_uc010hoh.2_Missense_Mutation_p.P442L|ROBO1_uc011bgl.1_Missense_Mutation_p.P822L	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1250	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		CACGGCAGCTGGAGAAGAAGC	0.557													7	11					0	0	0.000157383	0	0
TMEM45A	55076	broad.mit.edu	37	3	100295801	100295801	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:100295801C>T	uc003dtz.1	+	6	1080	c.767C>T	c.(766-768)TCC>TTC	p.S256F	TMEM45A_uc003dua.1_Missense_Mutation_p.S272F|TMEM45A_uc003dub.1_RNA	NM_018004	NP_060474	Q9NWC5	TM45A_HUMAN	transmembrane protein 45A	256						integral to membrane				skin(2)|ovary(1)	3						AGGCTCTGCTCCTCAGAAGTT	0.383													26	77					0	0	0.00106085	0	0
ABI3BP	25890	broad.mit.edu	37	3	100621520	100621520	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:100621520C>T	uc003dun.2	-	3	376	c.291G>A	c.(289-291)CCG>CCA	p.P97P	ABI3BP_uc003duo.2_Silent_p.P90P|ABI3BP_uc003dup.3_Silent_p.P90P	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	97						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						TCAGATATTTCGGCTCTGCAT	0.418													11	30					0	0	0.00136819	0	0
IMPG2	50939	broad.mit.edu	37	3	100963530	100963530	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:100963530C>T	uc003duq.1	-	13	1848	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	IMPG2_uc011bhe.1_Missense_Mutation_p.E412K	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	549	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						TCAGAGTCTTCCATGGATGGT	0.383													14	53					0	0	0.000151284	0	0
ZPLD1	131368	broad.mit.edu	37	3	102171806	102171806	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:102171806G>A	uc003dvs.1	+	10	1032	c.150G>A	c.(148-150)ACG>ACA	p.T50T	ZPLD1_uc003dvt.1_Silent_p.T66T|ZPLD1_uc011bhg.1_Silent_p.T50T	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	50	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						AGGCTATTACGATGAAGATTA	0.383													17	46					0	0	0.000958276	0	0
CBLB	868	broad.mit.edu	37	3	105422976	105422976	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:105422976G>A	uc003dwc.2	-	11	1771	c.1449C>T	c.(1447-1449)TCC>TCT	p.S483S	CBLB_uc011bhi.1_Silent_p.S505S|CBLB_uc003dwd.1_Silent_p.S483S|CBLB_uc003dwe.1_Silent_p.S483S	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	483	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						CAAGGGGAGAGGATCCTGGTG	0.517			Mis S		AML								22	91					0	0	0.00127121	0	0
BBX	56987	broad.mit.edu	37	3	107491930	107491930	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:107491930G>A	uc010hpr.2	+	11	1689	c.1362G>A	c.(1360-1362)AAG>AAA	p.K454K	BBX_uc003dwk.3_Silent_p.K454K|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Silent_p.K475K|BBX_uc003dwm.3_Silent_p.K454K|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	454	Lys-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			AAAAGAAAAAGAAGAAAAGCA	0.393													13	51					0	0	0.000151284	0	0
SIDT1	54847	broad.mit.edu	37	3	113327014	113327014	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:113327014C>T	uc003eak.2	+	16	2203	c.1552C>T	c.(1552-1554)CGC>TGC	p.R518C	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.R518C|SIDT1_uc011big.1_Missense_Mutation_p.R271C|SIDT1_uc011bih.1_RNA|SIDT1_uc011bii.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	518	Cytoplasmic (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						AGTCTTGCGCCGCGACATCCT	0.537													7	99					0	0	0.000157383	0	0
B4GALT4	8702	broad.mit.edu	37	3	118935088	118935088	+	Missense_Mutation	SNP	G	A	A	rs145839681		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:118935088G>A	uc003ecg.2	-	7	1542	c.901C>T	c.(901-903)CGG>TGG	p.R301W	B4GALT4_uc003ece.1_Missense_Mutation_p.R301W|B4GALT4_uc003ecf.2_RNA|B4GALT4_uc003ech.2_Missense_Mutation_p.R301W|B4GALT4_uc003eci.2_Missense_Mutation_p.R301W|B4GALT4_uc011biy.1_RNA	NM_212543	NP_997708	O60513	B4GT4_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	301	Lumenal (Potential).				membrane lipid metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding|N-acetyllactosamine synthase activity				0				GBM - Glioblastoma multiforme(114;0.222)	N-Acetyl-D-glucosamine(DB00141)	AGGACTTACCGTTCTGCGTTC	0.468													21	50					0	0	0.00152264	0	0
ADPRH	141	broad.mit.edu	37	3	119306413	119306413	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:119306413G>A	uc003ecs.2	+	5	1060	c.762G>A	c.(760-762)AGG>AGA	p.R254R	ADPRH_uc010hqv.2_Silent_p.R254R|ADPRH_uc011bjb.1_Silent_p.R147R|ADPRH_uc003ect.2_Silent_p.R254R	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	254					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		TGAAGGAGAGGGATCAGTTCT	0.517													15	40					0	0	0.000219431	0	0
STXBP5L	9515	broad.mit.edu	37	3	121137202	121137202	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:121137202G>A	uc003eec.3	+	27	3457	c.3317G>A	c.(3316-3318)GGA>GAA	p.G1106E	STXBP5L_uc011bji.1_Missense_Mutation_p.G1082E	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	1106					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GCTTCGGCAGGAAAAGCATCC	0.473													10	20					0	0	0.000673444	0	0
SLC15A2	6565	broad.mit.edu	37	3	121616254	121616254	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:121616254C>T	uc003eep.2	+	3	366	c.213C>T	c.(211-213)TTC>TTT	p.F71F	SLC15A2_uc011bjn.1_Silent_p.F71F	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	71	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TCCTGTATTTCCTGTATTTCC	0.418													35	113					0	0	0.00148497	0	0
SEMA5B	54437	broad.mit.edu	37	3	122645383	122645383	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:122645383A>C	uc003efz.1	-	9	1296	c.992T>G	c.(991-993)CTG>CGG	p.L331R	SEMA5B_uc011bju.1_Missense_Mutation_p.L273R|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.L331R|SEMA5B_uc010hro.1_Missense_Mutation_p.L273R|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	331	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GTCCTCCAGCAGGAATCGGCC	0.617													4	19					0	0	0.000602214	0	0
MYLK	4638	broad.mit.edu	37	3	123333127	123333127	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:123333127A>G	uc003ego.2	-	34	5852	c.5570T>C	c.(5569-5571)ATA>ACA	p.I1857T	uc003egk.2_Intron|MYLK_uc003egl.2_Missense_Mutation_p.I97T|MYLK_uc003egm.2_Missense_Mutation_p.I96T|MYLK_uc010hrr.2_Missense_Mutation_p.I292T|MYLK_uc011bjv.1_Missense_Mutation_p.I657T|MYLK_uc011bjw.1_Missense_Mutation_p.I1856T|MYLK_uc003egp.2_Missense_Mutation_p.I1788T|MYLK_uc003egq.2_Missense_Mutation_p.I1806T|MYLK_uc003egr.2_Missense_Mutation_p.I1737T|MYLK_uc003egs.2_Missense_Mutation_p.I1681T	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1857	Ig-like C2-type 9.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		ATCGTAGTCTATCTGGAAGTG	0.502													29	71					0	0	0.00178596	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125836892	125836892	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:125836892G>A	uc003eim.1	-	17	2128	c.1938C>T	c.(1936-1938)ATC>ATT	p.I646I	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Silent_p.I545I|ALDH1L1_uc003ein.1_5'Flank	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	646	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CTGTGAACCCGATTTTCCTCA	0.637													6	29					0	0	0.000157383	0	0
COL6A6	131873	broad.mit.edu	37	3	130284092	130284092	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:130284092G>A	uc010htl.2	+	3	947	c.916G>A	c.(916-918)GCC>ACC	p.A306T		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	306	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AACTGGGAAGGCCTATACTGG	0.478													20	59					0	0	0.000295444	0	0
NPHP3	27031	broad.mit.edu	37	3	132407684	132407684	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:132407684G>A	uc003epe.1	-	21	3012	c.2935C>T	c.(2935-2937)CCC>TCC	p.P979S	NPHP3_uc003epd.1_Missense_Mutation_p.P221S	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	979					maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						GGGTGATCGGGATCTAAAGCT	0.478													22	65					0	0	0.000295444	0	0
PPP2R3A	5523	broad.mit.edu	37	3	135720842	135720842	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:135720842G>A	uc003eqv.1	+	2	1067	c.502G>A	c.(502-504)GAT>AAT	p.D168N	PPP2R3A_uc011blz.1_Intron	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	168					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						TTATAACAACGATGGGAACGC	0.433													15	68					0	0	0.000422831	0	0
DBR1	51163	broad.mit.edu	37	3	137882233	137882234	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:137882233_137882234CC>AA	uc003erv.2	-	7	1034_1035	c.898_899GG>TT	c.(898-900)GGG>TTG	p.G300L	DBR1_uc003eru.2_Missense_Mutation_p.G249L|DBR1_uc003ert.2_Missense_Mutation_p.G68L	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	300						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						CCACAGGCGCCCAGTCACATTA	0.396													12	444					0	0	6.4e-05	0	0
PIK3CB	5291	broad.mit.edu	37	3	138461467	138461468	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:138461467_138461468GG>TT	uc011bmq.1	-	3	553_554	c.553_554CC>AA	c.(553-555)CCT>AAT	p.P185N		NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	185	PI3K-RBD.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TAAGTTTTCAGGGATGGATGGT	0.366													15	487					0	0	6.4e-05	0	0
C3orf72	401089	broad.mit.edu	37	3	138668406	138668406	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:138668406C>T	uc003esx.1	+	2	276	c.145C>T	c.(145-147)CTG>TTG	p.L49L	FOXL2_uc003esw.2_5'Flank|C3orf72_uc011bmr.1_5'UTR	NM_001040061	NP_001035150	Q6ZUU3	CC072_HUMAN	chromosome 3 open reading frame 72	49											0						TGCGTGCACCCTGGGAAGGGC	0.532													5	33					0	0	0.000602214	0	0
GRK7	131890	broad.mit.edu	37	3	141526599	141526599	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:141526599G>A	uc011bnd.1	+	3	1247	c.1163G>A	c.(1162-1164)CGA>CAA	p.R388Q		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	388	Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						GTTGCTGGACGAACACCATTC	0.428													17	46					0	0	0.000422831	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142557655	142557655	+	Missense_Mutation	SNP	C	T	T	rs139818603		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:142557655C>T	uc003evd.2	-	5	863	c.667G>A	c.(667-669)GAT>AAT	p.D223N		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	223	CUB 2.					extracellular region	collagen binding|heparin binding|peptidase activator activity	p.D223N(1)		ovary(2)|skin(1)	3						CTTCTAGCATCGTTGACTTCC	0.373													11	41					0	0	0.000978159	0	0
IGSF10	285313	broad.mit.edu	37	3	151166395	151166395	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:151166395G>A	uc011bod.1	-	4	1374	c.1374C>T	c.(1372-1374)ATC>ATT	p.I458I		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	458					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTGGTAAAGTGATTTGAGCAT	0.423													22	70					0	0	0.000295444	0	0
PPM1L	151742	broad.mit.edu	37	3	160786714	160786714	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:160786714C>T	uc003fdr.2	+	4	953	c.852C>T	c.(850-852)ATC>ATT	p.I284I	PPM1L_uc003fds.2_Silent_p.I105I|PPM1L_uc003fdt.2_Silent_p.I157I|PPM1L_uc010hwf.2_RNA	NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	284	Cytoplasmic (Potential).|PP2C-like.				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			ACCCAGACATCCTGACCTTTG	0.517													16	67					0	0	0.000958276	0	0
WDR49	151790	broad.mit.edu	37	3	167272581	167272581	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:167272581C>T	uc003fev.1	-	6	963	c.657G>A	c.(655-657)TGG>TGA	p.W219*	WDR49_uc003feu.1_Nonsense_Mutation_p.W44*|WDR49_uc011bpd.1_Nonsense_Mutation_p.W272*|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	219	WD 4.									large_intestine(1)|ovary(1)|skin(1)	3						CATTGAAGTCCCATATCTTTA	0.318													9	60					0	0	0.000442599	0	0
SERPINI1	5274	broad.mit.edu	37	3	167525035	167525035	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:167525035C>T	uc003ffa.3	+	6	1083	c.885C>T	c.(883-885)TTC>TTT	p.F295F	SERPINI1_uc003ffb.3_Silent_p.F295F	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	295					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						TCTCCAGGTTCACAGTGGAAC	0.348													16	51					0	0	0.000422831	0	0
MYNN	55892	broad.mit.edu	37	3	169497339	169497339	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:169497339A>T	uc003fft.2	+	3	1479	c.1050A>T	c.(1048-1050)AGA>AGT	p.R350S	MYNN_uc011bpm.1_Missense_Mutation_p.R236S|MYNN_uc003ffu.2_Missense_Mutation_p.R350S|MYNN_uc003ffv.2_Missense_Mutation_p.R77S|MYNN_uc010hwo.2_Missense_Mutation_p.R350S|MYNN_uc003ffw.1_RNA	NM_018657	NP_061127	Q9NPC7	MYNN_HUMAN	myoneurin	350	C2H2-type 2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1	all_cancers(22;9.55e-22)|all_epithelial(15;2.04e-26)|all_lung(20;5.05e-16)|Lung NSC(18;2.19e-15)|Ovarian(172;0.000223)|Breast(254;0.197)		Epithelial(2;4.03e-64)|all cancers(2;2.19e-58)|Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			CGCATGTAAGAACTCATACAG	0.388													17	43					0	0	0.00074312	0	0
CHRD	8646	broad.mit.edu	37	3	184104890	184104890	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:184104890G>A	uc003fov.2	+	18	2588	c.2342G>A	c.(2341-2343)GGA>GAA	p.G781E	CHRD_uc003fow.2_Missense_Mutation_p.G411E|CHRD_uc003fox.2_Missense_Mutation_p.G781E|CHRD_uc003foy.2_Missense_Mutation_p.G411E|CHRD_uc010hyc.2_Missense_Mutation_p.G371E|CHRD_uc011brr.1_Missense_Mutation_p.G323E	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	781					BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CGGGACCCAGGAGAGGGTGAG	0.582													18	50					0	0	0.00152264	0	0
TBCCD1	55171	broad.mit.edu	37	3	186272697	186272697	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:186272697A>G	uc003fqg.2	-	5	1165	c.1036T>C	c.(1036-1038)TCT>CCT	p.S346P	TBCCD1_uc011bry.1_Missense_Mutation_p.S346P|TBCCD1_uc003fqh.2_Missense_Mutation_p.S250P	NM_018138	NP_060608	Q9NVR7	TBCC1_HUMAN	TBCC domain containing 1	346	C-CAP/cofactor C-like.				cell morphogenesis|maintenance of centrosome location|maintenance of Golgi location|regulation of cell migration|regulation of cell shape	spindle pole centrosome	binding			large_intestine(1)|ovary(1)	2	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.3e-21)	GBM - Glioblastoma multiforme(93;0.0474)		CGTAAGGGAGAGAGCAGATAT	0.408													19	55					0	0	0.000586117	0	0
ATP13A5	344905	broad.mit.edu	37	3	193080362	193080362	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:193080362T>A	uc011bsq.1	-	4	449	c.449A>T	c.(448-450)AAA>ATA	p.K150I		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	150					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TTACCCAACTTTCTGAAACCG	0.443													43	103					0	0	0.000781405	0	0
MUC20	200958	broad.mit.edu	37	3	195453210	195453210	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:195453210C>T	uc010hzo.2	+	3	1349	c.1223C>T	c.(1222-1224)GCC>GTC	p.A408V	MUC20_uc010hzp.2_Missense_Mutation_p.A373V|MUC20_uc011bte.1_RNA	NM_152673	NP_689886	Q8N307	MUC20_HUMAN	mucin 20 isoform L	579	Involved in oligomerization.				protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane					0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		CCCTCGGAAGCCGCCCTCAAG	0.607													4	28					0	0	0.000602214	0	0
EVC	2121	broad.mit.edu	37	4	5721001	5721001	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:5721001G>C	uc003gil.1	+	2	385	c.201G>C	c.(199-201)AAG>AAC	p.K67N	EVC_uc003gim.1_RNA	NM_153717	NP_714928	P57679	EVC_HUMAN	Ellis van Creveld syndrome protein	67					muscle organ development	integral to membrane				ovary(1)|skin(1)	2		Myeloproliferative disorder(84;0.117)				ATCTGCTCAAGAATTTGGAGT	0.517													20	127					0	0	0.000229342	0	0
WFS1	7466	broad.mit.edu	37	4	6302805	6302805	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:6302805C>T	uc003giy.2	+	8	1449	c.1283C>T	c.(1282-1284)CCC>CTC	p.P428L	WFS1_uc003gix.2_Missense_Mutation_p.P428L|WFS1_uc003giz.2_Missense_Mutation_p.P246L	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	428	Helical; (Potential).				endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		GACTGCATCCCCTGCTCGGAG	0.607													31	278					0	0	0.000491102	0	0
SLIT2	9353	broad.mit.edu	37	4	20555511	20555511	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:20555511G>A	uc003gpr.1	+	26	2849	c.2645G>A	c.(2644-2646)GGA>GAA	p.G882E	SLIT2_uc003gps.1_Missense_Mutation_p.G874E	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	882	LRRCT 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AAGGAGCCTGGAATTGCTCGT	0.423													15	57					0	0	0.000566183	0	0
KCNIP4	80333	broad.mit.edu	37	4	21699110	21699110	+	Translation_Start_Site	SNP	A	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:21699110A>C	uc003gqh.1	-	1	209	c.-49T>G	c.(-51--47)ATTAT>ATGAT		KCNIP4_uc003gqi.1_Intron	NM_001035003	NP_001030175	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 5							plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				CTTTGCCaataataataataa	0.403													9	16					0	0	0.000274275	0	0
GBA3	57733	broad.mit.edu	37	4	22749499	22749499	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:22749499C>T	uc003gqp.3	+	3	958	c.867C>T	c.(865-867)TTC>TTT	p.F289F	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Silent_p.F290F	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	289					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						TTCCAGAATTCACTGAAGAAG	0.403													5	15					0	0	0.00116845	0	0
GBA3	57733	broad.mit.edu	37	4	22820418	22820418	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:22820418G>A	uc003gqp.3	+	5	1373	c.1282G>A	c.(1282-1284)GGA>AGA	p.G428R	GBA3_uc010iep.2_Missense_Mutation_p.G121R|GBA3_uc011bxo.1_Missense_Mutation_p.G429R	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	428					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						GTGGAACCAGGGATACAGCAG	0.418													3	9					0	0	6.4e-05	0	0
KLB	152831	broad.mit.edu	37	4	39439522	39439522	+	Silent	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:39439522A>G	uc003gua.2	+	3	1609	c.1512A>G	c.(1510-1512)CGA>CGG	p.R504R	KLB_uc011byj.1_Silent_p.R504R	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	504	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						AGATCATACGAGAAAATGGTT	0.428													13	41					0	0	0.000219431	0	0
ATP10D	57205	broad.mit.edu	37	4	47559942	47559942	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:47559942G>A	uc003gxk.1	+	12	2250	c.2086G>A	c.(2086-2088)GAG>AAG	p.E696K	ATP10D_uc003gxl.1_Intron	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	696	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						CACAGAAACAGAGAAACAACA	0.562													20	36					0	0	0.00121646	0	0
NFXL1	152518	broad.mit.edu	37	4	47912912	47912912	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:47912912C>T	uc010igh.2	-	3	512	c.335G>A	c.(334-336)GGA>GAA	p.G112E	NFXL1_uc003gxp.2_Missense_Mutation_p.G112E|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.G112E	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	112						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						ATCTTCATCTCCTTCTTCAGA	0.338													5	44					0	0	0.000602214	0	0
TEC	7006	broad.mit.edu	37	4	48178188	48178188	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:48178188C>T	uc003gxz.2	-	3	245	c.154G>A	c.(154-156)GGG>AGG	p.G52R		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	52	PH.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						TCAATAAACCCCTTTCTGTAT	0.308													24	62					0	0	0.000586117	0	0
CWH43	80157	broad.mit.edu	37	4	49052780	49052780	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:49052780C>T	uc003gyv.2	+	15	2117	c.1935C>T	c.(1933-1935)ATC>ATT	p.I645I	CWH43_uc011bzl.1_Silent_p.I618I	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	645					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						AATTTAGGATCCCTGATGACC	0.393													11	41					0	0	0.00136819	0	0
PAICS	10606	broad.mit.edu	37	4	57325560	57325560	+	Silent	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:57325560T>G	uc003hbs.1	+	10	1365	c.1134T>G	c.(1132-1134)CTT>CTG	p.L378L	PAICS_uc011cac.1_Silent_p.L378L|PAICS_uc003hbt.1_Silent_p.L385L|PAICS_uc003hbu.1_Silent_p.L378L|PAICS_uc010ihd.1_Silent_p.L379L	NM_006452	NP_006443	P22234	PUR6_HUMAN	phosphoribosylaminoimidazole carboxylase,	378	AIR carboxylase.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|identical protein binding|phosphoribosylaminoimidazole carboxylase activity|phosphoribosylaminoimidazolesuccinocarboxamide synthase activity				0	Glioma(25;0.08)|all_neural(26;0.101)				L-Aspartic Acid(DB00128)	CAACCGTACTTTCTCCAGAAG	0.373													9	31					0	0	0.000673444	0	0
TECRL	253017	broad.mit.edu	37	4	65147222	65147222	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:65147222G>A	uc003hcv.2	-	10	997	c.888C>T	c.(886-888)TTC>TTT	p.F296F	TECRL_uc010ihi.2_RNA	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	296					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						ATGAAACCAGGAAAAACATCC	0.333													10	23					0	0	0.000151284	0	0
UGT2B28	54490	broad.mit.edu	37	4	70160312	70160312	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:70160312C>T	uc003hej.2	+	6	1377	c.1375C>T	c.(1375-1377)CGA>TGA	p.R459*	UGT2B28_uc010ihr.2_3'UTR	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	459					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GCCCCTGCATCGAGCAGTCTT	0.408													5	19					0	0	0.00116845	0	0
FRAS1	80144	broad.mit.edu	37	4	79173607	79173607	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:79173607G>A	uc003hlb.2	+	5	811	c.371G>A	c.(370-372)CGA>CAA	p.R124Q	FRAS1_uc003hkw.2_Missense_Mutation_p.R124Q|FRAS1_uc003hky.1_5'UTR|FRAS1_uc003hkz.2_5'Flank	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	124	VWFC 2.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GGGGAAGTCCGATGTACCCCC	0.532													7	45					0	0	0.000157383	0	0
MEPE	56955	broad.mit.edu	37	4	88766238	88766239	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:88766238_88766239CC>TA	uc003hqy.2	+	4	257_258	c.218_219CC>TA	c.(217-219)TCC>TTA	p.S73L	MEPE_uc010ikn.2_5'UTR	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	73					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		AAAGATTTGTCCCTTTCTGAAG	0.312													14	39					0	0	6.4e-05	0	0
PPM1K	152926	broad.mit.edu	37	4	89186164	89186164	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:89186164C>A	uc003hrm.3	-	6	1366	c.976G>T	c.(976-978)GTG>TTG	p.V326L		NM_152542	NP_689755	Q8N3J5	PPM1K_HUMAN	protein phosphatase 1K (PP2C domain containing)	326	PP2C-like.				protein dephosphorylation	mitochondrial matrix|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000192)		TGTTCAGTCACCGCATGGGCT	0.478													7	104					2.17888e-05	0.000159192	0.000442599	1	0
PDHA2	5161	broad.mit.edu	37	4	96761521	96761521	+	Silent	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:96761521T>C	uc003htr.3	+	1	283	c.220T>C	c.(220-222)TTG>CTG	p.L74L		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	74					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	CCGCATGGAATTGAAGGCAGA	0.512													14	45					0	0	0.000219431	0	0
TACR3	6870	broad.mit.edu	37	4	104510934	104510934	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:104510934T>C	uc003hxe.1	-	5	1446	c.1303A>G	c.(1303-1305)AGT>GGT	p.S435G		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	435	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		CCATTGAAACTTGGGTCTCTT	0.493													10	55					0	0	0.000673444	0	0
CFI	3426	broad.mit.edu	37	4	110663746	110663746	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:110663746C>T	uc003hzr.3	-	12	1643	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K	CFI_uc003hzq.2_Missense_Mutation_p.E276K|CFI_uc011cft.1_Missense_Mutation_p.E487K|CFI_uc003hzs.3_Missense_Mutation_p.E472K	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	479	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		AAGACTCTTTCGTTATCTAAA	0.338													7	46					0	0	8.12818e-05	0	0
CAMK2D	817	broad.mit.edu	37	4	114378553	114378553	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:114378553G>A	uc003ibi.2	-	17	2230	c.1371C>T	c.(1369-1371)CGC>CGT	p.R457R	CAMK2D_uc003ibj.2_Silent_p.R457R|CAMK2D_uc003ibk.2_Silent_p.R457R|CAMK2D_uc003ibo.3_Silent_p.R491R|CAMK2D_uc003ibm.2_Silent_p.R471R|CAMK2D_uc003ibn.2_Silent_p.R468R|CAMK2D_uc003ibl.2_Silent_p.R457R	NM_001221	NP_001212	Q13557	KCC2D_HUMAN	calcium/calmodulin-dependent protein kinase II	457					interferon-gamma-mediated signaling pathway|regulation of cell growth|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1		Ovarian(17;0.00369)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000271)		TTCCATCCCGGCGGTGCCACA	0.473													12	38					0	0	0.000219431	0	0
NDST4	64579	broad.mit.edu	37	4	115769380	115769380	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:115769380C>T	uc003ibu.2	-	9	2610	c.1931G>A	c.(1930-1932)GGA>GAA	p.G644E	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	644	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CCAGTCTATTCCTTTGTGATA	0.333													12	34					0	0	0.00136819	0	0
TNIP3	79931	broad.mit.edu	37	4	122063913	122063913	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:122063913C>T	uc010ing.2	-	8	950	c.754G>A	c.(754-756)GAG>AAG	p.E252K	TNIP3_uc010inh.2_Missense_Mutation_p.E252K|TNIP3_uc011cgj.1_Missense_Mutation_p.E310K	NM_024873	NP_079149	Q96KP6	TNIP3_HUMAN	TNFAIP3 interacting protein 3	252	Potential.									ovary(1)	1						TTTTCTTTCTCCATCTGACAA	0.323													12	73					0	0	0.00136819	0	0
ANKRD50	57182	broad.mit.edu	37	4	125590850	125590850	+	Silent	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:125590850A>G	uc003ifg.3	-	3	3848	c.3582T>C	c.(3580-3582)ACT>ACC	p.T1194T	ANKRD50_uc011cgo.1_Silent_p.T1015T|ANKRD50_uc010inw.2_Silent_p.T1194T	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	1194	Ser-rich.									central_nervous_system(1)	1						TAGATGAAGTAGTTCTCAAAG	0.388													8	30					0	0	0.000157383	0	0
TRIM2	23321	broad.mit.edu	37	4	154256063	154256063	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:154256063T>C	uc003ing.2	+	12	2381	c.2180T>C	c.(2179-2181)GTT>GCT	p.V727A	TRIM2_uc003inh.2_Missense_Mutation_p.V754A	NM_001130067	NP_001123539	Q9C040	TRIM2_HUMAN	tripartite motif-containing 2 isoform 2	727	NHL 6.					cytoplasm	zinc ion binding			central_nervous_system(1)	1	all_hematologic(180;0.093)	Medulloblastoma(177;0.00225)		GBM - Glioblastoma multiforme(119;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0703)		GATGGTCATGTTGTGGTTGCA	0.468													6	31					0	0	0.000157383	0	0
GUCY1B3	2983	broad.mit.edu	37	4	156715051	156715051	+	Nonsense_Mutation	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:156715051T>G	uc003ipc.2	+	6	706	c.539T>G	c.(538-540)TTA>TGA	p.L180*	GUCY1B3_uc011cio.1_Nonsense_Mutation_p.L202*|GUCY1B3_uc011cip.1_Nonsense_Mutation_p.L160*|GUCY1B3_uc003ipd.2_Nonsense_Mutation_p.L108*|GUCY1B3_uc010iqf.2_Nonsense_Mutation_p.L180*|GUCY1B3_uc010iqg.2_Nonsense_Mutation_p.L108*|GUCY1B3_uc011ciq.1_Nonsense_Mutation_p.L108*	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	180					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		ACTCAATTTTTAATTGAAGAA	0.323													5	61					0	0	0.000274275	0	0
TDO2	6999	broad.mit.edu	37	4	156841079	156841079	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:156841079C>A	uc003ipf.1	+	12	1222	c.1158C>A	c.(1156-1158)CAC>CAA	p.H386Q		NM_005651	NP_005642	P48775	T23O_HUMAN	tryptophan 2,3-dioxygenase	386					tryptophan catabolic process to kynurenine	cytosol	tryptophan 2,3-dioxygenase activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		KIRC - Kidney renal clear cell carcinoma(143;0.0455)|Kidney(143;0.0568)|COAD - Colon adenocarcinoma(41;0.141)	L-Tryptophan(DB00150)	CAACCATTCACAAATTTCTAT	0.363													11	32					0.00136819	0.00986397	0.00136819	1	0
GRIA2	2891	broad.mit.edu	37	4	158254046	158254046	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:158254046G>A	uc003ipm.3	+	7	1417	c.958G>A	c.(958-960)GAA>AAA	p.E320K	GRIA2_uc011cit.1_Missense_Mutation_p.E273K|GRIA2_uc003ipl.3_Missense_Mutation_p.E320K|GRIA2_uc003ipk.3_Missense_Mutation_p.E273K|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	320	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	GCAAAGAATTGAAATCTCCCG	0.483													7	21					0	0	8.12818e-05	0	0
RXFP1	59350	broad.mit.edu	37	4	159560435	159560435	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:159560435C>T	uc003ipz.2	+	14	1149	c.1067C>T	c.(1066-1068)TCA>TTA	p.S356L	RXFP1_uc010iqj.1_Missense_Mutation_p.S185L|RXFP1_uc011cja.1_Missense_Mutation_p.S251L|RXFP1_uc010iqo.2_Missense_Mutation_p.S308L|RXFP1_uc011cjb.1_Missense_Mutation_p.S254L|RXFP1_uc010iqk.2_Missense_Mutation_p.S224L|RXFP1_uc011cjc.1_Missense_Mutation_p.S275L|RXFP1_uc011cjd.1_Missense_Mutation_p.S275L|RXFP1_uc010iql.2_Missense_Mutation_p.S200L|RXFP1_uc011cje.1_Missense_Mutation_p.S383L|RXFP1_uc010iqm.2_Missense_Mutation_p.S323L|RXFP1_uc011cjf.1_Missense_Mutation_p.S225L|RXFP1_uc010iqn.2_Missense_Mutation_p.S301L	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	356	Extracellular (Potential).|LRR 9.					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		ATTGAAATTTCAAATATCCAA	0.284													8	49					0	0	0.000274275	0	0
KLHL2	11275	broad.mit.edu	37	4	166239029	166239029	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:166239029C>T	uc003irb.2	+	14	1920	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F	KLHL2_uc011cjm.1_Missense_Mutation_p.S558F|KLHL2_uc003irc.2_Missense_Mutation_p.S466F|KLHL2_uc010ira.2_Missense_Mutation_p.S207F	NM_007246	NP_009177	O95198	KLHL2_HUMAN	kelch-like 2, Mayven isoform 1	554	Kelch 6.				intracellular protein transport	actin cytoskeleton|cytoplasm	actin binding|transporter activity				0	all_hematologic(180;0.221)			GBM - Glioblastoma multiforme(119;2.94e-27)|COAD - Colon adenocarcinoma(41;1.4e-05)|Kidney(143;4.95e-05)|KIRC - Kidney renal clear cell carcinoma(143;0.000927)		GATGATGGTTCCTGTAACTTG	0.368													7	67					0	0	0.000157383	0	0
DDX60L	91351	broad.mit.edu	37	4	169374306	169374306	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:169374306C>T	uc003irq.3	-	8	1186	c.965G>A	c.(964-966)TGG>TAG	p.W322*	DDX60L_uc003irr.1_Nonsense_Mutation_p.W322*|DDX60L_uc003irs.1_Nonsense_Mutation_p.W49*	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	322							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		GTTCCTAATCCAAGAGCATGT	0.388													6	40					0	0	0.000274275	0	0
GLRA3	8001	broad.mit.edu	37	4	175649721	175649721	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:175649721G>A	uc003ity.1	-	4	899	c.396C>T	c.(394-396)TTC>TTT	p.F132F	GLRA3_uc003itz.1_Silent_p.F132F	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	132	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	CATTGGCAAAGAACAAATCAG	0.408													15	65					0	0	0.000422831	0	0
ADAM29	11086	broad.mit.edu	37	4	175897899	175897899	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:175897899G>A	uc003iuc.2	+	5	1893	c.1223G>A	c.(1222-1224)GGA>GAA	p.G408E	ADAM29_uc003iud.2_Missense_Mutation_p.G408E|ADAM29_uc010irr.2_Missense_Mutation_p.G408E|ADAM29_uc011cki.1_Missense_Mutation_p.G408E	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	408	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GTTGAAGAAGGAGAAGAGTGT	0.428													24	87					0	0	0.000586117	0	0
ADAM29	11086	broad.mit.edu	37	4	175898183	175898183	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:175898183G>A	uc003iuc.2	+	5	2177	c.1507G>A	c.(1507-1509)GAA>AAA	p.E503K	ADAM29_uc003iud.2_Missense_Mutation_p.E503K|ADAM29_uc010irr.2_Missense_Mutation_p.E503K|ADAM29_uc011cki.1_Missense_Mutation_p.E503K	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	503	Cys-rich.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TGACCGCAATGAACAGTGTAG	0.458													16	67					0	0	0.00121646	0	0
ASB5	140458	broad.mit.edu	37	4	177190076	177190076	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:177190076T>C	uc003iuq.1	-	1	200	c.184A>G	c.(184-186)ACC>GCC	p.T62A		NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	62					intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		TGTCCTTGGGTTACTCCATAA	0.393													3	30					0	0	0.000602214	0	0
CCDC110	256309	broad.mit.edu	37	4	186380286	186380286	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:186380286T>G	uc003ixu.3	-	6	1531	c.1455A>C	c.(1453-1455)GAA>GAC	p.E485D	CCDC110_uc003ixv.3_Missense_Mutation_p.E448D|CCDC110_uc011ckt.1_Missense_Mutation_p.E485D	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	485	Potential.					nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		TACTCTTTTCTTCAACCAGAT	0.279													6	47					0	0	0.000157383	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190905467	190905467	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr4:190905467C>T	uc011clg.1	-	3	220	c.217G>A	c.(217-219)GAC>AAC	p.D73N		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	74					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		CGCACAGAGTCCATGGTGCCC	0.692													5	48					0	0	0.000442599	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	140685	140685	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140685C>T	uc003jak.2	+	1	313	c.263C>T	c.(262-264)CCC>CTC	p.P88L		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	88					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GAAAGGGCACCCAGAAGCTCC	0.662													7	13					0	0	0.000442599	0	0
SLC12A7	10723	broad.mit.edu	37	5	1079556	1079556	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:1079556G>A	uc003jbu.2	-	10	1419	c.1353C>T	c.(1351-1353)ATC>ATT	p.I451I		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	451	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	TCCCCGTGGGGATGGACTTCT	0.587													22	76					0	0	0.00127121	0	0
DNAH5	1767	broad.mit.edu	37	5	13759047	13759047	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:13759047C>T	uc003jfd.2	-	61	10369	c.10327G>A	c.(10327-10329)GAT>AAT	p.D3443N	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3443	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCTGCAGATCCTGCATGGCC	0.547									Kartagener_syndrome				59	112					0	0	0.000781405	0	0
DNAH5	1767	broad.mit.edu	37	5	13830235	13830235	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:13830235G>A	uc003jfd.2	-	37	6191	c.6149C>T	c.(6148-6150)TCC>TTC	p.S2050F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2050	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGAATAATGGAAATTTGCTG	0.398									Kartagener_syndrome				17	55					0	0	0.000958276	0	0
TRIO	7204	broad.mit.edu	37	5	14394211	14394211	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:14394211G>A	uc003jff.2	+	28	4289	c.4283G>A	c.(4282-4284)CGA>CAA	p.R1428Q	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.R1379Q|TRIO_uc003jfh.1_Missense_Mutation_p.R1077Q	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1428	DH 1.			R->A: 80% decrease in nucleotide exchange activity.	apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					CCAGTTCAGCGAATAACGAAG	0.313													17	72					0	0	0.00121646	0	0
TRIO	7204	broad.mit.edu	37	5	14482854	14482854	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:14482854C>T	uc003jff.2	+	46	6635	c.6629C>T	c.(6628-6630)CCG>CTG	p.P2210L	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Missense_Mutation_p.P1859L	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2210	PH 2.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					TTCTCCATGCCGGGATTCCTG	0.488													10	86					0	0	0.000442599	0	0
BASP1	10409	broad.mit.edu	37	5	17275434	17275434	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:17275434C>T	uc003jfx.2	+	2	288	c.109C>T	c.(109-111)CCG>TCG	p.P37S		NM_006317	NP_006308	P80723	BASP1_HUMAN	brain abundant, membrane attached signal protein	37					glomerular visceral epithelial cell differentiation|negative regulation of transcription, DNA-dependent	cytoplasm|cytoskeleton|growth cone|nuclear speck|plasma membrane	protein domain specific binding|transcription corepressor activity|transcription regulatory region DNA binding				0						GGAGGGGACCCCGAAGGAGAG	0.642													6	12					0	0	0.000274275	0	0
CDH10	1008	broad.mit.edu	37	5	24498584	24498584	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:24498584A>C	uc003jgr.1	-	9	1770	c.1438T>G	c.(1438-1440)TTG>GTG	p.L480V	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	480	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TTAACATCCAAAATTCTCACA	0.398										HNSCC(23;0.051)			16	42					0	0	0.000566183	0	0
CDH6	1004	broad.mit.edu	37	5	31323187	31323187	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:31323187C>T	uc003jhe.1	+	12	2471	c.2145C>T	c.(2143-2145)TTC>TTT	p.F715F		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	715	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TCAGAGATTTCATTAACCAAA	0.532													8	35					0	0	0.000442599	0	0
PDZD2	23037	broad.mit.edu	37	5	32074135	32074135	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:32074135G>C	uc003jhl.2	+	18	3311	c.2923G>C	c.(2923-2925)GAG>CAG	p.E975Q	PDZD2_uc003jhm.2_Missense_Mutation_p.E975Q|PDZD2_uc011cnx.1_Missense_Mutation_p.E801Q	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	975					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TGATGAGGAAGAGTTTGACAG	0.602													4	45					0	0	0.00024832	0	0
NPR3	4883	broad.mit.edu	37	5	32774912	32774912	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:32774912G>A	uc003jhv.2	+	4	1376	c.1158G>A	c.(1156-1158)GGG>GGA	p.G386G	NPR3_uc010iuo.2_Silent_p.G170G|NPR3_uc011cnz.1_Silent_p.G170G|NPR3_uc003jhu.2_Silent_p.G386G	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	386	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	AGGATGGAGGGAAAATTATAC	0.443													32	114					0	0	0.000339439	0	0
SKP2	6502	broad.mit.edu	37	5	36181928	36181928	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:36181928G>A	uc003jkc.1	+	10	1252	c.1070G>A	c.(1069-1071)GGA>GAA	p.G357E	SKP2_uc011cou.1_Missense_Mutation_p.G143E|SKP2_uc003jkd.2_Intron	NM_005983	NP_005974	Q13309	SKP2_HUMAN	S-phase kinase-associated protein 2 isoform 1	357	LRR 9.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G1/S transition of mitotic cell cycle|S phase of mitotic cell cycle	nucleoplasm|SCF ubiquitin ligase complex	protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4	all_lung(31;5.63e-05)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGTGAACTTGGAGAAATTCCC	0.368													38	126					0	0	0.000509022	0	0
SLC1A3	6507	broad.mit.edu	37	5	36684074	36684074	+	Silent	SNP	G	A	A	rs140281779		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:36684074G>A	uc003jkj.3	+	9	1874	c.1398G>A	c.(1396-1398)ACG>ACA	p.T466T	SLC1A3_uc011cox.1_Silent_p.T359T|SLC1A3_uc010iuy.2_Intron	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	466					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	ACGACATCACGCTCATCATCG	0.597													20	104					0	0	0.000295444	0	0
C5orf42	65250	broad.mit.edu	37	5	37183485	37183485	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:37183485A>T	uc011cpa.1	-	26	5029	c.4798T>A	c.(4798-4800)TTA>ATA	p.L1600I	C5orf42_uc011coy.1_Missense_Mutation_p.L101I|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.L675I|C5orf42_uc011cpb.1_Missense_Mutation_p.L481I	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1600										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			TGTCGTTTTAATGTTGTATGT	0.358													13	34					0	0	0.00136819	0	0
PAPD4	167153	broad.mit.edu	37	5	78952792	78952792	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:78952792C>T	uc010jae.1	+	12	1457	c.1039C>T	c.(1039-1041)CCC>TCC	p.P347S	PAPD4_uc003kgb.2_Missense_Mutation_p.P347S|PAPD4_uc010jaf.1_Missense_Mutation_p.P347S|PAPD4_uc003kga.2_Missense_Mutation_p.P343S|PAPD4_uc003kfz.2_Missense_Mutation_p.P304S	NM_001114393	NP_001107865	Q6PIY7	GLD2_HUMAN	PAP associated domain containing 4	347					histone mRNA catabolic process|mRNA processing|RNA polyadenylation	cytoplasm	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity			ovary(1)	1		Lung NSC(167;0.00293)|all_lung(232;0.00323)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;8.61e-47)|Epithelial(54;1.32e-41)|all cancers(79;2.45e-36)		CCTACCTGAACCCATCCTTCC	0.323													8	39					0	0	0.000442599	0	0
CMYA5	202333	broad.mit.edu	37	5	79032417	79032417	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:79032417G>T	uc003kgc.2	+	2	7901	c.7829G>T	c.(7828-7830)AGA>ATA	p.R2610I		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2610						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CCAGAAATCAGAGAAGCAAAG	0.428													6	26					1.12685e-05	8.24214e-05	0.000274275	1	0
HAPLN1	1404	broad.mit.edu	37	5	82948513	82948513	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:82948513G>A	uc003kim.2	-	2	302	c.231C>T	c.(229-231)ATC>ATT	p.I77I	HAPLN1_uc003kin.2_Silent_p.I77I	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	77	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		ACTTAATTCGGATTTTATGGA	0.433													12	63					0	0	0.000151284	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147811	100147811	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:100147811G>A	uc003knk.2	-	5	1148	c.820C>T	c.(820-822)CCT>TCT	p.P274S		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	274	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		CTTTTGATAGGAACTTTGTTG	0.378													20	39					0	0	0.00047179	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759016	121759016	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:121759016G>A	uc003ksw.1	+	4	790	c.584G>A	c.(583-585)GGA>GAA	p.G195E	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.G195E|SNCAIP_uc003ksx.1_Missense_Mutation_p.G242E|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.G195E	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	195					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TGCTCTACAGGAAGTTCTGAG	0.463													22	55					0	0	0.000375601	0	0
CTXN3	613212	broad.mit.edu	37	5	126993360	126993360	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:126993360C>T	uc003kul.3	+	3	721	c.147C>T	c.(145-147)TTC>TTT	p.F49F	CTXN3_uc003kum.3_Silent_p.F49F	NM_001048252	NP_001041717	Q4LDR2	CTXN3_HUMAN	cortexin 3	49	Helical; (Potential).					integral to membrane					0		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0128)|COAD - Colon adenocarcinoma(49;0.0234)|OV - Ovarian serous cystadenocarcinoma(64;0.038)		TCCGGTGCTTCCGGATTCTTT	0.468													15	42					0	0	0.000308642	0	0
FBN2	2201	broad.mit.edu	37	5	127654673	127654673	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:127654673G>A	uc003kuu.2	-	35	4931	c.4492C>T	c.(4492-4494)CAA>TAA	p.Q1498*		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1498	EGF-like 25; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CAAATGTTTTGGAAGGAGCAT	0.323													14	52					0	0	0.000219431	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128862105	128862105	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:128862105G>A	uc003kvb.1	+	4	1024	c.1024G>A	c.(1024-1026)GGA>AGA	p.G342R	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	342	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TTCCTATCATGGAGCAGATGC	0.393													18	51					0	0	0.00074312	0	0
CD14	929	broad.mit.edu	37	5	140011580	140011580	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140011580G>A	uc003lgi.1	-	2	1343	c.989C>T	c.(988-990)CCC>CTC	p.P330L	CD14_uc003lgj.1_Missense_Mutation_p.P330L	NM_000591	NP_000582	P08571	CD14_HUMAN	CD14 antigen precursor	330	LRR 11.				apoptosis|cellular response to lipopolysaccharide|cellular response to lipoteichoic acid|inflammatory response|innate immune response|phagocytosis|positive regulation of tumor necrosis factor production|Toll signaling pathway	anchored to membrane|plasma membrane	lipopolysaccharide binding|lipoteichoic acid binding|opsonin receptor activity|peptidoglycan receptor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACCAGGAAGGGATTCCCGTC	0.642													5	18					0	0	0.000602214	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209737	140209737	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140209737G>A	uc003lho.2	+	1	2088	c.2061G>A	c.(2059-2061)GCG>GCA	p.A687A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Silent_p.A687A	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	687	Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGCGCCGCGGGCCCAGAGG	0.672													4	43					0	0	0.00116845	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215343	140215343	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140215343G>A	uc003lhq.2	+	1	1375	c.1375G>A	c.(1375-1377)GAG>AAG	p.E459K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.E459K	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	459	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGCAGCCCGAGTATACGGT	0.672													26	44					0	0	0.001512	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255201	140255201	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140255201C>T	uc003lic.2	+	1	271	c.144C>T	c.(142-144)ATC>ATT	p.I48I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.I48I	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	48	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGCCGCATCGCTCAGGACC	0.647													15	61					0	0	0.000422831	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515368	140515368	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140515368C>T	uc003liq.2	+	1	569	c.352C>T	c.(352-354)CAA>TAA	p.Q118*		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	118	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCAGTTTTTTCAAACTGATCT	0.468													16	58					0	0	0.000958276	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515473	140515473	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140515473C>T	uc003liq.2	+	1	674	c.457C>T	c.(457-459)CCC>TCC	p.P153S		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	153	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GACTGTGTTTCCCTTAAAAAT	0.463													9	52					0	0	0.000673444	0	0
PCDHB9	56127	broad.mit.edu	37	5	140567778	140567778	+	Missense_Mutation	SNP	C	A	A	rs138983173	by1000genomes	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140567778C>A	uc003liw.1	+	1	886	c.886C>A	c.(886-888)CCT>ACT	p.P296T		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	296	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAAATCAATCCTTTTTCTGG	0.368													7	17					2.0095e-06	1.47146e-05	8.12818e-05	1	0
PCDHB12	56124	broad.mit.edu	37	5	140589962	140589962	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140589962G>A	uc003liz.2	+	1	1672	c.1483G>A	c.(1483-1485)GAC>AAC	p.D495N	PCDHB12_uc011dak.1_Missense_Mutation_p.D158N	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	495	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCGTCCCAGGACCCGCACCT	0.662													12	73					0	0	0.00136819	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140740865	140740865	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:140740865G>A	uc003ljs.1	+	1	1163	c.1163G>A	c.(1162-1164)GGA>GAA	p.G388E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Missense_Mutation_p.G388E	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	388	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAAGTGTTGGGAAATGCCAAG	0.468													14	94					0	0	0.000151284	0	0
TCERG1	10915	broad.mit.edu	37	5	145872509	145872509	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:145872509G>A	uc003lob.2	+	15	2179	c.2139G>A	c.(2137-2139)AGG>AGA	p.R713R	TCERG1_uc003loc.2_Silent_p.R692R	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	713					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TAAAGACCAGGGCAGAGGAAG	0.313													4	26					0	0	0.00024832	0	0
NIPAL4	348938	broad.mit.edu	37	5	156890327	156890327	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:156890327G>A	uc003lwx.3	+	2	565	c.449G>A	c.(448-450)GGA>GAA	p.G150E	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Missense_Mutation_p.G150E|NIPAL4_uc010jin.1_Missense_Mutation_p.E85K	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	150	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						GTGGCCACGGGAGCCACTCGA	0.612													4	27					0	0	0.00116845	0	0
GABRG2	2566	broad.mit.edu	37	5	161520913	161520913	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:161520913G>A	uc003lyz.3	+	2	545	c.187G>A	c.(187-189)GAG>AAG	p.E63K	GABRG2_uc010jjc.2_Missense_Mutation_p.E63K|GABRG2_uc003lyy.3_Missense_Mutation_p.E63K|GABRG2_uc011dej.1_5'UTR	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	63	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		AAAAGTTCCTGAGGGTGATGT	0.388													5	37					0	0	0.00116845	0	0
WWC1	23286	broad.mit.edu	37	5	167833291	167833291	+	Missense_Mutation	SNP	G	A	A	rs78544296		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:167833291G>A	uc003lzu.2	+	6	772	c.679G>A	c.(679-681)GCT>ACT	p.A227T	WWC1_uc003lzv.2_Missense_Mutation_p.A227T|WWC1_uc011den.1_Missense_Mutation_p.A227T|WWC1_uc003lzw.2_Missense_Mutation_p.A26T	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	227					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		CATCAAAAAGGCTATTACCTG	0.398													24	71					0	0	0.00047179	0	0
CPEB4	80315	broad.mit.edu	37	5	173359473	173359473	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:173359473C>G	uc003mcs.3	+	3	2634	c.1228C>G	c.(1228-1230)CCA>GCA	p.P410A	CPEB4_uc010jju.1_Intron|CPEB4_uc010jjv.2_Intron|CPEB4_uc011dfg.1_Intron|CPEB4_uc003mct.3_Missense_Mutation_p.P28A|CPEB4_uc003mcu.3_Intron	NM_030627	NP_085130	Q17RY0	CPEB4_HUMAN	cytoplasmic polyadenylation element binding	410							nucleotide binding|RNA binding				0	Renal(175;0.000159)|Lung NSC(126;0.0128)|all_lung(126;0.0202)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CTATTCATATCCAGGATCCGA	0.363													3	43					0	0	0.00024832	0	0
HK3	3101	broad.mit.edu	37	5	176308425	176308425	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:176308425C>T	uc003mfa.2	-	18	2597	c.2505G>A	c.(2503-2505)AGG>AGA	p.R835R	HK3_uc003mez.2_Silent_p.R391R	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	835	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCTGGGCAGCCCTCTGGGACA	0.652													7	23					0	0	0.000157383	0	0
GRM6	2916	broad.mit.edu	37	5	178413137	178413137	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:178413137G>A	uc003mjr.2	-	8	2297	c.2118C>T	c.(2116-2118)TCC>TCT	p.S706S	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Silent_p.S289S|GRM6_uc003mjs.1_Silent_p.S326S	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	706	Helical; Name=4; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		CCACCTGCAGGGAGGTGAGGC	0.537													6	12					0	0	8.12818e-05	0	0
FLT4	2324	broad.mit.edu	37	5	180050949	180050949	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:180050949C>T	uc003mma.3	-	11	1613	c.1534G>A	c.(1534-1536)GAG>AAG	p.E512K	FLT4_uc003mlz.3_Missense_Mutation_p.E512K|FLT4_uc003mmb.1_Missense_Mutation_p.E45K|FLT4_uc011dgy.1_Missense_Mutation_p.E512K	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	512	Ig-like C2-type 5.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TTCTTTCCCTCCACAAACTCG	0.607									Congenital_Hereditary_Lymphedema				9	59					0	0	0.000673444	0	0
FLT4	2324	broad.mit.edu	37	5	180058777	180058777	+	Silent	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr5:180058777G>C	uc003mma.3	-	2	139	c.60C>G	c.(58-60)GGC>GGG	p.G20G	FLT4_uc003mlz.3_Silent_p.G20G|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Silent_p.G20G|FLT4_uc011dgz.1_Silent_p.G20G|FLT4_uc011dha.1_Silent_p.G20G	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	20					positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	CACTCACCAGGCCTGGGGTGG	0.622									Congenital_Hereditary_Lymphedema				3	20					0	0	6.4e-05	0	0
SERPINB6	5269	broad.mit.edu	37	6	2949198	2949198	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:2949198C>T	uc003muk.2	-	5	2674	c.679G>A	c.(679-681)GAA>AAA	p.E227K	SERPINB6_uc003mui.2_Missense_Mutation_p.E110K|SERPINB6_uc003muj.2_RNA|SERPINB6_uc003mul.2_Missense_Mutation_p.E227K|SERPINB6_uc003mum.2_Missense_Mutation_p.E227K|SERPINB6_uc003mun.2_Missense_Mutation_p.E227K|SERPINB6_uc003muo.2_Missense_Mutation_p.E227K	NM_004568	NP_004559	P35237	SPB6_HUMAN	serine (or cysteine) proteinase inhibitor, clade	227					regulation of proteolysis	centrosome|cytosol|protein complex	protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)			Drotrecogin alfa(DB00055)	ATATTCAGTTCCTTGCCAACA	0.453													57	61					0	0	0.000781405	0	0
FARS2	10667	broad.mit.edu	37	6	5613428	5613428	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:5613428C>T	uc010jnv.1	+	6	1428	c.1092C>T	c.(1090-1092)ATC>ATT	p.I364I	FARS2_uc003mwr.2_Silent_p.I364I	NM_006567	NP_006558	O95363	SYFM_HUMAN	phenylalanyl-tRNA synthetase 2 precursor	364	FDX-ACB.				phenylalanyl-tRNA aminoacylation|tRNA processing	mitochondrial matrix|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0	Ovarian(93;0.11)	all_hematologic(90;0.0104)			L-Phenylalanine(DB00120)	CGGCTGTGATCAATGATATTT	0.353													14	90					0	0	0.000422831	0	0
DSP	1832	broad.mit.edu	37	6	7583627	7583627	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:7583627C>T	uc003mxp.1	+	24	6411	c.6132C>T	c.(6130-6132)TCC>TCT	p.S2044S	DSP_uc003mxq.1_Silent_p.S1445S	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2044	Plectin 1.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GCCCAGAATCCACAGTCATGC	0.502													42	74					0	0	0.000437636	0	0
C6orf105	84830	broad.mit.edu	37	6	11735912	11735912	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:11735912G>A	uc003nab.2	-	4	683	c.395C>T	c.(394-396)ACT>ATT	p.T132I	C6orf105_uc003naa.2_RNA|C6orf105_uc011dip.1_Missense_Mutation_p.T150I	NM_032744	NP_116133	Q96IZ2	CF105_HUMAN	hypothetical protein LOC84830 isoform 2	132	Helical; (Potential).					integral to membrane					0	Ovarian(93;0.0848)|Breast(50;0.0871)	all_hematologic(90;0.135)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.193)			GAATATGAAAGTGTGCTGCAG	0.512													22	30					0	0	0.000295444	0	0
PHACTR1	221692	broad.mit.edu	37	6	13053694	13053695	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:13053694_13053695GG>TT	uc010jpc.2	+	5	680_681	c.348_349GG>TT	c.(346-351)CTGGGA>CTTTGA	p.G117*	PHACTR1_uc011dir.1_Nonsense_Mutation_p.G117*|PHACTR1_uc003nag.1_Nonsense_Mutation_p.G117*|PHACTR1_uc003nah.1_Nonsense_Mutation_p.G117*	NM_030948	NP_112210	Q9C0D0	PHAR1_HUMAN	phosphatase and actin regulator 1	117						cell junction|cytoplasm|synapse	actin binding|protein phosphatase inhibitor activity				0	Breast(50;0.0427)|Ovarian(93;0.12)	all_hematologic(90;0.122)|Lung SC(78;0.195)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.239)			TTGCCAACCTGGGAAGGATTTT	0.505													11	409					0	0	6.4e-05	0	0
CAP2	10486	broad.mit.edu	37	6	17543150	17543150	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:17543150C>T	uc003ncb.2	+	10	1328	c.1085C>T	c.(1084-1086)TCA>TTA	p.S362L	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.S336L|CAP2_uc011djb.1_Missense_Mutation_p.S298L|CAP2_uc011djc.1_Missense_Mutation_p.S250L|CAP2_uc011djd.1_Missense_Mutation_p.S102L	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	362	C-CAP/cofactor C-like.				activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			TGCGAAAAATCAACTATTCAG	0.338													48	87					0	0	0.000781405	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24533840	24533840	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:24533840C>T	uc003neg.2	+	10	1536	c.1508C>T	c.(1507-1509)CCT>CTT	p.P503L	ALDH5A1_uc003nef.2_Missense_Mutation_p.P516L	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	503					acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	GTGGAGTGCCCTTTTGGTGGA	0.527													35	133					0	0	0.000814825	0	0
GPX6	257202	broad.mit.edu	37	6	28472261	28472261	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:28472261C>T	uc011dlj.1	-	6	524	c.474G>A	c.(472-474)CCG>CCA	p.P158P	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	158					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	GATCAGAGGTCGGAGGGCAGG	0.443													23	40					0	0	0.000878237	0	0
Unknown	0	broad.mit.edu	37	6	28829563	28829563	+	RNA	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:28829563C>T	uc003nlq.2	-	2		c.624G>A								Homo sapiens cDNA FLJ30941 fis, clone FEBRA2007458.																		TCATCCTCTTCCCCAGAAAGC	0.542													3	3					0	0	6.4e-05	0	0
BAT3	7917	broad.mit.edu	37	6	31609699	31609699	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:31609699G>A	uc003nvg.3	-	16	2583	c.2269C>T	c.(2269-2271)CTT>TTT	p.L757F	BAT3_uc003nvf.3_Missense_Mutation_p.L751F|BAT3_uc003nvh.3_Missense_Mutation_p.L751F|BAT3_uc003nvi.3_Missense_Mutation_p.L751F|BAT3_uc011dnw.1_Missense_Mutation_p.L751F|BAT3_uc011dnx.1_Missense_Mutation_p.L625F	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	757					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						TGGCACAGAAGAGAAAGCAAG	0.542													54	232					0	0	0.000781405	0	0
CLIC1	1192	broad.mit.edu	37	6	31698698	31698699	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:31698698_31698699CG>AT	uc003nwr.2	-	6	910_911	c.646_647CG>AT	c.(646-648)CGG>ATG	p.R216M	DDAH2_uc003nwp.2_5'Flank|DDAH2_uc003nwq.2_5'Flank|CLIC1_uc003rje.2_Missense_Mutation_p.R216M	NM_001288	NP_001279	O00299	CLIC1_HUMAN	chloride intracellular channel 1	216	GST C-terminal.				signal transduction	brush border|chloride channel complex|cytoplasm|membrane fraction|nuclear membrane|plasma membrane|soluble fraction	protein binding|voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						GAATTCTTCCCGGGCGTAGGCA	0.579													8	481					0	0	6.4e-05	0	0
ZBTB12	221527	broad.mit.edu	37	6	31867853	31867854	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:31867853_31867854CG>AT	uc003nyd.1	-	2	1405_1406	c.1229_1230CG>AT	c.(1228-1230)TCG>TAT	p.S410Y	EHMT2_uc011don.1_5'Flank|EHMT2_uc003nxz.1_5'Flank|EHMT2_uc003nya.1_5'Flank|EHMT2_uc003nyb.1_5'Flank|C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_5'Flank	NM_181842	NP_862825	Q9Y330	ZBT12_HUMAN	zinc finger and BTB domain containing 12	410					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCGCGCTCCCGAGTGCAGGTT	0.624													12	289					0	0	6.4e-05	0	0
SKIV2L	6499	broad.mit.edu	37	6	31931314	31931314	+	Silent	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:31931314C>A	uc003nyn.1	+	14	1917	c.1528C>A	c.(1528-1530)CGA>AGA	p.R510R	SKIV2L_uc011dou.1_Silent_p.R352R|SKIV2L_uc011dov.1_Silent_p.R317R	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	510						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						GCTGGACTCCCGAGGAGCCTT	0.587													8	358					0.000673444	0.00486591	0.000673444	1	0
DOM3Z	1797	broad.mit.edu	37	6	31938769	31938770	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:31938769_31938770CG>AT	uc003nyo.1	-	2	1045_1046	c.511_512CG>AT	c.(511-513)CGG>ATG	p.R171M	DOM3Z_uc003nyp.1_Missense_Mutation_p.R171M|DOM3Z_uc003nyq.1_Translation_Start_Site|DOM3Z_uc003nyr.1_Missense_Mutation_p.R171M|DOM3Z_uc003nys.1_Missense_Mutation_p.R171M|DOM3Z_uc010jtl.1_3'UTR|STK19_uc003nyt.2_5'Flank|STK19_uc011dow.1_5'Flank|STK19_uc011dox.1_5'Flank|STK19_uc003nyv.2_5'Flank|STK19_uc003nyw.2_5'Flank|STK19_uc010jtn.1_5'Flank	NM_005510	NP_005501	O77932	DOM3Z_HUMAN	DOM-3 homolog Z	171							identical protein binding|metal ion binding|nucleotide binding				0						CCTCTGGGCCCGAGCGTTCGGT	0.589													17	675					0	0	6.4e-05	0	0
ATF6B	1388	broad.mit.edu	37	6	32083662	32083662	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:32083662G>A	uc003nzn.2	-	18	1999	c.1966C>T	c.(1966-1968)CAC>TAC	p.H656Y	TNXB_uc010jts.1_Intron|ATF6B_uc003nzm.1_Intron|ATF6B_uc003nzo.2_Missense_Mutation_p.H653Y	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	656	Lumenal (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTCTTGATGTGAATCACCCTG	0.577													87	422					0	0	0.000781405	0	0
FKBPL	63943	broad.mit.edu	37	6	32097439	32097440	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:32097439_32097440CG>AT	uc003nzr.2	-	2	388_389	c.118_119CG>AT	c.(118-120)CGA>ATA	p.R40I	ATF6B_uc003nzo.2_5'Flank|ATF6B_uc003nzn.2_5'Flank|ATF6B_uc011dpg.1_5'Flank|ATF6B_uc011dph.1_5'Flank	NM_022110	NP_071393	Q9UIM3	FKBPL_HUMAN	WAF-1/CIP1 stabilizing protein 39	40					response to radiation	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						AGGAGGGTCTCGGGGCTGCTGC	0.485													10	630					0	0	6.4e-05	0	0
RNF5	6048	broad.mit.edu	37	6	32146320	32146321	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:32146320_32146321CC>AA	uc003oaj.3	+	1	159_160	c.32_33CC>AA	c.(31-33)CCC>CAA	p.P11Q	AGPAT1_uc003oae.2_5'Flank|AGPAT1_uc011dpk.1_5'Flank|AGPAT1_uc003oaf.2_5'Flank|AGPAT1_uc003oag.2_5'Flank|AGPAT1_uc003oah.2_5'Flank|AGPAT1_uc003oai.1_5'Flank|AGPAT1_uc011dpl.1_5'Flank	NM_006913	NP_008844	Q99942	RNF5_HUMAN	ring finger protein 5	11					ER-associated misfolded protein catabolic process|protein K48-linked ubiquitination|protein K63-linked ubiquitination	endoplasmic reticulum membrane|integral to membrane|mitochondrial membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						GACGGGGGCCCCGAAGGGCCAA	0.619													10	271					0	0	6.4e-05	0	0
HLA-DRA	3122	broad.mit.edu	37	6	32411075	32411075	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:32411075C>T	uc003obh.2	+	3	523	c.442C>T	c.(442-444)CGA>TGA	p.R148*	HLA-DRA_uc003obi.2_Nonsense_Mutation_p.R123*	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	148	Ig-like C1-type.|Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						CACGTGGCTTCGAAATGGAAA	0.527									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				18	88					0	0	0.000566183	0	0
SCUBE3	222663	broad.mit.edu	37	6	35211469	35211469	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:35211469G>A	uc003okf.1	+	16	2014	c.2008G>A	c.(2008-2010)GAC>AAC	p.D670N	SCUBE3_uc003okg.1_Missense_Mutation_p.D669N|SCUBE3_uc003okh.1_Missense_Mutation_p.D557N	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	670					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						GCTCTCCTGCGACCTTTGCCC	0.622													23	49					0	0	0.000878237	0	0
BTBD9	114781	broad.mit.edu	37	6	38160295	38160295	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:38160295C>T	uc003ooa.3	-	11	2217	c.1641G>A	c.(1639-1641)GAG>GAA	p.E547E	BTBD9_uc003ony.3_Silent_p.E479E|BTBD9_uc010jwv.2_Silent_p.E508E|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Silent_p.E547E	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	547					cell adhesion						0						AGACCCTTACCTCATTTGCTG	0.448													28	31					0	0	0.00178596	0	0
DNAH8	1769	broad.mit.edu	37	6	38885052	38885052	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:38885052T>A	uc003ooe.1	+	67	10127	c.9527T>A	c.(9526-9528)CTT>CAT	p.L3176H	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GTCAGGAAACTTGCAAAACCA	0.328													8	70					0	0	0.000673444	0	0
TREML1	340205	broad.mit.edu	37	6	41121581	41121581	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:41121581C>T	uc011duc.1	-	2	335	c.291G>A	c.(289-291)GAG>GAA	p.E97E	TREML1_uc003opx.2_Silent_p.E97E|TREML1_uc011dud.1_Intron	NM_178174	NP_835468	Q86YW5	TRML1_HUMAN	triggering receptor expressed on myeloid	97	Ig-like V-type.|Extracellular (Potential).				calcium-mediated signaling|innate immune response|platelet activation	cell surface|integral to membrane|plasma membrane|platelet alpha granule	protein binding|receptor activity			breast(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					CGCCAGCATCCTCTTCCTGCA	0.602													12	55					0	0	0.000219431	0	0
MDFI	4188	broad.mit.edu	37	6	41613910	41613910	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:41613910C>T	uc003oqp.3	+	4	452	c.123C>T	c.(121-123)TCC>TCT	p.S41S	MDFI_uc003oqq.3_Silent_p.S41S|MDFI_uc010jxn.2_Silent_p.S41S	NM_005586	NP_005577	Q99750	MDFI_HUMAN	MyoD family inhibitor	41					cytoplasmic sequestering of transcription factor|dorsal/ventral axis specification|negative regulation of DNA binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of Wnt receptor signaling pathway	cytoplasm|nucleus					0	Ovarian(28;0.0327)|Colorectal(47;0.121)		Colorectal(64;0.0123)|COAD - Colon adenocarcinoma(64;0.0264)|KIRC - Kidney renal clear cell carcinoma(1;0.138)			TAACAGGATCCACTCACCCTG	0.622													13	55					0	0	0.000422831	0	0
ABCC10	89845	broad.mit.edu	37	6	43416634	43416634	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:43416634C>T	uc003ouy.1	+	19	4190	c.3975C>T	c.(3973-3975)ATC>ATT	p.I1325I	ABCC10_uc003ouz.1_Silent_p.I1297I|ABCC10_uc010jyo.1_Silent_p.I431I	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	1325	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			AGTTGGCTATCATCCCCCAGG	0.562													24	34					0	0	0.00106085	0	0
ENPP5	59084	broad.mit.edu	37	6	46135640	46135640	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:46135640C>T	uc003oxz.1	-	2	568	c.360G>A	c.(358-360)GCG>GCA	p.A120A	ENPP5_uc003oya.1_Silent_p.A120A|ENPP5_uc011dvz.1_Silent_p.A26A|ENPP5_uc010jzc.1_Silent_p.A120A	NM_021572	NP_067547	Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	120						extracellular region|integral to membrane	hydrolase activity				0						ATATTGGTGTCGCTTCTTCCC	0.408													10	115					0	0	0.000442599	0	0
ARMC2	84071	broad.mit.edu	37	6	109286209	109286209	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:109286209G>C	uc003pss.3	+	17	2486	c.2312G>C	c.(2311-2313)GGT>GCT	p.G771A	ARMC2_uc011eao.1_Missense_Mutation_p.G606A	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	771	ARM 12.						binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		AGAGATTTGGGTCCTACTGAT	0.343													63	151					0	0	0.000781405	0	0
UTRN	7402	broad.mit.edu	37	6	144759886	144759887	+	Missense_Mutation	DNP	AC	TT	TT	rs114118949	by1000genomes	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:144759886_144759887AC>TT	uc003qkt.2	+	11	1339_1340	c.1247_1248AC>TT	c.(1246-1248)CAC>CTT	p.H416L	UTRN_uc010khq.1_Missense_Mutation_p.H416L	NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	416	Interaction with SYNM.|Spectrin 2.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GACAGGCTGCACGATGTGCTGA	0.52													16	48					0	0	6.4e-05	0	0
SYNE1	23345	broad.mit.edu	37	6	152644784	152644785	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:152644784_152644785GT>AA	uc010kiw.2	-	82	16347_16348	c.15745_15746AC>TT	c.(15745-15747)ACT>TTT	p.T5249F	SYNE1_uc003qot.3_Missense_Mutation_p.T5178F|SYNE1_uc003qou.3_Missense_Mutation_p.T5249F|SYNE1_uc010kiz.2_Missense_Mutation_p.T1004F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5249	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTCAAGAAGAGTTAAGAGCTCT	0.495										HNSCC(10;0.0054)			28	32					0	0	6.4e-05	0	0
SMOC2	64094	broad.mit.edu	37	6	168910607	168910607	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:168910607G>A	uc003qws.1	+	2	117	c.97G>A	c.(97-99)GAT>AAT	p.D33N	SMOC2_uc003qwr.1_Missense_Mutation_p.D33N	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	33					signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		TTTGAGAGTGGATCAAGATAA	0.458													17	47					0	0	0.00152264	0	0
PHF10	55274	broad.mit.edu	37	6	170110373	170110373	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:170110373G>A	uc011egy.1	-	9	1151	c.1072C>T	c.(1072-1074)CCC>TCC	p.P358S	PHF10_uc011egz.1_Missense_Mutation_p.P356S|PHF10_uc011eha.1_Missense_Mutation_p.P209S	NM_018288	NP_060758	Q8WUB8	PHF10_HUMAN	PHD finger protein 10 isoform a	358					nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	npBAF complex	zinc ion binding			urinary_tract(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.4e-21)|BRCA - Breast invasive adenocarcinoma(81;1.4e-07)|GBM - Glioblastoma multiforme(31;0.00176)		GAACGTTTGGGACCATCTTTT	0.473													29	72					0	0	0.000692331	0	0
IQCE	23288	broad.mit.edu	37	7	2623876	2623876	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:2623876C>T	uc003smo.3	+	11	965	c.781C>T	c.(781-783)CGT>TGT	p.R261C	IQCE_uc010ksm.1_Missense_Mutation_p.R261C|IQCE_uc003sml.1_Missense_Mutation_p.R261C|IQCE_uc011jvy.1_Missense_Mutation_p.R245C|IQCE_uc011jvz.1_Missense_Mutation_p.R196C|IQCE_uc003smk.3_Missense_Mutation_p.R245C|IQCE_uc003smn.3_Missense_Mutation_p.R196C	NM_152558	NP_689771	Q6IPM2	IQCE_HUMAN	IQ motif containing E isoform 1	261	Potential.										0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.23e-13)		ACAGGTGCATCGTCTCCAGAC	0.473													39	117					0	0	0.000374591	0	0
RBAK	57786	broad.mit.edu	37	7	5105071	5105071	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:5105071C>T	uc010kss.1	+	6	2308	c.1984C>T	c.(1984-1986)CAG>TAG	p.Q662*	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Nonsense_Mutation_p.Q662*	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	662	C2H2-type 15.|Interaction with AR.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		AGTCTTTTCTCAGAAGTCATA	0.418													18	97					0	0	0.00121646	0	0
PMS2	5395	broad.mit.edu	37	7	6017358	6017358	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:6017358G>A	uc003spl.2	-	14	2393	c.2306C>T	c.(2305-2307)TCC>TTC	p.S769F	PMS2_uc003spj.2_Missense_Mutation_p.S663F|PMS2_uc003spk.2_Missense_Mutation_p.S634F|PMS2_uc011jwl.1_Missense_Mutation_p.S634F|PMS2_uc010ktg.2_Missense_Mutation_p.S458F|PMS2_uc010kte.2_Missense_Mutation_p.S368F|PMS2_uc010ktf.1_Intron	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	769					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		AGTTGGCAAGGAAATCAGTTT	0.463			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				17	28					0	0	0.000375601	0	0
DGKB	1607	broad.mit.edu	37	7	14647102	14647102	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:14647102G>A	uc003ssz.2	-	16	1580	c.1393C>T	c.(1393-1395)CCT>TCT	p.P465S	DGKB_uc011jxt.1_Missense_Mutation_p.P446S|DGKB_uc003sta.2_Missense_Mutation_p.P465S|DGKB_uc011jxu.1_Missense_Mutation_p.P464S	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	465	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	ACCTGACGAGGATTTAATAGA	0.269													10	43					0	0	0.000151284	0	0
EVX1	2128	broad.mit.edu	37	7	27284924	27284924	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:27284924G>A	uc003szd.1	+	2	1170	c.684_splice	c.e2+1	p.K228_splice	EVX1_uc011jzn.1_Splice_Site_p.K46_splice|EVX1_uc010kuy.1_Splice_Site	NM_001989	NP_001980	P49640	EVX1_HUMAN	even-skipped homeobox 1							nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						CACCATCAAGGTATGCGGGGT	0.607													20	44					0	0	0.00047179	0	0
IKZF1	10320	broad.mit.edu	37	7	50459558	50459558	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:50459558C>T	uc003tow.3	+	8	1015	c.847C>T	c.(847-849)CTT>TTT	p.L283F	IKZF1_uc003tox.3_Missense_Mutation_p.L241F|IKZF1_uc003toy.3_Missense_Mutation_p.L241F|IKZF1_uc011kck.1_Missense_Mutation_p.L196F|IKZF1_uc003toz.3_Missense_Mutation_p.L253F|IKZF1_uc010kyx.2_Intron|IKZF1_uc003tpa.3_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	283					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				TCAGAAATTTCTTGGTAAGAG	0.408			D		ALL								4	16					0	0	0.00024832	0	0
PSPH	5723	broad.mit.edu	37	7	56079562	56079562	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:56079562C>G	uc003trg.2	-	7	934	c.571G>C	c.(571-573)GAT>CAT	p.D191H	PSPH_uc003trh.2_Missense_Mutation_p.D191H|PSPH_uc003tri.2_Missense_Mutation_p.D191H|PSPH_uc003trj.2_Missense_Mutation_p.D220H	NM_004577	NP_004568	P78330	SERB_HUMAN	phosphoserine phosphatase	191					L-serine biosynthetic process	cytoplasm	calcium ion binding|magnesium ion binding|phosphoserine phosphatase activity|protein homodimerization activity			ovary(1)|skin(1)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			ATGAAAGCATCCTAAGAAGGA	0.264													13	54					0	0	0.000151284	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72336880	72336880	+	RNA	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:72336880C>T	uc010lal.1	-	1		c.2776G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						AATCCCACTTCCCCCGCTGTC	0.443													20	45					0	0	0.00121646	0	0
GTF2IRD2	84163	broad.mit.edu	37	7	74211427	74211427	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:74211427G>A	uc003ubd.1	-	16	2608	c.2424C>T	c.(2422-2424)ACC>ACT	p.T808T	GTF2IRD2_uc010lbt.1_Silent_p.T355T	NM_173537	NP_775808	Q86UP8	GTD2A_HUMAN	GTF2I repeat domain containing 2	808					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ccaatttcagggtgggaaagt	0													50	149					0	0	0.000781405	0	0
HGF	3082	broad.mit.edu	37	7	81381528	81381528	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:81381528C>T	uc003uhl.2	-	5	698	c.533G>A	c.(532-534)CGA>CAA	p.R178Q	HGF_uc003uhm.2_Missense_Mutation_p.R173Q|HGF_uc003uhn.1_Missense_Mutation_p.R178Q|HGF_uc003uho.1_Missense_Mutation_p.R173Q|HGF_uc003uhp.2_Missense_Mutation_p.R178Q	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	178	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TCGAGGATTTCGACAGTAGTT	0.418													7	35					0	0	0.000157383	0	0
PCLO	27445	broad.mit.edu	37	7	82581191	82581191	+	Silent	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:82581191A>G	uc003uhx.2	-	5	9367	c.9078T>C	c.(9076-9078)ACT>ACC	p.T3026T	PCLO_uc003uhv.2_Silent_p.T3026T|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2957					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTCTCCCTGAAGTCAGATCTA	0.388													8	42					0	0	0.000157383	0	0
PCLO	27445	broad.mit.edu	37	7	82595332	82595332	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:82595332C>T	uc003uhx.2	-	4	4061	c.3772G>A	c.(3772-3774)GAA>AAA	p.E1258K	PCLO_uc003uhv.2_Missense_Mutation_p.E1258K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1197					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTCTGTTCTTCTGGGGCTGAT	0.413													47	170					0	0	0.000781405	0	0
GRM3	2913	broad.mit.edu	37	7	86394822	86394822	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:86394822G>A	uc003uid.2	+	2	1460	c.361G>A	c.(361-363)GAT>AAT	p.D121N	GRM3_uc010lef.2_Missense_Mutation_p.D119N|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	121	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GACAAAAGTGGATGAAGCTGA	0.438													5	28					0	0	0.000602214	0	0
AKAP9	10142	broad.mit.edu	37	7	91630784	91630784	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:91630784T>C	uc003ulg.2	+	8	1778	c.1553T>C	c.(1552-1554)CTA>CCA	p.L518P	AKAP9_uc003ule.2_Missense_Mutation_p.L530P|AKAP9_uc003ulf.2_Missense_Mutation_p.L518P|AKAP9_uc003uli.2_Missense_Mutation_p.L143P	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	530	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GAACTAGGACTAATTTTAGAA	0.343			T	BRAF	papillary thyroid								7	79					0	0	0.000157383	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764874	92764874	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:92764874C>T	uc003umh.1	-	5	1627	c.411G>A	c.(409-411)ATG>ATA	p.M137I	SAMD9L_uc003umj.1_Missense_Mutation_p.M137I|SAMD9L_uc003umi.1_Missense_Mutation_p.M137I|SAMD9L_uc010lfb.1_Missense_Mutation_p.M137I|SAMD9L_uc003umk.1_Missense_Mutation_p.M137I|SAMD9L_uc010lfc.1_Missense_Mutation_p.M137I|SAMD9L_uc010lfd.1_Missense_Mutation_p.M137I|SAMD9L_uc011khx.1_Missense_Mutation_p.M128I	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	137										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CATTTTCTTTCATAAGAATTG	0.318													11	38					0	0	0.000978159	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94917927	94917927	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:94917927C>T	uc003unp.2	+	15	3263	c.2981C>T	c.(2980-2982)TCT>TTT	p.S994F	PPP1R9A_uc010lfj.2_Missense_Mutation_p.S1270F|PPP1R9A_uc011kif.1_Missense_Mutation_p.S1192F|PPP1R9A_uc003unq.2_Intron|PPP1R9A_uc011kig.1_Missense_Mutation_p.S986F|PPP1R9A_uc003unr.2_Missense_Mutation_p.S283F	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	994	Interacts with TGN38 (By similarity).|SAM.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			CAGCAGGTTTCTCACTGGTTA	0.448										HNSCC(28;0.073)			18	62					0	0	0.000958276	0	0
PON1	5444	broad.mit.edu	37	7	94937327	94937327	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:94937327C>T	uc003uns.2	-	6	791	c.694G>A	c.(694-696)GGC>AGC	p.G232S	PON1_uc011kih.1_Missense_Mutation_p.G232S	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	232					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	ACATACTTGCCATCGGGTGAA	0.363													9	27					0	0	0.000442599	0	0
DLX5	1749	broad.mit.edu	37	7	96651668	96651668	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:96651668G>A	uc003uon.2	-	2	577	c.369C>T	c.(367-369)ACC>ACT	p.T123T	DLX5_uc011kim.1_Silent_p.T123T	NM_005221	NP_005212	P56178	DLX5_HUMAN	distal-less homeobox 5	123					cell proliferation|endochondral ossification|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					CCTCGGGCTCGGTCACTTCTT	0.448													11	64					0	0	0.000673444	0	0
TRRAP	8295	broad.mit.edu	37	7	98592250	98592250	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:98592250C>T	uc003upp.2	+	66	10255	c.10046C>T	c.(10045-10047)TCC>TTC	p.S3349F	TRRAP_uc011kis.1_Missense_Mutation_p.S3320F|TRRAP_uc003upr.2_Missense_Mutation_p.S3055F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3349					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			AAATGTTACTCCGTGGCGTTT	0.537													41	138					0	0	0.000589545	0	0
MUC17	140453	broad.mit.edu	37	7	100677404	100677404	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:100677404C>A	uc003uxp.1	+	3	2760	c.2707C>A	c.(2707-2709)CGT>AGT	p.R903S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	903	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|13.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TACTGAAGCCCGTTCGTCTCC	0.527													8	291					0.000442599	0.00320505	0.000442599	1	0
PIK3CG	5294	broad.mit.edu	37	7	106508805	106508805	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:106508805G>A	uc003vdv.3	+	2	884	c.799G>A	c.(799-801)GAA>AAA	p.E267K	PIK3CG_uc003vdu.2_Missense_Mutation_p.E267K|PIK3CG_uc003vdw.2_Missense_Mutation_p.E267K	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	267					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						AAGCCAAAGCGAACAGGATTT	0.557													11	44					0	0	0.000978159	0	0
DOCK4	9732	broad.mit.edu	37	7	111430623	111430623	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:111430623G>A	uc003vfx.2	-	31	3474	c.3205C>T	c.(3205-3207)CCC>TCC	p.P1069S	DOCK4_uc011kmm.1_5'Flank|DOCK4_uc003vfw.2_Missense_Mutation_p.P510S|DOCK4_uc003vfy.2_Missense_Mutation_p.P1105S	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1069					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TCTAGGAAGGGGCCAATCAGG	0.398													5	28					0	0	8.12818e-05	0	0
MET	4233	broad.mit.edu	37	7	116380009	116380009	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:116380009G>A	uc003vij.2	+	4	1585	c.1398G>A	c.(1396-1398)GTG>GTA	p.V466V	MET_uc010lkh.2_Silent_p.V466V|MET_uc011knc.1_Silent_p.V466V|MET_uc011knd.1_Silent_p.V466V|MET_uc011kne.1_Silent_p.V466V|MET_uc011knf.1_Silent_p.V466V|MET_uc011kng.1_Silent_p.V466V|MET_uc011knh.1_Silent_p.V466V|MET_uc011kni.1_Silent_p.V466V|MET_uc011knj.1_Silent_p.V36V|MET_uc011kna.1_Silent_p.V466V|MET_uc011knb.1_Silent_p.V466V	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	466	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TTTAGGTTGTGGTTTCTCGAT	0.373			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				44	106					0	0	0.000781405	0	0
CFTR	1080	broad.mit.edu	37	7	117243607	117243607	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:117243607G>A	uc003vjd.2	+	17	2811	c.2679G>A	c.(2677-2679)GGG>GGA	p.G893G	CFTR_uc011knq.1_Silent_p.G299G	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	893	ABC transmembrane type-1 2.|Extracellular (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AAGACAAAGGGAATAGTACTC	0.378									Cystic_Fibrosis				9	32					0	0	0.000442599	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121651908	121651908	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:121651908C>T	uc003vjy.2	+	12	3203	c.2808C>T	c.(2806-2808)TCC>TCT	p.S936S	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	936	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						ATGAGGGCTCCCAACACATCT	0.453													22	66					0	0	0.00047179	0	0
CADPS2	93664	broad.mit.edu	37	7	122091462	122091462	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:122091462A>G	uc010lkp.2	-	14	2417	c.2254T>C	c.(2254-2256)TCT>CCT	p.S752P	CADPS2_uc011knx.1_Missense_Mutation_p.S123P|CADPS2_uc003vkg.3_Missense_Mutation_p.S449P|CADPS2_uc010lkq.2_Missense_Mutation_p.S749P	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	752					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						AAAAGGGAAGAGAGTCTCTCT	0.299													5	25					0	0	8.12818e-05	0	0
CPA2	1358	broad.mit.edu	37	7	129909563	129909563	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:129909563C>T	uc003vpq.2	+	3	227	c.208C>T	c.(208-210)CCC>TCC	p.P70S	CPA2_uc011kpc.1_Missense_Mutation_p.P70S	NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	70					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					CGTCCGAGTTCCCTTCGTCAA	0.498													23	45					0	0	0.000586117	0	0
AKR1B10	57016	broad.mit.edu	37	7	134221899	134221899	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:134221899G>A	uc003vrr.2	+	6	969	c.649G>A	c.(649-651)GAT>AAT	p.D217N		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	217	NADP.				cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						GGGCTCTCCGGATAGACCTTG	0.473													6	10					0	0	0.000978159	0	0
PARP12	64761	broad.mit.edu	37	7	139728475	139728475	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:139728475G>A	uc003vvl.1	-	9	2309	c.1435C>T	c.(1435-1437)CCA>TCA	p.P479S	PARP12_uc003vvk.1_Missense_Mutation_p.P265S|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	479						nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					TTCGGGCCTGGAAACTTGGTA	0.488													3	5					0	0	0.00024832	0	0
TRPV6	55503	broad.mit.edu	37	7	142571240	142571240	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:142571240C>G	uc003wbx.1	-	13	1965	c.1749G>C	c.(1747-1749)TGG>TGC	p.W583C	TRPV6_uc003wbw.1_Missense_Mutation_p.W369C|TRPV6_uc010lou.1_Missense_Mutation_p.W454C	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	583	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GGGCCACTCGCCAGTGAGTGT	0.597													24	72					0	0	0.00047179	0	0
KEL	3792	broad.mit.edu	37	7	142639971	142639971	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:142639971G>A	uc003wcb.2	-	17	2142	c.1932C>T	c.(1930-1932)ATC>ATT	p.I644I		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	644	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					CCTGCAGCGCGATGGCTAGCC	0.488													17	64					0	0	0.00121646	0	0
PIP	5304	broad.mit.edu	37	7	142836720	142836720	+	Silent	SNP	C	T	T	rs147384445	byFrequency	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:142836720C>T	uc003wcf.1	+	4	462	c.426C>T	c.(424-426)ATC>ATT	p.I142I		NM_002652	NP_002643	P12273	PIP_HUMAN	prolactin-induced protein precursor	142						extracellular region	actin binding			ovary(1)	1	Melanoma(164;0.059)	Ovarian(593;2.82e-05)|Breast(660;0.012)		BRCA - Breast invasive adenocarcinoma(188;0.0026)|LUSC - Lung squamous cell carcinoma(290;0.0733)|Lung(243;0.08)		CTATTGAAATCCTAAAGGTAG	0.413													30	135					0	0	0.000409698	0	0
EPHA1	2041	broad.mit.edu	37	7	143095466	143095466	+	Missense_Mutation	SNP	C	T	T	rs143535859	byFrequency	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:143095466C>T	uc003wcz.2	-	7	1499	c.1412G>A	c.(1411-1413)CGG>CAG	p.R471Q		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	471	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				GCTTCGGGGCCGGGACCCCGC	0.602													15	38					0	0	0.000219431	0	0
FAM115C	285966	broad.mit.edu	37	7	143421773	143421773	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:143421773C>T	uc003wdf.2	+	7	2571	c.2488C>T	c.(2488-2490)CTG>TTG	p.L830L	FAM115C_uc003wdg.2_Silent_p.L549L|FAM115C_uc011ktk.1_Silent_p.L830L|FAM115C_uc003wdh.2_Silent_p.L830L|FAM115C_uc011ktm.1_Silent_p.L830L|uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron|FAM115C_uc011ktt.1_Silent_p.L726L|FAM115C_uc003wdi.1_Silent_p.L549L	NM_001130025	NP_001123497	A6NFQ2	F115C_HUMAN	hypothetical protein LOC285966 isoform A	830											0						ATGGACAGCCCTGGAAACATA	0.577													17	24					0	0	0.00074312	0	0
OR2F2	135948	broad.mit.edu	37	7	143633249	143633249	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:143633249C>T	uc011ktv.1	+	1	924	c.924C>T	c.(922-924)TTC>TTT	p.F308F		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					TAGAGAAATTCTCTGGGTTAA	0.423													12	27					0	0	0.000219431	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146471470	146471470	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:146471470G>A	uc003weu.1	+	2	721	c.205G>A	c.(205-207)GGA>AGA	p.G69R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	69	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AAACAAGAGAGGAGGTAAGCC	0.388										HNSCC(39;0.1)			12	35					0	0	0.00136819	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147092753	147092753	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:147092753C>A	uc003weu.1	+	10	2067	c.1551C>A	c.(1549-1551)TTC>TTA	p.F517L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	517	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AGCCTTCATTCCAAGGATGCA	0.423										HNSCC(39;0.1)			17	64					2.94398e-08	2.163e-07	0.000958276	1	0
CSMD1	64478	broad.mit.edu	37	8	3165261	3165261	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:3165261G>A	uc011kwk.1	-	25	4299	c.3909C>T	c.(3907-3909)CTC>CTT	p.L1303L	CSMD1_uc011kwj.1_Silent_p.L695L|CSMD1_uc003wqe.2_Silent_p.L459L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1303	Extracellular (Potential).|CUB 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGTGCAGTGGAGGTTGTTGT	0.453													57	83					0	0	0.000781405	0	0
GATA4	2626	broad.mit.edu	37	8	11607646	11607646	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:11607646C>T	uc003wuc.2	+	4	1364	c.810C>T	c.(808-810)TCC>TCT	p.S270S	GATA4_uc003wub.1_Silent_p.S64S|GATA4_uc011kxc.1_Silent_p.S271S	NM_002052	NP_002043	P43694	GATA4_HUMAN	GATA binding protein 4	270					atrial septum primum morphogenesis|atrial septum secundum morphogenesis|blood coagulation|cardiac right ventricle morphogenesis|cell-cell signaling|embryonic foregut morphogenesis|embryonic heart tube anterior/posterior pattern formation|endocardial cushion development|endoderm development|heart looping|intestinal epithelial cell differentiation|male gonad development|positive regulation of angiogenesis|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|response to drug|transcription from RNA polymerase II promoter|ventricular septum development	nucleoplasm	activating transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(15;0.0839)		STAD - Stomach adenocarcinoma(15;0.00225)	COAD - Colon adenocarcinoma(149;0.199)		TGGGCCTCTCCTGTGCCAACT	0.627													21	28					0	0	0.00047179	0	0
USP17L2	377630	broad.mit.edu	37	8	11994895	11994895	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:11994895G>A	uc003wvc.1	-	1	1375	c.1375C>T	c.(1375-1377)CTG>TTG	p.L459L	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	459					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						TTGGGAGGCAGGGTACCTTCG	0.468													19	107					0	0	0.00074312	0	0
SLC18A1	6570	broad.mit.edu	37	8	20028641	20028641	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:20028641G>C	uc011kyq.1	-	9	1302	c.831C>G	c.(829-831)ATC>ATG	p.I277M	SLC18A1_uc003wzl.2_Missense_Mutation_p.I64M|SLC18A1_uc003wzm.2_Missense_Mutation_p.I277M|SLC18A1_uc011kyr.1_Missense_Mutation_p.I277M|SLC18A1_uc003wzn.2_Missense_Mutation_p.I277M|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.I277M	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	277	Helical; (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		AAGGCTGTAGGATGCAAAGCT	0.493													47	40					0	0	0.000781405	0	0
LOXL2	4017	broad.mit.edu	37	8	23160888	23160888	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:23160888A>G	uc003xdh.1	-	11	2242	c.1903T>C	c.(1903-1905)TTC>CTC	p.F635L	LOXL2_uc010lty.1_Missense_Mutation_p.F174L	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	635	Lysyl-oxidase like.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		TAGTGGGTGAACACCTCCATG	0.567													24	38					0	0	0.000720815	0	0
GOT1L1	137362	broad.mit.edu	37	8	37795255	37795255	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:37795255G>A	uc011lbj.1	-	3	410	c.310C>T	c.(310-312)CAC>TAC	p.H104Y		NM_152413	NP_689626	Q8NHS2	AATC2_HUMAN	glutamic-oxaloacetic transaminase 1-like 1	104					biosynthetic process|cellular amino acid metabolic process	cytoplasm	pyridoxal phosphate binding|transaminase activity			ovary(1)	1	Colorectal(12;0.00627)	Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;1.37e-11)			CCAACAGTGTGTACACCCCCT	0.328													9	8					0	0	0.000442599	0	0
RP1	6101	broad.mit.edu	37	8	55539794	55539794	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:55539794C>T	uc003xsd.1	+	4	3500	c.3352C>T	c.(3352-3354)CAT>TAT	p.H1118Y	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1118					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGTTCCCTTTCATTCTGCAAT	0.423													32	30					0	0	0.001512	0	0
FAM110B	90362	broad.mit.edu	37	8	59059713	59059713	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:59059713C>T	uc003xtj.1	+	5	1804	c.924C>T	c.(922-924)TTC>TTT	p.F308F		NM_147189	NP_671722	Q8TC76	F110B_HUMAN	hypothetical protein LOC90362	308						microtubule organizing center|mitochondrion|nucleus				large_intestine(1)	1		all_epithelial(80;0.025)|all_lung(136;0.0274)|Lung NSC(129;0.0355)				CCCTCAACTTCCGCAGCGCAA	0.488													17	47					0	0	0.000422831	0	0
CHD7	55636	broad.mit.edu	37	8	61654698	61654698	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:61654698C>T	uc003xue.2	+	2	1184	c.707C>T	c.(706-708)TCC>TTC	p.S236F		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	236					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GGCCACTTGTCCCACGTGCCC	0.572													17	57					0	0	0.00152264	0	0
CLVS1	157807	broad.mit.edu	37	8	62366804	62366804	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:62366804G>A	uc003xuh.2	+	4	1059	c.735G>A	c.(733-735)AGG>AGA	p.R245R	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Silent_p.R245R	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	245	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						ACAAGACCAGGAAACGGGTAA	0.353													30	92					0	0	0.000339439	0	0
ASPH	444	broad.mit.edu	37	8	62479730	62479730	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:62479730G>A	uc003xuj.2	-	17	1566	c.1297C>T	c.(1297-1299)CTA>TTA	p.L433L	ASPH_uc011leg.1_Silent_p.L404L|ASPH_uc003xuo.2_Silent_p.L414L	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	433	Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	ATCTTACCTAGAAATTGTTGC	0.453													4	42					0	0	0.00024832	0	0
VCPIP1	80124	broad.mit.edu	37	8	67577010	67577010	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:67577010C>G	uc003xwn.2	-	1	2443	c.2184G>C	c.(2182-2184)CAG>CAC	p.Q728H	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	728					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			TTTTCCGTTTCTGCATTACAG	0.413													12	84					0	0	0.000978159	0	0
CPA6	57094	broad.mit.edu	37	8	68430177	68430177	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:68430177C>T	uc003xxq.3	-	3	554	c.298G>A	c.(298-300)GAA>AAA	p.E100K	CPA6_uc003xxr.3_Intron|CPA6_uc003xxs.2_Missense_Mutation_p.E100K	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	100					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			ATGTTGGCTTCCTGTAAGAAG	0.413													12	72					0	0	0.000151284	0	0
KCNB2	9312	broad.mit.edu	37	8	73480163	73480163	+	Missense_Mutation	SNP	G	A	A	rs140028668		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:73480163G>A	uc003xzb.2	+	2	782	c.194G>A	c.(193-195)CGA>CAA	p.R65Q		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	65	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GGGAAGCTTCGAGACTGCAAC	0.552													6	97					0	0	8.12818e-05	0	0
CA2	760	broad.mit.edu	37	8	86389382	86389382	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:86389382C>T	uc003ydk.2	+	6	721	c.541C>T	c.(541-543)CGT>TGT	p.R181C		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	181					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	CTTCGATCCTCGTGGCCTCCT	0.507													19	148					0	0	0.00152264	0	0
SLC7A13	157724	broad.mit.edu	37	8	87242418	87242418	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:87242418C>T	uc003ydq.1	-	1	187	c.89G>A	c.(88-90)GGA>GAA	p.G30E	SLC7A13_uc003ydr.1_Missense_Mutation_p.G30E	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	30	Helical; Name=1; (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						CACAAAAATTCCTGCACCAAT	0.453													7	83					0	0	0.000274275	0	0
ESRP1	54845	broad.mit.edu	37	8	95653560	95653561	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:95653560_95653561CG>AT	uc003ygq.3	+	1	197_198	c.14_15CG>AT	c.(13-15)CCG>CAT	p.P5H	ESRP1_uc003ygr.3_Missense_Mutation_p.P5H|ESRP1_uc003ygs.3_Missense_Mutation_p.P5H|ESRP1_uc003ygt.3_Missense_Mutation_p.P5H|ESRP1_uc003ygu.3_Missense_Mutation_p.P5H	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	5					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						ACGGCCTCTCCGGATTACTTGG	0.584													9	389					0	0	6.4e-05	0	0
ESRP1	54845	broad.mit.edu	37	8	95677408	95677408	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:95677408C>T	uc003ygq.3	+	9	1098	c.915C>T	c.(913-915)TTC>TTT	p.F305F	ESRP1_uc003ygr.3_Silent_p.F305F|ESRP1_uc003ygs.3_Silent_p.F305F|ESRP1_uc003ygt.3_Silent_p.F305F|ESRP1_uc003ygu.3_Silent_p.F305F|ESRP1_uc003ygv.2_Silent_p.F145F|ESRP1_uc003ygw.2_Silent_p.F145F	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	305					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						GTGAAGATTTCCTTAAAATTG	0.358													55	568					0	0	0.000781405	0	0
C8orf38	137682	broad.mit.edu	37	8	96044253	96044254	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:96044253_96044254CC>AA	uc003yhj.2	+	2	244_245	c.228_229CC>AA	c.(226-231)TCCCTG>TCAATG	p.L77M	C8orf38_uc003yhe.1_RNA|C8orf38_uc003yhf.2_Translation_Start_Site|C8orf38_uc011lgs.1_RNA|C8orf38_uc003yhi.2_Missense_Mutation_p.L25M|C8orf38_uc003yhk.2_RNA|C8orf38_uc003yhl.2_Translation_Start_Site	NM_152416	NP_689629	Q330K2	CH038_HUMAN	hypothetical protein LOC137682 precursor	77					biosynthetic process	mitochondrion	transferase activity				0	Breast(36;3.32e-06)					ATTTATGCTCCCTGCTGCTCCC	0.396													14	588					0	0	6.4e-05	0	0
POP1	10940	broad.mit.edu	37	8	99168505	99168505	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:99168505C>T	uc003yij.3	+	15	2385	c.2285C>T	c.(2284-2286)TCC>TTC	p.S762F	POP1_uc011lgv.1_Missense_Mutation_p.S762F|POP1_uc003yik.2_Missense_Mutation_p.S762F	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	762					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			GTGGGCACATCCATAGAGCAC	0.517													59	69					0	0	0.000781405	0	0
CSMD3	114788	broad.mit.edu	37	8	113256643	113256643	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:113256643C>T	uc003ynu.2	-	65	10541	c.10382G>A	c.(10381-10383)GGA>GAA	p.G3461E	CSMD3_uc003yns.2_Missense_Mutation_p.G2663E|CSMD3_uc003ynt.2_Missense_Mutation_p.G3421E|CSMD3_uc011lhx.1_Missense_Mutation_p.G3292E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3461	Extracellular (Potential).|Sushi 28.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GGGAACTTTTCCAGTCCAGGT	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			11	29					0	0	0.000978159	0	0
GSDMC	56169	broad.mit.edu	37	8	130789704	130789704	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:130789704C>T	uc003ysr.2	-	2	1012	c.130G>A	c.(130-132)GAT>AAT	p.D44N		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	44						mitochondrion				ovary(2)|skin(1)	3						GAACGAGAATCCTTCTTCTTT	0.398													9	77					0	0	0.000442599	0	0
ZFAT	57623	broad.mit.edu	37	8	135577646	135577646	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:135577646G>A	uc003yup.2	-	11	3081	c.2906C>T	c.(2905-2907)ACG>ATG	p.T969M	ZFAT_uc011ljj.1_Missense_Mutation_p.T88M|ZFAT_uc003yun.2_Missense_Mutation_p.T957M|ZFAT_uc003yuo.2_Missense_Mutation_p.T957M|ZFAT_uc010meh.2_Missense_Mutation_p.T957M|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.T957M|ZFAT_uc010mej.2_Missense_Mutation_p.T907M	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	969	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			GTCACACACCGTGCACTTAAA	0.567													7	63					0	0	0.000157383	0	0
FLJ43860	389690	broad.mit.edu	37	8	142506556	142506556	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:142506556C>T	uc003ywi.2	-	2	207	c.126G>A	c.(124-126)ATG>ATA	p.M42I	FLJ43860_uc011ljs.1_5'Flank|FLJ43860_uc010meu.1_5'Flank	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	42							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GGTGTACCTTCATGCAAGATG	0.567													18	25					0	0	0.000566183	0	0
EPPK1	83481	broad.mit.edu	37	8	144941965	144941965	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:144941965G>A	uc003zaa.1	-	1	5470	c.5457C>T	c.(5455-5457)GCC>GCT	p.A1819A		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1819						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCCCACTCTGGGCTCCATACT	0.547													79	82					0	0	0.000781405	0	0
DGAT1	8694	broad.mit.edu	37	8	145540765	145540765	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr8:145540765A>G	uc003zbv.3	-	15	1436	c.1168T>C	c.(1168-1170)TAC>CAC	p.Y390H	DGAT1_uc010mfv.2_Intron	NM_012079	NP_036211	O75907	DGAT1_HUMAN	diacylglycerol O-acyltransferase 1	390	Lumenal (Potential).				triglyceride biosynthetic process|very-low-density lipoprotein particle assembly	endoplasmic reticulum membrane|integral to membrane	diacylglycerol O-acyltransferase activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;7.67e-40)|all cancers(56;7.88e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			ATGGGCTTGTAGAAGTGTCTG	0.592													36	42					0	0	0.000814825	0	0
RFX3	5991	broad.mit.edu	37	9	3248151	3248151	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:3248151C>T	uc003zhr.2	-	16	2161	c.1849G>A	c.(1849-1851)GCT>ACT	p.A617T	RFX3_uc010mhd.2_Missense_Mutation_p.A617T|RFX3_uc003zhs.1_Missense_Mutation_p.A617T	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	617					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		AAGCTAGCAGCACTGCGTAAG	0.423													6	27					0	0	8.12818e-05	0	0
KDM4C	23081	broad.mit.edu	37	9	6984218	6984218	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:6984218G>T	uc003zkh.2	+	10	1748	c.1168G>T	c.(1168-1170)GAA>TAA	p.E390*	KDM4C_uc010mhu.2_Nonsense_Mutation_p.E412*|KDM4C_uc011lmi.1_Nonsense_Mutation_p.E390*|KDM4C_uc011lmj.1_RNA|KDM4C_uc003zkg.2_Nonsense_Mutation_p.E390*|KDM4C_uc011lmk.1_Nonsense_Mutation_p.E209*|KDM4C_uc011lml.1_Nonsense_Mutation_p.E77*	NM_015061	NP_055876	Q9H3R0	KDM4C_HUMAN	jumonji domain containing 2C isoform 1	390					positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	nuclear chromatin	androgen receptor binding|enzyme binding|histone demethylase activity (H3-K9 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1						TGAGGAAGAGGAAGTGTCAGA	0.512													17	51					2.48551e-13	1.84062e-12	0.000566183	1	0
ADAMTSL1	92949	broad.mit.edu	37	9	18639317	18639317	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:18639317C>T	uc003zne.3	+	7	869	c.742C>T	c.(742-744)CTT>TTT	p.L248F	ADAMTSL1_uc003znb.2_Missense_Mutation_p.L248F|ADAMTSL1_uc003znc.3_Missense_Mutation_p.L248F	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	248						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		AGGAACTTTCCTTGTGGACAA	0.443													5	20					0	0	0.00116845	0	0
NOL6	65083	broad.mit.edu	37	9	33463377	33463377	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:33463377G>A	uc003zsz.2	-	24	3158	c.3057C>T	c.(3055-3057)ATC>ATT	p.I1019I	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_Silent_p.I73I|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Silent_p.I1016I|NOL6_uc011lob.1_Silent_p.I967I|NOL6_uc003ztb.1_Intron	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	1019					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		GGTGCCGCGGGATATGGCGAG	0.662													10	18					0	0	0.000978159	0	0
ARID3C	138715	broad.mit.edu	37	9	34621491	34621491	+	Silent	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:34621491T>G	uc011lon.1	-	7	1203	c.1203A>C	c.(1201-1203)CCA>CCC	p.P401P	DCTN3_uc003zuw.1_5'Flank|DCTN3_uc003zux.1_5'Flank	NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	401	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		CTGTGGAGGGTGGGGGTGCAG	0.617													6	40					0	0	0.000157383	0	0
C9orf131	138724	broad.mit.edu	37	9	35043732	35043733	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:35043732_35043733GG>TT	uc003zvw.2	+	2	1135_1136	c.1106_1107GG>TT	c.(1105-1107)TGG>TTT	p.W369F	C9orf131_uc003zvu.2_Missense_Mutation_p.W321F|C9orf131_uc003zvv.2_Missense_Mutation_p.W296F|C9orf131_uc003zvx.2_Missense_Mutation_p.W334F	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	369											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			AAGGACTTCTGGGGAACCGTGG	0.545													9	168					0	0	6.4e-05	0	0
GBA2	57704	broad.mit.edu	37	9	35739703	35739703	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:35739703G>A	uc003zxw.2	-	9	2028	c.1504C>T	c.(1504-1506)CTA>TTA	p.L502L	GBA2_uc003zxx.1_5'Flank|GBA2_uc011lpb.1_Silent_p.L502L|GBA2_uc011lpc.1_Silent_p.L502L|GBA2_uc011lpd.1_Silent_p.L508L|GBA2_uc003zxy.1_Silent_p.L215L	NM_020944	NP_065995	Q9HCG7	GBA2_HUMAN	bile acid beta-glucosidase	502	Extracellular (Potential).				bile acid metabolic process|glucosylceramide catabolic process|O-glycoside catabolic process	integral to membrane|microsome|plasma membrane|smooth endoplasmic reticulum	beta-glucosidase activity|glucosylceramidase activity			ovary(3)|skin(1)	4	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TCCTCTGGTAGGGAGTCCTCA	0.562													16	29					0	0	0.000422831	0	0
NPR2	4882	broad.mit.edu	37	9	35806418	35806418	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:35806418T>C	uc003zyd.2	+	16	2402	c.2402T>C	c.(2401-2403)CTC>CCC	p.L801P	NPR2_uc010mlb.2_Missense_Mutation_p.L777P	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	801	Cytoplasmic (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	TTGGACAACCTCCTGCTGCGC	0.532													10	50					0	0	0.00136819	0	0
FBXO10	26267	broad.mit.edu	37	9	37541368	37541368	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:37541368C>T	uc004aab.2	-	2	447	c.398G>A	c.(397-399)CGA>CAA	p.R133Q	FBXO10_uc004aac.2_Missense_Mutation_p.R149Q|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	133						ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		GAGCACAATTCGGTCATACAG	0.577													31	111					0	0	0.000409698	0	0
ALDH1B1	219	broad.mit.edu	37	9	38397198	38397198	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:38397198T>C	uc004aay.2	+	2	1565	c.1453T>C	c.(1453-1455)TTT>CTT	p.F485L		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	485					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	ATTTGGAGGGTTTAAGGAATC	0.547													15	33					0	0	0.000308642	0	0
PRKACG	5568	broad.mit.edu	37	9	71628457	71628457	+	Silent	SNP	C	T	T	rs3750373		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:71628457C>T	uc004agy.2	-	1	583	c.552G>A	c.(550-552)ACG>ACA	p.T184T		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	184	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						AACCGAAGTCCGTCACCTGCA	0.617													5	14					0	0	0.00116845	0	0
GCNT1	2650	broad.mit.edu	37	9	79117979	79117979	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:79117979G>A	uc010mpf.2	+	3	1023	c.682G>A	c.(682-684)GAA>AAA	p.E228K	GCNT1_uc010mpg.2_Missense_Mutation_p.E228K|GCNT1_uc010mph.2_Missense_Mutation_p.E228K|GCNT1_uc004akf.3_Missense_Mutation_p.E228K|GCNT1_uc010mpi.2_Missense_Mutation_p.E228K|GCNT1_uc004akh.3_Missense_Mutation_p.E228K	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	228	Lumenal (Potential).|Catalytic (By similarity).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						AACCAACCTAGAAATTGTCAG	0.423													16	57					0	0	0.00074312	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323163	79323163	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:79323163C>T	uc010mpk.2	-	8	4151	c.4027G>A	c.(4027-4029)GAG>AAG	p.E1343K		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1343					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GCGATCACCTCCTCTTCATCA	0.512													17	41					0	0	0.000958276	0	0
VPS13A	23230	broad.mit.edu	37	9	79974297	79974297	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:79974297A>C	uc004akr.2	+	58	8344	c.8084A>C	c.(8083-8085)CAT>CCT	p.H2695P	VPS13A_uc004akp.3_Missense_Mutation_p.H2695P|VPS13A_uc004akq.3_Missense_Mutation_p.H2695P|VPS13A_uc004aks.2_Missense_Mutation_p.H2656P	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2695					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TCTGCAGGACATTCCCAGATA	0.299													11	38					0	0	0.000219431	0	0
HNRNPK	3190	broad.mit.edu	37	9	86593125	86593125	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:86593125T>G	uc004ang.3	-	3	267	c.43A>C	c.(43-45)ACC>CCC	p.T15P	HNRNPK_uc011lsw.1_5'Flank|HNRNPK_uc004and.3_5'Flank|HNRNPK_uc004ank.3_Missense_Mutation_p.T15P|HNRNPK_uc004anf.3_Missense_Mutation_p.T15P|HNRNPK_uc004anh.3_Missense_Mutation_p.T15P|HNRNPK_uc011lsx.1_Missense_Mutation_p.T15P|HNRNPK_uc004ani.3_Missense_Mutation_p.T15P|HNRNPK_uc004anj.3_Missense_Mutation_p.T15P|HNRNPK_uc004ann.3_Missense_Mutation_p.T15P|HNRNPK_uc004anl.3_Missense_Mutation_p.T15P|HNRNPK_uc004anm.3_Missense_Mutation_p.T15P|RMI1_uc004anq.3_5'Flank|RMI1_uc004anr.3_5'Flank|RMI1_uc004anp.3_5'Flank	NM_031262	NP_112552	P61978	HNRPK_HUMAN	heterogeneous nuclear ribonucleoprotein K	15	Necessary for interaction with DDX1.				interspecies interaction between organisms|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of receptor-mediated endocytosis|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of low-density lipoprotein particle clearance|signal transduction	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nuclear chromatin|nucleoplasm	protein binding|RNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|single-stranded DNA binding			skin(1)	1						TCACCATTGGTTTCAGTGTTA	0.333													14	79					0	0	0.000566183	0	0
BICD2	23299	broad.mit.edu	37	9	95481034	95481034	+	Silent	SNP	G	A	A	rs141414055	byFrequency	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:95481034G>A	uc004aso.1	-	5	1950	c.1893C>T	c.(1891-1893)ATC>ATT	p.I631I	BICD2_uc004asp.1_Silent_p.I631I	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	631					microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						GGATGATAGCGATCAGGTTGT	0.657													27	59					0	0	0.000586117	0	0
C9orf125	84302	broad.mit.edu	37	9	104238208	104238208	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:104238208C>T	uc004bbm.2	-	2	1489	c.1167G>A	c.(1165-1167)GGG>GGA	p.G389G	uc004bbl.1_5'Flank	NM_032342	NP_115718	Q9BRR3	CI125_HUMAN	hypothetical protein LOC84302	389						integral to membrane					0		Acute lymphoblastic leukemia(62;0.0527)				TGGAGAAGAGCCCGATGTGTT	0.517													24	71					0	0	0.00047179	0	0
GRIN3A	116443	broad.mit.edu	37	9	104340058	104340058	+	Silent	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:104340058C>A	uc004bbp.1	-	8	3601	c.3000G>T	c.(2998-3000)GTG>GTT	p.V1000V	GRIN3A_uc004bbo.1_Silent_p.V75V|GRIN3A_uc004bbq.1_Silent_p.V1000V	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	1000	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	ACCTCTTTTCCACACGTTTGG	0.343													21	73					5.26018e-13	3.88659e-12	0.000229342	1	0
CYLC2	1539	broad.mit.edu	37	9	105767362	105767362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:105767362G>A	uc004bbs.2	+	5	519	c.449G>A	c.(448-450)GGA>GAA	p.G150E		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	150	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				atagagaaaggaaaagaagaa	0.104													7	17					0	0	8.12818e-05	0	0
CYLC2	1539	broad.mit.edu	37	9	105767653	105767653	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:105767653G>A	uc004bbs.2	+	5	810	c.740G>A	c.(739-741)GGA>GAA	p.G247E		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	247	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				GATGAGGATGGAAAAAAAGAT	0.363													16	41					0	0	0.000566183	0	0
SLC44A1	23446	broad.mit.edu	37	9	108097938	108097938	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:108097938C>T	uc004bcn.2	+	4	585	c.364C>T	c.(364-366)CTG>TTG	p.L122L	SLC44A1_uc010mtk.1_Silent_p.L122L	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	122	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	AAGGCAAGAACTGAAAACTCT	0.403													22	70					0	0	0.00047179	0	0
LPAR1	1902	broad.mit.edu	37	9	113704021	113704021	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:113704021C>T	uc004bfa.2	-	4	728	c.473G>A	c.(472-474)CGG>CAG	p.R158Q	LPAR1_uc011lwm.1_Missense_Mutation_p.R159Q|LPAR1_uc004bfb.2_Missense_Mutation_p.R158Q|LPAR1_uc004bfc.2_Missense_Mutation_p.R158Q|LPAR1_uc011lwn.1_Missense_Mutation_p.R140Q|LPAR1_uc011lwo.1_Missense_Mutation_p.R159Q|LPAR1_uc010mub.2_Missense_Mutation_p.R158Q	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	158	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						GTTGCTCATCCGTGTGTGGAG	0.542													18	56					0	0	0.00074312	0	0
ZFP37	7539	broad.mit.edu	37	9	115805958	115805958	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:115805958C>T	uc004bgm.1	-	4	968	c.940G>A	c.(940-942)GTT>ATT	p.V314I	ZFP37_uc011lwz.1_Missense_Mutation_p.V329I|ZFP37_uc011lxa.1_Missense_Mutation_p.V315I	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	314	C2H2-type 1.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CCAGTATGAACTCTCTGATGG	0.403													7	81					0	0	8.12818e-05	0	0
ASTN2	23245	broad.mit.edu	37	9	119976717	119976717	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:119976717T>A	uc004bjs.1	-	3	1036	c.935A>T	c.(934-936)GAC>GTC	p.D312V	ASTN2_uc004bjr.1_Missense_Mutation_p.D312V|ASTN2_uc004bjt.1_Missense_Mutation_p.D312V	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	312	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GCCAAACTCGTCCTCGCGGGA	0.582													6	49					0	0	8.12818e-05	0	0
OR1J4	26219	broad.mit.edu	37	9	125282298	125282298	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:125282298G>A	uc011lyw.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATAGCCTAAGGAACAGGGACA	0.458													14	40					0	0	0.000422831	0	0
LRRC8A	56262	broad.mit.edu	37	9	131670205	131670205	+	Silent	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:131670205G>C	uc004bwl.3	+	3	1016	c.762G>C	c.(760-762)GTG>GTC	p.V254V	LRRC8A_uc010myp.2_Silent_p.V254V|LRRC8A_uc010myq.2_Silent_p.V254V	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	254					pre-B cell differentiation	integral to membrane					0						GGACCCATGTGGAGGAGGGGG	0.557													3	55					0	0	0.00024832	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134454895	134454895	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:134454895C>G	uc004cbc.2	-	24	3353	c.3223G>C	c.(3223-3225)GAG>CAG	p.E1075Q	RAPGEF1_uc004cbb.2_Missense_Mutation_p.E1093Q	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	1075					activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		TAGGTCTTCTCTTCCCGGTCT	0.557													20	163					0	0	0.000229342	0	0
C9orf171	389799	broad.mit.edu	37	9	135374771	135374771	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:135374771G>C	uc004cbn.2	+	4	464	c.416G>C	c.(415-417)TGG>TCG	p.W139S	C9orf171_uc004cbo.2_Missense_Mutation_p.W103S	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	139										ovary(4)|large_intestine(1)	5						ATCGGACGCTGGAACGTGTTC	0.647													11	35					0	0	0.000673444	0	0
DBH	1621	broad.mit.edu	37	9	136501618	136501618	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:136501618C>T	uc004cel.2	+	1	134	c.125C>T	c.(124-126)CCC>CTC	p.P42L		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	42	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	GGCTCGGCTCCCCGTGAGAGC	0.652													9	26					0	0	0.000274275	0	0
COL5A1	1289	broad.mit.edu	37	9	137715262	137715262	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:137715262G>A	uc004cfe.2	+	61	5027	c.4645G>A	c.(4645-4647)GGT>AGT	p.G1549S	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1549	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TTCTCCCCAGGGTCCAACTGG	0.602													20	71					0	0	0.000586117	0	0
KCNT1	57582	broad.mit.edu	37	9	138660731	138660731	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:138660731C>T	uc011mdq.1	+	15	1532	c.1458C>T	c.(1456-1458)CCC>CCT	p.P486P	KCNT1_uc011mdr.1_Silent_p.P313P|KCNT1_uc010nbf.2_Silent_p.P441P|KCNT1_uc004cgo.1_Silent_p.P235P	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	486						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		CCAACTGCCCCCTCTACGTCC	0.627													5	30					0	0	0.00116845	0	0
KCNT1	57582	broad.mit.edu	37	9	138683645	138683645	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:138683645G>A	uc011mdq.1	+	30	3579	c.3505G>A	c.(3505-3507)GAG>AAG	p.E1169K	KCNT1_uc011mdr.1_Missense_Mutation_p.E1017K|KCNT1_uc010nbf.2_Missense_Mutation_p.E1145K	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	1169						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		CTTTGCAGACGAGATGAACGA	0.642													21	60					0	0	0.000295444	0	0
LRRC26	389816	broad.mit.edu	37	9	140063403	140063403	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:140063403C>G	uc004clp.2	-	2	1004	c.908G>C	c.(907-909)CGC>CCC	p.R303P		NM_001013653	NP_001013675	Q2I0M4	LRC26_HUMAN	leucine rich repeat containing 26 precursor	303	Cytoplasmic (Potential).					cytoplasm|cytoskeleton|voltage-gated potassium channel complex	ion channel activity|potassium channel regulator activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.000858)		TCTcggcgggcggagggcggc	0.602													3	0					0	0	0.000602214	0	0
NOXA1	10811	broad.mit.edu	37	9	140328737	140328737	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:140328737C>T	uc004cmv.2	+	14	1491	c.1356C>T	c.(1354-1356)TTC>TTT	p.F452F	C9orf167_uc011mew.1_Intron|NOXA1_uc004cmu.2_Silent_p.F459F|NOXA1_uc010nch.2_Silent_p.F403F	NM_006647	NP_006638	Q86UR1	NOXA1_HUMAN	NADPH oxidase activator 1	452	SH3.		Missing (in NOXA1truncated, a cDNA isolated from Caco-2 cells treated with butyrate).		regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|superoxide metabolic process	cytoplasm|NADPH oxidase complex	Rac GTPase binding|superoxide-generating NADPH oxidase activator activity				0	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000238)|Epithelial(140;0.000982)		CCAAGTGCTTCGTGGTCCCCG	0.652													28	97					0	0	0.00178596	0	0
CACNA1B	774	broad.mit.edu	37	9	140952615	140952615	+	Silent	SNP	C	T	T	rs35538393		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr9:140952615C>T	uc004cog.2	+	28	4366	c.4221C>T	c.(4219-4221)TTC>TTT	p.F1407F	CACNA1B_uc011mfd.1_Silent_p.F937F|CACNA1B_uc004coi.2_Silent_p.F621F	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1407	Helical; Name=S6 of repeat III; (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CCTTCTTCTTCGTCAACATCT	0.537													29	106					0	0	0.001512	0	0
ARSF	416	broad.mit.edu	37	X	3007547	3007547	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:3007547G>A	uc004cre.1	+	7	1062	c.841G>A	c.(841-843)GAA>AAA	p.E281K	ARSF_uc004crf.1_Missense_Mutation_p.E281K	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	281						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCACAGTAAGGAAACTTTCCT	0.428													17	90					0	0	0.000566183	0	0
TBL1X	6907	broad.mit.edu	37	X	9622287	9622287	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:9622287C>T	uc010ndq.2	+	5	504	c.136C>T	c.(136-138)CCG>TCG	p.P46S	TBL1X_uc004csq.3_5'UTR|TBL1X_uc010ndr.2_5'UTR|TBL1X_uc004csr.2_Missense_Mutation_p.P46S	NM_001139466	NP_001132938	O60907	TBL1X_HUMAN	transducin beta-like 1X isoform a	46					canonical Wnt receptor signaling pathway|cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|sensory perception of sound|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein C-terminus binding|protein domain specific binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Hepatocellular(5;0.000888)				CACCTCATCGCCGCGAGGTGA	0.443													20	56					0	0	0.000958276	0	0
TLR7	51284	broad.mit.edu	37	X	12905004	12905004	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:12905004C>T	uc004cvc.2	+	3	1516	c.1377C>T	c.(1375-1377)GTC>GTT	p.V459V		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	459	Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	AACCCCAGGTCCTGGAACAAT	0.368													30	134					0	0	0.000409698	0	0
PPEF1	5475	broad.mit.edu	37	X	18836213	18836213	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:18836213G>A	uc004cyq.2	+	16	1932	c.1451G>A	c.(1450-1452)CGA>CAA	p.R484Q	PPEF1_uc004cyp.2_Missense_Mutation_p.R456Q|PPEF1_uc004cyr.2_Missense_Mutation_p.R422Q|PPEF1_uc004cys.2_Missense_Mutation_p.R484Q|PPEF1_uc011mja.1_Missense_Mutation_p.R419Q|PPEF1_uc011mjb.1_Missense_Mutation_p.R428Q	NM_006240	NP_006231	O14829	PPE1_HUMAN	protein phosphatase with EF hand calcium-binding	484	EF-hand 1.				detection of stimulus involved in sensory perception|protein dephosphorylation		calcium ion binding|iron ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity				0	Hepatocellular(33;0.183)					GTGATTTCACGAAAAAGTGAC	0.343													22	87					0	0	0.000375601	0	0
PHEX	5251	broad.mit.edu	37	X	22065203	22065203	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:22065203G>A	uc004dah.2	+	3	426	c.223G>A	c.(223-225)GAT>AAT	p.D75N	PHEX_uc011mjr.1_Missense_Mutation_p.D75N|PHEX_uc011mjs.1_5'UTR	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	75	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						TCTGTCTGTGGATCCTTGTGA	0.388													24	97					0	0	0.000720815	0	0
FAM47B	170062	broad.mit.edu	37	X	34962878	34962878	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:34962878G>A	uc004ddi.1	+	1	1948	c.1930G>A	c.(1930-1932)GAA>AAA	p.E644K		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	644										ovary(3)|breast(1)	4						TGCATCAAAAGAAGATTAGAT	0.383													30	96					0	0	0.000339439	0	0
CXorf22	170063	broad.mit.edu	37	X	35974299	35974299	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:35974299G>A	uc004ddj.2	+	8	1455	c.1396G>A	c.(1396-1398)GGA>AGA	p.G466R	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	466										large_intestine(1)|lung(1)|ovary(1)	3						CAAGATTACTGGAGGGGGTAT	0.363													9	26					0	0	0.000442599	0	0
FAM47C	442444	broad.mit.edu	37	X	37028887	37028887	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:37028887G>A	uc004ddl.1	+	1	2418	c.2404G>A	c.(2404-2406)GAG>AAG	p.E802K		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	802										ovary(3)	3						TCTCCGCCTGGAGCCTCCCAA	0.592													22	39					0	0	0.000229342	0	0
USP9X	8239	broad.mit.edu	37	X	41075484	41075484	+	Silent	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:41075484T>C	uc004dfb.2	+	35	6297	c.5664T>C	c.(5662-5664)AAT>AAC	p.N1888N	USP9X_uc004dfc.2_Silent_p.N1888N	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	1888					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						TCCAAAGGAATGGTGGAGATG	0.418													19	60					0	0	0.000958276	0	0
GPKOW	27238	broad.mit.edu	37	X	48979934	48979934	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:48979934C>T	uc004dmr.2	-	1	146	c.139G>A	c.(139-141)GAT>AAT	p.D47N		NM_015698	NP_056513	Q92917	GPKOW_HUMAN	G patch domain and KOW motifs	47						nucleus	nucleic acid binding			ovary(2)	2						TTCAAGAAATCCTTCTCCTCC	0.632													5	15					0	0	0.000602214	0	0
CACNA1F	778	broad.mit.edu	37	X	49076953	49076953	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:49076953C>T	uc004dnb.2	-	19	2460	c.2398G>A	c.(2398-2400)GGT>AGT	p.G800S	CACNA1F_uc010nip.2_Missense_Mutation_p.G789S	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	800	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CTCCTTGCACCCTCCTCTTCC	0.607													4	21					0	0	0.00116845	0	0
KDM5C	8242	broad.mit.edu	37	X	53245323	53245323	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:53245323G>A	uc004drz.2	-	6	1247	c.714C>T	c.(712-714)ATC>ATT	p.I238I	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Silent_p.I171I|KDM5C_uc004dsa.2_Silent_p.I237I	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	238					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						CTGCCCCATAGATCTGTAGCT	0.532			N|F|S		clear cell renal carcinoma								29	54					0	0	0.000339439	0	0
GNL3L	54552	broad.mit.edu	37	X	54578065	54578065	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:54578065G>T	uc004dth.1	+	11	1067	c.928G>T	c.(928-930)GGG>TGG	p.G310W	GNL3L_uc004dti.2_RNA	NM_019067	NP_061940	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3	310	G.			PG->AA: Loss of nucleolar localization. No effect on nuclear localization.	ribosome biogenesis	nucleolus	GTP binding			ovary(1)	1						CATTGTCCCAGGGCCCAACTC	0.597													8	39					0.000274275	0.00199276	0.000274275	1	0
FOXR2	139628	broad.mit.edu	37	X	55650610	55650610	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:55650610G>A	uc004duo.2	+	1	778	c.466G>A	c.(466-468)GAA>AAA	p.E156K		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	156					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						TGAGCTCACAGAAGAGGAGGC	0.498													4	17					0	0	0.00024832	0	0
HEPH	9843	broad.mit.edu	37	X	65479996	65479996	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:65479996G>A	uc011moz.1	+	19	3160	c.3100G>A	c.(3100-3102)GTT>ATT	p.V1034I	HEPH_uc004dwn.2_Missense_Mutation_p.V1034I|HEPH_uc004dwo.2_Missense_Mutation_p.V764I|HEPH_uc010nkr.2_Missense_Mutation_p.V842I|HEPH_uc011mpa.1_Missense_Mutation_p.V1034I	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	1031	Extracellular (Potential).|Plastocyanin-like 6.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						GACTTTTGAGGTTGTGGAGAT	0.522													12	37					0	0	0.00136819	0	0
AWAT2	158835	broad.mit.edu	37	X	69262222	69262222	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:69262222G>A	uc004dxt.1	-	6	668	c.662C>T	c.(661-663)CCT>CTT	p.P221L		NM_001002254	NP_001002254	Q6E213	AWAT2_HUMAN	wax synthase 2	221						endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity				0						GGCATAGGCAGGTATTAGAGG	0.532													4	29					0	0	0.000602214	0	0
OGT	8473	broad.mit.edu	37	X	70779216	70779216	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:70779216C>T	uc004eaa.1	+	13	1919	c.1702C>T	c.(1702-1704)CAT>TAT	p.H568Y	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.H558Y|OGT_uc004eac.2_Missense_Mutation_p.H429Y|OGT_uc004ead.2_Missense_Mutation_p.H187Y	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	568				H->A: Reduces enzyme activity by about 95%.	cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					CTTTGGGAATCATCCTACTTC	0.388													17	52					0	0	0.00074312	0	0
PHKA1	5255	broad.mit.edu	37	X	71813013	71813013	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:71813013C>T	uc004eax.3	-	29	3485	c.3184G>A	c.(3184-3186)GGG>AGG	p.G1062R	PHKA1_uc004eay.3_Missense_Mutation_p.G1049R|PHKA1_uc011mqi.1_Missense_Mutation_p.G990R|PHKA1_uc010nll.2_Missense_Mutation_p.G94R	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	1062	Calmodulin-binding (Potential).				glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					TTCAGTGCCCCATCCAGCCTT	0.433													17	54					0	0	0.000566183	0	0
CDX4	1046	broad.mit.edu	37	X	72673379	72673379	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:72673379C>T	uc011mqk.1	+	2	529	c.529C>T	c.(529-531)CGT>TGT	p.R177C		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	177	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					AGAAAAGTATCGTGTAGTTTA	0.358													7	20					0	0	0.000274275	0	0
XIST	7503	broad.mit.edu	37	X	73065887	73065887	+	RNA	SNP	C	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:73065887C>G	uc004ebm.1	-	1		c.6702G>C				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						ATTGTCCAAACGTAAGCGTCT	0.502													20	66					0	0	0.000586117	0	0
BTK	695	broad.mit.edu	37	X	100609665	100609665	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:100609665C>A	uc004ehg.2	-	16	1777	c.1584G>T	c.(1582-1584)TTG>TTT	p.L528F	BTK_uc004ehf.2_Missense_Mutation_p.L28F|BTK_uc010nnh.2_Intron|BTK_uc010nni.2_Intron|BTK_uc004ehe.2_RNA|BTK_uc010nnj.2_Intron|BTK_uc010nnk.2_Intron|BTK_uc010nnl.2_Intron|BTK_uc010nnm.2_Missense_Mutation_p.L98F|BTK_uc010nnn.2_Missense_Mutation_p.L352F|BTK_uc010nno.2_Missense_Mutation_p.L562F|BTK_uc004ehh.1_RNA	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	528	Protein kinase.				calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						GATCGTTTACCAAACAGTTTC	0.458									Agammaglobulinemia_X-linked				8	191					0.000274275	0.00199276	0.000274275	1	0
ZMAT1	84460	broad.mit.edu	37	X	101138613	101138613	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:101138613G>A	uc004eim.2	-	2	4771	c.1273C>T	c.(1273-1275)CGA>TGA	p.R425*	ZMAT1_uc011mrl.1_Nonsense_Mutation_p.R596*|ZMAT1_uc004ein.2_Nonsense_Mutation_p.R425*|ZMAT1_uc011mrm.1_Nonsense_Mutation_p.R425*	NM_032441	NP_115817	Q5H9K5	ZMAT1_HUMAN	zinc finger, matrin type 1 isoform 3	425						nucleus	zinc ion binding	p.R425Q(1)		ovary(1)	1						TTCTTTTTTCGATGCTTAAGC	0.378													12	28					0	0	0.000422831	0	0
GPRASP1	9737	broad.mit.edu	37	X	101910184	101910184	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:101910184G>A	uc004ejj.3	+	5	2144	c.1343G>A	c.(1342-1344)GGG>GAG	p.G448E	GPRASP1_uc004eji.3_Missense_Mutation_p.G448E|GPRASP1_uc010nod.2_Missense_Mutation_p.G448E	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	448						cytoplasm	protein binding			ovary(1)|lung(1)	2						GCCAGTATGGGGACTGGGGCT	0.502													30	111					0	0	0.00178596	0	0
BHLHB9	80823	broad.mit.edu	37	X	102004755	102004755	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:102004755A>G	uc010nog.2	+	4	1403	c.832A>G	c.(832-834)ATC>GTC	p.I278V	BHLHB9_uc011mrq.1_Missense_Mutation_p.I278V|BHLHB9_uc011mrr.1_Missense_Mutation_p.I278V|BHLHB9_uc011mrs.1_Missense_Mutation_p.I278V|BHLHB9_uc011mrt.1_Missense_Mutation_p.I278V|BHLHB9_uc004ejo.2_Missense_Mutation_p.I278V|BHLHB9_uc011mru.1_Missense_Mutation_p.I278V|BHLHB9_uc011mrv.1_Missense_Mutation_p.I278V	NM_001142526	NP_001135998	Q6PI77	BHLH9_HUMAN	basic helix-loop-helix domain containing, class	278						cytoplasm|nucleus	binding			ovary(2)	2						CTCACAGCCTATCCCTGAGTG	0.483													20	68					0	0	0.00152264	0	0
NRK	203447	broad.mit.edu	37	X	105137833	105137833	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:105137833G>A	uc004emd.2	+	6	690	c.387G>A	c.(385-387)ATG>ATA	p.M129I	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	129	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						AGATGGTGATGGAGTTATGTG	0.378										HNSCC(51;0.14)			12	24					0	0	0.000308642	0	0
RNF128	79589	broad.mit.edu	37	X	106016362	106016362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:106016362G>A	uc004eml.2	+	2	954	c.704G>A	c.(703-705)CGG>CAG	p.R235Q	RNF128_uc004emk.2_Missense_Mutation_p.R209Q	NM_194463	NP_919445	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 1	235						endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						CGAAGGCTACGGAATGCAAGA	0.373													20	59					0	0	0.000229342	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698023	111698023	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:111698023C>T	uc004epo.1	+	3	508	c.67C>T	c.(67-69)CTG>TTG	p.L23L		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	23							nucleic acid binding|zinc ion binding			ovary(1)	1						GGCAGAGAATCTGATTCTGCG	0.498													21	75					0	0	0.00152264	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698282	111698282	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:111698282G>A	uc004epo.1	+	3	767	c.326G>A	c.(325-327)AGT>AAT	p.S109N		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	109							nucleic acid binding|zinc ion binding			ovary(1)	1						CAGTTAGAAAGTTGTGGGATC	0.408													26	54					0	0	0.000720815	0	0
CUL4B	8450	broad.mit.edu	37	X	119708441	119708441	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:119708441C>T	uc004esw.2	-	2	469	c.32G>A	c.(31-33)GGG>GAG	p.G11E		NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	11	Ser-rich.				cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						ATCATCATTCCCATCTCCTGA	0.373													26	92					0	0	0.000409698	0	0
GRIA3	2892	broad.mit.edu	37	X	122538601	122538601	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:122538601G>A	uc004etq.3	+	11	1629	c.1336G>A	c.(1336-1338)GAA>AAA	p.E446K	GRIA3_uc004etr.3_Missense_Mutation_p.E446K|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.E430K	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	446	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TGAGCAACTGGAAGGAAATGA	0.378													5	30					0	0	8.12818e-05	0	0
THOC2	57187	broad.mit.edu	37	X	122820484	122820484	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:122820484A>T	uc004etu.2	-	8	714	c.682T>A	c.(682-684)TTT>ATT	p.F228I	THOC2_uc011muh.1_Missense_Mutation_p.F149I|THOC2_uc011mui.1_Missense_Mutation_p.F113I	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	228					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						AAAGATATAAAGAAGTCATCG	0.368													38	146					0	0	0.000953801	0	0
ODZ1	10178	broad.mit.edu	37	X	124028169	124028170	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:124028169_124028170CC>TT	uc004euj.2	-	3	574_575	c.510_511GG>AA	c.(508-513)ATGGAG>ATAAAG	p.170_171ME>IK	ODZ1_uc011muj.1_Missense_Mutation_p.170_171ME>IK|ODZ1_uc010nqy.2_Missense_Mutation_p.170_171ME>IK	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	170_171	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GCTTGAGCCTCCATGTCACAAC	0.416													9	41					0	0	6.4e-05	0	0
UTP14A	10813	broad.mit.edu	37	X	129058844	129058844	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:129058844G>A	uc004euz.2	+	12	1450	c.1422G>A	c.(1420-1422)AGG>AGA	p.R474R	UTP14A_uc011mup.1_Silent_p.R422R|UTP14A_uc011muq.1_Silent_p.R420R	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	474					rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						ATCAGTCCAGGAAGCAAAAAG	0.493													52	152					0	0	0.000781405	0	0
UTP14A	10813	broad.mit.edu	37	X	129060059	129060060	+	Silent	DNP	CC	TT	TT			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:129060059_129060060CC>TT	uc004euz.2	+	13	1942_1943	c.1914_1915CC>TT	c.(1912-1917)GGCCTA>GGTTTA	p.638_639GL>GL	UTP14A_uc011mup.1_Silent_p.586_587GL>GL|UTP14A_uc011muq.1_Silent_p.584_585GL>GL	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	638_639					rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						GTGGTGTGGGCCTAAAGCCCAG	0.574											OREG0019920	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	27					0	0	6.4e-05	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994088	140994088	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:140994088C>T	uc004fbt.2	+	4	1184	c.898C>T	c.(898-900)CAG>TAG	p.Q300*	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	300							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGTTTTCCCCAGTCTCCTCT	0.488										HNSCC(15;0.026)			50	153					0	0	0.000781405	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290861	141290861	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:141290861C>T	uc004fbu.1	-	3	1261	c.913G>A	c.(913-915)GCC>ACC	p.A305T		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	305	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCTGAATGGGCTCTCGGACCC	0.473										HNSCC(46;0.14)			18	78					0	0	0.000566183	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303172	151303172	+	Silent	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:151303172C>T	uc004ffk.2	-	5	1329	c.921G>A	c.(919-921)AGG>AGA	p.R307R	MAGEA10_uc004ffl.2_Silent_p.R307R	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	307	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					GACTCATCTTCCTAATTTCAG	0.498													39	135					0	0	0.00170553	0	0
PLXNA3	55558	broad.mit.edu	37	X	153693375	153693375	+	Silent	SNP	C	T	T	rs111936718		TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:153693375C>T	uc004flm.2	+	11	2231	c.2058C>T	c.(2056-2058)ATC>ATT	p.I686I		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	686	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCCCTGAGATCCTGCCCAGTG	0.612													6	7					0	0	0.000157383	0	0
F8	2157	broad.mit.edu	37	X	154156856	154156856	+	Silent	SNP	G	A	A			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:154156856G>A	uc004fmt.2	-	14	5380	c.5209C>T	c.(5209-5211)CTA>TTA	p.L1737L		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1737	F5/8 type A 3.|Plastocyanin-like 5.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	CTGTTTCTTAGAACATGTGGG	0.363													6	19					0	0	8.12818e-05	0	0
F8	2157	broad.mit.edu	37	X	154157027	154157027	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:154157027C>T	uc004fmt.2	-	14	5209	c.5038G>A	c.(5038-5040)GAA>AAA	p.E1680K		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1680					acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TAGTCAATTTCCTCTTGATCT	0.408													7	58					0	0	0.000274275	0	0
F8	2157	broad.mit.edu	37	X	154194290	154194290	+	Silent	SNP	T	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:154194290T>C	uc004fmt.2	-	9	1569	c.1398A>G	c.(1396-1398)GGA>GGG	p.G466G		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	466	F5/8 type A 2.|Plastocyanin-like 3.		G -> E (in HEMA; severe sporadic).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GTCCCAAGATTCCTGATTCAT	0.403													33	108					0	0	0.00128727	0	0
MICALCL	84953	broad.mit.edu	37	11	12316384	12316389	+	In_Frame_Del	DEL	CTCCTA	-	-	rs3812754	byFrequency	TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr11:12316384_12316389delCTCCTA	uc001mkg.1	+	3	1697_1702	c.1406_1411delCTCCTA	c.(1405-1413)CCTCCTACA>CCA	p.PT470del		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	470_471					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		cctcctcctcctcctACAGCGGGAGG	0.432													5	3	---	---	---	---					
SNRPD1	6632	broad.mit.edu	37	18	19209027	19209038	+	In_Frame_Del	DEL	AGGAAGAGGCAG	-	-			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr18:19209027_19209038delAGGAAGAGGCAG	uc002ktj.1	+	4	419_430	c.288_299delAGGAAGAGGCAG	c.(286-300)GCAGGAAGAGGCAGA>GCA	p.GRGR109del		NM_006938	NP_008869	P62314	SMD1_HUMAN	small nuclear ribonucleoprotein D1 polypeptide	109_112	Arg/Lys-rich (basic).				ncRNA metabolic process|spliceosomal snRNP assembly|spliceosome assembly	catalytic step 2 spliceosome|cytosol|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	protein binding|RNA binding				0						CTTCAGTTGCaggaagaggcagaggaagagga	0.278													11	105	---	---	---	---					
C19orf28	126321	broad.mit.edu	37	19	3542865	3542866	+	Frame_Shift_Ins	INS	-	T	T			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:3542865_3542866insT	uc002lxw.2	-	10	1700_1701	c.1530_1531insA	c.(1528-1533)GAAGCCfs	p.E510fs	C19orf28_uc002lxx.2_Intron|C19orf28_uc010dtl.1_5'Flank|C19orf71_uc010xhm.1_Intron	NM_021731	NP_068377	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform a	Error:Variant_position_missing_in_Q6NUT3_after_alignment					transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCAGGGGGGCTTCCCAGAGGA	0.579													15	50	---	---	---	---					
TM6SF2	53345	broad.mit.edu	37	19	19380541	19380549	+	In_Frame_Del	DEL	AACCCAGCC	-	-			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr19:19380541_19380549delAACCCAGCC	uc002nmd.1	-	5	481_489	c.431_439delGGCTGGGTT	c.(430-441)TGGCTGGGTTCC>TCC	p.WLG144del	HAPLN4_uc002nmc.2_5'UTR	NM_001001524	NP_001001524	Q9BZW4	TM6S2_HUMAN	transmembrane 6 superfamily member 2	144_146	Helical; (Potential).					integral to membrane					0			Epithelial(12;0.0151)			ATGGCGAAGGAACCCAGCCAGTAGAGTCC	0.550													8	181	---	---	---	---					
DHX30	22907	broad.mit.edu	37	3	47891505	47891506	+	Frame_Shift_Ins	INS	-	C	C			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr3:47891505_47891506insC	uc003cru.2	+	22	3906_3907	c.3480_3481insC	c.(3478-3483)CTTCCCfs	p.L1160fs	DHX30_uc003crt.2_Frame_Shift_Ins_p.L1121fs	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	1160_1161						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TGGCTGCACTTCCCCCCAGCGT	0.683											OREG0015550	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	10	---	---	---	---					
THEMIS	387357	broad.mit.edu	37	6	128150677	128150680	+	Frame_Shift_Del	DEL	TCTT	-	-			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr6:128150677_128150680delTCTT	uc003qbi.2	-	4	969_972	c.650_653delAAGA	c.(649-654)AAAGACfs	p.K217fs	THEMIS_uc010kfa.2_Frame_Shift_Del_p.K120fs|THEMIS_uc011ebt.1_Frame_Shift_Del_p.K217fs|THEMIS_uc010kfb.2_Frame_Shift_Del_p.K182fs	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	217_218	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						ACCATAAAAGTCTTTAGGAAATGG	0.358													19	59	---	---	---	---					
AGAP3	116988	broad.mit.edu	37	7	150831524	150831524	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chr7:150831524delT	uc003wjg.1	+	11	1367	c.1364delT	c.(1363-1365)CTGfs	p.L455fs	AGAP3_uc003wje.1_Frame_Shift_Del_p.L227fs|AGAP3_uc003wjj.1_Frame_Shift_Del_p.L11fs	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	419	PH.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						GAGATTGACCTGCTGCGGACA	0.637													15	53	---	---	---	---					
SMC1A	8243	broad.mit.edu	37	X	53423149	53423152	+	Frame_Shift_Del	DEL	CTTC	-	-			TCGA-D3-A2JO-06A-11D-A196-08	TCGA-D3-A2JO-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e50ef3e-1069-48b7-a8d3-9c32fe2d3a23	827c28dd-cc54-48c7-9382-057f7b75933c	g.chrX:53423149_53423152delCTTC	uc004dsg.2	-	18	2926_2929	c.2857_2860delGAAG	c.(2857-2862)GAAGAGfs	p.E953fs	SMC1A_uc011moe.1_Frame_Shift_Del_p.E931fs	NM_006306	NP_006297	Q14683	SMC1A_HUMAN	structural maintenance of chromosomes 1A	953_954					cell cycle checkpoint|cell division|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic sister chromatid cohesion|mitotic spindle organization|negative regulation of DNA endoreduplication|nuclear mRNA splicing, via spliceosome|response to radiation|signal transduction in response to DNA damage	cohesin core heterodimer|condensed chromosome kinetochore|condensed nuclear chromosome|cytoplasm|meiotic cohesin complex|nucleoplasm	ATP binding|chromatin binding|microtubule motor activity|protein heterodimerization activity			ovary(5)|central_nervous_system(1)	6						ATACTCACCTCTTCCTGACTAATA	0.495													19	132	---	---	---	---					
