Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIAA1751	85452	broad.mit.edu	37	1	1887060	1887060	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:1887060G>A	uc001aim.1	-	18	2402	c.2246C>T	c.(2245-2247)GCT>GTT	p.A749V	KIAA1751_uc009vkz.1_Intron	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	749										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		GGGCCCCTCAGCCCCCTGGAA	0.592													7	73					0	0	0.00198382	0	0
KIF1B	23095	broad.mit.edu	37	1	10405970	10405970	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:10405970C>T	uc001aqx.3	+	35	3958	c.3756C>T	c.(3754-3756)CTC>CTT	p.L1252L	KIF1B_uc001aqw.3_Silent_p.L1206L|KIF1B_uc001aqy.2_Silent_p.L1226L|KIF1B_uc001aqz.2_Silent_p.L1252L|KIF1B_uc001ara.2_Silent_p.L1212L|KIF1B_uc001arb.2_Silent_p.L1238L	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1252					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		AGTATGACCTCCTGGTTTGGT	0.378													4	38					0	0	0.000602214	0	0
CASZ1	54897	broad.mit.edu	37	1	10713500	10713500	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:10713500G>A	uc001aro.2	-	11	2934	c.2614C>T	c.(2614-2616)CTC>TTC	p.L872F	CASZ1_uc001arp.1_Missense_Mutation_p.L872F|CASZ1_uc009vmx.2_Missense_Mutation_p.L896F	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	872					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GGCGAGATGAGGCCCTTGCTT	0.667													5	35					0	0	0.00116845	0	0
EXOSC10	5394	broad.mit.edu	37	1	11137440	11137440	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:11137440G>A	uc001asa.2	-	16	1911	c.1861C>T	c.(1861-1863)CCA>TCA	p.P621S	EXOSC10_uc001asb.2_Missense_Mutation_p.P621S	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	621					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		GGGATGATTGGATAGCCATCC	0.488													7	57					0	0	0.00307968	0	0
PTCHD2	57540	broad.mit.edu	37	1	11585237	11585237	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:11585237C>T	uc001ash.3	+	12	2619	c.2481C>T	c.(2479-2481)TTC>TTT	p.F827F	PTCHD2_uc001asi.1_Silent_p.F827F	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	827	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CCGTAGATTTCCCAGGCACCG	0.567													11	63					0	0	0.00244969	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919833	12919833	+	Silent	SNP	A	G	G	rs150145103	byFrequency	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:12919833A>G	uc001aum.1	+	3	660	c.573A>G	c.(571-573)CCA>CCG	p.P191P		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	191											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ATCTAACGCCAATTAAATATC	0.398													6	180					0	0	0.000673444	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919840	12919840	+	Missense_Mutation	SNP	T	C	C	rs142071411	by1000genomes	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:12919840T>C	uc001aum.1	+	3	667	c.580T>C	c.(580-582)TAT>CAT	p.Y194H		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	194											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCCAATTAAATATCTCAGAAA	0.383													4	169					0	0	0.00307968	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001268	13001268	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:13001268G>A	uc001auq.2	-	3	501	c.415C>T	c.(415-417)CCA>TCA	p.P139S	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	139											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTCATCCTTGGACAGTCCTGC	0.507													11	320					0	0	0.000978159	0	0
SPEN	23013	broad.mit.edu	37	1	16255609	16255609	+	Silent	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:16255609T>C	uc001axk.1	+	11	3078	c.2874T>C	c.(2872-2874)CTT>CTC	p.L958L	SPEN_uc010obp.1_Silent_p.L917L	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	958					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AAGGCAGGCTTAAAGCCAGGA	0.488													6	70					0	0	0.00198382	0	0
PADI3	51702	broad.mit.edu	37	1	17603076	17603076	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:17603076C>T	uc001bai.2	+	12	1410	c.1370C>T	c.(1369-1371)CCC>CTC	p.P457L		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	457					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	AAGGTGCAGCCCCCCGTGGAG	0.572													5	28					0	0	0.00116845	0	0
TAS1R2	80834	broad.mit.edu	37	1	19185996	19185996	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:19185996G>A	uc001bba.1	-	1	160	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	53	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	GCACCTGCAGGAAGTTAAGGT	0.607													7	39					0	0	0.00307968	0	0
EIF4G3	8672	broad.mit.edu	37	1	21276553	21276553	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:21276553C>T	uc001bec.2	-	8	854	c.598G>A	c.(598-600)GAG>AAG	p.E200K	EIF4G3_uc010odi.1_Intron|EIF4G3_uc010odj.1_Missense_Mutation_p.E199K|EIF4G3_uc009vpz.2_Missense_Mutation_p.E200K|EIF4G3_uc001bed.2_Missense_Mutation_p.E200K|EIF4G3_uc001bef.2_Missense_Mutation_p.E199K|EIF4G3_uc001bee.2_Missense_Mutation_p.E206K|EIF4G3_uc001beg.2_Missense_Mutation_p.E199K|EIF4G3_uc010odk.1_Missense_Mutation_p.E200K|EIF4G3_uc001beh.2_Missense_Mutation_p.E211K	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	200					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		TGAGCGCTCTCCACAGTCCCA	0.512													4	31					0	0	0.000602214	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21940145	21940145	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:21940145G>A	uc001bex.2	-	9	708	c.450C>T	c.(448-450)TTC>TTT	p.F150F	RAP1GAP_uc001bev.2_Silent_p.F150F|RAP1GAP_uc001bew.2_Silent_p.F214F|RAP1GAP_uc001bey.2_Silent_p.F150F	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	150					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		CAACATTAGGGAACTCGGTGA	0.597													5	60					0	0	0.00198382	0	0
CATSPER4	378807	broad.mit.edu	37	1	26524815	26524815	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:26524815C>T	uc010oez.1	+	6	717	c.717C>T	c.(715-717)TTC>TTT	p.F239F	CATSPER4_uc010oey.1_Silent_p.F61F|CATSPER4_uc009vsf.2_Intron	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	239	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		TTGGTGCATTCGTGCCCAAGC	0.512													11	119					0	0	0.00136819	0	0
ZNF683	257101	broad.mit.edu	37	1	26694970	26694970	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:26694970G>A	uc001bmg.1	-	2	211	c.93C>T	c.(91-93)TTC>TTT	p.F31F	ZNF683_uc001bmh.1_Silent_p.F31F|ZNF683_uc009vsj.1_Silent_p.F31F	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	31					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		GGAAGAGCTGGAAGTCCAGGC	0.537													5	36					0	0	0.00116845	0	0
YTHDF2	51441	broad.mit.edu	37	1	29069817	29069817	+	Silent	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:29069817A>C	uc001brc.2	+	4	1532	c.1035A>C	c.(1033-1035)GCA>GCC	p.A345A	YTHDF2_uc001brd.2_Silent_p.A342A|YTHDF2_uc010ofx.1_Silent_p.A295A|YTHDF2_uc001bre.2_Silent_p.A295A	NM_016258	NP_057342	Q9Y5A9	YTHD2_HUMAN	high glucose-regulated protein 8	345					humoral immune response					ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000601)|all_lung(284;0.000771)|Breast(348;0.00502)|Renal(390;0.00758)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;5.46e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		AGCAACAGGCAGCTCAGCCAA	0.587													3	49					0	0	0.00024832	0	0
CSMD2	114784	broad.mit.edu	37	1	34049281	34049281	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:34049281G>A	uc001bxn.1	-	48	7236	c.7207C>T	c.(7207-7209)CTC>TTC	p.L2403F	CSMD2_uc001bxm.1_Missense_Mutation_p.L2401F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2403	CUB 14.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TTCTCGCTGAGGAAGTACTCC	0.433													7	80					0	0	0.00307968	0	0
C1orf94	84970	broad.mit.edu	37	1	34667757	34667757	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:34667757C>T	uc001bxs.3	+	4	1172	c.773C>T	c.(772-774)CCT>CTT	p.P258L	C1orf94_uc001bxt.2_Missense_Mutation_p.P448L	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	258							protein binding				0		Myeloproliferative disorder(586;0.0393)				CCACACTTTCCTACAGCCATG	0.512													4	24					0	0	0.00024832	0	0
RSPO1	284654	broad.mit.edu	37	1	38078484	38078484	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:38078484C>T	uc001cbl.1	-	8	1523	c.735G>A	c.(733-735)CAG>CAA	p.Q245Q	RSPO1_uc001cbm.1_Silent_p.Q245Q|RSPO1_uc009vvf.1_Silent_p.Q218Q|RSPO1_uc009vvg.1_Silent_p.Q182Q	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	245					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GCTGCTGTTGCTGCCCCTTGC	0.642													5	42					0	0	0.000602214	0	0
MACF1	23499	broad.mit.edu	37	1	39951278	39951278	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:39951278C>T	uc010oiu.1	+	64	17760	c.17629C>T	c.(17629-17631)CGG>TGG	p.R5877W	MACF1_uc010ois.1_Missense_Mutation_p.R5369W|MACF1_uc001cde.1_Missense_Mutation_p.R283W|MACF1_uc001cdf.1_Missense_Mutation_p.R252W|MACF1_uc001cdg.2_3'UTR|MACF1_uc001cdh.2_3'UTR	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7327	Ser-rich.|C-terminal tail (By similarity).|4 X 4 AA tandem repeats of [GS]-S-R-[AR].				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			agcCAGCAGCCGGCGAGGAAG	0.428													4	28					0	0	0.00024832	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047174	42047174	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:42047174G>A	uc001cgz.3	-	4	4508	c.3295C>T	c.(3295-3297)CCG>TCG	p.P1099S	HIVEP3_uc001cha.3_Missense_Mutation_p.P1099S|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1099					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TTGCCTCCCGGGGGTCCACCA	0.612													7	32					0	0	0.00198382	0	0
TIE1	7075	broad.mit.edu	37	1	43777423	43777423	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:43777423C>T	uc001ciu.2	+	10	1494	c.1415C>T	c.(1414-1416)TCT>TTT	p.S472F	TIE1_uc010okd.1_Missense_Mutation_p.S472F|TIE1_uc010oke.1_Missense_Mutation_p.S427F|TIE1_uc009vwq.2_Missense_Mutation_p.S428F|TIE1_uc010okf.1_Missense_Mutation_p.S117F|TIE1_uc010okg.1_Missense_Mutation_p.S117F	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	472	Extracellular (Potential).|Fibronectin type-III 1.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GTCTCGTTCTCTGGGGATGGA	0.657													5	31					0	0	0.000602214	0	0
CYP4A11	1579	broad.mit.edu	37	1	47403795	47403795	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:47403795C>T	uc001cqp.3	-	2	261	c.210G>A	c.(208-210)CAG>CAA	p.Q70Q	CYP4A11_uc001cqq.2_Silent_p.Q70Q|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	70					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GTTGTAGCTCCTGGTCCTGTT	0.502													6	53					0	0	0.00307968	0	0
CDCP2	200008	broad.mit.edu	37	1	54610287	54610287	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:54610287C>T	uc001cwv.1	-	2	1127	c.279G>A	c.(277-279)GGG>GGA	p.G93G		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	93	CUB 1.					extracellular region				ovary(1)	1						CTGGTGAGGCCCCATTGTAGA	0.597													4	16					0	0	0.000602214	0	0
L1TD1	54596	broad.mit.edu	37	1	62672661	62672661	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:62672661G>A	uc001dae.3	+	3	663	c.361G>A	c.(361-363)GGA>AGA	p.G121R		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	121										ovary(1)|skin(1)	2						gaaaatagaaggagaaaactc	0.05													6	92					0	0	0.00198382	0	0
LEPR	3953	broad.mit.edu	37	1	66075946	66075946	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:66075946G>A	uc001dci.2	+	14	2164	c.1962G>A	c.(1960-1962)ATG>ATA	p.M654I	LEPR_uc001dcg.2_Missense_Mutation_p.M654I|LEPR_uc001dch.2_Missense_Mutation_p.M654I|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.M654I|LEPR_uc001dck.2_Missense_Mutation_p.M654I	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	654	Extracellular (Potential).|Fibronectin type-III 3.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		GAGATACTATGAAAAAGGAGA	0.284													11	38					0	0	0.000978159	0	0
PTGFR	5737	broad.mit.edu	37	1	78958973	78958973	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:78958973C>T	uc001din.2	+	2	811	c.545C>T	c.(544-546)TCG>TTG	p.S182L	PTGFR_uc001dim.2_Missense_Mutation_p.S182L	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	182	Extracellular (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	ATTCAGGCGTCGAGGACCTGG	0.413													7	70					0	0	0.00198382	0	0
GBP5	115362	broad.mit.edu	37	1	89735113	89735113	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:89735113C>T	uc001dnc.2	-	3	663	c.126G>A	c.(124-126)GCG>GCA	p.A42A	GBP5_uc001dnd.2_Silent_p.A42A|GBP5_uc001dne.1_Silent_p.A42A	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	42						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		GGCCCACAATCGCTACCACAA	0.502													7	61					0	0	0.00307968	0	0
GLMN	11146	broad.mit.edu	37	1	92732271	92732271	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:92732271G>A	uc001dor.2	-	12	1241	c.1126C>T	c.(1126-1128)CCC>TCC	p.P376S	GLMN_uc009wdg.2_RNA|GLMN_uc001dos.2_Intron	NM_053274	NP_444504	Q92990	GLMN_HUMAN	glomulin	376					muscle cell differentiation|negative regulation of T cell proliferation|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of phosphorylation|regulation of gene expression, epigenetic|vasculogenesis	intracellular	hepatocyte growth factor receptor binding			skin(1)	1		all_lung(203;0.00827)|Lung NSC(277;0.0295)		all cancers(265;0.00702)|GBM - Glioblastoma multiforme(16;0.0381)|Epithelial(280;0.0989)		GTCTCAATGGGGCAAAGTGTC	0.264									Multiple_Glomus_Tumors_(of_the_Skin)_Familial				4	47					0	0	0.00024832	0	0
SLC44A3	126969	broad.mit.edu	37	1	95293156	95293156	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:95293156G>A	uc001dqv.3	+	4	479	c.372G>A	c.(370-372)CAG>CAA	p.Q124Q	SLC44A3_uc001dqx.3_Silent_p.Q124Q|SLC44A3_uc010otq.1_Intron|SLC44A3_uc010otr.1_Silent_p.Q88Q|SLC44A3_uc001dqw.3_Silent_p.Q76Q|SLC44A3_uc010ots.1_Intron|SLC44A3_uc009wds.2_Silent_p.Q27Q|SLC44A3_uc010ott.1_Intron|SLC44A3_uc010otu.1_Intron	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	124						integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	CTGAAGAGCAGCTTGACTCCC	0.517													4	43					0	0	0.00024832	0	0
DPYD	1806	broad.mit.edu	37	1	98164917	98164917	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:98164917C>T	uc001drv.2	-	6	807	c.670G>A	c.(670-672)GGT>AGT	p.G224S	DPYD_uc010oub.1_RNA	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	224					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	CTTAAACCACCAACATATTCT	0.353													4	34					0	0	0.000602214	0	0
COL11A1	1301	broad.mit.edu	37	1	103385889	103385889	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:103385889G>A	uc001dul.2	-	49	4058	c.3740C>T	c.(3739-3741)TCA>TTA	p.S1247L	COL11A1_uc001duk.2_Missense_Mutation_p.S443L|COL11A1_uc001dum.2_Missense_Mutation_p.S1259L|COL11A1_uc001dun.2_Missense_Mutation_p.S1208L|COL11A1_uc009weh.2_Missense_Mutation_p.S1131L	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1247	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ACCACCAACTGAACCAACAGA	0.363													7	92					0	0	0.000274275	0	0
KIAA1324	57535	broad.mit.edu	37	1	109735454	109735454	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:109735454C>T	uc001dwq.2	+	15	2041	c.1905C>T	c.(1903-1905)GTC>GTT	p.V635V	KIAA1324_uc009wex.1_Silent_p.V585V|KIAA1324_uc009wey.2_Silent_p.V548V|KIAA1324_uc010ovg.1_Silent_p.V533V|KIAA1324_uc001dwr.2_Silent_p.V285V	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	635	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CTTATGGTGTCCAGGCCTGTG	0.532													6	112					0	0	0.00198382	0	0
SORT1	6272	broad.mit.edu	37	1	109898080	109898080	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:109898080C>A	uc001dxm.1	-	4	501	c.452G>T	c.(451-453)GGG>GTG	p.G151V	SORT1_uc010ovi.1_Missense_Mutation_p.G15V|SORT1_uc009wfb.2_Missense_Mutation_p.G15V	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	151	BNR 1.|Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		AAAGTTCTTCCCATAATCCTC	0.418													8	141					0.000673444	0.00151876	0.000673444	1	0
ATXN7L2	127002	broad.mit.edu	37	1	110031632	110031632	+	Missense_Mutation	SNP	C	T	T	rs141453920		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:110031632C>T	uc001dxr.2	+	7	962	c.947C>T	c.(946-948)TCC>TTC	p.S316F	ATXN7L2_uc001dxs.2_5'UTR|ATXN7L2_uc001dxt.2_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	316										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		GAGCTCCCCTCCTCAGTCCAG	0.622													8	131					0	0	0.00307968	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110033590	110033590	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:110033590C>T	uc001dxr.2	+	10	1420	c.1405C>T	c.(1405-1407)CCG>TCG	p.P469S	ATXN7L2_uc001dxs.2_Missense_Mutation_p.P96S|ATXN7L2_uc001dxt.2_5'UTR	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	469										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		TGTCAACTCCCCGTTATCTGC	0.607											OREG0013635	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	128					0	0	0.000978159	0	0
GNAT2	2780	broad.mit.edu	37	1	110152749	110152749	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:110152749G>A	uc001dya.2	-	3	429	c.216C>T	c.(214-216)ATC>ATT	p.I72I		NM_005272	NP_005263	P19087	GNAT2_HUMAN	guanine nucleotide binding protein, alpha	72					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	G-protein beta/gamma-subunit complex binding|G-protein coupled photoreceptor activity|G-protein-coupled receptor binding|GTP binding|GTPase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0422)|Colorectal(144;0.108)|Epithelial(280;0.125)|all cancers(265;0.129)|LUSC - Lung squamous cell carcinoma(189;0.227)		TTCCATAGATGATAGCCTTGA	0.502													7	78					0	0	0.00198382	0	0
AMPD2	271	broad.mit.edu	37	1	110171047	110171048	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:110171047_110171048CC>TT	uc009wfh.1	+	12	2041_2042	c.1499_1500CC>TT	c.(1498-1500)TCC>TTT	p.S500F	AMPD2_uc009wfg.1_RNA|AMPD2_uc001dyb.1_Missense_Mutation_p.S419F|AMPD2_uc001dyc.1_Missense_Mutation_p.S500F|AMPD2_uc010ovr.1_Missense_Mutation_p.S425F|AMPD2_uc010ovs.1_Missense_Mutation_p.S382F|AMPD2_uc001dyd.1_Missense_Mutation_p.S381F|AMPD2_uc001dye.1_5'Flank	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	500					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		ATTGGGGAGTCCGTCCTCCGAG	0.525													7	49					0	0	6.4e-05	0	0
SPAG17	200162	broad.mit.edu	37	1	118629341	118629342	+	Silent	DNP	GG	AA	AA			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:118629341_118629342GG>AA	uc001ehk.2	-	12	1631_1632	c.1563_1564CC>TT	c.(1561-1566)CTCCTA>CTTTTA	p.521_522LL>LL		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	521_522						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TAGTTCAGTAGGAGGGGGCCTT	0.386													4	46					0	0	6.4e-05	0	0
REG4	83998	broad.mit.edu	37	1	120337285	120337285	+	Missense_Mutation	SNP	C	T	T	rs150927973		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:120337285C>T	uc001eig.2	-	7	873	c.433G>A	c.(433-435)GAA>AAA	p.E145K	REG4_uc001eif.2_Missense_Mutation_p.E145K	NM_001159352	NP_001152824	Q9BYZ8	REG4_HUMAN	regenerating islet-derived family, member 4	145	C-type lectin.					extracellular region	sugar binding			ovary(1)	1	all_cancers(5;4.81e-10)|all_epithelial(5;7.98e-11)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;8.1e-07)|Lung NSC(69;5.89e-06)|all_epithelial(167;0.000959)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0588)		TTGTTGCATTCGTTGCTGCTC	0.423													18	206					0	0	0.00188189	0	0
BCL9	607	broad.mit.edu	37	1	147092682	147092682	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:147092682C>T	uc001epq.2	+	8	3461	c.2721C>T	c.(2719-2721)TCC>TCT	p.S907S	BCL9_uc010ozr.1_Silent_p.S833S	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	907	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CCATTAAGTCCCCCCCTGTTT	0.622			T	IGH@|IGL@	B-ALL								8	41					0	0	0.000274275	0	0
FLG	2312	broad.mit.edu	37	1	152281481	152281481	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:152281481G>A	uc001ezu.1	-	3	5917	c.5881C>T	c.(5881-5883)CAC>TAC	p.H1961Y		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1961	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGTCTTCGTGATGGGACCCA	0.572									Ichthyosis				15	176					0	0	0.00244969	0	0
FLG	2312	broad.mit.edu	37	1	152281618	152281618	+	Missense_Mutation	SNP	C	T	T	rs145528116		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:152281618C>T	uc001ezu.1	-	3	5780	c.5744G>A	c.(5743-5745)GGA>GAA	p.G1915E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1915	Ser-rich.|Filaggrin 11.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACACTGGATCCCTGGTTCCT	0.582									Ichthyosis				12	147					0	0	0.00244969	0	0
FLG	2312	broad.mit.edu	37	1	152283841	152283841	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:152283841C>T	uc001ezu.1	-	3	3557	c.3521G>A	c.(3520-3522)GGA>GAA	p.G1174E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1174	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGCCTTCCTCCTCTCCTTGA	0.597									Ichthyosis				10	161					0	0	0.000978159	0	0
FLG	2312	broad.mit.edu	37	1	152287815	152287815	+	Missense_Mutation	SNP	C	T	T	rs147859388	by1000genomes	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:152287815C>T	uc001ezu.1	-	2	154	c.118G>A	c.(118-120)GAA>AAA	p.E40K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	40	EF-hand 1.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCCGAAATTCCTTTTCCAGA	0.328									Ichthyosis				5	78					0	0	0.00198382	0	0
NUP210L	91181	broad.mit.edu	37	1	154067584	154067584	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:154067584C>T	uc001fdw.2	-	15	2086	c.2014G>A	c.(2014-2016)GAA>AAA	p.E672K	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.E672K	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	672						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AATACCATTTCCTTCACAGAC	0.408													5	53					0	0	0.00116845	0	0
CD5L	922	broad.mit.edu	37	1	157805728	157805728	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:157805728G>A	uc001frk.3	-	3	416	c.273C>T	c.(271-273)ATC>ATT	p.I91I		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	91	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TGACTGATTGGATGAGGACCT	0.498													12	141					0	0	0.00136819	0	0
SPTA1	6708	broad.mit.edu	37	1	158639575	158639575	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:158639575G>A	uc001fst.1	-	13	1800	c.1601C>T	c.(1600-1602)ACT>ATT	p.T534I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	534	Spectrin 6.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTTGTCTACAGTCTGAAAAAA	0.403													6	53					0	0	0.00116845	0	0
OR6N2	81442	broad.mit.edu	37	1	158746824	158746824	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:158746824G>A	uc010pir.1	-	1	602	c.602C>T	c.(601-603)GCC>GTC	p.A201V		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					AGCATTAATGGCAAAGTCCAC	0.388													5	28					0	0	0.000602214	0	0
FCER1A	2205	broad.mit.edu	37	1	159272649	159272649	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:159272649G>A	uc001ftq.2	+	3	160	c.61G>A	c.(61-63)GAT>AAT	p.D21N		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	21						integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	TGCAGCTCCAGATGGCGTGTT	0.468													5	48					0	0	0.00307968	0	0
OR10J3	441911	broad.mit.edu	37	1	159283514	159283514	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:159283514G>A	uc010piu.1	-	1	936	c.936C>T	c.(934-936)TCC>TCT	p.S312S		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					TCTTCATTAAGGAGACAGAGT	0.418													4	39					0	0	0.00024832	0	0
CCDC19	25790	broad.mit.edu	37	1	159857657	159857657	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:159857657C>T	uc001fui.2	-	5	580	c.562G>A	c.(562-564)GAG>AAG	p.E188K	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.E103K|CCDC19_uc001ful.2_Missense_Mutation_p.E103K|CCDC19_uc009wtc.1_Missense_Mutation_p.E188K	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	188	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			AGCTCCTCCTCCTGCTCCATC	0.597													9	67					0	0	0.000978159	0	0
SLAMF9	89886	broad.mit.edu	37	1	159921544	159921544	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:159921544G>A	uc001fus.2	-	4	894	c.777C>T	c.(775-777)GTC>GTT	p.V259V	SLAMF9_uc009wtd.2_Silent_p.V168V|SLAMF9_uc001fut.2_3'UTR	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	259	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GTCTTTTCTGGACTCGGATGA	0.507													6	43					0	0	0.00116845	0	0
SELE	6401	broad.mit.edu	37	1	169701840	169701840	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:169701840C>T	uc001ggm.3	-	3	494	c.337G>A	c.(337-339)GAG>AAG	p.E113K	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	113	Extracellular (Potential).|C-type lectin.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					ATGTAGATCTCCACGCAGTCC	0.502													4	18					0	0	0.00024832	0	0
TNR	7143	broad.mit.edu	37	1	175375791	175375791	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:175375791G>A	uc001gkp.1	-	1	141	c.60C>T	c.(58-60)ATC>ATT	p.I20I	TNR_uc009wwu.1_Silent_p.I20I|TNR_uc010pmz.1_Silent_p.I20I	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	20					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGCCCAGAAGGATCAGGTTGA	0.552													5	57					0	0	0.00116845	0	0
PAPPA2	60676	broad.mit.edu	37	1	176526253	176526253	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:176526253C>T	uc001gkz.2	+	2	1959	c.795C>T	c.(793-795)TTC>TTT	p.F265F	PAPPA2_uc001gky.1_Silent_p.F265F|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	265					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TCTTATACTTCTCTGGGAGGC	0.572													5	30					0	0	0.000602214	0	0
ASTN1	460	broad.mit.edu	37	1	176853570	176853570	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:176853570T>C	uc001glc.2	-	19	3343	c.3131A>G	c.(3130-3132)GAA>GGA	p.E1044G	ASTN1_uc001glb.1_Missense_Mutation_p.E1044G|ASTN1_uc001gld.1_Missense_Mutation_p.E1044G	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1052	Fibronectin type-III 1.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CTCTGAGTGTTCCCACTCCAG	0.542													3	35					0	0	6.4e-05	0	0
FAM5B	57795	broad.mit.edu	37	1	177250392	177250392	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:177250392C>T	uc001glf.2	+	8	2392	c.2080C>T	c.(2080-2082)CCA>TCA	p.P694S	FAM5B_uc001glg.2_Missense_Mutation_p.P589S	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	694						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCCCTTTGACCCAGATGCTAT	0.488													6	73					0	0	0.00198382	0	0
CEP350	9857	broad.mit.edu	37	1	179989416	179989416	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:179989416C>T	uc001gnt.2	+	12	2890	c.2507C>T	c.(2506-2508)TCC>TTC	p.S836F	CEP350_uc009wxl.2_Missense_Mutation_p.S835F|CEP350_uc001gnu.2_Missense_Mutation_p.S670F	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	836						centrosome|nucleus|spindle				ovary(4)	4						GCTTCTTTGTCCAGCAGAATT	0.448													12	129					0	0	0.000978159	0	0
CACNA1E	777	broad.mit.edu	37	1	181724528	181724528	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:181724528G>C	uc001gow.2	+	28	4149	c.3984G>C	c.(3982-3984)GAG>GAC	p.E1328D	CACNA1E_uc009wxs.2_Missense_Mutation_p.E1216D|CACNA1E_uc001gox.1_Missense_Mutation_p.E554D|CACNA1E_uc009wxt.2_Missense_Mutation_p.E554D	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1328	Extracellular (Potential).|III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CAGAGAAGGAGTGCATGTAAG	0.483													4	80					0	0	0.000602214	0	0
NCF2	4688	broad.mit.edu	37	1	183543712	183543712	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:183543712C>T	uc001gqj.3	-	4	686	c.411G>A	c.(409-411)TGG>TGA	p.W137*	NCF2_uc010pod.1_Intron|NCF2_uc010poe.1_Intron|NCF2_uc001gqk.3_Nonsense_Mutation_p.W137*	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	137	TPR 3.				cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						CAGCTTTTTTCCATTCCTCCT	0.433													7	52					0	0	0.00198382	0	0
PRG4	10216	broad.mit.edu	37	1	186277191	186277191	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:186277191G>A	uc001gru.3	+	7	2391	c.2340G>A	c.(2338-2340)GGG>GGA	p.G780G	PRG4_uc001grt.3_Silent_p.G739G|PRG4_uc009wyl.2_Silent_p.G687G|PRG4_uc009wym.2_Silent_p.G646G|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	780	51; approximate.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCCCTAAGGGGACTGCTCCAA	0.602													5	76					0	0	0.000602214	0	0
CFH	3075	broad.mit.edu	37	1	196695937	196695937	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:196695937G>A	uc001gtj.3	+	14	2343	c.2103G>A	c.(2101-2103)TGG>TGA	p.W701*		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	701	Sushi 12.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						AACATGGCTGGGCCCAGCTTT	0.363													6	32					0	0	0.00116845	0	0
CFH	3075	broad.mit.edu	37	1	196697622	196697622	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:196697622G>A	uc001gtj.3	+	15	2623	c.2383G>A	c.(2383-2385)GGA>AGA	p.G795R		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	795	Sushi 13.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CTGCATAAATGGAAGATGGGA	0.338													4	21					0	0	0.000602214	0	0
CFHR5	81494	broad.mit.edu	37	1	196971782	196971782	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:196971782C>T	uc001gts.3	+	8	1446	c.1318C>T	c.(1318-1320)CCA>TCA	p.P440S		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	440	Sushi 7.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GCAATCATTACCACGCTGTGT	0.323													4	23					0	0	0.000602214	0	0
LHX9	56956	broad.mit.edu	37	1	197889123	197889123	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:197889123G>A	uc001guk.1	+	2	633	c.196G>A	c.(196-198)GAG>AAG	p.E66K	LHX9_uc001gui.1_Missense_Mutation_p.E57K|LHX9_uc001guj.1_Missense_Mutation_p.E72K	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	66					motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						GCTCAGCCCGGAGAAGCCCGC	0.662													6	67					0	0	0.00307968	0	0
PTPRC	5788	broad.mit.edu	37	1	198665998	198665998	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:198665998C>T	uc001gur.1	+	4	432	c.252C>T	c.(250-252)TCC>TCT	p.S84S	PTPRC_uc001gus.1_Silent_p.S84S|PTPRC_uc001gut.1_Intron|PTPRC_uc009wze.1_Intron|PTPRC_uc009wzf.1_Intron|PTPRC_uc010ppg.1_Intron|PTPRC_uc001guu.1_Silent_p.S127S|PTPRC_uc001guv.1_Intron|PTPRC_uc001guw.1_Intron	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	84	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						CCCAAGTATCCCCGGACTCTT	0.408													8	64					0	0	0.000442599	0	0
NR5A2	2494	broad.mit.edu	37	1	199996999	199996999	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:199996999G>A	uc001gvb.2	+	1	230	c.24G>A	c.(22-24)GGG>GGA	p.G8G	NR5A2_uc001gvc.2_Silent_p.G8G|NR5A2_uc009wzg.1_RNA	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	8					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					CAGATACTGGGGATTTACAAG	0.328													5	38					0	0	0.00198382	0	0
FAM58B	339521	broad.mit.edu	37	1	200182842	200182843	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:200182842_200182843CC>TT	uc009wzi.1	+	1	187_188	c.151_152CC>TT	c.(151-153)CCC>TTC	p.P51F		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	51					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					GCAGTCCATTCCCATTGCCACT	0.53													5	41					0	0	6.4e-05	0	0
FAM58B	339521	broad.mit.edu	37	1	200183219	200183219	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:200183219C>T	uc009wzi.1	+	1	564	c.528C>T	c.(526-528)GCC>GCT	p.A176A		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	176					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					CTGCCTGGGCCCTGCTGCGGG	0.632													4	30					0	0	0.00024832	0	0
LGR6	59352	broad.mit.edu	37	1	202205081	202205081	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:202205081C>T	uc001gxu.2	+	4	388	c.388C>T	c.(388-390)CCC>TCC	p.P130S	LGR6_uc001gxv.2_Missense_Mutation_p.P78S|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.P87S|LGR6_uc009xac.1_5'Flank	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	130	LRR 2.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GGGAGGAATCCCCGCAGAGGC	0.607													5	29					0	0	0.00198382	0	0
MYBPH	4608	broad.mit.edu	37	1	203138109	203138109	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:203138109C>T	uc001gzh.1	-	9	1401	c.1342G>A	c.(1342-1344)GAT>AAT	p.D448N	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	448	Ig-like C2-type 2.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		ACCCCAGAATCAAAGGGGCTG	0.562													6	51					0	0	0.00116845	0	0
AVPR1B	553	broad.mit.edu	37	1	206224959	206224959	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:206224959C>T	uc001hds.2	+	1	677	c.519C>T	c.(517-519)TCC>TCT	p.S173S		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	173	Helical; Name=4; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	TCATTTTTTCCCTGCGGGAGG	0.647													7	43					0	0	0.000274275	0	0
C1orf116	79098	broad.mit.edu	37	1	207195309	207195309	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:207195309C>T	uc001hfd.2	-	4	2059	c.1800G>A	c.(1798-1800)AAG>AAA	p.K600K	C1orf116_uc009xcb.1_Silent_p.K354K	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	600						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					GAGTCTACTCCTTCAACAGTC	0.562													5	37					0	0	0.000602214	0	0
CD34	947	broad.mit.edu	37	1	208062063	208062063	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:208062063C>T	uc001hgw.1	-	7	1194	c.936G>A	c.(934-936)ATG>ATA	p.M312I	CD34_uc001hgv.1_Missense_Mutation_p.M154I|CD34_uc001hgx.1_Missense_Mutation_p.M312I|CD34_uc010psj.1_Missense_Mutation_p.M177I	NM_001025109	NP_001020280	P28906	CD34_HUMAN	CD34 antigen isoform a	312	Cytoplasmic (Potential).				cell-cell adhesion|leukocyte migration|regulation of immune response	integral to membrane	carbohydrate binding			ovary(1)	1						TGCGGCGATTCATCAGGAAAT	0.557													10	121					0	0	0.000978159	0	0
IRF6	3664	broad.mit.edu	37	1	209974602	209974602	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:209974602C>T	uc001hhq.1	-	3	420	c.157G>A	c.(157-159)GAA>AAA	p.E53K	IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Missense_Mutation_p.E53K	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	53	IRF tryptophan pentad repeat.				cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		ATGGTATTTTCCTCTTCTTGT	0.423										HNSCC(57;0.16)			8	59					0	0	0.00307968	0	0
NEK2	4751	broad.mit.edu	37	1	211843679	211843679	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:211843679G>A	uc001hir.1	-	5	855	c.709C>T	c.(709-711)CCA>TCA	p.P237S	NEK2_uc001hiq.1_Missense_Mutation_p.P237S|NEK2_uc001his.3_Missense_Mutation_p.P237S|NEK2_uc001hit.1_RNA	NM_002497	NP_002488	P51955	NEK2_HUMAN	NIMA-related kinase 2	237	Protein kinase.				cell division|centrosome separation|G2/M transition of mitotic cell cycle|meiosis|protein autophosphorylation|regulation of mitosis	centrosome|condensed chromosome kinetochore|cytosol|nucleolus	ATP binding|metal ion binding|protein binding|protein phosphatase binding|protein serine/threonine kinase activity			breast(2)|stomach(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.00203)|all cancers(67;0.0339)|Epithelial(68;0.0546)		TAACGGTATGGAATTCGCCTG	0.373													14	96					0	0	0.00316338	0	0
PTPN14	5784	broad.mit.edu	37	1	214549719	214549719	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:214549719G>A	uc001hkk.1	-	15	3021	c.2750C>T	c.(2749-2751)CCA>CTA	p.P917L	PTPN14_uc010pty.1_Missense_Mutation_p.P818L	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	917	Tyrosine-protein phosphatase.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		CTTTTTCTTTGGAATTTGCTC	0.448													6	61					0	0	0.00116845	0	0
SPATA17	128153	broad.mit.edu	37	1	218036175	218036175	+	Silent	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:218036175A>G	uc001hlh.1	+	10	1091	c.1065A>G	c.(1063-1065)TCA>TCG	p.S355S	SPATA17_uc001hli.2_Silent_p.S355S	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	355						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		AATTATATTCAAAAGCTGGAC	0.303													14	139					0	0	0.000566183	0	0
SNAP47	116841	broad.mit.edu	37	1	227947071	227947071	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:227947071C>T	uc001hrf.2	+	3	1422	c.1008C>T	c.(1006-1008)ATC>ATT	p.I336I	SNAP47_uc001hqz.2_Silent_p.I291I|SNAP47_uc001hra.2_Silent_p.I94I|SNAP47_uc001hrd.2_Silent_p.I336I|SNAP47_uc001hre.2_Silent_p.I94I|SNAP47_uc001hrg.1_Silent_p.I291I	NM_053052	NP_444280	Q5SQN1	SNP47_HUMAN	synaptosomal-associated protein, 47kDa	336						endomembrane system|membrane|perinuclear region of cytoplasm				ovary(1)	1						CAGAGGTTATCCCCATTTTAG	0.488													8	66					0	0	0.00307968	0	0
CAPN9	10753	broad.mit.edu	37	1	230903338	230903338	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:230903338G>A	uc001htz.1	+	5	701	c.588G>A	c.(586-588)ATG>ATA	p.M196I	CAPN9_uc009xfg.1_Missense_Mutation_p.M133I|CAPN9_uc001hua.1_Missense_Mutation_p.M196I	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	196	Calpain catalytic.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				TCGAGGCCATGGAAGACTTCA	0.557													5	42					0	0	0.000602214	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394292	233394292	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:233394292C>T	uc001hvl.2	-	5	1551	c.1316G>A	c.(1315-1317)GGG>GAG	p.G439E	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	439						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ACCTCCTCCCCCACCCTCAGG	0.562													4	45					0	0	0.00116845	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394693	233394693	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:233394693C>T	uc001hvl.2	-	5	1150	c.915G>A	c.(913-915)CAG>CAA	p.Q305Q	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	305						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TCAGGCTGTCCTGAGGTGACT	0.577													7	37					0	0	0.00307968	0	0
LYST	1130	broad.mit.edu	37	1	235955205	235955205	+	Missense_Mutation	SNP	C	T	T	rs111722949	byFrequency	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:235955205C>T	uc001hxj.2	-	12	4512	c.4337G>A	c.(4336-4338)CGG>CAG	p.R1446Q	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_Intron|LYST_uc001hxl.1_Missense_Mutation_p.R1446Q	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1446					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TGAAAGCAGCCGATGGGGAAA	0.493									Chediak-Higashi_syndrome				6	45					0	0	0.00116845	0	0
ZP4	57829	broad.mit.edu	37	1	238050838	238050838	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:238050838C>G	uc001hym.2	-	5	577	c.577G>C	c.(577-579)GGC>CGC	p.G193R	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	193	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			GAGAAATGGCCCTCTCGGGTA	0.522													7	37					0	0	0.000274275	0	0
OR2W5	441932	broad.mit.edu	37	1	247654686	247654686	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:247654686G>A	uc001icz.1	+	1	257	c.257G>A	c.(256-258)GGG>GAG	p.G86E		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	86					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TGGAACCTGGGGGGTCCAGAG	0.542													5	27					0	0	0.000602214	0	0
OR2G2	81470	broad.mit.edu	37	1	247752201	247752201	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:247752201C>T	uc010pyy.1	+	1	540	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TGGATCATTTCATCTGCGAGG	0.542													9	50					0	0	0.000274275	0	0
OR2L2	26246	broad.mit.edu	37	1	248201654	248201654	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:248201654C>T	uc001idw.2	+	1	181	c.85C>T	c.(85-87)CTC>TTC	p.L29F	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CGTATTCACCCTCATTTTTCT	0.368													6	71					0	0	0.00116845	0	0
OR2M5	127059	broad.mit.edu	37	1	248308789	248308789	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:248308789C>T	uc010pze.1	+	1	340	c.340C>T	c.(340-342)CTG>TTG	p.L114L		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			CGAATGCTTTCTGTTGGCTGT	0.438													15	99					0	0	0.00244969	0	0
OR2M2	391194	broad.mit.edu	37	1	248344204	248344204	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:248344204G>A	uc010pzf.1	+	1	917	c.917G>A	c.(916-918)GGA>GAA	p.G306E		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AAGATCTTAGGAAAGGGCAAG	0.398													7	103					0	0	0.00307968	0	0
OR2M7	391196	broad.mit.edu	37	1	248487354	248487354	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:248487354C>T	uc010pzk.1	-	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGGCTATTTCCCGAGACCCA	0.433													5	74					0	0	0.00116845	0	0
OR14C36	127066	broad.mit.edu	37	1	248512922	248512922	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:248512922C>T	uc010pzl.1	+	1	846	c.846C>T	c.(844-846)CTC>CTT	p.L282L		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGCCTCCCCTCTTTAACCCTA	0.403													5	72					0	0	0.00116845	0	0
OR2G6	391211	broad.mit.edu	37	1	248685183	248685183	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:248685183C>T	uc001ien.1	+	1	236	c.236C>T	c.(235-237)CCA>CTA	p.P79L		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	79	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGTGTTGCCCCACAGTTGCTG	0.507													5	35					0	0	0.000602214	0	0
OR2T11	127077	broad.mit.edu	37	1	248790166	248790166	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:248790166G>A	uc001ier.1	-	1	264	c.264C>T	c.(262-264)ATC>ATT	p.I88I		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CAAAGGAAATGATCTTCTCTT	0.493													5	24					0	0	0.000602214	0	0
TUBB8	347688	broad.mit.edu	37	10	93360	93360	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:93360C>T	uc001ifi.2	-	4	972	c.972G>A	c.(970-972)AGG>AGA	p.R324R	TUBB8_uc009xhe.2_Silent_p.R287R|TUBB8_uc010pzs.1_Silent_p.R252R	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	324					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		CATCCACCTCCCTCATGGGCA	0.517													7	68					0	0	0.00198382	0	0
FBXO18	84893	broad.mit.edu	37	10	5948022	5948022	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:5948022C>T	uc001iis.2	+	3	275	c.180C>T	c.(178-180)ATC>ATT	p.I60I	FBXO18_uc001iir.2_5'UTR|FBXO18_uc009xig.2_5'UTR|FBXO18_uc001iit.2_Silent_p.I111I	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	60					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						AAAGATGCATCCCTGAGTTCT	0.488													4	35					0	0	0.000602214	0	0
UPF2	26019	broad.mit.edu	37	10	11971937	11971937	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:11971937G>A	uc001ila.2	-	20	4210	c.3736C>T	c.(3736-3738)CGT>TGT	p.R1246C	UPF2_uc001ilb.2_Missense_Mutation_p.R1246C|UPF2_uc001ilc.2_Missense_Mutation_p.R1246C	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	1246	Sufficient for interaction with UPF1 C- terminus.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				CGCCTCTCACGATTGGTGTTT	0.463													30	223					0	0	0.00283554	0	0
ITGA8	8516	broad.mit.edu	37	10	15573084	15573084	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:15573084C>T	uc001ioc.1	-	28	2947	c.2947G>A	c.(2947-2949)GAT>AAT	p.D983N	ITGA8_uc010qcb.1_Missense_Mutation_p.D968N	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	983	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GCTGGCTGATCTGTATAAGGC	0.303													9	65					0	0	0.000673444	0	0
PLXDC2	84898	broad.mit.edu	37	10	20453442	20453442	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:20453442A>G	uc001iqg.1	+	7	1466	c.829A>G	c.(829-831)AAA>GAA	p.K277E	PLXDC2_uc001iqh.1_Missense_Mutation_p.K228E|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	277	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TCATCCAGTGAAAGTCGGACT	0.448													3	24					0	0	0.00024832	0	0
NEBL	10529	broad.mit.edu	37	10	21098760	21098760	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:21098760C>T	uc001iqi.2	-	25	2983	c.2586G>A	c.(2584-2586)CAG>CAA	p.Q862Q	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	862	Linker.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GACTTCTAGACTGAATATTGT	0.423													5	32					0	0	0.00116845	0	0
MKX	283078	broad.mit.edu	37	10	27964240	27964240	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:27964240C>T	uc001ity.3	-	7	1202	c.977G>A	c.(976-978)GGA>GAA	p.G326E	MKX_uc001itx.3_Missense_Mutation_p.G326E	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	326					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCTGGTAGTTCCCTGCAGTTT	0.468													6	61					0	0	0.00307968	0	0
MKX	283078	broad.mit.edu	37	10	27964465	27964465	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:27964465G>A	uc001ity.3	-	6	1082	c.857C>T	c.(856-858)TCC>TTC	p.S286F	MKX_uc001itx.3_Missense_Mutation_p.S286F	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	286					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ACCCTTATTGGATCCGTTTTC	0.378													5	26					0	0	0.000602214	0	0
BMS1	9790	broad.mit.edu	37	10	43288439	43288439	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:43288439C>T	uc001jaj.2	+	8	1294	c.936C>T	c.(934-936)TTC>TTT	p.F312F		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	312					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						ACATCAGTTTCCTCCCAGACC	0.493													8	68					0	0	0.00307968	0	0
ZNF239	8187	broad.mit.edu	37	10	44053048	44053048	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:44053048C>T	uc001jaw.3	-	2	1133	c.480G>A	c.(478-480)TGG>TGA	p.W160*	ZNF239_uc001jax.3_Nonsense_Mutation_p.W160*|ZNF239_uc009xmj.2_Nonsense_Mutation_p.W160*|ZNF239_uc009xmk.2_Nonsense_Mutation_p.W160*	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	160					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						CCTGTGATTTCCATCCATGAA	0.448													6	41					0	0	0.00116845	0	0
ALOX5	240	broad.mit.edu	37	10	45938581	45938581	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:45938581G>A	uc001jce.2	+	10	1467	c.1368G>A	c.(1366-1368)AAG>AAA	p.K456K	ALOX5_uc009xmt.2_Splice_Site_p.A425_splice|ALOX5_uc010qfg.1_Silent_p.K456K	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	456	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	AGGCCATCAAGGCCCGGGGCA	0.652													4	78					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	10	49313302	49313302	+	RNA	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:49313302G>A	uc009xny.1	-	3		c.414C>T								Homo sapiens cDNA, FLJ99963.																		CACATGCTGGGATCACTGCCA	0.438													4	15					0	0	0.00024832	0	0
FRMPD2	143162	broad.mit.edu	37	10	49420116	49420116	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:49420116A>G	uc001jgi.2	-	13	1599	c.1492T>C	c.(1492-1494)TAC>CAC	p.Y498H	FRMPD2_uc001jgh.2_Missense_Mutation_p.Y466H|FRMPD2_uc001jgj.2_Missense_Mutation_p.Y476H	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	498	FERM.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GCTGGGATGTAATCTTCAACG	0.547													3	22					0	0	0.000602214	0	0
AGAP7	653268	broad.mit.edu	37	10	51472635	51472635	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:51472635G>A	uc001jio.2	-	4	471	c.345C>T	c.(343-345)TTC>TTT	p.F115F	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	115					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						ATTGTTGACTGAAATGCACAG	0.358													10	134					0	0	0.00185496	0	0
MBL2	4153	broad.mit.edu	37	10	54530441	54530441	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:54530441C>T	uc001jjt.2	-	2	358	c.293G>A	c.(292-294)GGA>GAA	p.G98E		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	98	Collagen-like.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						CGGACTTTTTCCAGGGTCTCC	0.577													4	37					0	0	0.00024832	0	0
PCDH15	65217	broad.mit.edu	37	10	55996643	55996643	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:55996643G>A	uc001jju.1	-	9	1320	c.925C>T	c.(925-927)CAG>TAG	p.Q309*	PCDH15_uc010qhq.1_Nonsense_Mutation_p.Q314*|PCDH15_uc010qhr.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qhs.1_Nonsense_Mutation_p.Q314*|PCDH15_uc010qht.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qhu.1_Nonsense_Mutation_p.Q309*|PCDH15_uc001jjv.1_Nonsense_Mutation_p.Q287*|PCDH15_uc010qhv.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qhw.1_Nonsense_Mutation_p.Q272*|PCDH15_uc010qhx.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qhy.1_Nonsense_Mutation_p.Q314*|PCDH15_uc010qhz.1_Nonsense_Mutation_p.Q309*|PCDH15_uc010qia.1_Nonsense_Mutation_p.Q287*|PCDH15_uc010qib.1_Nonsense_Mutation_p.Q287*|PCDH15_uc001jjw.2_Nonsense_Mutation_p.Q309*	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	309	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTCCGGTCCTGATCAATGGCT	0.388										HNSCC(58;0.16)			8	71					0	0	0.000978159	0	0
FAM13C	220965	broad.mit.edu	37	10	61112165	61112165	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:61112165C>T	uc001jkn.2	-	4	323	c.189G>A	c.(187-189)TGG>TGA	p.W63*	FAM13C_uc001jko.2_Nonsense_Mutation_p.W63*|FAM13C_uc010qid.1_5'UTR|FAM13C_uc010qie.1_5'UTR|FAM13C_uc010qif.1_Nonsense_Mutation_p.W85*|FAM13C_uc001jkp.2_5'UTR	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	63										ovary(2)	2						GCTGCGGCTCCCAAGAGGGCG	0.532													4	26					0	0	0.00024832	0	0
ANK3	288	broad.mit.edu	37	10	61829548	61829548	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:61829548G>A	uc001jky.2	-	37	11283	c.11091C>T	c.(11089-11091)TCC>TCT	p.S3697S	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3697					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGCCACTACTGGATGTGCCTT	0.502													9	47					0	0	0.000442599	0	0
ANK3	288	broad.mit.edu	37	10	61831386	61831386	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:61831386C>T	uc001jky.2	-	37	9445	c.9253G>A	c.(9253-9255)GGA>AGA	p.G3085R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3085					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCTTTCCCTCCCTCTGTCTGG	0.413													6	62					0	0	0.00116845	0	0
ANK3	288	broad.mit.edu	37	10	61832672	61832672	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:61832672C>T	uc001jky.2	-	37	8159	c.7967G>A	c.(7966-7968)GGA>GAA	p.G2656E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2656					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAAGCCTTGTCCATCAGGGCC	0.557													4	27					0	0	0.00024832	0	0
ANK3	288	broad.mit.edu	37	10	61834915	61834915	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:61834915C>T	uc001jky.2	-	37	5916	c.5724G>A	c.(5722-5724)ATG>ATA	p.M1908I	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1908					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGTCCTCTTTCATTTCAGCTA	0.443													5	35					0	0	0.000602214	0	0
ANK3	288	broad.mit.edu	37	10	61932897	61932897	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:61932897C>T	uc001jky.2	-	19	2424	c.2232G>A	c.(2230-2232)AAG>AAA	p.K744K	ANK3_uc001jkx.2_5'Flank|ANK3_uc010qih.1_Silent_p.K727K|ANK3_uc001jkz.3_Silent_p.K738K|ANK3_uc001jlb.1_Silent_p.K273K|ANK3_uc001jlc.1_Silent_p.K405K	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	744	ANK 21.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AATTAACAATCTTGATATTTC	0.338													4	24					0	0	0.00024832	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62648405	62648405	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:62648405G>A	uc001jli.2	-	7	1459	c.1021C>T	c.(1021-1023)CCT>TCT	p.P341S	RHOBTB1_uc001jlh.2_Missense_Mutation_p.P341S|RHOBTB1_uc001jlj.2_Missense_Mutation_p.P341S|RHOBTB1_uc001jlk.2_Missense_Mutation_p.P341S|RHOBTB1_uc009xpe.1_Missense_Mutation_p.P279S|RHOBTB1_uc001jll.2_Missense_Mutation_p.P91S	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	341	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					TCGGCCTGAGGAATCCTAGGC	0.572													5	28					0	0	0.000602214	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687279	68687279	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:68687279C>T	uc001jmz.1	+	2	1155	c.605C>T	c.(604-606)GCT>GTT	p.A202V	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.A202V	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	202	Extracellular (Potential).|LRR 6.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AATGTCTTTGCTGGCATGATC	0.478													10	73					0	0	0.000442599	0	0
CTNNA3	29119	broad.mit.edu	37	10	69366766	69366766	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:69366766C>T	uc009xpn.1	-	3	264	c.141G>A	c.(139-141)AGG>AGA	p.R47R	CTNNA3_uc001jmw.2_Silent_p.R47R|CTNNA3_uc001jmx.3_Silent_p.R47R|CTNNA3_uc009xpo.1_5'UTR|CTNNA3_uc001jna.2_Silent_p.R59R	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	47					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						GTCCTTTTTTCCTGCTGGAAG	0.418													4	37					0	0	0.00024832	0	0
PRF1	5551	broad.mit.edu	37	10	72360277	72360277	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:72360277C>T	uc009xqg.2	-	2	543	c.382G>A	c.(382-384)GAC>AAC	p.D128N	PRF1_uc001jrf.3_Missense_Mutation_p.D128N	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	128	MACPF.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						ACCTTCCAGTCGTTGCGGATG	0.632			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				4	21					0	0	0.00116845	0	0
USP54	159195	broad.mit.edu	37	10	75302868	75302868	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:75302868G>A	uc001juo.2	-	4	414	c.397C>T	c.(397-399)CAC>TAC	p.H133Y	USP54_uc001jum.2_5'Flank|USP54_uc001jun.2_RNA|USP54_uc001jup.2_Missense_Mutation_p.H133Y|USP54_uc010qkl.1_Missense_Mutation_p.H133Y|USP54_uc001juq.1_5'Flank	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	133					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					ATGTGGAAGTGAATTCTCATC	0.378													6	60					0	0	0.00198382	0	0
MYST4	23522	broad.mit.edu	37	10	76790634	76790634	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:76790634C>T	uc001jwn.1	+	18	6545	c.6052C>T	c.(6052-6054)CAA>TAA	p.Q2018*	MYST4_uc001jwo.1_Nonsense_Mutation_p.Q1726*|MYST4_uc001jwp.1_Nonsense_Mutation_p.Q1835*	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	2018	Interaction with RUNX1 and RUNX2.|Met-rich.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TCAAACGCCCCAATACCCTAT	0.532			T	CREBBP	AML								5	48					0	0	0.00116845	0	0
LRIT2	340745	broad.mit.edu	37	10	85984764	85984764	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:85984764C>T	uc001kcy.2	-	2	225	c.217G>A	c.(217-219)GGG>AGG	p.G73R	LRIT2_uc010qmc.1_Missense_Mutation_p.G73R	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	73						integral to membrane				ovary(2)	2						ATGAAAGACCCTTGGGGCATC	0.463													5	59					0	0	0.000602214	0	0
FAM35A	54537	broad.mit.edu	37	10	88939874	88939874	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:88939874C>T	uc001kei.3	+	7	2120	c.2006C>T	c.(2005-2007)CCT>CTT	p.P669L	FAM35A_uc001kej.3_Missense_Mutation_p.P115L	NM_019054	NP_061927	Q86V20	FA35A_HUMAN	hypothetical protein LOC54537	669										ovary(2)|skin(2)	4						CTGGCATTTCCTATTACAGCA	0.343													9	71					0	0	0.000673444	0	0
LIPA	3988	broad.mit.edu	37	10	90983485	90983485	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:90983485G>A	uc001kga.3	-	7	946	c.778C>T	c.(778-780)CTC>TTC	p.L260F	LIPA_uc001kgb.3_Missense_Mutation_p.L204F|LIPA_uc001kgc.3_Missense_Mutation_p.L262F|LIPA_uc010qnf.1_Missense_Mutation_p.L65F|LIPA_uc009xtq.2_Missense_Mutation_p.L260F|LIPA_uc009xtr.1_RNA	NM_000235	NP_000226	P38571	LICH_HUMAN	lipase A precursor	260					lipid catabolic process	lysosome	lipase activity|sterol esterase activity				0		Colorectal(252;0.0162)		GBM - Glioblastoma multiforme(2;0.00406)		AGAAAACAGAGATTTCCACAG	0.353													10	73					0	0	0.000673444	0	0
IFIT1B	439996	broad.mit.edu	37	10	91143829	91143829	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:91143829C>T	uc001kgh.2	+	2	839	c.759C>T	c.(757-759)GTC>GTT	p.V253V	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	253	TPR 5.						binding				0						AGGCCTATGTCTTTCAATATG	0.453													7	109					0	0	0.00307968	0	0
SLC16A12	387700	broad.mit.edu	37	10	91222168	91222168	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:91222168G>A	uc001kgm.2	-	3	469	c.78C>T	c.(76-78)TTC>TTT	p.F26F		NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	26	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						TGGTAACAAGGAAACAGCCAG	0.438													5	23					0	0	0.00116845	0	0
PANK1	53354	broad.mit.edu	37	10	91359139	91359139	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:91359139G>A	uc001kgp.1	-	3	1336	c.1180C>T	c.(1180-1182)CCT>TCT	p.P394S	PANK1_uc001kgn.1_Missense_Mutation_p.P169S|PANK1_uc001kgo.1_Missense_Mutation_p.P169S|PANK1_uc009xtu.1_Missense_Mutation_p.P196S	NM_148977	NP_683878	Q8TE04	PANK1_HUMAN	pantothenate kinase 1 isoform alpha	394					coenzyme A biosynthetic process|pantothenate metabolic process	cytosol|nucleus	ATP binding|pantothenate kinase activity				0					Bezafibrate(DB01393)	CACAATTCAGGATTTGTGGGA	0.453													10	53					0	0	0.000442599	0	0
HHEX	3087	broad.mit.edu	37	10	94450089	94450089	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:94450089C>T	uc001kid.2	+	1	409	c.346C>T	c.(346-348)CGC>TGC	p.R116C		NM_002729	NP_002720	Q03014	HHEX_HUMAN	hematopoietically expressed homeobox	116	Pro-rich.				anterior/posterior pattern formation|B cell differentiation|cell cycle|DNA conformation change|negative regulation of angiogenesis|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of vascular endothelial growth factor receptor signaling pathway|poly(A)+ mRNA export from nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|Wnt receptor signaling pathway	cytoplasm|nucleus|protein-DNA complex	DNA bending activity|eukaryotic initiation factor 4E binding|protein homodimerization activity|repressing transcription factor binding|sequence-specific DNA binding|TBP-class protein binding|transcription regulatory region DNA binding			ovary(1)	1						CGCCCTGCTCCGCCACGACCC	0.776													6	72					0	0	0.00198382	0	0
DNTT	1791	broad.mit.edu	37	10	98078267	98078267	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:98078267G>A	uc001kmf.2	+	2	532	c.362G>A	c.(361-363)GGA>GAA	p.G121E	DNTT_uc001kmg.2_Missense_Mutation_p.G121E	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	121	BRCT.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		GAAATGACAGGAAAACACCAG	0.373													4	20					0	0	0.000602214	0	0
TLL2	7093	broad.mit.edu	37	10	98180773	98180773	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:98180773G>A	uc001kml.1	-	7	1089	c.863C>T	c.(862-864)TCT>TTT	p.S288F	TLL2_uc009xvf.1_Missense_Mutation_p.S236F	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	288	Metalloprotease (By similarity).				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		CTCTCCCAGAGAGCTCACTTC	0.468													7	45					0	0	0.00307968	0	0
C10orf12	26148	broad.mit.edu	37	10	98743944	98743944	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:98743944C>T	uc001kmv.2	+	1	2904	c.2797C>T	c.(2797-2799)CCT>TCT	p.P933S		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	933										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		GAAGAAATTTCCTGGAGCTAC	0.473													7	51					0	0	0.000274275	0	0
C10orf12	26148	broad.mit.edu	37	10	98744039	98744039	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:98744039T>G	uc001kmv.2	+	1	2999	c.2892T>G	c.(2890-2892)AGT>AGG	p.S964R		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	964										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AAGATGGCAGTGATGTCAGCC	0.493													9	65					0	0	0.000274275	0	0
HIF1AN	55662	broad.mit.edu	37	10	102296354	102296354	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:102296354G>A	uc001krj.3	+	2	439	c.364G>A	c.(364-366)GAA>AAA	p.E122K		NM_017902	NP_060372	Q9NWT6	HIF1N_HUMAN	hypoxia-inducible factor 1, alpha subunit	122	Interaction with VHL.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|protein binding				0		Colorectal(252;0.234)		Epithelial(162;6.75e-10)|all cancers(201;4.88e-08)		CAACAGGGAAGAAATGAAATT	0.428													7	42					0	0	0.00307968	0	0
C10orf2	56652	broad.mit.edu	37	10	102749612	102749612	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:102749612C>T	uc001ksf.2	+	2	2130	c.1455C>T	c.(1453-1455)TTC>TTT	p.F485F	MRPL43_uc001kry.1_5'Flank|MRPL43_uc010qpu.1_5'Flank|MRPL43_uc001krz.1_5'Flank|MRPL43_uc001ksa.1_5'Flank|MRPL43_uc001ksb.1_5'Flank|MRPL43_uc001ksd.1_5'Flank|MRPL43_uc001ksc.2_5'Flank|MRPL43_uc001kse.2_5'Flank|C10orf2_uc001ksg.2_Silent_p.F485F|C10orf2_uc001ksi.2_Silent_p.F31F|C10orf2_uc010qpv.1_Silent_p.F31F|C10orf2_uc001ksh.2_RNA	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	485	SF4 helicase.				cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		CCCTCTATTTCATGACTTTCC	0.532													7	78					0	0	0.000442599	0	0
COL17A1	1308	broad.mit.edu	37	10	105815129	105815129	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:105815129C>T	uc001kxr.2	-	19	1886	c.1717_splice	c.e19+1	p.G573_splice	COL17A1_uc010qqv.1_Splice_Site_p.G557_splice	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen						cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CATGGCAATACCTTTAGGGCC	0.378													7	55					0	0	0.00307968	0	0
GFRA1	2674	broad.mit.edu	37	10	117849293	117849293	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:117849293C>T	uc001lcj.2	-	9	1854	c.1156G>A	c.(1156-1158)GAA>AAA	p.E386K	GFRA1_uc001lci.2_Missense_Mutation_p.E381K|GFRA1_uc009xyr.2_Missense_Mutation_p.E381K	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	386					axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		GTGGGAATTTCATTCTCAGAC	0.577													8	41					0	0	0.000274275	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122334721	122334721	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:122334721A>G	uc001lev.1	+	6	876	c.524A>G	c.(523-525)AAG>AGG	p.K175R	PPAPDC1A_uc010qtd.1_Missense_Mutation_p.K175R|PPAPDC1A_uc009xzl.1_Missense_Mutation_p.K112R|PPAPDC1A_uc001lew.1_Missense_Mutation_p.R82G|PPAPDC1A_uc001lex.1_Intron|PPAPDC1A_uc001ley.1_Missense_Mutation_p.K54R	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	175					phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		GGGCGGGGAAAGAGCTGGCGG	0.587													7	42					0	0	0.00198382	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122348837	122348837	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:122348837C>T	uc001lev.1	+	7	991	c.639C>T	c.(637-639)ATC>ATT	p.I213I	PPAPDC1A_uc009xzl.1_Silent_p.I150I|PPAPDC1A_uc001lew.1_3'UTR|PPAPDC1A_uc001lex.1_Missense_Mutation_p.S63L|PPAPDC1A_uc001ley.1_Silent_p.I92I	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	213	Helical; (Potential).				phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		GTGGAGTCATCGGCCTCATTT	0.468													8	124					0	0	0.000442599	0	0
FGFR2	2263	broad.mit.edu	37	10	123256058	123256058	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:123256058C>A	uc010qtk.1	-	14	2498	c.1851G>T	c.(1849-1851)TTG>TTT	p.L617F	FGFR2_uc010qtg.1_Missense_Mutation_p.L505F|FGFR2_uc010qth.1_Missense_Mutation_p.L502F|FGFR2_uc010qti.1_Missense_Mutation_p.L528F|FGFR2_uc010qtj.1_Missense_Mutation_p.L618F|FGFR2_uc010qtl.1_Missense_Mutation_p.L501F|FGFR2_uc010qtm.1_Missense_Mutation_p.L500F|FGFR2_uc001lfl.3_Missense_Mutation_p.L618F|FGFR2_uc001lfm.2_Missense_Mutation_p.L529F|FGFR2_uc001lfg.3_Missense_Mutation_p.L225F	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	617	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	TTTGGGAAGCCAAGTACTCCA	0.453		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				15	151					1.01871e-10	2.31428e-10	0.00121646	1	0
TACC2	10579	broad.mit.edu	37	10	123984295	123984295	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:123984295C>T	uc001lfv.2	+	12	7961	c.7601C>T	c.(7600-7602)TCC>TTC	p.S2534F	TACC2_uc001lfw.2_Missense_Mutation_p.S680F|TACC2_uc009xzx.2_Missense_Mutation_p.S2489F|TACC2_uc010qtv.1_Missense_Mutation_p.S2538F|TACC2_uc001lfx.2_Missense_Mutation_p.S238F|TACC2_uc001lfy.2_Missense_Mutation_p.S234F|TACC2_uc001lfz.2_Missense_Mutation_p.S612F|TACC2_uc001lga.2_Missense_Mutation_p.S612F|TACC2_uc009xzy.2_Missense_Mutation_p.S624F|TACC2_uc001lgb.2_Missense_Mutation_p.S569F|TACC2_uc010qtw.1_Missense_Mutation_p.S629F	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2534						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ATTGGCTCCTCCTTACCTGTA	0.433													8	94					0	0	0.000442599	0	0
DMBT1	1755	broad.mit.edu	37	10	124339122	124339122	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:124339122G>A	uc001lgk.1	+	10	814	c.708G>A	c.(706-708)CTG>CTA	p.L236L	DMBT1_uc001lgl.1_Silent_p.L236L|DMBT1_uc001lgm.1_Silent_p.L236L|DMBT1_uc009xzz.1_Silent_p.L236L|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Silent_p.L88L	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	236	SRCR 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CCCTGAGGCTGGTGAATGGAG	0.537													14	145					0	0	0.00400662	0	0
DMBT1	1755	broad.mit.edu	37	10	124345611	124345611	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:124345611G>A	uc001lgk.1	+	16	1601	c.1495G>A	c.(1495-1497)GGA>AGA	p.G499R	DMBT1_uc001lgl.1_Missense_Mutation_p.G489R|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.G499R|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	499	SRCR 4.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GCTGGTGAATGGAGGTGACAG	0.532													9	124					0	0	0.000274275	0	0
DMBT1	1755	broad.mit.edu	37	10	124345618	124345618	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:124345618A>G	uc001lgk.1	+	16	1608	c.1502A>G	c.(1501-1503)GAC>GGC	p.D501G	DMBT1_uc001lgl.1_Missense_Mutation_p.D491G|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.D501G|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	501	SRCR 4.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AATGGAGGTGACAGGTGTCAG	0.547													5	134					0	0	0.00116845	0	0
DMBT1	1755	broad.mit.edu	37	10	124358479	124358479	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:124358479G>A	uc001lgk.1	+	26	3252	c.3146G>A	c.(3145-3147)GGT>GAT	p.G1049D	DMBT1_uc001lgl.1_Missense_Mutation_p.G1039D|DMBT1_uc001lgm.1_Missense_Mutation_p.G550D|DMBT1_uc009xzz.1_Missense_Mutation_p.G1049D|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.G10D	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1049	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GCCCGGTTTGGTCAGGGCTCA	0.597													7	65					0	0	0.00198382	0	0
C10orf120	399814	broad.mit.edu	37	10	124457257	124457257	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:124457257G>A	uc001lgn.2	-	3	1032	c.1000C>T	c.(1000-1002)CAT>TAT	p.H334Y		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	334										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				CTTTAATAATGATAAGGAGTT	0.448													5	40					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	10	134660700	134660700	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:134660700C>T	uc010qux.1	-	34	5256	c.5256G>A	c.(5254-5256)GAG>GAA	p.E1752E		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		CCTTCAGGTCCTCGCCTCTCC	0.682													5	25					0	0	0.000602214	0	0
CYP2E1	1571	broad.mit.edu	37	10	135352316	135352316	+	Missense_Mutation	SNP	C	T	T	rs140969399		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr10:135352316C>T	uc001lnj.1	+	9	1363	c.1330C>T	c.(1330-1332)CGC>TGC	p.R444C	CYP2E1_uc001lnk.1_Missense_Mutation_p.R307C|CYP2E1_uc009ybl.1_Missense_Mutation_p.R245C|CYP2E1_uc009ybm.1_Missense_Mutation_p.R98C|CYP2E1_uc001lnl.1_Intron	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	444					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	AGGCCTGGCTCGCATGGAGTT	0.448									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				7	84					0	0	0.00198382	0	0
OR51S1	119692	broad.mit.edu	37	11	4869952	4869952	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:4869952G>A	uc010qyo.1	-	1	487	c.487C>T	c.(487-489)CTC>TTC	p.L163F		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCAGATGGAGACCCAGGCAT	0.557													8	61					0	0	0.00307968	0	0
OR51I1	390063	broad.mit.edu	37	11	5461909	5461909	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:5461909G>A	uc010qze.1	-	1	836	c.836C>T	c.(835-837)TCC>TTC	p.S279F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTAGACATTGGACATCATGAC	0.458													4	28					0	0	0.000602214	0	0
TPP1	1200	broad.mit.edu	37	11	6636403	6636403	+	Missense_Mutation	SNP	G	A	A	rs121908202	by1000genomes	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:6636403G>A	uc001mel.1	-	11	1485	c.1424C>T	c.(1423-1425)TCG>TTG	p.S475L	TAF10_uc001mej.1_5'Flank|TPP1_uc001mek.1_Missense_Mutation_p.S232L	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	475		Charge relay system.		S->A: Inactive. Impaired processing.	bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		GATTCTCACCGAGGTTCCGGA	0.542													5	62					0	0	0.00116845	0	0
OR10A2	341276	broad.mit.edu	37	11	6891596	6891596	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:6891596C>T	uc001meu.1	+	1	611	c.611C>T	c.(610-612)TCC>TTC	p.S204F		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		ATCTTGTGTTCCTATACTCAC	0.488													7	114					0	0	0.000274275	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956092	18956092	+	Silent	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:18956092A>G	uc001mpg.2	-	1	458	c.240T>C	c.(238-240)CTT>CTC	p.L80L		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	80	Helical; Name=2; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GGGAATATATAAGGCGGCCGC	0.512													9	122					0	0	0.000274275	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077810	19077810	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:19077810C>T	uc001mph.2	-	2	228	c.140G>A	c.(139-141)GGA>GAA	p.G47E		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	47	Helical; Name=1; (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						AAACCCGTTTCCTACCAGCCC	0.582													7	60					0	0	0.00198382	0	0
FBXO3	26273	broad.mit.edu	37	11	33777442	33777442	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:33777442G>A	uc001muz.2	-	5	581	c.553C>T	c.(553-555)CAG>TAG	p.Q185*	FBXO3_uc010rej.1_5'Flank|FBXO3_uc001muy.2_Nonsense_Mutation_p.Q72*|FBXO3_uc009ykb.2_RNA|FBXO3_uc001mva.1_Nonsense_Mutation_p.Q185*|FBXO3_uc001mvb.1_Nonsense_Mutation_p.Q180*|FBXO3_uc010rek.1_Intron	NM_012175	NP_036307	Q9UK99	FBX3_HUMAN	F-box only protein 3 isoform 1	185					proteolysis	nucleus	ubiquitin-protein ligase activity			pancreas(1)	1		Lung NSC(402;0.0804)		BRCA - Breast invasive adenocarcinoma(625;0.00315)|Lung(977;0.00488)|LUSC - Lung squamous cell carcinoma(625;0.008)		TGTCTCTGCTGGAATCCTCCG	0.458													4	23					0	0	0.00024832	0	0
RAG1	5896	broad.mit.edu	37	11	36595249	36595249	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:36595249C>T	uc001mwu.3	+	2	519	c.395C>T	c.(394-396)CCT>CTT	p.P132L	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	132	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GTCCATGGTCCTGTGGATGGT	0.498									Familial_Hemophagocytic_Lymphohistiocytosis				5	47					0	0	0.000602214	0	0
LRP4	4038	broad.mit.edu	37	11	46911511	46911511	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:46911511G>A	uc001ndn.3	-	15	2222	c.2076C>T	c.(2074-2076)CCC>CCT	p.P692P		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	692	Extracellular (Potential).|LDL-receptor class B 5.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		GTTGGCGCTGGGGGTGCAAGG	0.522											OREG0020948	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	35					0	0	0.000602214	0	0
TRIM48	79097	broad.mit.edu	37	11	55032390	55032390	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:55032390G>A	uc010rid.1	+	2	145	c.59G>A	c.(58-60)GGA>GAA	p.G20E		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	4						intracellular	zinc ion binding				0						ATGAATTCTGGAATCTCGCAA	0.473													7	68					0	0	0.00307968	0	0
OR5D13	390142	broad.mit.edu	37	11	55541798	55541798	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:55541798G>A	uc010ril.1	+	1	885	c.885G>A	c.(883-885)AGG>AGA	p.R295R		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				ACAGCCTTAGGAACAAAGATA	0.348													4	19					0	0	0.00024832	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756882	56756882	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:56756882C>T	uc010rjp.1	+	1	494	c.494C>T	c.(493-495)TCA>TTA	p.S165L		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TTTACATGTTCACTGTCCTTC	0.413													6	74					0	0	0.00198382	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57077369	57077369	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:57077369G>A	uc001njr.2	-	5	3128	c.2816C>T	c.(2815-2817)ACC>ATC	p.T939I	TNKS1BP1_uc001njs.2_Missense_Mutation_p.T939I|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.T390I	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	939	Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				GCTGCCATAGGTGCCGAGTGA	0.592													9	66					0	0	0.000673444	0	0
SERPING1	710	broad.mit.edu	37	11	57373926	57373926	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:57373926C>T	uc001nkp.1	+	6	1126	c.935C>T	c.(934-936)CCC>CTC	p.P312L	SERPING1_uc001nkq.1_Missense_Mutation_p.P312L|SERPING1_uc010rju.1_Missense_Mutation_p.P260L|SERPING1_uc010rjv.1_Missense_Mutation_p.P317L|SERPING1_uc001nkr.1_Missense_Mutation_p.P312L|SERPING1_uc009ymi.1_Missense_Mutation_p.P321L|SERPING1_uc009ymj.1_Missense_Mutation_p.P312L|SERPING1_uc001nks.1_Missense_Mutation_p.P3L	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	312					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						AGAATGGAACCCTTTCACTTC	0.433									Hereditary_Angioedema				4	55					0	0	0.00024832	0	0
OR6Q1	219952	broad.mit.edu	37	11	57798551	57798551	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:57798551G>A	uc010rjz.1	+	1	127	c.127G>A	c.(127-129)GAG>AAG	p.E43K	OR9Q1_uc001nmj.2_Intron	NM_001005186	NP_001005186	Q8NGQ2	OR6Q1_HUMAN	olfactory receptor, family 6, subfamily Q,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)	1		Breast(21;0.0707)|all_epithelial(135;0.142)				CACCTTGGTGGAGAATTTGGC	0.478													6	91					0	0	0.00116845	0	0
OR5B17	219965	broad.mit.edu	37	11	58125706	58125706	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:58125706G>A	uc010rke.1	-	1	837	c.837C>T	c.(835-837)ATC>ATT	p.I279I		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GCATGGGGATGATCATAGTGT	0.378													8	31					0	0	0.000274275	0	0
OR5B2	390190	broad.mit.edu	37	11	58190129	58190129	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:58190129G>A	uc010rkg.1	-	1	606	c.606C>T	c.(604-606)AGC>AGT	p.S202S		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AGATATTAAAGCTTGACATAA	0.373													5	17					0	0	0.000602214	0	0
OR5A2	219981	broad.mit.edu	37	11	59189496	59189496	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:59189496C>T	uc010rkt.1	-	1	931	c.931G>A	c.(931-933)GGG>AGG	p.G311R		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	311	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGAGAAATCCCGGGGTCCCTT	0.413													5	35					0	0	0.000602214	0	0
MS4A3	932	broad.mit.edu	37	11	59830065	59830065	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:59830065G>A	uc001nom.2	+	3	409	c.281G>A	c.(280-282)TGG>TAG	p.W94*	MS4A3_uc001non.2_Intron|MS4A3_uc001noo.2_Intron	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	94	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				TACCCGATTTGGGGTGCTGTG	0.423													7	48					0	0	0.00307968	0	0
DAGLA	747	broad.mit.edu	37	11	61511332	61511332	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:61511332C>T	uc001nsa.2	+	20	2611	c.2500C>T	c.(2500-2502)CTG>TTG	p.L834L		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	834	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		AAACCCATCCCTGAGCTCGCG	0.677													8	88					0	0	0.000274275	0	0
AHNAK	79026	broad.mit.edu	37	11	62290119	62290119	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:62290119G>A	uc001ntl.2	-	5	12070	c.11770C>T	c.(11770-11772)CGA>TGA	p.R3924*	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3924					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TCTGGGCCTCGAACATCCACA	0.483													8	133					0	0	0.000274275	0	0
INTS5	80789	broad.mit.edu	37	11	62415846	62415846	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:62415846G>A	uc001nud.2	-	2	1759	c.1706C>T	c.(1705-1707)CCC>CTC	p.P569L	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	569					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						GGCCGTGAAGGGAGGCTGTAA	0.627													4	42					0	0	0.000602214	0	0
PRDX5	25824	broad.mit.edu	37	11	64088219	64088219	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:64088219C>T	uc001nzu.2	+	3	512	c.393C>T	c.(391-393)GCC>GCT	p.A131A	PRDX5_uc001nzv.2_Intron|PRDX5_uc001nzw.2_Intron|PRDX5_uc001nzx.2_RNA	NM_012094	NP_036226	P30044	PRDX5_HUMAN	peroxiredoxin 5 isoform a precursor	131	Thioredoxin.				cell redox homeostasis|cellular response to reactive oxygen species|inflammatory response|negative regulation of apoptosis	cytosolic part|mitochondrion|peroxisome	caspase inhibitor activity|peroxidase activity|peroxiredoxin activity			breast(1)	1					Auranofin(DB00995)	TTAATGATGCCTTTGTGACTG	0.592													5	93					0	0	0.000602214	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64594561	64594561	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:64594561G>A	uc001obs.3	-	34	4350	c.4350C>T	c.(4348-4350)GGC>GGT	p.G1450G		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1450	CRIB.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						CGTTGGCAGGGCCCACGTGTA	0.607													5	59					0	0	0.000602214	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65715022	65715022	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:65715022G>A	uc001ogk.1	+	5	758	c.726G>A	c.(724-726)TCG>TCA	p.S242S	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	242											0						GGAGGGGGTCGATCTCAGAGG	0.642													8	36					0	0	0.000274275	0	0
NPAS4	266743	broad.mit.edu	37	11	66192411	66192411	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:66192411C>T	uc001ohx.1	+	7	2226	c.2050C>T	c.(2050-2052)CTG>TTG	p.L684L	NPAS4_uc010rpc.1_Silent_p.L474L	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	684					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TGTGCTCAGCCTGGACCTGAA	0.602													9	67					0	0	0.000442599	0	0
DPP3	10072	broad.mit.edu	37	11	66260376	66260376	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:66260376C>T	uc001oig.1	+	10	1240	c.1178C>T	c.(1177-1179)CCC>CTC	p.P393L	DPP3_uc001oif.1_Missense_Mutation_p.P393L|DPP3_uc010rpe.1_Missense_Mutation_p.P382L	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	393					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						ATCAACATCCCCAACTGTGAG	0.597													5	39					0	0	0.000602214	0	0
CLPB	81570	broad.mit.edu	37	11	72084003	72084003	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:72084003C>T	uc001osj.2	-	5	752	c.702G>A	c.(700-702)CTG>CTA	p.L234L	CLPB_uc010rqx.1_Silent_p.L189L|CLPB_uc010rqy.1_Intron|CLPB_uc001osk.2_Intron|CLPB_uc009ytg.2_Intron|CLPB_uc010rqz.1_Intron	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	234					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						TCCTGAACTCCAGGGCACTTG	0.577													9	153					0	0	0.000978159	0	0
P2RY6	5031	broad.mit.edu	37	11	73007869	73007869	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:73007869C>T	uc001otm.2	+	4	711	c.306C>T	c.(304-306)GTC>GTT	p.V102V	P2RY6_uc001otn.2_Silent_p.V102V|P2RY6_uc001oto.2_Silent_p.V102V|P2RY6_uc001otp.2_Silent_p.V102V|P2RY6_uc001otq.2_Silent_p.V102V|P2RY6_uc001otr.2_Silent_p.V102V|P2RY6_uc001ots.2_Silent_p.V102V	NM_176796	NP_789766	Q15077	P2RY6_HUMAN	pyrimidinergic receptor P2Y6	102	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						GCCGCCTGGTCCGCTTCCTCT	0.622													6	70					0	0	0.00116845	0	0
ODZ4	26011	broad.mit.edu	37	11	78423558	78423558	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:78423558C>T	uc001ozl.3	-	26	4486	c.4023G>A	c.(4021-4023)AAG>AAA	p.K1341K		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1341	Extracellular (Potential).|NHL 3.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CTTCTGTGGCCTTCCCACCAT	0.517													4	51					0	0	0.00024832	0	0
PRCP	5547	broad.mit.edu	37	11	82560137	82560137	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:82560137G>A	uc001ozs.2	-	6	988	c.875C>T	c.(874-876)CCT>CTT	p.P292L	PRCP_uc001ozr.2_Missense_Mutation_p.P313L	NM_005040	NP_005031	P42785	PCP_HUMAN	prolylcarboxypeptidase isoform 1 preproprotein	292	SKS domain.				blood coagulation, intrinsic pathway|proteolysis	lysosome|plasma membrane	protein binding|serine-type carboxypeptidase activity			skin(1)	1						AGAGGCATAAGGATAGTCCAC	0.403													5	31					0	0	0.000602214	0	0
DLG2	1740	broad.mit.edu	37	11	84996410	84996410	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:84996410C>T	uc001pak.2	-	4	353	c.41_splice	c.e4-1	p.D14_splice		NM_001142699	NP_001136171	Q15700	DLG2_HUMAN	chapsyn-110 isoform 1							cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCTTGGATATCTGTAAAGAAA	0.318													5	38					0	0	0.00198382	0	0
PRSS23	11098	broad.mit.edu	37	11	86519058	86519058	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:86519058C>T	uc001pcb.2	+	2	589	c.373C>T	c.(373-375)CGA>TGA	p.R125*	PRSS23_uc001pcc.1_Intron|PRSS23_uc010rts.1_Nonsense_Mutation_p.R93*	NM_007173	NP_009104	O95084	PRS23_HUMAN	protease, serine, 23 precursor	125					proteolysis	extracellular region|nucleus	serine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AGGAAAGTCTCGAAGGAAGCG	0.522													5	53					0	0	0.00198382	0	0
FAT3	120114	broad.mit.edu	37	11	92533749	92533749	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:92533749G>A	uc001pdj.3	+	9	7587	c.7570G>A	c.(7570-7572)GAT>AAT	p.D2524N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2524	Cadherin 23.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CACAGATGGTGATCCAGGGAC	0.488										TCGA Ovarian(4;0.039)			13	221					0	0	0.00185496	0	0
FAT3	120114	broad.mit.edu	37	11	92577815	92577815	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:92577815C>T	uc001pdj.3	+	18	11299	c.11282C>T	c.(11281-11283)TCC>TTC	p.S3761F	FAT3_uc001pdi.3_Missense_Mutation_p.S201F	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3761	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCACTCGATTCCCACGCGCTC	0.537										TCGA Ovarian(4;0.039)			13	129					0	0	0.00136819	0	0
CNTN5	53942	broad.mit.edu	37	11	100169975	100169975	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:100169975G>A	uc001pga.2	+	20	2806	c.2467G>A	c.(2467-2469)GAA>AAA	p.E823K	CNTN5_uc001pfz.2_Missense_Mutation_p.E823K|CNTN5_uc001pgb.2_Missense_Mutation_p.E749K|CNTN5_uc010ruk.1_Missense_Mutation_p.E94K	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	823	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TGGCTGGAAGGAAAAAATGGT	0.408													3	5					0	0	6.4e-05	0	0
MMP3	4314	broad.mit.edu	37	11	102709325	102709325	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:102709325C>T	uc001phj.1	-	8	1251	c.1186G>A	c.(1186-1188)GAA>AAA	p.E396K		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	396	Hemopexin-like 3.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	TTGTTCTTTTCCTTATCAGAA	0.413													5	31					0	0	0.00116845	0	0
MMP13	4322	broad.mit.edu	37	11	102819754	102819754	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:102819754C>T	uc001phl.2	-	7	1079	c.1051G>A	c.(1051-1053)GGT>AGT	p.G351S		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	351	Hemopexin-like 2.				collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		GAAAGCTTACCTCTGAAGATG	0.438													4	26					0	0	0.000602214	0	0
PDGFD	80310	broad.mit.edu	37	11	103780427	103780427	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:103780427G>A	uc001phq.2	-	7	1480	c.1108C>T	c.(1108-1110)CGA>TGA	p.R370*	PDGFD_uc001php.2_Nonsense_Mutation_p.R364*	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	370					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		TTCTCTTATCGAGGTGGTCTT	0.448													12	59					0	0	0.00185496	0	0
DDI1	414301	broad.mit.edu	37	11	103908034	103908034	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:103908034G>A	uc001phr.2	+	1	727	c.484G>A	c.(484-486)GAA>AAA	p.E162K	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	162					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		CCTGCTCAAGGAACGCAACCC	0.622													5	59					0	0	0.00198382	0	0
CASP4	837	broad.mit.edu	37	11	104825696	104825696	+	Silent	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:104825696A>G	uc001pid.1	-	2	113	c.40T>C	c.(40-42)TTG>CTG	p.L14L	CASP4_uc001pib.1_5'UTR|CASP4_uc009yxg.1_5'UTR|CASP4_uc010rux.1_Silent_p.L14L|CASP4_uc010ruy.1_Silent_p.L14L	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	14	CARD.				apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		AGGGATTCCAACACCTTAAGT	0.383													6	23					0	0	0.00116845	0	0
KIAA1826	84437	broad.mit.edu	37	11	105880327	105880327	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:105880327C>T	uc001piy.2	-	3	1146	c.973G>A	c.(973-975)GAA>AAA	p.E325K	KIAA1826_uc001piz.2_Missense_Mutation_p.E325K	NM_032424	NP_115800	Q8NCY6	K1826_HUMAN	hypothetical protein LOC84437	325	Potential.					nucleus				breast(1)	1		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.56e-05)|Epithelial(105;0.00432)|all cancers(92;0.0309)		CGTTCCTTTTCAATCTGCAGC	0.398													5	44					0	0	0.000602214	0	0
MPZL2	10205	broad.mit.edu	37	11	118133812	118133812	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:118133812G>A	uc001psn.2	-	2	200	c.59C>T	c.(58-60)GCT>GTT	p.A20V	MPZL2_uc001pso.2_Missense_Mutation_p.A20V|MPZL2_uc001psp.1_Missense_Mutation_p.A20V	NM_005797	NP_005788	O60487	MPZL2_HUMAN	myelin protein zero-like 2 precursor	20					anatomical structure morphogenesis|homophilic cell adhesion	cytoskeleton|integral to membrane				skin(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		AGGCCAAAGAGCTGCAATGAA	0.428													7	64					0	0	0.000274275	0	0
CD3E	916	broad.mit.edu	37	11	118184537	118184537	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:118184537G>A	uc001psq.3	+	7	724	c.468G>A	c.(466-468)AAG>AAA	p.K156K		NM_000733	NP_000724	P07766	CD3E_HUMAN	CD3E antigen, epsilon polypeptide precursor	156	Cytoplasmic (Potential).				G-protein coupled receptor protein signaling pathway|signal complex assembly|T cell costimulation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	external side of plasma membrane|integral to plasma membrane	protein heterodimerization activity|protein kinase binding|receptor signaling complex scaffold activity|receptor signaling protein activity|SH3 domain binding|T cell receptor binding|transmembrane receptor activity			ovary(2)	2	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.09e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0251)	Muromonab(DB00075)	AGAATAGAAAGGCCAAGGCCA	0.567													4	20					0	0	0.00024832	0	0
TRIM29	23650	broad.mit.edu	37	11	120008350	120008350	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:120008350G>A	uc001pwz.2	-	1	514	c.390C>T	c.(388-390)TCC>TCT	p.S130S	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	130					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		CCGAGAAAATGGACTTGCGCA	0.637													7	75					0	0	0.00307968	0	0
TECTA	7007	broad.mit.edu	37	11	121016447	121016447	+	Missense_Mutation	SNP	C	T	T	rs140869937		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:121016447C>T	uc010rzo.1	+	11	3727	c.3727C>T	c.(3727-3729)CGC>TGC	p.R1243C		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1243	VWFD 3.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TCTGTGTGGCCGCTACAACGG	0.532													7	44					0	0	0.00307968	0	0
TECTA	7007	broad.mit.edu	37	11	121028887	121028887	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:121028887A>G	uc010rzo.1	+	13	4643	c.4643A>G	c.(4642-4644)TAC>TGC	p.Y1548C		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1548	VWFD 4.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GTCTACTTCTACATTAACGAA	0.532													3	49					0	0	6.4e-05	0	0
BLID	414899	broad.mit.edu	37	11	121986461	121986461	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:121986461G>A	uc001pyf.2	-	1	463	c.170C>T	c.(169-171)CCT>CTT	p.P57L	LOC399959_uc009zba.2_Intron	NM_001001786	NP_001001786	Q8IZY5	BLID_HUMAN	BRCC2 protein	57					apoptosis	mitochondrion					0		Breast(109;0.0164)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;2.08e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.101)		AGGCAACATAGGTTCTTTGTT	0.502											OREG0021435	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	53					0	0	0.000602214	0	0
OR8G2	26492	broad.mit.edu	37	11	124096005	124096005	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:124096005C>T	uc010saf.1	+	1	608	c.608C>T	c.(607-609)TCC>TTC	p.S203F		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	203						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		CTCTCCTGCTCCAGCACCTAC	0.423													9	73					0	0	0.000274275	0	0
CDON	50937	broad.mit.edu	37	11	125893356	125893356	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr11:125893356C>A	uc009zbw.2	-	2	144	c.16G>T	c.(16-18)GGA>TGA	p.G6*	CDON_uc001qdc.3_Nonsense_Mutation_p.G6*|CDON_uc001qdd.3_5'Flank|CDON_uc009zbx.2_Nonsense_Mutation_p.G6*	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	6					cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		CATAAGGGTCCAAGATCCGGA	0.443													5	47					0.00307968	0.00688792	0.00307968	1	0
CACNA1C	775	broad.mit.edu	37	12	2714852	2714852	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:2714852T>C	uc009zdu.1	+	25	3429	c.3116T>C	c.(3115-3117)GTT>GCT	p.V1039A	CACNA1C_uc009zdv.1_Missense_Mutation_p.V1016A|CACNA1C_uc001qkb.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qkc.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qke.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qkf.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qjz.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qkd.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qkg.2_Missense_Mutation_p.V1019A|CACNA1C_uc009zdw.1_Missense_Mutation_p.V1019A|CACNA1C_uc001qkh.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qkl.2_Missense_Mutation_p.V1039A|CACNA1C_uc001qkn.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qko.2_Missense_Mutation_p.V1039A|CACNA1C_uc001qkp.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qkr.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qku.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qkq.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qks.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qkt.2_Missense_Mutation_p.V1019A|CACNA1C_uc001qka.1_Missense_Mutation_p.V554A|CACNA1C_uc001qki.1_Missense_Mutation_p.V755A|CACNA1C_uc001qkj.1_Missense_Mutation_p.V755A|CACNA1C_uc001qkk.1_Missense_Mutation_p.V755A|CACNA1C_uc001qkm.1_Missense_Mutation_p.V755A	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1039	Cytoplasmic (Potential).|III.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CAGCATGTGGTTCAGTGTGTG	0.592													4	12					0	0	0.00116845	0	0
ACRBP	84519	broad.mit.edu	37	12	6752786	6752786	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:6752786G>A	uc001qpu.1	-	6	1044	c.996C>T	c.(994-996)ATC>ATT	p.I332I	ACRBP_uc010sfg.1_Silent_p.I299I	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	332						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						TATTCTCCACGATCGAATAGC	0.597													8	56					0	0	0.000274275	0	0
MLF2	8079	broad.mit.edu	37	12	6859102	6859102	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:6859102G>A	uc010sfi.1	-	7	534	c.471C>T	c.(469-471)ATC>ATT	p.I157I	MLF2_uc001qqp.2_Silent_p.I157I|MLF2_uc009zey.1_Silent_p.I157I	NM_005439	NP_005430	Q15773	MLF2_HUMAN	myeloid leukemia factor 2	157					defense response	cytoplasm|nucleus	protein binding			large_intestine(1)	1						CCCTGTCCCGGATGTGATGCC	0.597													8	28					0	0	0.000274275	0	0
MLF2	8079	broad.mit.edu	37	12	6861215	6861215	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:6861215G>A	uc010sfi.1	-	3	119	c.56C>T	c.(55-57)CCC>CTC	p.P19L	MLF2_uc001qqp.2_Missense_Mutation_p.P19L|MLF2_uc009zey.1_Missense_Mutation_p.P19L	NM_005439	NP_005430	Q15773	MLF2_HUMAN	myeloid leukemia factor 2	19					defense response	cytoplasm|nucleus	protein binding			large_intestine(1)	1						AATAGCAAAGGGATCCCTGTG	0.522											OREG0021633	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	41					0	0	0.00116845	0	0
LRRC23	10233	broad.mit.edu	37	12	7022119	7022119	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:7022119G>A	uc001qrt.3	+	7	1376	c.984G>A	c.(982-984)CAG>CAA	p.Q328Q	LRRC23_uc001qrp.2_Silent_p.Q328Q|LRRC23_uc001qrq.2_Intron|LRRC23_uc001qrr.2_Silent_p.Q277Q|LRRC23_uc001qrs.2_Intron|LRRC23_uc009zfh.2_Intron|ENO2_uc001qru.1_5'Flank|ENO2_uc009zfi.1_5'Flank|ENO2_uc010sfq.1_5'Flank|ENO2_uc001qrv.1_5'Flank	NM_001135217	NP_001128689	Q53EV4	LRC23_HUMAN	leucine rich repeat containing 23 isoform a	328	Potential.									ovary(1)	1						AAAAGGAGCAGGAGCCTGAGC	0.537													9	100					0	0	0.000274275	0	0
CD163	9332	broad.mit.edu	37	12	7637852	7637852	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:7637852C>T	uc001qsz.3	-	11	2747	c.2619G>A	c.(2617-2619)GGG>GGA	p.G873G	CD163_uc001qta.3_Silent_p.G873G|CD163_uc009zfw.2_Silent_p.G906G	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	873	SRCR 8.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity	p.G873E(1)		ovary(6)|pancreas(1)|skin(1)	8						GGTTGATTTTCCCTTTGTCTG	0.512													4	42					0	0	0.00024832	0	0
CD163	9332	broad.mit.edu	37	12	7651494	7651494	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:7651494G>A	uc001qsz.3	-	4	876	c.748C>T	c.(748-750)CAT>TAT	p.H250Y	CD163_uc001qta.3_Missense_Mutation_p.H250Y|CD163_uc009zfw.2_Missense_Mutation_p.H250Y	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	250	SRCR 2.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TCCTCAGCATGATCACAGTTA	0.433													8	96					0	0	0.000442599	0	0
FOXJ2	55810	broad.mit.edu	37	12	8202049	8202049	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:8202049C>T	uc001qtu.2	+	9	2504	c.1419C>T	c.(1417-1419)TTC>TTT	p.F473F	FOXJ2_uc001qtt.1_Silent_p.F473F	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	473					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		TCAACCACTTCCTTACTCAGA	0.572													4	42					0	0	0.000602214	0	0
A2ML1	144568	broad.mit.edu	37	12	9000241	9000241	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:9000241G>A	uc001quz.3	+	15	1878	c.1780G>A	c.(1780-1782)GTG>ATG	p.V594M	A2ML1_uc001qva.1_Missense_Mutation_p.V174M|A2ML1_uc010sgm.1_Missense_Mutation_p.V94M	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	438						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GCTCCGGGCGGTGGATGAGAG	0.602													8	68					0	0	0.000673444	0	0
A2M	2	broad.mit.edu	37	12	9265009	9265009	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:9265009G>A	uc001qvk.1	-	3	507	c.394C>T	c.(394-396)CAG>TAG	p.Q132*	A2M_uc009zgk.1_Intron	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	132					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	TTGTCTGTCTGGACAAAGACC	0.458													4	18					0	0	0.00024832	0	0
CLEC12A	160364	broad.mit.edu	37	12	10134671	10134671	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:10134671C>T	uc001qwr.3	+	5	772	c.584C>T	c.(583-585)CCT>CTT	p.P195L	CLEC12A_uc001qwq.2_Missense_Mutation_p.P205L|CLEC12A_uc001qws.3_Missense_Mutation_p.P162L|CLEC12A_uc001qwt.2_Missense_Mutation_p.P124L	NM_138337	NP_612210	Q5QGZ9	CL12A_HUMAN	myeloid inhibitory C-type lectin-like receptor	195	Extracellular (Potential).|C-type lectin.					integral to membrane|plasma membrane	receptor activity|sugar binding			skin(1)	1						GGATTATCTCCTGAAGAAGAT	0.368													3	11					0	0	6.4e-05	0	0
PRB4	5545	broad.mit.edu	37	12	11461597	11461597	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:11461597C>T	uc001qzf.1	-	3	354	c.320G>A	c.(319-321)GGA>GAA	p.G107E	PRB4_uc001qzt.2_Missense_Mutation_p.G107E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	149	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|6.		Missing (in allele M and allele S).			extracellular region				ovary(1)	1						GGACTGGTTTCCTCCTTGTGG	0.612										HNSCC(22;0.051)			6	78					0	0	0.00198382	0	0
CREBL2	1389	broad.mit.edu	37	12	12790544	12790544	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:12790544C>T	uc001rap.1	+	3	530	c.254C>T	c.(253-255)CCT>CTT	p.P85L	CREBL2_uc009zhv.1_RNA	NM_001310	NP_001301	O60519	CRBL2_HUMAN	cAMP responsive element binding protein-like 2	85					cell cycle|signal transduction	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Prostate(47;0.0684)		BRCA - Breast invasive adenocarcinoma(232;0.0503)		GGAAAAATCCCTTCTGAAATA	0.343													3	14					0	0	6.4e-05	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716078	13716078	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:13716078T>C	uc001rbt.2	-	13	4273	c.4094A>G	c.(4093-4095)AAC>AGC	p.N1365S		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1365	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCCGGGGTTGTTGTGGTGGTG	0.592													5	29					0	0	0.000602214	0	0
GUCY2C	2984	broad.mit.edu	37	12	14766225	14766225	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:14766225C>T	uc001rcd.2	-	27	3185	c.3048G>A	c.(3046-3048)GTG>GTA	p.V1016V		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	1016	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						GTTGATTCTCCCTGGAAACAG	0.408													7	32					0	0	0.00198382	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18435178	18435178	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:18435178G>A	uc001rdt.2	+	2	279	c.163G>A	c.(163-165)GAG>AAG	p.E55K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E55K|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	55					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TCCACACTACGAGAGTGAAAT	0.398													4	20					0	0	0.00116845	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21242920	21242920	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:21242920G>A	uc010sil.1	+	16	2192	c.2127G>A	c.(2125-2127)AGG>AGA	p.R709R	LST-3TM12_uc010sim.1_Silent_p.R648R|LST-3TM12_uc010sin.1_Silent_p.R601R			Q9NPD5	SO1B3_HUMAN	SubName: Full=Liver-specific organic anion transporter 3TM13; SubName: Full=Organic anion transporter LST-3c;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TTGTTGTAAGGAAAAAATCCC	0.323													4	32					0	0	0.00024832	0	0
STK38L	23012	broad.mit.edu	37	12	27450708	27450708	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:27450708G>A	uc001rhr.2	+	2	254	c.55G>A	c.(55-57)GAA>AAA	p.E19K	STK38L_uc001rhs.2_RNA|STK38L_uc010sjm.1_Intron	NM_015000	NP_055815	Q9Y2H1	ST38L_HUMAN	serine/threonine kinase 38 like	19					intracellular protein kinase cascade|regulation of cellular component organization	actin cytoskeleton|cytoplasm	actin binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|kidney(1)	5	Colorectal(261;0.0847)					CCATACCCGGGAAAGAGTGAC	0.403													4	35					0	0	0.000602214	0	0
OVCH1	341350	broad.mit.edu	37	12	29649584	29649584	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:29649584C>T	uc001rix.1	-	2	88	c.88G>A	c.(88-90)GTC>ATC	p.V30I		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	30					proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					TTCATGTTGACCATGCGAATT	0.438													6	66					0	0	0.000274275	0	0
PKP2	5318	broad.mit.edu	37	12	33031321	33031321	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:33031321C>T	uc001rlj.3	-	3	608	c.493G>A	c.(493-495)GAT>AAT	p.D165N	PKP2_uc001rlk.3_Missense_Mutation_p.D165N|PKP2_uc010skj.1_Missense_Mutation_p.D165N	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	165					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TACTGGTAATCGCTGTGCGTG	0.597													6	57					0	0	0.00116845	0	0
ABCD2	225	broad.mit.edu	37	12	39994471	39994471	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:39994471C>T	uc001rmb.2	-	6	1974	c.1548G>A	c.(1546-1548)GGG>GGA	p.G516G		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	516	ABC transporter.|ATP (Potential).				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						GAGAACTTTTCCCACAACCAT	0.353													8	60					0	0	0.000274275	0	0
ABCD2	225	broad.mit.edu	37	12	39997808	39997808	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:39997808C>T	uc001rmb.2	-	5	1832	c.1406G>A	c.(1405-1407)GGA>GAA	p.G469E		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	469					fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						AATAACTTTTCCTGTAATTAA	0.313													4	37					0	0	0.00024832	0	0
FAM113B	91523	broad.mit.edu	37	12	47629331	47629331	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:47629331G>A	uc001rpn.2	+	4	1216	c.485G>A	c.(484-486)TGG>TAG	p.W162*	FAM113B_uc010slj.1_Nonsense_Mutation_p.W42*|FAM113B_uc001rpq.2_Nonsense_Mutation_p.W162*	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	162							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CTCCTGGTGTGGAACACGGCC	0.602													7	34					0	0	0.00307968	0	0
RPAP3	79657	broad.mit.edu	37	12	48091465	48091465	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:48091465G>A	uc001rpr.2	-	4	448	c.332C>T	c.(331-333)ACC>ATC	p.T111I	RPAP3_uc010slk.1_5'UTR|RPAP3_uc001rps.2_Missense_Mutation_p.T111I	NM_024604	NP_078880	Q9H6T3	RPAP3_HUMAN	RNA polymerase II associated protein 3 isoform	111							binding			ovary(1)	1	Lung SC(27;0.192)					AGACTCATGGGTACTATCGTC	0.353													7	55					0	0	0.00307968	0	0
TUBA1B	10376	broad.mit.edu	37	12	49523061	49523061	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:49523061C>G	uc001rtm.2	-	3	560	c.339G>C	c.(337-339)GAG>GAC	p.E113D	TUBA1B_uc001rto.2_Intron|TUBA1B_uc001rtk.2_Missense_Mutation_p.E78D|TUBA1B_uc001rtl.2_Missense_Mutation_p.E78D|TUBA1B_uc001rtn.2_Intron	NM_006082	NP_006073	P68363	TBA1B_HUMAN	tubulin, alpha, ubiquitous	113					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding				0						GGTCAATGATCTCCTTGCCAA	0.502													9	84					0	0	0.000978159	0	0
SCN8A	6334	broad.mit.edu	37	12	52188360	52188360	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:52188360G>A	uc001ryw.2	+	26	4908	c.4730G>A	c.(4729-4731)AGG>AAG	p.R1577K		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1577	IV.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TTTGCGTTGAGGCACTACTAC	0.488													4	24					0	0	0.00024832	0	0
KRT71	112802	broad.mit.edu	37	12	52943921	52943921	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:52943921C>T	uc001sao.2	-	2	618	c.548G>A	c.(547-549)GGC>GAC	p.G183D		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	183	Linker 1.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		GCTGATGTAGCCCTCGAGGAT	0.597													5	43					0	0	0.000602214	0	0
SP7	121340	broad.mit.edu	37	12	53722796	53722796	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:53722796G>A	uc001sct.2	-	2	537	c.430C>T	c.(430-432)CAT>TAT	p.H144Y	SP7_uc001scu.2_Missense_Mutation_p.H126Y|SP7_uc001scv.2_Missense_Mutation_p.H144Y	NM_152860	NP_690599	Q8TDD2	SP7_HUMAN	osterix	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATGCCTGCATGGATGCCTGCC	0.592													4	19					0	0	0.00024832	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54925126	54925126	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:54925126G>A	uc001sgc.3	+	23	2668	c.2589G>A	c.(2587-2589)CAG>CAA	p.Q863Q	NCKAP1L_uc010sox.1_Silent_p.Q405Q|NCKAP1L_uc010soy.1_Silent_p.Q813Q	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	863					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TGACCTCTCAGATTGTGGAGC	0.507													9	74					0	0	0.000978159	0	0
OR6C75	390323	broad.mit.edu	37	12	55758931	55758931	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:55758931C>T	uc010spk.1	+	1	37	c.37C>T	c.(37-39)CTT>TTT	p.L13F		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						CTTTATTCTTCTTGGATTGAC	0.353													7	71					0	0	0.000442599	0	0
KIF5A	3798	broad.mit.edu	37	12	57966430	57966430	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:57966430G>A	uc001sor.1	+	15	1845	c.1637G>A	c.(1636-1638)CGA>CAA	p.R546Q	KIF5A_uc010srr.1_Missense_Mutation_p.R457Q	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	546					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						CAGCGAAAACGAATTGCTGAG	0.572													7	57					0	0	0.000274275	0	0
DPY19L2	283417	broad.mit.edu	37	12	63991597	63991597	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:63991597C>T	uc001srp.1	-	14	1634	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	DPY19L2_uc009zqk.1_RNA	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	485					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		ACCGCTTTTTCCATGAAGTCA	0.338													9	71					0	0	0.000442599	0	0
DPY19L2	283417	broad.mit.edu	37	12	64061910	64061910	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:64061910G>A	uc001srp.1	-	1	445	c.264C>T	c.(262-264)TCC>TCT	p.S88S	DPY19L2_uc009zqk.1_RNA	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	88					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		GCTGCGCCAGGGAATTACGGA	0.612													4	40					0	0	0.000602214	0	0
PTPRB	5787	broad.mit.edu	37	12	70953209	70953209	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:70953209C>T	uc001swb.3	-	16	4004	c.3974G>A	c.(3973-3975)GGG>GAG	p.G1325E	PTPRB_uc010sto.1_Missense_Mutation_p.G1235E|PTPRB_uc010stp.1_Missense_Mutation_p.G1235E|PTPRB_uc001swc.3_Missense_Mutation_p.G1543E|PTPRB_uc001swa.3_Missense_Mutation_p.G1455E|PTPRB_uc001swd.3_Missense_Mutation_p.G1542E|PTPRB_uc009zrr.1_Missense_Mutation_p.G1422E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1325	Fibronectin type-III 15.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ATAGGATCTCCCTGGACGAAG	0.438													5	80					0	0	0.000602214	0	0
TSPAN8	7103	broad.mit.edu	37	12	71523180	71523180	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:71523180G>A	uc009zrt.1	-	7	753	c.591C>T	c.(589-591)TTC>TTT	p.F197F	TSPAN8_uc001swk.1_Silent_p.F197F|TSPAN8_uc001swj.1_Silent_p.F197F	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	197	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			AGTCTTTTATGAAAGAAATAC	0.259													8	155					0	0	0.000673444	0	0
LGR5	8549	broad.mit.edu	37	12	71977807	71977807	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:71977807G>A	uc001swl.2	+	18	2065	c.2017G>A	c.(2017-2019)GAA>AAA	p.E673K	LGR5_uc001swm.2_Missense_Mutation_p.E649K|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	673	Cytoplasmic (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TGCAAAATTTGAAACGAAAGC	0.468													12	247					0	0	0.00185496	0	0
LGR5	8549	broad.mit.edu	37	12	71978321	71978321	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:71978321C>T	uc001swl.2	+	18	2579	c.2531C>T	c.(2530-2532)TCA>TTA	p.S844L	LGR5_uc001swm.2_Missense_Mutation_p.S820L|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	844	Cytoplasmic (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TGGACAAGATCAAAACACCCA	0.448													14	239					0	0	0.00400662	0	0
GLIPR1	11010	broad.mit.edu	37	12	75874693	75874693	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:75874693G>A	uc001sxs.2	+	1	181	c.33G>A	c.(31-33)ATG>ATA	p.M11I	GLIPR1_uc009zsb.1_Missense_Mutation_p.M11I	NM_006851	NP_006842	P48060	GLIP1_HUMAN	GLI pathogenesis-related 1 precursor	11					cellular lipid metabolic process	extracellular region|integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3						TAGCCTGGATGGTTTCTTTTG	0.453													7	25					0	0	0.00307968	0	0
MYF5	4617	broad.mit.edu	37	12	81111303	81111303	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:81111303C>T	uc001szg.2	+	1	596	c.461C>T	c.(460-462)TCG>TTG	p.S154L		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	154					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CAGAGCTGCTCGGAGCCCACC	0.542													10	98					0	0	0.000978159	0	0
RASSF9	9182	broad.mit.edu	37	12	86199395	86199395	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:86199395G>A	uc001taf.1	-	2	732	c.393C>T	c.(391-393)GCC>GCT	p.A131A		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	131					endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						GCACTAATTTGGCTTCAGCTG	0.418													7	128					0	0	0.00198382	0	0
TMTC3	160418	broad.mit.edu	37	12	88560199	88560199	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:88560199C>T	uc001tau.2	+	7	1110	c.890C>T	c.(889-891)CCT>CTT	p.P297L	TMTC3_uc009zsm.2_RNA	NM_181783	NP_861448	Q6ZXV5	TMTC3_HUMAN	transmembrane and tetratricopeptide repeat	297						integral to membrane	binding			skin(1)	1						TTATTAAATCCTTCAGAGCTC	0.393													7	51					0	0	0.00198382	0	0
C12orf63	374467	broad.mit.edu	37	12	97045486	97045486	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:97045486C>T	uc001tet.1	+	3	346	c.268C>T	c.(268-270)CCT>TCT	p.P90S		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	90										skin(6)|ovary(1)	7						TAAAACATTTCCTATTAGCCA	0.383													7	33					0	0	0.00307968	0	0
SPIC	121599	broad.mit.edu	37	12	101880267	101880267	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:101880267G>A	uc001tid.2	+	6	624	c.465G>A	c.(463-465)GGG>GGA	p.G155G	SPIC_uc009zua.2_Silent_p.G30G|SPIC_uc010svp.1_Silent_p.G154G	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	155	ETS.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						AGCTTTGGGGGAAAAGAAAAG	0.423													4	33					0	0	0.00024832	0	0
POLR3B	55703	broad.mit.edu	37	12	106772118	106772118	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:106772118C>T	uc001tlp.2	+	8	792	c.570C>T	c.(568-570)ATC>ATT	p.I190I	POLR3B_uc001tlq.2_Silent_p.I132I	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	190					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						ACAGGATCATCGTGGAGGCTG	0.413													6	56					0	0	0.000274275	0	0
C12orf51	283450	broad.mit.edu	37	12	112647993	112647993	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:112647993G>A	uc009zwc.2	-	43	6445	c.6427C>T	c.(6427-6429)CGC>TGC	p.R2143C	C12orf51_uc001ttr.1_Missense_Mutation_p.R318C	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GCAGCATTGCGGTGGGCCTGC	0.542													6	77					0	0	0.00198382	0	0
PTPN11	5781	broad.mit.edu	37	12	112891006	112891006	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:112891006C>T	uc001ttx.2	+	4	720	c.340C>T	c.(340-342)CAT>TAT	p.H114Y	PTPN11_uc001ttw.1_Missense_Mutation_p.H114Y	NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	114	SH2 2.				axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding			haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						TAGGTGGTTTCATGGACATCT	0.358			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				8	69					0	0	0.000274275	0	0
RBM19	9904	broad.mit.edu	37	12	114386828	114386828	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:114386828G>A	uc009zwi.2	-	10	1230	c.1086C>T	c.(1084-1086)ATC>ATT	p.I362I	RBM19_uc001tvn.3_Silent_p.I362I|RBM19_uc001tvm.2_Silent_p.I362I	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	362	RRM 2.				multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					TGAACACCTCGATGTAGCGCC	0.567													6	42					0	0	0.00198382	0	0
CCDC60	160777	broad.mit.edu	37	12	119773030	119773030	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:119773030G>A	uc001txe.2	+	1	514	c.49G>A	c.(49-51)GGG>AGG	p.G17R		NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	17										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CCCCAACTCGGGGGCTGTCCG	0.473													5	38					0	0	0.00116845	0	0
GCN1L1	10985	broad.mit.edu	37	12	120582578	120582578	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:120582578G>A	uc001txo.2	-	41	5230	c.5217C>T	c.(5215-5217)ATC>ATT	p.I1739I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1739					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGTAGCCACGATTTCTGGCA	0.507													10	80					0	0	0.000978159	0	0
KNTC1	9735	broad.mit.edu	37	12	123028814	123028814	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr12:123028814G>A	uc001ucv.2	+	8	830	c.667G>A	c.(667-669)GGG>AGG	p.G223R	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	223					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		TGTGATAATTGGGGTAATTGT	0.294													5	94					0	0	0.000602214	0	0
LOC284232	284232	broad.mit.edu	37	13	19409771	19409771	+	RNA	SNP	T	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:19409771T>G	uc010tcj.1	-	1		c.36339A>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TCCAGTGGATTTACTGACTTT	0.388													4	59					0	0	0.00024832	0	0
PABPC3	5042	broad.mit.edu	37	13	25670866	25670866	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:25670866A>G	uc001upy.2	+	1	591	c.530A>G	c.(529-531)AAA>AGA	p.K177R		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	177					mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		AAGTCTCGTAAAGAACGAGAA	0.408													5	51					0	0	0.000602214	0	0
KL	9365	broad.mit.edu	37	13	33635435	33635435	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:33635435C>A	uc001uus.2	+	4	2227	c.2219C>A	c.(2218-2220)CCT>CAT	p.P740H	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	740	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CCTGCCTGCCCTTTCTCCCAA	0.488													6	50					0.00198382	0.00445074	0.00198382	1	0
ZC3H13	23091	broad.mit.edu	37	13	46549517	46549517	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:46549517C>A	uc010tfw.1	-	11	2375	c.2369G>T	c.(2368-2370)TGG>TTG	p.W790L	ZC3H13_uc001vas.1_Missense_Mutation_p.W790L|ZC3H13_uc001vat.1_Missense_Mutation_p.W790L	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	790	Arg/Glu-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		TTTGTCTTCCCAATCCCTTTG	0.274													6	80					0.00198382	0.00445074	0.00198382	1	0
HTR2A	3356	broad.mit.edu	37	13	47469888	47469888	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:47469888G>A	uc001vbq.2	-	1	288	c.154C>T	c.(154-156)CGA>TGA	p.R52*	HTR2A_uc001vbr.2_Intron|HTR2A_uc010acr.2_Nonsense_Mutation_p.R52*	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	52	Extracellular (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	AGGTTGGTTCGATTTTCAGAG	0.443													6	49					0	0	0.00198382	0	0
SETDB2	83852	broad.mit.edu	37	13	50062649	50062649	+	Silent	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:50062649T>C	uc001vcz.2	+	13	2742	c.1836T>C	c.(1834-1836)GAT>GAC	p.D612D	SETDB2_uc010adh.2_3'UTR|SETDB2_uc001vda.2_Silent_p.D600D	NM_031915	NP_114121	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2 isoform a	612	SET.				cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		TATTTTGTGATGAAGAGTTGC	0.358													4	41					0	0	0.00024832	0	0
ATP7B	540	broad.mit.edu	37	13	52544669	52544669	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:52544669G>A	uc001vfw.2	-	3	1659	c.1502C>T	c.(1501-1503)TCC>TTC	p.S501F	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Missense_Mutation_p.S501F|ATP7B_uc001vfy.2_Missense_Mutation_p.S390F|ATP7B_uc010tgt.1_Missense_Mutation_p.S501F|ATP7B_uc010tgu.1_Missense_Mutation_p.S501F|ATP7B_uc010tgv.1_Missense_Mutation_p.S501F|ATP7B_uc010tgw.1_Missense_Mutation_p.S469F	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	501	HMA 5.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		AGACACACAGGATGCACAGGT	0.488									Wilson_disease				8	94					0	0	0.000274275	0	0
GPC5	2262	broad.mit.edu	37	13	92345629	92345629	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:92345629C>T	uc010tif.1	+	3	880	c.514C>T	c.(514-516)CCT>TCT	p.P172S		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	172						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				CAGTCTTTTTCCTCTGGTCTA	0.458													5	43					0	0	0.000602214	0	0
DOCK9	23348	broad.mit.edu	37	13	99519729	99519729	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:99519729G>A	uc001vnt.2	-	30	3294	c.3239C>T	c.(3238-3240)CCG>CTG	p.P1080L	DOCK9_uc001vnw.2_Missense_Mutation_p.P1079L|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.P1080L|DOCK9_uc010tis.1_Missense_Mutation_p.P1079L|DOCK9_uc010tit.1_Missense_Mutation_p.P1080L|DOCK9_uc010tiq.1_Missense_Mutation_p.P44L|DOCK9_uc010afu.1_Missense_Mutation_p.P926L	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1080					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TAAGTTCAACGGAATATAATG	0.363													6	136					0	0	0.000274275	0	0
NALCN	259232	broad.mit.edu	37	13	101797235	101797235	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:101797235C>T	uc001vox.1	-	16	2041	c.1852G>A	c.(1852-1854)GAA>AAA	p.E618K	NALCN_uc001voy.2_Missense_Mutation_p.E333K	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	618	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GCATTTGCTTCACTTTGCTTT	0.343													8	122					0	0	0.000274275	0	0
ATP11A	23250	broad.mit.edu	37	13	113526059	113526059	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:113526059A>C	uc001vsi.3	+	26	3090	c.3002A>C	c.(3001-3003)AAC>ACC	p.N1001T	ATP11A_uc001vsj.3_Missense_Mutation_p.N1001T|ATP11A_uc010ago.2_RNA	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	1001	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				ATATTTGGAAACTGGACGTTT	0.413													4	94					0	0	0.000602214	0	0
PROZ	8858	broad.mit.edu	37	13	113814420	113814420	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr13:113814420G>A	uc001vta.1	+	2	170	c.163G>A	c.(163-165)GAA>AAA	p.E55K	PROZ_uc010agr.1_Missense_Mutation_p.E77K	NM_003891	NP_003882	P22891	PROZ_HUMAN	protein Z, vitamin K-dependent plasma	55	Gla.				blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.216)	all cancers(43;0.104)		Menadione(DB00170)	GGGAAACTTGGAAAAAGAATG	0.463													6	64					0	0	0.00116845	0	0
OR4M1	441670	broad.mit.edu	37	14	20248628	20248628	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:20248628C>T	uc010tku.1	+	1	147	c.147C>T	c.(145-147)ATC>ATT	p.I49I		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTGCACCATCAGGCTAGACC	0.428													9	258					0	0	0.000978159	0	0
OR4M1	441670	broad.mit.edu	37	14	20248731	20248731	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:20248731G>A	uc010tku.1	+	1	250	c.250G>A	c.(250-252)GAC>AAC	p.D84N		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AATGCTCATAGACTTCTTTGT	0.443													8	255					0	0	0.00307968	0	0
OR4L1	122742	broad.mit.edu	37	14	20528284	20528284	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:20528284C>T	uc001vwn.1	+	1	81	c.81C>T	c.(79-81)TTC>TTT	p.F27F		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AAATTTTCTTCTTTGTGACAT	0.383													5	55					0	0	0.000602214	0	0
TEP1	7011	broad.mit.edu	37	14	20876479	20876479	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:20876479G>A	uc001vxe.2	-	2	160	c.120C>T	c.(118-120)ACC>ACT	p.T40T	TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Silent_p.T40T	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	40	TEP1 N-terminal 2.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TATCTGAGTGGGTAGATACAT	0.517													5	60					0	0	0.000602214	0	0
RNASE10	338879	broad.mit.edu	37	14	20978697	20978697	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:20978697C>T	uc010tlj.1	+	1	67	c.67C>T	c.(67-69)CTG>TTG	p.L23L	RNASE10_uc001vxp.2_Silent_p.L51L	NM_001012975	NP_001012993	Q5GAN6	RNS10_HUMAN	ribonuclease, RNase A family, 10 (non-active)	23						extracellular region	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00123)		Epithelial(56;1.81e-07)|all cancers(55;1.86e-06)	GBM - Glioblastoma multiforme(265;0.022)|READ - Rectum adenocarcinoma(17;0.191)		ggggatgggcctggggttggg	0.368													5	69					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	14	22337489	22337489	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:22337489C>T	uc010tmf.1	+	2	362	c.283C>T	c.(283-285)CTG>TTG	p.L95L	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Silent_p.L94L|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		ACATTTCTCCCTGCACATCAC	0.463													7	41					0	0	0.00198382	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885228	24885228	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:24885228C>T	uc001wpf.3	+	9	4591	c.4273C>T	c.(4273-4275)CCG>TCG	p.P1425S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1425	Helical; (Potential).				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CTCATCCCTTCCGTTTATCTA	0.607													4	37					0	0	0.00024832	0	0
NIN	51199	broad.mit.edu	37	14	51224444	51224444	+	Silent	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:51224444A>G	uc001wym.2	-	18	3495	c.3304T>C	c.(3304-3306)TTA>CTA	p.L1102L	NIN_uc001wyi.2_Silent_p.L1102L|NIN_uc001wyj.2_Intron|NIN_uc001wyk.2_Intron|NIN_uc010tqp.1_Silent_p.L1108L|NIN_uc001wyo.2_Silent_p.L1102L	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	1102					centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					GACATTACTAACCCTGGCTCT	0.418			T	PDGFRB	MPD								8	113					0	0	0.00307968	0	0
NID2	22795	broad.mit.edu	37	14	52520773	52520773	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:52520773G>A	uc001wzo.2	-	4	1268	c.1034C>T	c.(1033-1035)TCC>TTC	p.S345F	NID2_uc010tqs.1_Missense_Mutation_p.S345F|NID2_uc010tqt.1_Missense_Mutation_p.S345F|NID2_uc001wzp.2_Missense_Mutation_p.S345F	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	345						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					GGATTGGAAGGAAACATCAAT	0.478													4	55					0	0	0.000602214	0	0
GPR137C	283554	broad.mit.edu	37	14	53066920	53066920	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:53066920C>A	uc001wzu.3	+	3	578	c.578C>A	c.(577-579)CCA>CAA	p.P193Q	GPR137C_uc001wzt.3_Missense_Mutation_p.P193Q	NM_001099652	NP_001093122	Q8N3F9	G137C_HUMAN	G protein-coupled receptor 137C	193	Extracellular (Potential).					integral to membrane					0	Breast(41;0.0716)					GGAGATGTCCCAGAAAATCAG	0.373													6	75					0.00307968	0.00688792	0.00307968	1	0
DDHD1	80821	broad.mit.edu	37	14	53529882	53529882	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:53529882G>A	uc001xai.2	-	7	1775	c.1545C>T	c.(1543-1545)TCC>TCT	p.S515S	DDHD1_uc001xaj.2_Silent_p.S522S|DDHD1_uc001xah.2_Silent_p.S515S|DDHD1_uc001xag.2_Silent_p.S97S|DDHD1_uc001xak.1_5'Flank	NM_001160148	NP_001153620	Q8NEL9	DDHD1_HUMAN	DDHD domain containing 1 isoform c	515					lipid catabolic process	cytoplasm	hydrolase activity|metal ion binding			ovary(2)	2	Breast(41;0.037)					AACAGAAAAGGGAATACAATC	0.353													5	49					0	0	0.00116845	0	0
C14orf39	317761	broad.mit.edu	37	14	60925443	60925443	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:60925443C>T	uc001xez.3	-	14	1242	c.1132G>A	c.(1132-1134)GAT>AAT	p.D378N	C14orf39_uc010apo.2_Missense_Mutation_p.D89N	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	378										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		GTCCCTTTATCTCCATACTCA	0.249													5	49					0	0	0.00198382	0	0
SYNE2	23224	broad.mit.edu	37	14	64496705	64496705	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:64496705C>T	uc001xgm.2	+	44	7037	c.6807C>T	c.(6805-6807)TCC>TCT	p.S2269S	SYNE2_uc001xgl.2_Silent_p.S2269S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	2269	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ACAATTTCTCCAAGGAATTTG	0.408													4	18					0	0	0.00024832	0	0
SYNE2	23224	broad.mit.edu	37	14	64655272	64655272	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:64655272C>T	uc001xgm.2	+	98	17947	c.17717C>T	c.(17716-17718)GCC>GTC	p.A5906V	SYNE2_uc001xgl.2_Missense_Mutation_p.A5906V|SYNE2_uc010apy.2_Missense_Mutation_p.A2291V|SYNE2_uc001xgn.2_Missense_Mutation_p.A868V|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_5'UTR|SYNE2_uc001xgq.2_Missense_Mutation_p.A271V	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5906	Spectrin 4.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTGCAGGTGGCCATACGTAAA	0.398													4	41					0	0	0.00198382	0	0
SLC8A3	6547	broad.mit.edu	37	14	70635034	70635034	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:70635034C>T	uc001xly.2	-	2	860	c.106G>A	c.(106-108)GGG>AGG	p.G36R	SLC8A3_uc001xlw.2_Missense_Mutation_p.G36R|SLC8A3_uc001xlx.2_Missense_Mutation_p.G36R|SLC8A3_uc001xlz.2_Missense_Mutation_p.G36R|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	36	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GGCACGTCCCCTGAGCCACCA	0.562													3	16					0	0	6.4e-05	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72055091	72055091	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:72055091C>T	uc001xms.2	+	2	850	c.502C>T	c.(502-504)CGC>TGC	p.R168C	SIPA1L1_uc001xmt.2_Missense_Mutation_p.R168C|SIPA1L1_uc001xmu.2_Missense_Mutation_p.R168C|SIPA1L1_uc001xmv.2_Missense_Mutation_p.R168C	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	168					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		AAAAGCTCTTCGCAGAATACG	0.468													5	29					0	0	0.000602214	0	0
PSEN1	5663	broad.mit.edu	37	14	73640349	73640349	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:73640349C>T	uc001xnr.2	+	5	698	c.414C>T	c.(412-414)ATC>ATT	p.I138I	PSEN1_uc001xnv.2_Silent_p.I134I|PSEN1_uc010ark.2_Silent_p.I134I|PSEN1_uc001xnt.1_RNA|PSEN1_uc001xnu.2_RNA|PSEN1_uc001xnq.3_Silent_p.I138I	NM_000021	NP_000012	P49768	PSN1_HUMAN	presenilin 1 isoform I-467	138	Helical; (Potential).				amyloid precursor protein catabolic process|anti-apoptosis|beta-amyloid metabolic process|cell-cell adhesion|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|smooth endoplasmic reticulum calcium ion homeostasis	apical plasma membrane|axon|cell cortex|cell surface|centrosome|ciliary rootlet|dendritic shaft|endoplasmic reticulum membrane|gamma-secretase complex|Golgi membrane|growth cone|integral to plasma membrane|kinetochore|lysosomal membrane|membrane raft|mitochondrial inner membrane|neuromuscular junction|neuronal cell body|nuclear outer membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum|smooth endoplasmic reticulum|Z disc	aspartic-type endopeptidase activity|beta-catenin binding|cadherin binding|calcium channel activity|PDZ domain binding			breast(1)|kidney(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.075)		ATGCTGCCATCATGATCAGTG	0.443													7	58					0	0	0.00198382	0	0
BTBD7	55727	broad.mit.edu	37	14	93709119	93709119	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:93709119G>A	uc001ybo.2	-	11	3225	c.2899C>T	c.(2899-2901)CCT>TCT	p.P967S	BTBD7_uc010aur.2_Missense_Mutation_p.P492S|BTBD7_uc010two.1_Missense_Mutation_p.P787S|BTBD7_uc001ybp.2_Missense_Mutation_p.P616S	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	967										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		CCTTGCGAAGGGGAAGGGGTG	0.493													6	65					0	0	0.00198382	0	0
BCL11B	64919	broad.mit.edu	37	14	99724040	99724040	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:99724040G>A	uc001yga.2	-	2	462	c.195C>T	c.(193-195)TTC>TTT	p.F65F	BCL11B_uc001ygb.2_Silent_p.F65F	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	65						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		CCCCCAAGGGGAAGTTCATTT	0.592			T	TLX3	T-ALL								6	40					0	0	0.00307968	0	0
PPP2R5C	5527	broad.mit.edu	37	14	102368098	102368098	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:102368098C>T	uc001yko.2	+	9	1035	c.895C>T	c.(895-897)CCA>TCA	p.P299S	PPP2R5C_uc010txr.1_Missense_Mutation_p.P330S|PPP2R5C_uc001ykk.2_Missense_Mutation_p.P354S|PPP2R5C_uc010txt.1_Missense_Mutation_p.P289S|PPP2R5C_uc001ykn.2_Missense_Mutation_p.P299S|PPP2R5C_uc001ykp.2_Missense_Mutation_p.P299S|PPP2R5C_uc001ykq.2_Missense_Mutation_p.P197S	NM_002719	NP_002710	Q13362	2A5G_HUMAN	gamma isoform of regulatory subunit B56, protein	299					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of cell proliferation|proteasomal ubiquitin-dependent protein catabolic process|signal transduction	chromosome, centromeric region|nucleus|protein phosphatase type 2A complex	protein binding|protein binding|protein phosphatase type 2A regulator activity|protein phosphatase type 2A regulator activity			ovary(1)|breast(1)	2						GACTCACAGTCCAAAAGAAGT	0.448													8	51					0	0	0.000274275	0	0
INF2	64423	broad.mit.edu	37	14	105181624	105181624	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:105181624T>C	uc001ypb.2	+	22	3841	c.3698T>C	c.(3697-3699)GTT>GCT	p.V1233A	INF2_uc010tyi.1_Missense_Mutation_p.V1233A|INF2_uc001ypc.2_Intron|INF2_uc010awz.1_RNA	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	1233					actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		GAAGCAGAGGTTCCCCCTGAT	0.552													7	79					0	0	0.00307968	0	0
ADAM6	8755	broad.mit.edu	37	14	106573654	106573654	+	RNA	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:106573654G>A	uc010tyt.1	-	1359		c.28951C>T								Parts of antibodies, mostly variable regions.												0						TAGCAACAAGGAAAACCCAGC	0.468													5	72					0	0	0.00116845	0	0
ADAM6	8755	broad.mit.edu	37	14	106586575	106586575	+	RNA	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr14:106586575G>A	uc010tyt.1	-	1284		c.27743C>T			uc001ysv.2_Intron					Parts of antibodies, mostly variable regions.												0						ACCCAGCTCAGCCCCAACTCC	0.488													5	53					0	0	0.00198382	0	0
OTUD7A	161725	broad.mit.edu	37	15	31822961	31822961	+	Missense_Mutation	SNP	G	A	A	rs146170863		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:31822961G>A	uc001zfq.2	-	4	694	c.601C>T	c.(601-603)CCT>TCT	p.P201S	OTUD7A_uc001zfr.2_Missense_Mutation_p.P201S	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	201	OTU.|Catalytic (By similarity).|TRAF-binding (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding	p.P201S(1)		pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		GTGGCCAGAGGAAGAAGCCGT	0.557													5	38					0	0	0.00307968	0	0
RYR3	6263	broad.mit.edu	37	15	33916099	33916099	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:33916099G>A	uc001zhi.2	+	20	2519	c.2449G>A	c.(2449-2451)GAG>AAG	p.E817K	RYR3_uc010bar.2_Missense_Mutation_p.E817K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	817	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ACTTCCAAAAGAGAAGATGAG	0.468													5	59					0	0	0.00116845	0	0
RYR3	6263	broad.mit.edu	37	15	33928596	33928596	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:33928596G>A	uc001zhi.2	+	27	3471	c.3401G>A	c.(3400-3402)GGA>GAA	p.G1134E	RYR3_uc010bar.2_Missense_Mutation_p.G1134E	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1134	B30.2/SPRY 2.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGGCATCAAGGAAGTGGGTAT	0.498													11	101					0	0	0.000978159	0	0
C15orf55	256646	broad.mit.edu	37	15	34649660	34649660	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:34649660G>A	uc001zif.2	+	7	3522	c.3367G>A	c.(3367-3369)GGC>AGC	p.G1123S	C15orf55_uc010ucc.1_Missense_Mutation_p.G1151S|C15orf55_uc010ucd.1_Missense_Mutation_p.G1141S	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	1123						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		TTTTGTCACGGGCAGAAGGAA	0.582			T	BRD3|BRD4	lethal midline carcinoma								4	48					0	0	0.00024832	0	0
TGM7	116179	broad.mit.edu	37	15	43579738	43579738	+	Splice_Site	SNP	C	T	T	rs151213644	byFrequency	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:43579738C>T	uc001zrf.1	-	5	692	c.687_splice	c.e5+1	p.M229_splice		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7						peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	TCCATCCTTACCATGGCACTC	0.552													4	61					0	0	0.000602214	0	0
MAP1A	4130	broad.mit.edu	37	15	43814443	43814443	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:43814443C>T	uc001zrt.2	+	4	1239	c.772C>T	c.(772-774)CCC>TCC	p.P258S		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	258						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	ACCAGCCAATCCCACTGAGAA	0.532													9	48					0	0	0.000442599	0	0
DUOX1	53905	broad.mit.edu	37	15	45431689	45431689	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:45431689C>T	uc001zus.1	+	13	1627	c.1281C>T	c.(1279-1281)GGC>GGT	p.G427G	DUOX1_uc001zut.1_Silent_p.G427G|DUOX1_uc010bee.1_Intron	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	427	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		TGCAGCGGGGCCGGGATCTGG	0.622													4	34					0	0	0.00024832	0	0
COPS2	9318	broad.mit.edu	37	15	49426226	49426226	+	Nonsense_Mutation	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:49426226A>C	uc001zxf.2	-	8	874	c.795T>G	c.(793-795)TAT>TAG	p.Y265*	COPS2_uc001zxh.2_Nonsense_Mutation_p.Y272*|COPS2_uc010ufa.1_Nonsense_Mutation_p.Y201*	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	265	PCI.				cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		CAGATTCATCATAATTCTTGA	0.373													4	40					0	0	0.00024832	0	0
ATP8B4	79895	broad.mit.edu	37	15	50212512	50212512	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:50212512C>T	uc001zxu.2	-	18	1996	c.1854G>A	c.(1852-1854)GCG>GCA	p.A618A	ATP8B4_uc010ber.2_Silent_p.A491A|ATP8B4_uc010ufd.1_Silent_p.A428A|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	618	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TGGCAGCATTCGCATCTTCAA	0.448													9	66					0	0	0.000442599	0	0
HDC	3067	broad.mit.edu	37	15	50555448	50555448	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:50555448C>T	uc001zxz.2	-	2	294	c.188G>A	c.(187-189)CGA>CAA	p.R63Q	HDC_uc010uff.1_Missense_Mutation_p.R63Q|HDC_uc010bet.1_Missense_Mutation_p.R63Q|HDC_uc010beu.1_Missense_Mutation_p.R63Q	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	63					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	CATGATGATTCGTTCAATGTC	0.597													14	74					0	0	0.00244969	0	0
DMXL2	23312	broad.mit.edu	37	15	51741329	51741329	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:51741329G>A	uc002abf.2	-	43	9188	c.8963C>T	c.(8962-8964)TCC>TTC	p.S2988F	DMXL2_uc002abd.2_Missense_Mutation_p.S1080F|DMXL2_uc010ufy.1_Missense_Mutation_p.S2989F|DMXL2_uc010bfa.2_Missense_Mutation_p.S2352F|DMXL2_uc002abc.2_RNA	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2988						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TCGAAATATGGACTGCTTAGC	0.428													4	27					0	0	0.00024832	0	0
MYO5C	55930	broad.mit.edu	37	15	52571829	52571829	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:52571829G>A	uc010bff.2	-	3	318	c.181C>T	c.(181-183)CGG>TGG	p.R61W	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_Missense_Mutation_p.R24W|MIR1266_hsa-mir-1266|MI0006403_5'Flank	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	61	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TCAGGATTCCGAAGTGGAGGC	0.463													5	42					0	0	0.00116845	0	0
CGNL1	84952	broad.mit.edu	37	15	57743753	57743753	+	Missense_Mutation	SNP	C	T	T	rs111516593		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:57743753C>T	uc002aeg.2	+	5	1935	c.1859C>T	c.(1858-1860)ACC>ATC	p.T620I	CGNL1_uc010bfw.2_Missense_Mutation_p.T620I	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	620	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGCAAGTTGACCATAGAagtg	0.234													9	56					0	0	0.000274275	0	0
GCNT3	9245	broad.mit.edu	37	15	59910665	59910665	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:59910665G>A	uc002age.2	+	3	677	c.228G>A	c.(226-228)GGG>GGA	p.G76G	GCNT3_uc002agd.2_Silent_p.G76G	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	76	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						TCACCCGAGGGGACCAAGAGG	0.488													9	74					0	0	0.000274275	0	0
VPS13C	54832	broad.mit.edu	37	15	62239485	62239485	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:62239485C>T	uc002agz.2	-	43	4857	c.4783G>A	c.(4783-4785)GAT>AAT	p.D1595N	VPS13C_uc002aha.2_Missense_Mutation_p.D1552N|VPS13C_uc002ahb.1_Missense_Mutation_p.D1595N|VPS13C_uc002ahc.1_Missense_Mutation_p.D1552N	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1595					protein localization					ovary(2)	2						TCAAACACATCCTTTTGGGAA	0.313													7	57					0	0	0.00198382	0	0
SMAD3	4088	broad.mit.edu	37	15	67482832	67482832	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:67482832C>T	uc002aqj.2	+	9	1534	c.1236C>T	c.(1234-1236)ACC>ACT	p.T412T	SMAD3_uc010ujr.1_Silent_p.T307T|SMAD3_uc010ujs.1_Silent_p.T368T|SMAD3_uc010ujt.1_Silent_p.T217T	NM_005902	NP_005893	P84022	SMAD3_HUMAN	mothers against decapentaplegic homolog 3	412	MH2.				activation of caspase activity|cell cycle arrest|cell-cell junction organization|evasion of host defenses by virus|immune response|induction of apoptosis|negative regulation of cell growth|negative regulation of mitotic cell cycle|negative regulation of protein catabolic process|negative regulation of protein phosphorylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|protein stabilization|regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|transport|wound healing	cytosol|nuclear inner membrane|receptor complex	beta-catenin binding|co-SMAD binding|metal ion binding|protein homodimerization activity|protein kinase binding|R-SMAD binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor binding|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|ubiquitin protein ligase binding			large_intestine(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5				Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(7;0.125)		AGGTCCTCACCCAGATGGGCT	0.552													5	10					0	0	0.000602214	0	0
MYO9A	4649	broad.mit.edu	37	15	72190477	72190477	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:72190477G>A	uc002atl.3	-	25	4840	c.4367C>T	c.(4366-4368)ACT>ATT	p.T1456I	MYO9A_uc010biq.2_Missense_Mutation_p.T1076I|MYO9A_uc002atn.1_Missense_Mutation_p.T1437I|MYO9A_uc002atk.2_Missense_Mutation_p.T180I|MYO9A_uc002atm.1_Missense_Mutation_p.T180I	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1456	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						GATATCCAAAGTAAGAGCTTC	0.403													8	30					0	0	0.00307968	0	0
SNX33	257364	broad.mit.edu	37	15	75942337	75942337	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:75942337C>T	uc002bau.2	+	1	990	c.894C>T	c.(892-894)TTC>TTT	p.F298F	IMP3_uc002bat.2_5'Flank|SNX33_uc002bav.2_5'UTR	NM_153271	NP_695003	Q8WV41	SNX33_HUMAN	sorting nexin 33	298	PX.				cell communication		phosphatidylinositol binding|protein binding			ovary(1)	1						CTGGCCGCTTCGAGGAGGACT	0.567													7	98					0	0	0.00198382	0	0
LOC645752	645752	broad.mit.edu	37	15	78211517	78211517	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:78211517C>G	uc010bky.2	-	11	1014	c.250G>C	c.(250-252)GTC>CTC	p.V84L		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TTGCTCAGGACACTCAAGGCC	0.557													5	96					0	0	0.000602214	0	0
LOC645752	645752	broad.mit.edu	37	15	78211548	78211548	+	Silent	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:78211548T>C	uc010bky.2	-	11	983	c.219A>G	c.(217-219)CAA>CAG	p.Q73Q		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						CCACCTGGGATTGGAGCTTTC	0.562													5	98					0	0	0.000602214	0	0
CHRNB4	1143	broad.mit.edu	37	15	78921816	78921816	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:78921816G>A	uc002bed.1	-	5	943	c.831C>T	c.(829-831)TTC>TTT	p.F277F	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Silent_p.F95F	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	277	Helical; (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						TGAGCAGCAGGAAGAATGTCA	0.567													5	42					0	0	0.000602214	0	0
BLM	641	broad.mit.edu	37	15	91346770	91346770	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:91346770C>T	uc002bpr.2	+	18	3475	c.3378C>T	c.(3376-3378)ATC>ATT	p.I1126I	BLM_uc010uqh.1_Silent_p.I1126I|BLM_uc010uqi.1_Silent_p.I751I|BLM_uc010bnx.2_Intron|BLM_uc002bpt.2_Silent_p.I101I	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	1126					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			GTGCAAAAATCCAGTCAGGTA	0.348			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				14	187					0	0	0.00074312	0	0
MAN2A2	4122	broad.mit.edu	37	15	91448834	91448834	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:91448834C>T	uc010bnz.2	+	4	531	c.416C>T	c.(415-417)CCG>CTG	p.P139L	MAN2A2_uc010boa.2_Missense_Mutation_p.P181L|MAN2A2_uc002bqc.2_Missense_Mutation_p.P139L|MAN2A2_uc010uql.1_5'Flank|MAN2A2_uc010uqm.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	139	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GAGGAGCTGCCGTTTGACAAC	0.592													18	166					0	0	0.000958276	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92459244	92459244	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr15:92459244G>A	uc002bqx.2	+	2	403	c.202G>A	c.(202-204)GAG>AAG	p.E68K	SLCO3A1_uc002bqy.2_Missense_Mutation_p.E68K|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.E10K	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	68	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			GACCACCCTGGAGCGTAGGTT	0.607													5	28					0	0	0.00198382	0	0
WDR90	197335	broad.mit.edu	37	16	701674	701674	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:701674C>T	uc002cii.1	+	8	821	c.767C>T	c.(766-768)CCT>CTT	p.P256L	WDR90_uc002cig.1_Missense_Mutation_p.P256L|WDR90_uc002cih.1_Missense_Mutation_p.P256L|WDR90_uc002cij.1_RNA	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	256										ovary(1)	1		Hepatocellular(780;0.0218)				CAGCCTCTCCCTTGCCCGGTG	0.647													4	59					0	0	0.00024832	0	0
RPS2	6187	broad.mit.edu	37	16	2012881	2012881	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:2012881G>A	uc002cnn.2	-	4	593	c.405C>T	c.(403-405)GGC>GGT	p.G135G	RPS2_uc010bsa.1_RNA|RPS2_uc002cnl.2_Intron|RPS2_uc002cnm.2_Intron|RPS2_uc002cno.2_Silent_p.G135G|SNORA10_uc002cnp.1_5'Flank|SNHG9_uc002cnr.2_5'Flank|SNORA78_uc002cns.1_5'Flank	NM_002952	NP_002943	P15880	RS2_HUMAN	ribosomal protein S2	135	S5 DRBM.				endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleoplasm	fibroblast growth factor 1 binding|fibroblast growth factor 3 binding|RNA binding|structural constituent of ribosome				0						GACCGACGTGGCCATTGTAGT	0.617													6	20					0	0	0.00307968	0	0
MEFV	4210	broad.mit.edu	37	16	3304747	3304747	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:3304747G>A	uc002cun.1	-	2	361	c.321C>T	c.(319-321)TCC>TCT	p.S107S		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	107					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CCAGGGAGCTGGACGCTGCGG	0.592													4	39					0	0	0.000602214	0	0
SRL	6345	broad.mit.edu	37	16	4242713	4242713	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:4242713A>G	uc002cvz.3	-	6	876	c.863T>C	c.(862-864)GTT>GCT	p.V288A	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	747						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						GCTGACGTAAACCCTTGGGGG	0.542													4	52					0	0	0.00024832	0	0
USP7	7874	broad.mit.edu	37	16	8988992	8988992	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:8988992G>A	uc002czl.2	-	28	3134	c.2935C>T	c.(2935-2937)CAG>TAG	p.Q979*	USP7_uc010uyk.1_Nonsense_Mutation_p.Q880*|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Nonsense_Mutation_p.Q880*|USP7_uc002czk.2_Nonsense_Mutation_p.Q963*	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	979					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						ATGTCCACCTGGTCCAAAGGG	0.468													7	109					0	0	0.000274275	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857061	9857061	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:9857061G>A	uc002czo.3	-	13	4888	c.4340C>T	c.(4339-4341)TCC>TTC	p.S1447F	GRIN2A_uc010uym.1_Missense_Mutation_p.S1447F|GRIN2A_uc010uyn.1_3'UTR|GRIN2A_uc002czr.3_3'UTR	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1447	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ATTGCTGCAGGAATTTAAAAC	0.378													4	20					0	0	0.000602214	0	0
NOMO1	23420	broad.mit.edu	37	16	14972641	14972641	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:14972641C>T	uc002dcv.2	+	23	2773	c.2707C>T	c.(2707-2709)CGT>TGT	p.R903C		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	903	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						TGGCCTGTTTCGTTCCAACCT	0.532													7	60					0	0	0.000673444	0	0
SMG1	23049	broad.mit.edu	37	16	18846287	18846287	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:18846287G>A	uc002dfm.2	-	49	8620	c.8257C>T	c.(8257-8259)CTT>TTT	p.L2753F	SMG1_uc010bwb.2_Missense_Mutation_p.L2613F|SMG1_uc010bwa.2_Missense_Mutation_p.L1484F	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2753					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TTCTCATGAAGGAAAACTTTA	0.393													6	120					0	0	0.00198382	0	0
TMC5	79838	broad.mit.edu	37	16	19477414	19477414	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:19477414G>A	uc002dgc.3	+	9	2245	c.1496G>A	c.(1495-1497)AGG>AAG	p.R499K	TMC5_uc010vaq.1_Missense_Mutation_p.R499K|TMC5_uc002dgb.3_Missense_Mutation_p.R499K|TMC5_uc010var.1_Missense_Mutation_p.R499K|TMC5_uc002dgd.1_Missense_Mutation_p.R253K|TMC5_uc002dge.3_Missense_Mutation_p.R253K|TMC5_uc002dgf.3_Missense_Mutation_p.R182K|TMC5_uc002dgg.3_Missense_Mutation_p.R140K	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	499	Helical; (Potential).					integral to membrane				skin(1)	1						GGTTATTTTAGGGACACAGTG	0.448													5	17					0	0	0.000602214	0	0
GPR139	124274	broad.mit.edu	37	16	20043949	20043949	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:20043949C>T	uc002dgu.1	-	2	332	c.170G>A	c.(169-171)AGA>AAA	p.R57K	GPR139_uc010vaw.1_5'UTR	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	57	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CTTCTGTCTTCTTGCCACCAG	0.463													5	38					0	0	0.00116845	0	0
GP2	2813	broad.mit.edu	37	16	20331078	20331078	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:20331078G>A	uc002dgv.2	-	7	963	c.880C>T	c.(880-882)CAT>TAT	p.H294Y	GP2_uc002dgw.2_Missense_Mutation_p.H291Y|GP2_uc002dgx.2_Missense_Mutation_p.H147Y|GP2_uc002dgy.2_Missense_Mutation_p.H144Y	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	294	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						TAGATGGCATGGGTTTGATTT	0.393													6	73					0	0	0.00198382	0	0
ACSM2A	123876	broad.mit.edu	37	16	20494401	20494401	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:20494401C>T	uc010bwe.2	+	14	1770	c.1531C>T	c.(1531-1533)CTG>TTG	p.L511L	ACSM2A_uc002dhf.3_Silent_p.L511L|ACSM2A_uc002dhg.3_Silent_p.L511L|ACSM2A_uc010vay.1_Silent_p.L432L|ACSM2A_uc002dhh.3_Silent_p.L141L	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	511					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						ATTTGTGGTCCTGGCCTCGCA	0.493													7	56					0	0	0.00198382	0	0
ACSM2A	123876	broad.mit.edu	37	16	20494421	20494421	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:20494421C>T	uc010bwe.2	+	14	1790	c.1551C>T	c.(1549-1551)TCC>TCT	p.S517S	ACSM2A_uc002dhf.3_Silent_p.S517S|ACSM2A_uc002dhg.3_Silent_p.S517S|ACSM2A_uc010vay.1_Silent_p.S438S|ACSM2A_uc002dhh.3_Silent_p.S147S	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	517					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						AGTTCCTGTCCCATGACCCAG	0.517													4	55					0	0	0.000602214	0	0
ITGAD	3681	broad.mit.edu	37	16	31421742	31421742	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:31421742G>A	uc002ebv.1	+	11	1159	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	ITGAD_uc010cap.1_Silent_p.G370G	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	370	Extracellular (Potential).|FG-GAP 3.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						GGGCTGTGGGGAGCTTTAGCT	0.562													5	49					0	0	0.000602214	0	0
ITGAD	3681	broad.mit.edu	37	16	31425858	31425858	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:31425858C>T	uc002ebv.1	+	17	2132	c.2083C>T	c.(2083-2085)CCC>TCC	p.P695S	ITGAD_uc010cap.1_Missense_Mutation_p.P696S	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	695	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						AACCAAGAACCCCACTTTGAC	0.522													13	144					0	0	0.00316338	0	0
VPS35	55737	broad.mit.edu	37	16	46695716	46695716	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:46695716G>A	uc002eef.3	-	16	2224	c.2125C>T	c.(2125-2127)CAG>TAG	p.Q709*	VPS35_uc002eed.2_3'UTR|VPS35_uc002eee.2_Nonsense_Mutation_p.Q670*	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	709					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				TCCATGCACTGATTTGCTATT	0.373													11	78					0	0	0.00185496	0	0
SALL1	6299	broad.mit.edu	37	16	51173664	51173664	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:51173664G>A	uc010vgs.1	-	2	2500	c.2469C>T	c.(2467-2469)AAC>AAT	p.N823N	SALL1_uc010vgr.1_Silent_p.N726N|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	823					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CATCAGAGAAGTTGTCTAGGT	0.507													9	104					0	0	0.000673444	0	0
CES8	283848	broad.mit.edu	37	16	67029622	67029622	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:67029622C>T	uc002eqv.2	+	2	193	c.150C>T	c.(148-150)GTC>GTT	p.V50V	CES8_uc010vix.1_Silent_p.V50V|CES8_uc002eqw.2_Silent_p.V10V	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	50						extracellular region	carboxylesterase activity				0						CCATCCAAGTCTTTTTAGGAG	0.532													5	41					0	0	0.000602214	0	0
HP	3240	broad.mit.edu	37	16	72094674	72094674	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:72094674G>A	uc002fbr.3	+	7	1150	c.1106G>A	c.(1105-1107)TGG>TAG	p.W369*	TXNL4B_uc010cgl.2_Intron|HP_uc010cgm.2_Nonsense_Mutation_p.W310*|HP_uc002fbt.3_Nonsense_Mutation_p.W310*|HP_uc002fbu.1_Nonsense_Mutation_p.W107*|HP_uc002fbv.3_Nonsense_Mutation_p.W280*|HP_uc002fbw.3_Nonsense_Mutation_p.W191*|HP_uc002fbx.3_Nonsense_Mutation_p.W191*|HPR_uc002fby.2_5'Flank	NM_005143	NP_005134	P00738	HPT_HUMAN	haptoglobin isoform 1 preproprotein	369	Peptidase S1.				cellular iron ion homeostasis|defense response|negative regulation of hydrogen peroxide catabolic process|negative regulation of oxidoreductase activity|positive regulation of cell death|proteolysis|response to hydrogen peroxide	extracellular region|haptoglobin-hemoglobin complex	hemoglobin binding|serine-type endopeptidase activity				0		Renal(780;9.67e-05)|Ovarian(137;0.00327)|Hepatocellular(780;0.114)		BRCA - Breast invasive adenocarcinoma(221;0.00015)|Kidney(780;0.000529)		GAGGACACCTGGTATGCGACT	0.527													8	50					0	0	0.000442599	0	0
ZFHX3	463	broad.mit.edu	37	16	72829865	72829865	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:72829865C>T	uc002fck.2	-	9	7389	c.6716G>A	c.(6715-6717)TGG>TAG	p.W2239*	ZFHX3_uc002fcl.2_Nonsense_Mutation_p.W1325*	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2239					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CTTGCTTCCCCAGTACTCCTG	0.512													8	72					0	0	0.00307968	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76513374	76513374	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:76513374C>T	uc002feu.1	+	14	2206	c.1821C>T	c.(1819-1821)TAC>TAT	p.Y607Y	CNTNAP4_uc002fev.1_Silent_p.Y471Y|CNTNAP4_uc010chb.1_Silent_p.Y534Y|CNTNAP4_uc002fex.1_Silent_p.Y610Y|CNTNAP4_uc002few.2_Silent_p.Y582Y	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	607	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CAGGGTTTTACTATATAGATT	0.338													7	81					0	0	0.00307968	0	0
SDR42E1	93517	broad.mit.edu	37	16	82032905	82032905	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr16:82032905C>T	uc002fgu.2	-	3	1121	c.993G>A	c.(991-993)AAG>AAA	p.K331K		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	331					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						CTAGCTCTTTCTTGGCTTTCT	0.458													8	63					0	0	0.00307968	0	0
PRPF8	10594	broad.mit.edu	37	17	1577966	1577966	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:1577966G>A	uc002fte.2	-	21	3183	c.3069C>T	c.(3067-3069)AAC>AAT	p.N1023N		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1023						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		AATTCGTATGGTTCATGTCCT	0.438													9	95					0	0	0.000673444	0	0
OR3A2	4995	broad.mit.edu	37	17	3181423	3181423	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:3181423C>T	uc002fvg.2	-	1	846	c.807G>A	c.(805-807)ATG>ATA	p.M269I		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	269	Helical; Name=6; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						AACCCAGTCTCATGTAGTTGA	0.488													6	42					0	0	0.00198382	0	0
OR3A2	4995	broad.mit.edu	37	17	3181816	3181816	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:3181816G>A	uc002fvg.2	-	1	453	c.414C>T	c.(412-414)CCC>CCT	p.P138P		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TGTAGGTGAGGGGCTGGCAGA	0.607													4	29					0	0	0.00116845	0	0
P2RX1	5023	broad.mit.edu	37	17	3806913	3806913	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:3806913G>A	uc002fww.2	-	6	978	c.537C>T	c.(535-537)CTC>CTT	p.L179L		NM_002558	NP_002549	P51575	P2RX1_HUMAN	purinergic receptor P2X1	179	Extracellular (Potential).				platelet activation	integral to plasma membrane	calcium channel activity|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity			ovary(1)|skin(1)	2				LUAD - Lung adenocarcinoma(2;1.9e-05)|Lung(3;0.0173)		CGGCCTCTCGGAGAAGGGCAG	0.607													5	23					0	0	0.000602214	0	0
GGT6	124975	broad.mit.edu	37	17	4461413	4461413	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:4461413G>A	uc002fyd.3	-	4	1439	c.1379C>T	c.(1378-1380)CCC>CTC	p.P460L	MYBBP1A_uc002fxz.3_5'Flank|MYBBP1A_uc002fyb.3_5'Flank|GGT6_uc010vsb.1_Missense_Mutation_p.P312L|GGT6_uc002fyc.3_Missense_Mutation_p.P428L|GGT6_uc010vsc.1_Missense_Mutation_p.P466L	NM_001122890	NP_001116362	Q6P531	GGT6_HUMAN	gamma-glutamyltransferase 6 isoform a	460	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			skin(1)	1						ACAAGTGCTGGGATGCTCTGT	0.642													4	27					0	0	0.00024832	0	0
ALOX15B	247	broad.mit.edu	37	17	7950292	7950292	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:7950292C>T	uc002gju.2	+	10	1471	c.1355C>T	c.(1354-1356)TCT>TTT	p.S452F	ALOX15B_uc002gjv.2_Missense_Mutation_p.S423F|ALOX15B_uc002gjw.2_Missense_Mutation_p.S423F|ALOX15B_uc010vun.1_Missense_Mutation_p.S452F|ALOX15B_uc010cnp.2_Missense_Mutation_p.S258F	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	452	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						CTGAACTATTCTCTCCTGTGT	0.522													4	30					0	0	0.00024832	0	0
MYH13	8735	broad.mit.edu	37	17	10210258	10210258	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:10210258C>T	uc002gmk.1	-	36	5383	c.5293G>A	c.(5293-5295)GAT>AAT	p.D1765N		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1765	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GAGCTCACATCCGTGATGGCC	0.443													7	44					0	0	0.00198382	0	0
MYH4	4622	broad.mit.edu	37	17	10357991	10357991	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:10357991C>T	uc002gmn.2	-	22	2683	c.2572G>A	c.(2572-2574)GAA>AAA	p.E858K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	858	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCAAATTCTTCCTTCATGTTG	0.428													6	77					0	0	0.00198382	0	0
MYOCD	93649	broad.mit.edu	37	17	12656442	12656442	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:12656442C>T	uc002gnn.2	+	10	2136	c.1837C>T	c.(1837-1839)CAT>TAT	p.H613Y	MYOCD_uc002gno.2_Missense_Mutation_p.H613Y|MYOCD_uc002gnp.1_Missense_Mutation_p.H517Y|MYOCD_uc002gnq.2_Missense_Mutation_p.H332Y	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	613					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TGGAAATGCTCATTGTGTGGA	0.517													8	58					0	0	0.000442599	0	0
MYOCD	93649	broad.mit.edu	37	17	12656636	12656636	+	Silent	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:12656636C>A	uc002gnn.2	+	10	2330	c.2031C>A	c.(2029-2031)CCC>CCA	p.P677P	MYOCD_uc002gno.2_Silent_p.P677P|MYOCD_uc002gnp.1_Silent_p.P581P|MYOCD_uc002gnq.2_Silent_p.P396P	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	677					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TCTCCTCGCCCATCAGCAGCC	0.562													5	38					0.000602214	0.00135954	0.000602214	1	0
CCDC144NL	339184	broad.mit.edu	37	17	20799116	20799116	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:20799116T>C	uc002gyf.2	-	1	338	c.218A>G	c.(217-219)CAG>CGG	p.Q73R	uc002gyg.1_Intron|uc002gyh.1_Intron	NM_001004306	NP_001004306	Q6NUI1	C144L_HUMAN	coiled-coil domain containing 144 family,	73											0						GACATCGTGCTGGAGCTGGTC	0.652													6	52					0	0	0.00307968	0	0
ALDOC	230	broad.mit.edu	37	17	26900874	26900874	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:26900874G>A	uc002hbp.2	-	8	1023	c.878C>T	c.(877-879)CCC>CTC	p.P293L	PIGS_uc002hbn.2_5'Flank|PIGS_uc002hbo.2_5'Flank|PIGS_uc010wap.1_5'Flank|ALDOC_uc010cro.2_Missense_Mutation_p.P265L	NM_005165	NP_005156	P09972	ALDOC_HUMAN	fructose-bisphosphate aldolase C	293					fructose 1,6-bisphosphate metabolic process|gluconeogenesis|glycolysis	cytosol	cytoskeletal protein binding|fructose-bisphosphate aldolase activity			ovary(1)	1	Lung NSC(42;0.00431)					CCAGGGTCGGGGAAGGGGGCA	0.602													6	66					0	0	0.00116845	0	0
KIAA0100	9703	broad.mit.edu	37	17	26943653	26943653	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:26943653G>A	uc002hbu.2	-	35	6239	c.6140C>T	c.(6139-6141)TCC>TTC	p.S2047F	SGK494_uc010waq.1_5'Flank|SGK494_uc010war.1_5'Flank|SGK494_uc002hbr.1_5'Flank|uc002hbs.1_RNA|KIAA0100_uc002hbt.2_Missense_Mutation_p.S376F	NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	2047						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					CACCAGTTTGGACTTATCCTC	0.478													7	57					0	0	0.00307968	0	0
NEK8	284086	broad.mit.edu	37	17	27061926	27061926	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:27061926G>A	uc002hcp.2	+	3	390	c.390G>A	c.(388-390)AAG>AAA	p.K130K		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	130	Protein kinase.					cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					GAGACCTCAAGACCCAGAACA	0.547													7	56					0	0	0.000442599	0	0
HNF1B	6928	broad.mit.edu	37	17	36064953	36064953	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:36064953G>A	uc002hok.3	-	6	1531	c.1310C>T	c.(1309-1311)CCC>CTC	p.P437L	HNF1B_uc010wdi.1_Missense_Mutation_p.P411L	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	437					endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			TCCAGAGAGGGGTGTCATGAT	0.483									Hereditary_Prostate_Cancer				20	175					0	0	0.00395357	0	0
HNF1B	6928	broad.mit.edu	37	17	36091761	36091761	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:36091761C>T	uc002hok.3	-	4	1091	c.870G>A	c.(868-870)TTG>TTA	p.L290L	HNF1B_uc010wdi.1_Silent_p.L264L|HNF1B_uc010cve.1_Silent_p.L98L	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	290	Homeobox; HNF1-type.				endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			CCTCAGTGACCAAGTTGGAGC	0.602									Hereditary_Prostate_Cancer				13	205					0	0	0.00136819	0	0
MED1	5469	broad.mit.edu	37	17	37565988	37565988	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:37565988T>C	uc002hrv.3	-	17	2698	c.2486A>G	c.(2485-2487)AAC>AGC	p.N829S	MED1_uc010wee.1_Missense_Mutation_p.N657S|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	829	Interaction with ESR1.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		TTCATTATTGTTAGTTTGAAA	0.438										HNSCC(31;0.082)			6	51					0	0	0.00116845	0	0
GSDMA	284110	broad.mit.edu	37	17	38133119	38133119	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:38133119C>T	uc002htl.1	+	12	1264	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F	GSDMA_uc002htm.1_Silent_p.F382F	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	382					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						AGGGTGTTTTCCCCCTGCAAC	0.562													5	43					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	17	39296599	39296599	+	RNA	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:39296599T>C	uc010cxk.1	-	1		c.105A>G								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		AGCACTGGGGTCTGCAGCAGC	0.567													3	43					0	0	0.00198382	0	0
KRT15	3866	broad.mit.edu	37	17	39670283	39670283	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:39670283C>T	uc002hwy.2	-	8	1554	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K	KRT15_uc002hwz.2_Missense_Mutation_p.E357K|KRT15_uc002hxa.2_Missense_Mutation_p.E290K|KRT15_uc002hxb.1_3'UTR	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	455	Tail.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				ACTTAGATTTCTCTCTTGTGG	0.517													7	59					0	0	0.000673444	0	0
CRHR1	1394	broad.mit.edu	37	17	43907570	43907570	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:43907570A>C	uc010dap.2	+	7	897	c.632A>C	c.(631-633)CAG>CCG	p.Q211P	CRHR1_uc010wjx.1_Missense_Mutation_p.Q7P|CRHR1_uc002ijp.2_Missense_Mutation_p.Q81P|CRHR1_uc002ijm.2_Missense_Mutation_p.Q182P|CRHR1_uc002ijn.2_Missense_Mutation_p.Q142P|CRHR1_uc010dar.2_Missense_Mutation_p.Q182P|CRHR1_uc010dao.2_Missense_Mutation_p.Q81P|CRHR1_uc010daq.2_Missense_Mutation_p.Q7P|CRHR1_uc010das.1_RNA|CRHR1_uc002ijo.1_RNA	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	211	Extracellular (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		GAGGTCCACCAGAGCAACGTG	0.642													4	17					0	0	0.00024832	0	0
IMP5	162540	broad.mit.edu	37	17	43922996	43922996	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:43922996G>A	uc010wka.1	+	1	724	c.724G>A	c.(724-726)GAA>AAA	p.E242K	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	242	Cytoplasmic (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		AGCCCAGAAGGAAGATAATGA	0.612													6	42					0	0	0.00116845	0	0
C17orf57	124989	broad.mit.edu	37	17	45487046	45487046	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:45487046C>A	uc002iln.2	+	21	2678	c.2267C>A	c.(2266-2268)CCA>CAA	p.P756Q	C17orf57_uc002ilm.2_Missense_Mutation_p.P660Q	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	756	EF-hand 4.						calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						CTAAAATTACCAAAGGTAAAC	0.313													7	125					0.00307968	0.00688792	0.00307968	1	0
HOXB1	3211	broad.mit.edu	37	17	46607149	46607149	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:46607149G>A	uc002ink.1	-	2	672	c.666C>T	c.(664-666)TTC>TTT	p.F222F		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	222	Homeobox.					nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGTTGAAATGGAACTCCTTTT	0.592													8	79					0	0	0.00307968	0	0
KIF2B	84643	broad.mit.edu	37	17	51901157	51901157	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:51901157C>T	uc002iua.2	+	1	919	c.763C>T	c.(763-765)CTC>TTC	p.L255F	uc010wna.1_Intron	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	255	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						AAAGGTGGACCTCACTCGCTA	0.542													4	31					0	0	0.000602214	0	0
PPM1E	22843	broad.mit.edu	37	17	57043226	57043226	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:57043226C>T	uc002iwx.2	+	3	882	c.755C>T	c.(754-756)CCT>CTT	p.P252L	PPM1E_uc010ddd.2_Intron	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	261	PP2C-like.				protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			GTCTGCATTCCTGACTTTAAT	0.433													5	45					0	0	0.00116845	0	0
PPM1E	22843	broad.mit.edu	37	17	57058163	57058163	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:57058163G>A	uc002iwx.2	+	7	2166	c.2039G>A	c.(2038-2040)AGA>AAA	p.R680K	PPM1E_uc010ddd.2_Missense_Mutation_p.R443K	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	689					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			AAGTGGCACAGATTCAGGTTT	0.438													6	56					0	0	0.00116845	0	0
MED13	9969	broad.mit.edu	37	17	60072573	60072573	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:60072573G>A	uc002izo.2	-	10	2198	c.2121C>T	c.(2119-2121)TTC>TTT	p.F707F		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	707					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						CAGGAAAAAGGAATTCCTCAT	0.343													7	90					0	0	0.00307968	0	0
RGS9	8787	broad.mit.edu	37	17	63186319	63186319	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:63186319G>A	uc002jfe.2	+	11	821	c.711G>A	c.(709-711)ATG>ATA	p.M237I	RGS9_uc010dem.2_Missense_Mutation_p.M234I|RGS9_uc002jfd.2_Missense_Mutation_p.M234I|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Missense_Mutation_p.M8I	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	237	G protein gamma.				intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						AGGCCTTGATGAGGTCCACAG	0.473													14	136					0	0	0.00400662	0	0
PRKCA	5578	broad.mit.edu	37	17	64783058	64783058	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:64783058C>T	uc002jfp.1	+	15	1723	c.1679C>T	c.(1678-1680)TCC>TTC	p.S560F	MIR634_hsa-mir-634|MI0003649_5'Flank	NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	560	Protein kinase.				activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	TATCCAAAATCCTTGTCCAAG	0.433													7	48					0	0	0.00198382	0	0
ENPP7	339221	broad.mit.edu	37	17	77711814	77711814	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:77711814G>A	uc002jxa.2	+	5	1366	c.1346G>A	c.(1345-1347)GGG>GAG	p.G449E		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	449	Helical; (Potential).				negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			GGACTGCTGGGGACCGTGATT	0.632													6	32					0	0	0.00198382	0	0
TEX19	400629	broad.mit.edu	37	17	80320463	80320463	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr17:80320463C>T	uc002keq.2	+	2	746	c.437C>T	c.(436-438)CCC>CTC	p.P146L		NM_207459	NP_997342	Q8NA77	TEX19_HUMAN	testis expressed 19	146						nucleus					0						CAGGGTCTTCCCTGGAGATTT	0.602													5	31					0	0	0.000602214	0	0
DSG1	1828	broad.mit.edu	37	18	28934690	28934690	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr18:28934690C>T	uc002kwp.2	+	15	2743	c.2531C>T	c.(2530-2532)TCT>TTT	p.S844F	DSG1_uc010xbp.1_Missense_Mutation_p.S203F	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	844	Desmoglein repeat 2.|Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TACACCACCTCTGACACTCTG	0.537													5	64					0	0	0.00116845	0	0
KATNAL2	83473	broad.mit.edu	37	18	44580782	44580782	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr18:44580782C>G	uc002lco.2	+	3	283	c.89C>G	c.(88-90)CCG>CGG	p.P30R	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lcp.3_Intron	NM_031303	NP_112593	Q8IYT4	KATL2_HUMAN	katanin p60 subunit A-like 2	102						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						AATAATTTACCGCAAAGAAGT	0.388													9	79					0	0	0.000978159	0	0
DCC	1630	broad.mit.edu	37	18	50918081	50918081	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr18:50918081C>T	uc002lfe.1	+	17	3099	c.2512C>T	c.(2512-2514)CCA>TCA	p.P838S	DCC_uc010xdr.1_Intron|DCC_uc010dpf.1_Intron	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	838	Extracellular (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CACCTCGGTCCCAGATCTCTC	0.463													4	51					0	0	0.00024832	0	0
C18orf54	162681	broad.mit.edu	37	18	51889214	51889214	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr18:51889214C>T	uc002lfn.3	+	4	779	c.663C>T	c.(661-663)TCC>TCT	p.S221S	C18orf54_uc002lfo.3_Silent_p.S382S	NM_173529	NP_775800	Q8IYD9	CR054_HUMAN	hypothetical protein LOC162681 precursor	221						extracellular region				ovary(1)|skin(1)	2				Colorectal(16;0.0206)|READ - Rectum adenocarcinoma(59;0.186)		TACCAAAGTCCATGAAAAAGG	0.348													4	27					0	0	0.00024832	0	0
CCDC102B	79839	broad.mit.edu	37	18	66564557	66564557	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr18:66564557C>T	uc002lkk.2	+	8	1378	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I	CCDC102B_uc002lki.2_Silent_p.I385I|CCDC102B_uc002lkj.1_Silent_p.I385I	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	385	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				GGCTGAAGATCCAGGTGAAAG	0.388													5	45					0	0	0.000602214	0	0
C19orf21	126353	broad.mit.edu	37	19	757081	757082	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:757081_757082GG>AA	uc002lpo.2	+	2	218_219	c.135_136GG>AA	c.(133-138)CAGGAT>CAAAAT	p.D46N		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	46										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTGGGGCCAGGATGAGCCGCA	0.678													4	16					0	0	6.4e-05	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456309	5456309	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:5456309C>T	uc002mca.3	+	1	884	c.807C>T	c.(805-807)TTC>TTT	p.F269F		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	269	Helical; (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		TATCAGCCTTCTTTGTCCTGA	0.662													4	37					0	0	0.00024832	0	0
EMR1	2015	broad.mit.edu	37	19	6913740	6913740	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:6913740C>T	uc002mfw.2	+	11	1237	c.1199C>T	c.(1198-1200)TCC>TTC	p.S400F	EMR1_uc010dvc.2_Missense_Mutation_p.S400F|EMR1_uc010dvb.2_Missense_Mutation_p.S348F|EMR1_uc010xji.1_Missense_Mutation_p.S259F|EMR1_uc010xjj.1_Missense_Mutation_p.S223F	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	400	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					GAGACGTCCTCCCTGGCCACA	0.463													5	59					0	0	0.00116845	0	0
INSR	3643	broad.mit.edu	37	19	7142980	7142980	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:7142980G>A	uc002mgd.1	-	12	2498	c.2389C>T	c.(2389-2391)CCT>TCT	p.P797S	INSR_uc002mge.1_Missense_Mutation_p.P785S	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	797	Fibronectin type-III 2.|Extracellular (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTCTCAAAAGGCCTGTGCTCC	0.617													13	119					0	0	0.00136819	0	0
ACTL9	284382	broad.mit.edu	37	19	8808130	8808130	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:8808130G>A	uc002mkl.2	-	1	1043	c.922C>T	c.(922-924)CCG>TCG	p.P308S		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	308						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						GACAGCCCCGGGACCTCTGGG	0.637													4	30					0	0	0.00024832	0	0
ZNF558	148156	broad.mit.edu	37	19	8922407	8922407	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:8922407G>A	uc002mkn.1	-	6	989	c.759C>T	c.(757-759)AGC>AGT	p.S253S	ZNF558_uc010xkh.1_Silent_p.S182S|ZNF558_uc010dwg.1_Silent_p.S253S	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	253	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						TCCTCTTGTGGCTTTTGAGGT	0.443													6	41					0	0	0.00198382	0	0
ZNF558	148156	broad.mit.edu	37	19	8931968	8931968	+	Silent	SNP	G	A	A	rs143685735	byFrequency	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:8931968G>A	uc002mkn.1	-	3	365	c.135C>T	c.(133-135)TTC>TTT	p.F45F	ZNF558_uc010xkh.1_5'UTR|ZNF558_uc010dwg.1_Silent_p.F45F	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	45	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						CCACATCCTCGAAGGTTACCA	0.587													5	30					0	0	0.00116845	0	0
MUC16	94025	broad.mit.edu	37	19	9046048	9046048	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:9046048C>T	uc002mkp.2	-	5	35787	c.35583G>A	c.(35581-35583)ATG>ATA	p.M11861I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11863	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGTTGGAATCATTGTGCTGG	0.493													7	54					0	0	0.00198382	0	0
MUC16	94025	broad.mit.edu	37	19	9089545	9089545	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:9089545G>A	uc002mkp.2	-	1	2474	c.2270C>T	c.(2269-2271)CCT>CTT	p.P757L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	757	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGATTTCAGGAGTCCCTGT	0.468													11	70					0	0	0.000978159	0	0
ZNF844	284391	broad.mit.edu	37	19	12187394	12187394	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:12187394T>C	uc002mtb.2	+	4	1602	c.1459T>C	c.(1459-1461)TTT>CTT	p.F487L	ZNF844_uc010dym.1_Missense_Mutation_p.F330L	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	487					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCTTCATTTTTTCCACTTCC	0.448													3	27					0	0	6.4e-05	0	0
CPAMD8	27151	broad.mit.edu	37	19	17007076	17007076	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:17007076C>T	uc002nfb.2	-	41	5510	c.5478G>A	c.(5476-5478)CCG>CCA	p.P1826P	CPAMD8_uc010xpj.1_5'UTR|CPAMD8_uc002nfd.1_Silent_p.P291P	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1779						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GTAAAGGCCCCGGGGCCACAG	0.677													4	13					0	0	0.000602214	0	0
KIAA1683	80726	broad.mit.edu	37	19	18377467	18377467	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:18377467C>T	uc002nin.2	-	3	1099	c.883G>A	c.(883-885)GAG>AAG	p.E295K	KIAA1683_uc010ebn.2_Missense_Mutation_p.E295K|KIAA1683_uc010xqe.1_Missense_Mutation_p.E249K	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	295						mitochondrion				ovary(2)	2						AATGGTGTCTCCGGAGCCCTG	0.572													5	65					0	0	0.000602214	0	0
NCAN	1463	broad.mit.edu	37	19	19338150	19338150	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:19338150C>T	uc002nlz.2	+	8	1820	c.1721C>T	c.(1720-1722)CCC>CTC	p.P574L	NCAN_uc010ecc.1_Missense_Mutation_p.P138L	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	574					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			ATGGTCCCACCCAGCATCTCA	0.612													6	40					0	0	0.00198382	0	0
GMIP	51291	broad.mit.edu	37	19	19745511	19745511	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:19745511A>C	uc002nnd.2	-	18	2006	c.1889T>G	c.(1888-1890)CTC>CGC	p.L630R	GMIP_uc010xrb.1_Missense_Mutation_p.L604R|GMIP_uc010xrc.1_Missense_Mutation_p.L601R	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	630	Rho-GAP.				negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						GGGCTCGGTGAGCTGGGGGTG	0.657													6	71					0	0	0.00307968	0	0
Unknown	0	broad.mit.edu	37	19	22780133	22780133	+	RNA	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:22780133G>A	uc002nqu.3	+	2		c.211G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		CTACAGGAGTGAAAAAGAAAA	0.433													5	26					0	0	0.000602214	0	0
ZNF536	9745	broad.mit.edu	37	19	30935406	30935406	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:30935406G>A	uc002nsu.1	+	2	1075	c.937G>A	c.(937-939)GAG>AAG	p.E313K	ZNF536_uc010edd.1_Missense_Mutation_p.E313K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	313	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TTCGCAGGAGGAGGAGCTCAT	0.647													7	66					0	0	0.00307968	0	0
ZNF536	9745	broad.mit.edu	37	19	31039516	31039516	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:31039516G>A	uc002nsu.1	+	4	3128	c.2990G>A	c.(2989-2991)AGC>AAC	p.S997N	ZNF536_uc010edd.1_Missense_Mutation_p.S997N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	997					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GTGCAGGACAGCATTGCATGG	0.582													9	53					0	0	0.000442599	0	0
WDR88	126248	broad.mit.edu	37	19	33647373	33647373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:33647373C>T	uc002nui.2	+	7	1000	c.922C>T	c.(922-924)CGA>TGA	p.R308*		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	308	WD 5.									ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					AGGGGAGTTTCGAAACTGTGG	0.463													6	50					0	0	0.00116845	0	0
KRTDAP	388533	broad.mit.edu	37	19	35978355	35978355	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:35978355C>T	uc002nzh.2	-	6	287	c.275G>A	c.(274-276)AGG>AAG	p.R92K		NM_207392	NP_997275	P60985	KTDAP_HUMAN	keratinocyte differentiation-associated protein	92					cell differentiation	extracellular region					0	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			AGTTGCGCTCCTCAGTCCTTT	0.562													4	44					0	0	0.000602214	0	0
C19orf55	148137	broad.mit.edu	37	19	36256040	36256040	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:36256040C>T	uc002obq.1	+	7	805	c.732C>T	c.(730-732)ATC>ATT	p.I244I		NM_001039887	NP_001034976	Q2NL68	CS055_HUMAN	hypothetical protein LOC148137	244	Ser-rich.									ovary(1)	1	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGACCTTCATCCCTGACTCCA	0.448													5	21					0	0	0.000602214	0	0
ZNF568	374900	broad.mit.edu	37	19	37440580	37440580	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:37440580C>T	uc002ofc.2	+	7	1040	c.525C>T	c.(523-525)TTC>TTT	p.F175F	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Silent_p.F99F|ZNF568_uc010efe.2_Silent_p.F99F|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	175					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GACAAAGCTTCTATGACTGTG	0.338													6	66					0	0	0.00198382	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643895	37643895	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:37643895G>A	uc002ofo.1	-	5	1137	c.906C>T	c.(904-906)AAC>AAT	p.N302N	ZNF585A_uc002ofm.1_Silent_p.N247N|ZNF585A_uc002ofn.1_Silent_p.N247N	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	302	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATTTGCCACAGTTACTGCACT	0.428													7	114					0	0	0.00307968	0	0
RYR1	6261	broad.mit.edu	37	19	38989858	38989858	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:38989858C>T	uc002oit.2	+	43	7132	c.7002C>T	c.(7000-7002)TTC>TTT	p.F2334F	RYR1_uc002oiu.2_Silent_p.F2334F|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2334	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACCTGGACTTCCTGCGCTTTG	0.612													6	36					0	0	0.00307968	0	0
CEACAM4	1089	broad.mit.edu	37	19	42133272	42133272	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:42133272G>A	uc002orh.1	-	1	171	c.60C>T	c.(58-60)ATC>ATT	p.I20I	CEACAM4_uc010xwd.1_Silent_p.I20I	NM_001817	NP_001808	O75871	CEAM4_HUMAN	carcinoembryonic antigen-related cell adhesion	20						integral to plasma membrane|membrane fraction					0						CCTCACCTGTGATCAGGAGCC	0.662													4	15					0	0	0.00024832	0	0
LYPD4	147719	broad.mit.edu	37	19	42342269	42342269	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:42342269G>A	uc002orp.1	-	4	1262	c.278C>T	c.(277-279)TCC>TTC	p.S93F	LYPD4_uc002orq.1_Missense_Mutation_p.S58F	NM_173506	NP_775777	Q6UWN0	LYPD4_HUMAN	LY6/PLAUR domain containing 4 precursor	93						anchored to membrane|plasma membrane				ovary(1)	1						AACAAGGTAGGAGATTTGCGC	0.532													5	42					0	0	0.000602214	0	0
PSG2	5670	broad.mit.edu	37	19	43579656	43579656	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:43579656G>A	uc002ovr.2	-	3	652	c.559C>T	c.(559-561)CTC>TTC	p.L187F	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.L187F|PSG2_uc010eiq.1_Missense_Mutation_p.L187F|PSG2_uc002ovs.3_Missense_Mutation_p.L187F|PSG2_uc002ovt.3_Missense_Mutation_p.L187F	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	187	Ig-like C2-type 1.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				GTCATAGGGAGGCTCTGACCA	0.483													6	83					0	0	0.00116845	0	0
CEACAM20	125931	broad.mit.edu	37	19	45021286	45021286	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:45021286C>T	uc010ejn.1	-	6	1047	c.1031_splice	c.e6-1	p.Y344_splice	CEACAM20_uc010ejo.1_Splice_Site_p.Y344_splice|CEACAM20_uc010ejp.1_Intron|CEACAM20_uc010ejq.1_Intron	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion							integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TCAGGACCATCTGTGTGTAAA	0.522													8	98					0	0	0.00307968	0	0
RTN2	6253	broad.mit.edu	37	19	45998125	45998125	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:45998125A>G	uc002pcb.2	-	3	446	c.218T>C	c.(217-219)GTG>GCG	p.V73A	RTN2_uc002pcc.2_Missense_Mutation_p.V73A|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	73						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		CCCGGAGCCCACTACACCATC	0.692													4	26					0	0	0.000602214	0	0
IL4I1	259307	broad.mit.edu	37	19	50399093	50399093	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:50399093C>T	uc002pqt.1	-	3	309	c.231G>A	c.(229-231)GTG>GTA	p.V77V	IL4I1_uc002pqv.1_Silent_p.V86V|IL4I1_uc010eno.1_Silent_p.V85V|IL4I1_uc002pqw.1_Silent_p.V85V|IL4I1_uc002pqu.1_Silent_p.V99V	NM_152899	NP_690863	Q96RQ9	OXLA_HUMAN	interleukin 4 induced 1 isoform 1 precursor	77						lysosome	L-amino-acid oxidase activity			lung(1)|ovary(1)|prostate(1)	3		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00245)|OV - Ovarian serous cystadenocarcinoma(262;0.0169)		CATCGCTGAGCACCTTGGCGG	0.657													6	63					0	0	0.000442599	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50462044	50462044	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:50462044C>T	uc010ybh.1	-	7	1310	c.1219G>A	c.(1219-1221)GGA>AGA	p.G407R	SIGLEC11_uc010ybi.1_Missense_Mutation_p.G407R	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	407	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		ACGGTCTGTCCCCACCGGGTC	0.682													4	47					0	0	0.00024832	0	0
GPR32	2854	broad.mit.edu	37	19	51274294	51274294	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:51274294C>T	uc010ycf.1	+	1	437	c.437C>T	c.(436-438)CCC>CTC	p.P146L		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	146	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		GTCCTCTACCCCGTCTGGGCC	0.592													5	54					0	0	0.000602214	0	0
KLK8	11202	broad.mit.edu	37	19	51503514	51503514	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:51503514C>T	uc002pur.1	-	4	410	c.231G>A	c.(229-231)CCG>CCA	p.P77P	KLK8_uc002puq.1_Silent_p.P122P|KLK8_uc002pus.1_Intron|KLK8_uc002put.1_Intron|KLK8_uc002puu.1_Silent_p.P77P|KLK9_uc002puv.1_Intron	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	77	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		CTGTGTATTTCCTGTAATGGT	0.368													5	73					0	0	0.00116845	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52004703	52004703	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:52004703G>A	uc002pwx.1	-	1	341	c.285C>T	c.(283-285)CTC>CTT	p.L95L	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	95	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGTCCCCAAGGAGGTGGAATC	0.542													10	76					0	0	0.000978159	0	0
MYADM	91663	broad.mit.edu	37	19	54377066	54377066	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:54377066C>T	uc002qcl.2	+	3	431	c.283C>T	c.(283-285)CCC>TCC	p.P95S	MYADM_uc002qcm.2_Missense_Mutation_p.P95S|MYADM_uc002qcn.2_Missense_Mutation_p.P95S|MYADM_uc002qco.2_Missense_Mutation_p.P95S|MYADM_uc002qcp.2_Missense_Mutation_p.P95S	NM_001020820	NP_001018656	Q96S97	MYADM_HUMAN	myeloid-associated differentiation marker	95	MARVEL 1.					integral to membrane				ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.0488)		GGCCCGCTTCCCCCTGTCTTG	0.612													4	53					0	0	0.000602214	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55286856	55286856	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:55286856G>C	uc002qhb.1	+	4	648	c.610G>C	c.(610-612)GAC>CAC	p.D204H	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.D204H	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	204	Extracellular (Potential).|Ig-like C2-type 2.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CTCTTTCCATGACTCTCCATA	0.562													7	40					0	0	0.00307968	0	0
NLRP4	147945	broad.mit.edu	37	19	56363680	56363680	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:56363680G>A	uc002qmd.3	+	2	656	c.234G>A	c.(232-234)AAG>AAA	p.K78K		NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	78	DAPIN.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TCTTTCAAAAGATGGATAGAA	0.433													7	63					0	0	0.00198382	0	0
NLRP4	147945	broad.mit.edu	37	19	56370027	56370027	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:56370027G>A	uc002qmd.3	+	3	1690	c.1268G>A	c.(1267-1269)GGG>GAG	p.G423E	NLRP4_uc002qmf.2_Missense_Mutation_p.G348E|NLRP4_uc010etf.2_Missense_Mutation_p.G254E	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	423	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CGGAGAAATGGGGTTGTTGAC	0.567													5	54					0	0	0.00116845	0	0
ZNF667	63934	broad.mit.edu	37	19	56952566	56952566	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:56952566G>A	uc002qnd.2	-	5	1960	c.1798C>T	c.(1798-1800)CGA>TGA	p.R600*	ZNF667_uc010etl.2_Nonsense_Mutation_p.R382*|ZNF667_uc002qne.2_Nonsense_Mutation_p.R600*|ZNF667_uc010etm.2_Nonsense_Mutation_p.R543*	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	600	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		TTCTGATGTCGAATCAGGGAT	0.368													6	56					0	0	0.00307968	0	0
ZIM3	114026	broad.mit.edu	37	19	57648291	57648291	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:57648291C>T	uc002qnz.1	-	4	577	c.191G>A	c.(190-192)GGA>GAA	p.G64E		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	64	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGGCTCCTTTCCTTGTTCCAA	0.473													6	43					0	0	0.00198382	0	0
MYT1L	23040	broad.mit.edu	37	2	1805528	1805528	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:1805528G>A	uc002qxe.2	-	23	4043	c.3216C>T	c.(3214-3216)ATC>ATT	p.I1072I	MYT1L_uc002qxd.2_Silent_p.I1070I|MYT1L_uc010ewk.2_Silent_p.I68I	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	1072	Potential.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TTAGCTCCTTGATTTCTTCAT	0.313													11	110					0	0	0.00185496	0	0
ATP6V1C2	245973	broad.mit.edu	37	2	10911994	10911994	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:10911994A>T	uc002ras.2	+	7	609	c.500A>T	c.(499-501)GAT>GTT	p.D167V	ATP6V1C2_uc002rat.2_Missense_Mutation_p.D167V	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	167					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		ACACTGAGTGATATTGTGAGC	0.527													7	85					0	0	0.000274275	0	0
APOB	338	broad.mit.edu	37	2	21229048	21229048	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:21229048C>T	uc002red.2	-	26	10820	c.10692G>A	c.(10690-10692)GAG>GAA	p.E3564E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3564					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCGTACTGTGCTCCCAGAGGG	0.458													15	163					0	0	0.00400662	0	0
APOB	338	broad.mit.edu	37	2	21230570	21230570	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:21230570T>A	uc002red.2	-	26	9298	c.9170A>T	c.(9169-9171)AAA>ATA	p.K3057I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3057					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAAACGAACTTTCAAATTCCC	0.393													14	167					0	0	0.00185496	0	0
APOB	338	broad.mit.edu	37	2	21236264	21236264	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:21236264G>A	uc002red.2	-	25	4112	c.3984C>T	c.(3982-3984)TTC>TTT	p.F1328F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1328					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGGCAGATGGAATCCCACAG	0.468													15	146					0	0	0.00244969	0	0
IFT172	26160	broad.mit.edu	37	2	27699526	27699526	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:27699526T>A	uc002rku.2	-	14	1444	c.1393A>T	c.(1393-1395)ATT>TTT	p.I465F	IFT172_uc002rkw.2_Missense_Mutation_p.I465F|IFT172_uc010yls.1_Missense_Mutation_p.I444F|IFT172_uc010ezc.2_Missense_Mutation_p.I465F|IFT172_uc002rkv.2_Missense_Mutation_p.I439F	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	465					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					ATAGTCTTAATATCAATAAGA	0.353													4	54					0	0	0.00024832	0	0
C2orf16	84226	broad.mit.edu	37	2	27802154	27802154	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:27802154G>A	uc002rkz.3	+	1	2766	c.2715G>A	c.(2713-2715)AGG>AGA	p.R905R		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	905										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTATGGAAAGGAAGCTTTGTT	0.428													8	72					0	0	0.000274275	0	0
PLB1	151056	broad.mit.edu	37	2	28771773	28771773	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:28771773G>A	uc002rmb.1	+	15	983	c.983G>A	c.(982-984)GGG>GAG	p.G328E	PLB1_uc010ezj.1_Missense_Mutation_p.G339E|PLB1_uc002rmc.2_Missense_Mutation_p.G16E	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	328	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GTAAAACACGGGAGGCCAATG	0.547													4	32					0	0	0.00024832	0	0
SPDYA	245711	broad.mit.edu	37	2	29038972	29038972	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:29038972C>T	uc002rmj.2	+	3	298	c.92C>T	c.(91-93)CCC>CTC	p.P31L	SPDYA_uc002rmi.2_Missense_Mutation_p.P31L|SPDYA_uc002rmk.2_Missense_Mutation_p.P31L|SPDYA_uc002rml.2_Missense_Mutation_p.P31L	NM_182756	NP_877433	Q5MJ70	SPDYA_HUMAN	speedy homolog A isoform 1	31					G1/S transition of mitotic cell cycle|multicellular organismal development|positive regulation of cell proliferation|response to DNA damage stimulus	nucleus	protein kinase binding			upper_aerodigestive_tract(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					CCTAAAAAGCCCATTACTCTG	0.378													9	57					0	0	0.000442599	0	0
CLIP4	79745	broad.mit.edu	37	2	29344282	29344282	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:29344282C>T	uc002rmv.2	+	2	267	c.28C>T	c.(28-30)CCA>TCA	p.P10S	CLIP4_uc002rmu.2_Missense_Mutation_p.P10S|CLIP4_uc010ezm.1_Missense_Mutation_p.P10S|CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	10										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TCCAGATTTTCCATTAGAAGG	0.348													7	65					0	0	0.00198382	0	0
XDH	7498	broad.mit.edu	37	2	31570492	31570492	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:31570492G>A	uc002rnv.1	-	29	3251	c.3172C>T	c.(3172-3174)CCC>TCC	p.P1058S		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1058					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTAGAGGTGGGGATTTTCAGA	0.542													7	43					0	0	0.000274275	0	0
CEBPZ	10153	broad.mit.edu	37	2	37455080	37455080	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:37455080A>G	uc002rpz.2	-	2	1286	c.1256T>C	c.(1255-1257)GTT>GCT	p.V419A		NM_005760	NP_005751	Q03701	CEBPZ_HUMAN	CCAAT/enhancer binding protein zeta	419					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding			pancreas(1)	1		all_hematologic(82;0.21)				ACCAGACACAACTCCTTTCAT	0.388													9	83					0	0	0.000673444	0	0
SFRS7	6432	broad.mit.edu	37	2	38976774	38976774	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:38976774G>A	uc002rqz.2	-	3	521	c.283C>T	c.(283-285)CCT>TCT	p.P95S	SFRS7_uc002rra.2_RNA|SFRS7_uc010ynp.1_Missense_Mutation_p.P95S|GEMIN6_uc002rrb.2_5'Flank	NM_001031684	NP_001026854	Q16629	SRSF7_HUMAN	splicing factor, arginine/serine-rich 7	95					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding|zinc ion binding				0		all_hematologic(82;0.248)				CGTCGGGCAGGTGGTCTATCA	0.453													5	45					0	0	0.000602214	0	0
DHX57	90957	broad.mit.edu	37	2	39074213	39074213	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:39074213G>A	uc002rrf.2	-	11	2266	c.2167C>T	c.(2167-2169)CGT>TGT	p.R723C	DHX57_uc002rrd.3_Missense_Mutation_p.R107C|DHX57_uc002rre.2_Missense_Mutation_p.R156C	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	723							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				GGAAATGTACGACCTAGAAAA	0.299													6	26					0	0	0.00116845	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43927299	43927299	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:43927299C>T	uc010yny.1	+	8	1285	c.1202C>T	c.(1201-1203)TCG>TTG	p.S401L	PLEKHH2_uc002rte.3_Missense_Mutation_p.S401L|PLEKHH2_uc002rtf.3_Missense_Mutation_p.S400L	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	401	Poly-Ser.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TCATCTTCATCGAGTGAAGCC	0.398													14	217					0	0	0.00185496	0	0
ABCG5	64240	broad.mit.edu	37	2	44059134	44059134	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:44059134C>T	uc002rtn.2	-	3	494	c.354G>A	c.(352-354)CGG>CGA	p.R118R	ABCG5_uc002rto.2_Silent_p.R37R|ABCG5_uc002rtp.2_5'UTR	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	118	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GGCGCAGCGCCCGGCCGTTCA	0.622													4	56					0	0	0.00024832	0	0
ABCG8	64241	broad.mit.edu	37	2	44099372	44099372	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:44099372C>T	uc002rtq.2	+	8	1228	c.1138C>T	c.(1138-1140)CCA>TCA	p.P380S	ABCG8_uc010yoa.1_Missense_Mutation_p.P379S	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	380	Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CAGCGTGACCCCACTAGACAC	0.567													12	137					0	0	0.00316338	0	0
SLC3A1	6519	broad.mit.edu	37	2	44513267	44513267	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:44513267C>T	uc002ruc.3	+	4	940	c.862C>T	c.(862-864)CGC>TGC	p.R288C	SLC3A1_uc002rty.2_Missense_Mutation_p.R288C|SLC3A1_uc002rtz.2_Missense_Mutation_p.R288C|SLC3A1_uc002rua.2_Missense_Mutation_p.R288C|SLC3A1_uc002rub.2_Missense_Mutation_p.R288C|SLC3A1_uc002rud.3_Missense_Mutation_p.R10C	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	288	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	TTTAAATTTCCGCAATCCTGA	0.343													5	53					0	0	0.000602214	0	0
PRKCE	5581	broad.mit.edu	37	2	46372340	46372340	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:46372340C>T	uc002rut.2	+	12	1898	c.1701C>T	c.(1699-1701)TTC>TTT	p.F567F		NM_005400	NP_005391	Q02156	KPCE_HUMAN	protein kinase C, epsilon	567	Protein kinase.				activation of phospholipase C activity|induction of apoptosis|intracellular signal transduction|nerve growth factor receptor signaling pathway|platelet activation	cytosol|endoplasmic reticulum|plasma membrane	ATP binding|enzyme activator activity|metal ion binding|signal transducer activity			lung(4)|ovary(3)|kidney(1)|breast(1)|large_intestine(1)	10		all_hematologic(82;0.155)|Acute lymphoblastic leukemia(82;0.209)	LUSC - Lung squamous cell carcinoma(58;0.171)			CCACCACGTTCTGTGGGACTC	0.552													5	61					0	0	0.00116845	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48809499	48809499	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:48809499C>T	uc010yol.1	+	1	1774	c.1727C>T	c.(1726-1728)TCG>TTG	p.S576L	STON1_uc002rwo.3_Missense_Mutation_p.S576L|STON1_uc010fbm.2_Missense_Mutation_p.S576L|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.S576L|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.S576L	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	576					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CCTGTCCCATCGCAGTGGATC	0.493													7	64					0	0	0.00198382	0	0
NRXN1	9378	broad.mit.edu	37	2	51255169	51255169	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:51255169C>T	uc010fbq.2	-	2	1720	c.243G>A	c.(241-243)CTG>CTA	p.L81L	NRXN1_uc002rxe.3_Silent_p.L81L|NRXN1_uc002rxd.1_Silent_p.L81L	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	145	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GCGTCAGAATCAGCTCCAGGA	0.667													4	12					0	0	0.000602214	0	0
ANTXR1	84168	broad.mit.edu	37	2	69409754	69409754	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:69409754C>T	uc002sfg.2	+	16	1671	c.1315C>T	c.(1315-1317)CGG>TGG	p.R439W		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	439	Cytoplasmic (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						CAATATGCGTCGGCCTTCTTC	0.438									Familial_Infantile_Hemangioma				6	45					0	0	0.00116845	0	0
GFPT1	2673	broad.mit.edu	37	2	69565122	69565122	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:69565122T>C	uc002sfh.2	-	14	1515	c.1336A>G	c.(1336-1338)ATC>GTC	p.I446V		NM_002056	NP_002047	Q06210	GFPT1_HUMAN	glucosamine-fructose-6-phosphate	464	SIS 1.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			skin(1)	1						GTGTTTGTGATCCCCACAGTT	0.443													4	48					0	0	0.00024832	0	0
CLEC4F	165530	broad.mit.edu	37	2	71039588	71039588	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:71039588C>T	uc002shf.2	-	5	1607	c.1530G>A	c.(1528-1530)AAG>AAA	p.K510K	CLEC4F_uc010yqv.1_Silent_p.K510K	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	510	Extracellular (Potential).|C-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						CCTGCTCCTCCTTGGAGGCCA	0.517													5	25					0	0	0.00116845	0	0
DYSF	8291	broad.mit.edu	37	2	71795188	71795188	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:71795188G>A	uc002sie.2	+	25	2995	c.2619G>A	c.(2617-2619)GGG>GGA	p.G873G	DYSF_uc010feg.2_Silent_p.G904G|DYSF_uc010feh.2_Silent_p.G859G|DYSF_uc002sig.3_Silent_p.G859G|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.G873G|DYSF_uc010fef.2_Silent_p.G890G|DYSF_uc010fei.2_Silent_p.G890G|DYSF_uc010fek.2_Silent_p.G891G|DYSF_uc010fej.2_Silent_p.G860G|DYSF_uc010fel.2_Silent_p.G860G|DYSF_uc010feo.2_Silent_p.G905G|DYSF_uc010fem.2_Silent_p.G874G|DYSF_uc010fen.2_Silent_p.G891G|DYSF_uc002sif.2_Silent_p.G874G	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	873	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TTGCTGAGGGGAAGCTGTCTG	0.592													7	44					0	0	0.00307968	0	0
SMYD5	10322	broad.mit.edu	37	2	73441397	73441397	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:73441397G>A	uc002siw.2	+	1	32	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SMYD5_uc010yre.1_5'UTR	NM_006062	NP_006053	Q6GMV2	SMYD5_HUMAN	SMYD family member 5	1							metal ion binding				0						CGCCCAAGATGGCGGCCTCCA	0.692													7	95					0	0	0.000274275	0	0
DQX1	165545	broad.mit.edu	37	2	74750029	74750029	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:74750029C>T	uc010yrw.1	-	7	1422	c.1257G>A	c.(1255-1257)AGG>AGA	p.R419R	DQX1_uc002smc.2_5'UTR	NM_133637	NP_598376	Q8TE96	DQX1_HUMAN	DEAQ box polypeptide 1 (RNA-dependent ATPase)	419	Helicase C-terminal.					nucleus	ATP binding|helicase activity|nucleic acid binding			ovary(2)	2						CAATCTGTCTCCTTTTTAGTA	0.527													6	64					0	0	0.00116845	0	0
HK2	3099	broad.mit.edu	37	2	75104402	75104402	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:75104402C>T	uc002snd.2	+	8	2911	c.985C>T	c.(985-987)CTC>TTC	p.L329F		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	329	Regulatory.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						CCCAGAGCTTCTCAACACCGG	0.557													10	89					0	0	0.000978159	0	0
DNAH6	1768	broad.mit.edu	37	2	84811238	84811238	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:84811238C>T	uc010fgb.2	+	15	2482	c.2345C>T	c.(2344-2346)TCC>TTC	p.S782F	DNAH6_uc002soo.2_Missense_Mutation_p.S361F|DNAH6_uc002sop.2_Missense_Mutation_p.S361F	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	782	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						ATGAAGCCATCCATTGTTGCT	0.398													9	74					0	0	0.000442599	0	0
FABP1	2168	broad.mit.edu	37	2	88425751	88425751	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:88425751C>T	uc002sst.1	-	2	226	c.184G>A	c.(184-186)GAA>AAA	p.E62K	FABP1_uc002ssu.2_Missense_Mutation_p.E62K	NM_001443	NP_001434	P07148	FABPL_HUMAN	fatty acid binding protein 1, liver	62					organ morphogenesis						0						ACCGTGAATTCGTTTTGGATC	0.517													8	106					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	2	89513351	89513351	+	RNA	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:89513351C>T	uc010ytr.1	-	22		c.2661G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CAGCAGGAGTCCCAGGAGCTG	0.498													4	36					0	0	0.000602214	0	0
SNRNP200	23020	broad.mit.edu	37	2	96952094	96952094	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:96952094G>A	uc002svu.2	-	29	4044	c.3958C>T	c.(3958-3960)CTT>TTT	p.L1320F	SNRNP200_uc002svt.2_5'Flank|SNRNP200_uc010yuj.1_5'Flank|SNRNP200_uc002svv.1_5'Flank|SNRNP200_uc002svw.1_Missense_Mutation_p.L392F	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1320						catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						TCTTGGTAAAGACTCTCAAAG	0.522													7	63					0	0	0.00198382	0	0
AFF3	3899	broad.mit.edu	37	2	100623280	100623280	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:100623280C>T	uc002tag.2	-	6	923	c.687G>A	c.(685-687)CAG>CAA	p.Q229Q	AFF3_uc002taf.2_Silent_p.Q254Q|AFF3_uc010fiq.1_Silent_p.Q229Q|AFF3_uc010yvr.1_Silent_p.Q383Q|AFF3_uc002tah.1_Silent_p.Q254Q|AFF3_uc010fir.1_Silent_p.Q306Q|AFF3_uc002tai.2_Silent_p.Q151Q	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	229					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CGGTCGGTTTCTGCTGGACCA	0.577													4	27					0	0	0.000602214	0	0
NMS	129521	broad.mit.edu	37	2	101097588	101097588	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:101097588G>A	uc002tan.1	+	8	380	c.373G>A	c.(373-375)GAT>AAT	p.D125N		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	125					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						TATGTTGCAGGATCACACTGC	0.368													6	50					0	0	0.00198382	0	0
AMMECR1L	83607	broad.mit.edu	37	2	128627089	128627089	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:128627089G>A	uc002tpl.2	-	6	914	c.663C>T	c.(661-663)TTC>TTT	p.F221F	AMMECR1L_uc002tpm.2_Silent_p.F221F	NM_031445	NP_113633	Q6DCA0	AMERL_HUMAN	AMME chromosomal region gene 1-like	221	AMMECR1.									central_nervous_system(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.07)		TTTCATTAATGAATTCAATTC	0.368													5	38					0	0	0.00116845	0	0
TUBA3E	112714	broad.mit.edu	37	2	130951526	130951526	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:130951526C>T	uc002tqv.2	-	4	990	c.889G>A	c.(889-891)GAG>AAG	p.E297K		NM_207312	NP_997195	Q6PEY2	TBA3E_HUMAN	tubulin, alpha 3e	297					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1	Colorectal(110;0.1)					TTGGCTGGCTCGAAGCAGGCA	0.597													7	54					0	0	0.000274275	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541347	133541347	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:133541347C>T	uc002ttp.2	-	14	3411	c.3037G>A	c.(3037-3039)GAA>AAA	p.E1013K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1013							protein binding				0						ATGACTGCTTCTGGGGAGGGC	0.542													4	24					0	0	0.00024832	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542973	133542973	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:133542973C>T	uc002ttp.2	-	14	1785	c.1411G>A	c.(1411-1413)GAT>AAT	p.D471N	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	471							protein binding				0						GAATCTAGATCATAAACAAAT	0.502													6	50					0	0	0.00116845	0	0
LYPD6	130574	broad.mit.edu	37	2	150327244	150327244	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:150327244C>T	uc002twy.2	+	5	591	c.396C>T	c.(394-396)CCC>CCT	p.P132P	LYPD6_uc010fnt.2_RNA|LYPD6_uc002twz.2_RNA|LYPD6_uc002txa.2_Silent_p.P132P	NM_194317	NP_919298	Q86Y78	LYPD6_HUMAN	LY6/PLAUR domain containing 6 precursor	132	UPAR/Ly6.					extracellular region					0				BRCA - Breast invasive adenocarcinoma(221;0.0667)		TGCCACTGCCCCGAAATGAAA	0.443													5	41					0	0	0.00116845	0	0
TANC1	85461	broad.mit.edu	37	2	160027239	160027239	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:160027239C>T	uc002uag.2	+	10	1548	c.1274C>T	c.(1273-1275)TCC>TTC	p.S425F	TANC1_uc010fol.1_Missense_Mutation_p.S319F|TANC1_uc010zcm.1_Missense_Mutation_p.S417F|TANC1_uc010fom.1_Missense_Mutation_p.S231F	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	425						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						GCAATCATTTCCAAGTTGGTG	0.498													5	47					0	0	0.000602214	0	0
SCN2A	6326	broad.mit.edu	37	2	166172019	166172019	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:166172019C>T	uc002udc.2	+	11	1712	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F	SCN2A_uc002udd.2_Silent_p.F474F|SCN2A_uc002ude.2_Silent_p.F474F	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	474					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CAAGAGACTTCAGTGGTGCTG	0.388													6	34					0	0	0.000274275	0	0
NOSTRIN	115677	broad.mit.edu	37	2	169711967	169711967	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:169711967G>A	uc002ueg.2	+	11	965	c.961G>A	c.(961-963)GAA>AAA	p.E321K	NOSTRIN_uc002uef.2_Missense_Mutation_p.E378K|NOSTRIN_uc002uei.2_Missense_Mutation_p.E204K|NOSTRIN_uc010fpu.2_Missense_Mutation_p.E293K|NOSTRIN_uc002ueh.2_Missense_Mutation_p.E243K|NOSTRIN_uc002uej.2_Missense_Mutation_p.E204K|NOSTRIN_uc002uek.2_5'Flank	NM_001039724	NP_001034813	Q8IVI9	NOSTN_HUMAN	nitric oxide synthase trafficker isoform 2	321					endocytosis|nitric oxide metabolic process|regulation of nitric-oxide synthase activity	cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	protein binding				0						AAAAGACAAGGAAGGTGTGTA	0.393													5	27					0	0	0.000602214	0	0
DLX2	1746	broad.mit.edu	37	2	172966262	172966262	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:172966262G>A	uc002uhn.2	-	2	725	c.513C>T	c.(511-513)TTC>TTT	p.F171F	DLX2_uc010zdx.1_Silent_p.F171F	NM_004405	NP_004396	Q07687	DLX2_HUMAN	distal-less homeobox 2	171	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.216)			GAGTCTTTTGGAAACGCCGCT	0.612													5	22					0	0	0.000602214	0	0
WIPF1	7456	broad.mit.edu	37	2	175439971	175439971	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:175439971C>T	uc002uiy.2	-	5	651	c.319G>A	c.(319-321)GGA>AGA	p.G107R	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Missense_Mutation_p.G107R|WIPF1_uc010fqt.1_Missense_Mutation_p.G107R|WIPF1_uc002ujc.1_Missense_Mutation_p.G107R|WIPF1_uc002uiz.2_Missense_Mutation_p.G107R|WIPF1_uc002ujb.1_Missense_Mutation_p.G107R|WIPF1_uc010zep.1_Missense_Mutation_p.G107R	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	107					actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						TTCGGCATTCCAGCCTGGAAC	0.348													8	86					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179398792	179398792	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179398792C>T	uc010zfg.1	-	307	95070	c.94846G>A	c.(94846-94848)GAA>AAA	p.E31616K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25311K|TTN_uc010zfi.1_Missense_Mutation_p.E25244K|TTN_uc010zfj.1_Missense_Mutation_p.E25119K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32543							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGGTGATTTCGTATTTCTCA	0.403													5	41					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179399404	179399404	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179399404C>T	uc010zfg.1	-	307	94458	c.94234G>A	c.(94234-94236)GAA>AAA	p.E31412K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25107K|TTN_uc010zfi.1_Missense_Mutation_p.E25040K|TTN_uc010zfj.1_Missense_Mutation_p.E24915K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32339							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCATAGTATTCTGGGGCAGTG	0.453													5	33					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179419873	179419873	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179419873G>A	uc010zfg.1	-	280	80833	c.80609C>T	c.(80608-80610)CCT>CTT	p.P26870L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P20565L|TTN_uc010zfi.1_Missense_Mutation_p.P20498L|TTN_uc010zfj.1_Missense_Mutation_p.P20373L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27797							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCAATTACAGGACCACCTGC	0.373													4	26					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179435851	179435851	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179435851G>A	uc010zfg.1	-	275	67528	c.67304C>T	c.(67303-67305)GCT>GTT	p.A22435V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A16130V|TTN_uc010zfi.1_Missense_Mutation_p.A16063V|TTN_uc010zfj.1_Missense_Mutation_p.A15938V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23362							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGGTCACGAGCCACATAACA	0.478													6	41					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179439156	179439156	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179439156C>T	uc010zfg.1	-	275	64223	c.63999G>A	c.(63997-63999)GTG>GTA	p.V21333V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V15028V|TTN_uc010zfi.1_Silent_p.V14961V|TTN_uc010zfj.1_Silent_p.V14836V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22260							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCTGCAATCACCCGGAACT	0.448													8	101					0	0	0.000673444	0	0
TTN	7273	broad.mit.edu	37	2	179439461	179439461	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179439461G>A	uc010zfg.1	-	275	63918	c.63694C>T	c.(63694-63696)CGT>TGT	p.R21232C	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R14927C|TTN_uc010zfi.1_Missense_Mutation_p.R14860C|TTN_uc010zfj.1_Missense_Mutation_p.R14735C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22159							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTTTACACGGAACTGATAC	0.478													5	42					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179577141	179577141	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179577141C>T	uc010zfg.1	-	92	24000	c.23776G>A	c.(23776-23778)GAA>AAA	p.E7926K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E4587K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8853							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTGGAATTTCCAGGATTGCC	0.408													5	63					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179595732	179595732	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179595732T>G	uc010zfg.1	-	57	14152	c.13928A>C	c.(13927-13929)AAG>ACG	p.K4643T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K1304T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5570							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTATCTTTCTTTTCTGTAGA	0.378													9	89					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179596121	179596121	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179596121C>T	uc010zfg.1	-	56	13864	c.13640G>A	c.(13639-13641)GGC>GAC	p.G4547D	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G1208D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5474							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACTTCAATGCCACTGAGGTA	0.403													5	86					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179599268	179599268	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179599268G>A	uc010zfg.1	-	49	11775	c.11551C>T	c.(11551-11553)CAG>TAG	p.Q3851*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.Q512*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4778							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTCACACTGAAGTAGAGCA	0.383													7	70					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179613473	179613473	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179613473C>T	uc002unb.2	-	46	13878	c.13654G>A	c.(13654-13656)GAA>AAA	p.E4552K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	684							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTATTTTTTCCTGTTGTTCC	0.313													7	33					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179638755	179638755	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179638755G>A	uc010zfg.1	-	31	7364	c.7140C>T	c.(7138-7140)TCC>TCT	p.S2380S	TTN_uc010zfh.1_Silent_p.S2334S|TTN_uc010zfi.1_Silent_p.S2334S|TTN_uc010zfj.1_Silent_p.S2334S|TTN_uc002unb.2_Silent_p.S2380S|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2380							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTTTCCAAGGAGACTTTAA	0.473													6	38					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179641103	179641103	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179641103C>T	uc010zfg.1	-	28	5712	c.5488G>A	c.(5488-5490)GGT>AGT	p.G1830S	TTN_uc010zfh.1_Missense_Mutation_p.G1784S|TTN_uc010zfi.1_Missense_Mutation_p.G1784S|TTN_uc010zfj.1_Missense_Mutation_p.G1784S|TTN_uc002unb.2_Missense_Mutation_p.G1830S|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1830							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTGTTACACCTGTAAGTGCA	0.453													5	42					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179665281	179665281	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:179665281C>T	uc002und.2	-	4	649	c.424G>A	c.(424-426)GCC>ACC	p.A142T	TTN_uc010zfg.1_Missense_Mutation_p.A142T|TTN_uc010zfh.1_Missense_Mutation_p.A142T|TTN_uc010zfi.1_Missense_Mutation_p.A142T|TTN_uc010zfj.1_Missense_Mutation_p.A142T|TTN_uc002unb.2_Missense_Mutation_p.A142T			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	142							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGATTTCGGCTCCATCCCGG	0.507													5	53					0	0	0.000602214	0	0
ASNSD1	54529	broad.mit.edu	37	2	190535172	190535172	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:190535172C>T	uc002uqt.2	+	6	2086	c.1652C>T	c.(1651-1653)CCT>CTT	p.P551L		NM_019048	NP_061921	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	551	Asparagine synthetase.				asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			TTTAGATTTCCTTTCCTGGAT	0.299													4	30					0	0	0.00024832	0	0
DNAH7	56171	broad.mit.edu	37	2	196759894	196759894	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:196759894C>T	uc002utj.3	-	30	4803	c.4702G>A	c.(4702-4704)GAT>AAT	p.D1568N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1568					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GCCAGCAAATCATTGTAATCT	0.323													5	31					0	0	0.00198382	0	0
ANKRD44	91526	broad.mit.edu	37	2	197990750	197990750	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:197990750C>A	uc002uuc.2	-	5	440	c.273G>T	c.(271-273)CAG>CAT	p.Q91H	ANKRD44_uc002uua.1_Missense_Mutation_p.Q66H|ANKRD44_uc002uub.2_Missense_Mutation_p.Q91H|ANKRD44_uc010zgw.1_Missense_Mutation_p.Q19H	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	91	ANK 3.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TAATCAAAACCTGTACTGCTT	0.463													6	42					0.000157383	0.000356045	0.00307968	1	0
PLCL1	5334	broad.mit.edu	37	2	198953603	198953603	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:198953603G>A	uc010fsp.2	+	3	3028	c.2737G>A	c.(2737-2739)GAA>AAA	p.E913K	PLCL1_uc002uuv.3_Missense_Mutation_p.E834K	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	913	Potential.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	GTCTATTAAGGAACTATGTGG	0.468													7	161					0	0	0.000274275	0	0
FAM126B	285172	broad.mit.edu	37	2	201876142	201876142	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:201876142G>A	uc002uws.3	-	6	575	c.387C>T	c.(385-387)TCC>TCT	p.S129S	FAM126B_uc002uwu.2_Silent_p.S47S|FAM126B_uc002uwv.2_Silent_p.S129S|FAM126B_uc002uww.1_Silent_p.S129S	NM_173822	NP_776183	Q8IXS8	F126B_HUMAN	hypothetical protein LOC285172	129						intracellular				ovary(1)	1						GCTTGGATAAGGAGGGGATAG	0.299													5	35					0	0	0.00307968	0	0
ALS2CR12	130540	broad.mit.edu	37	2	202208901	202208901	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:202208901G>A	uc010ftg.2	-	6	898	c.454C>T	c.(454-456)CAG>TAG	p.Q152*	ALS2CR12_uc002uya.3_Nonsense_Mutation_p.Q152*|ALS2CR12_uc010fth.2_RNA	NM_139163	NP_631902	Q96Q35	AL2SB_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	152	Potential.				regulation of GTPase activity		protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						ACCAATTTCTGGGCAGACTGG	0.303													6	52					0	0	0.00198382	0	0
NBEAL1	65065	broad.mit.edu	37	2	204016255	204016255	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:204016255G>T	uc002uzt.3	+	34	5776	c.5443G>T	c.(5443-5445)GTA>TTA	p.V1815L	NBEAL1_uc002uzs.3_Missense_Mutation_p.V525L	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	1815							binding			ovary(1)|skin(1)	2						ACTTAAGCTGGTACCGAATTA	0.348													22	176					5.35047e-06	1.21423e-05	0.00332997	1	0
C2orf80	389073	broad.mit.edu	37	2	209046029	209046029	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:209046029C>T	uc002vcr.2	-	5	379	c.207G>A	c.(205-207)CTG>CTA	p.L69L		NM_001099334	NP_001092804	Q0P641	CB080_HUMAN	hypothetical protein LOC389073	69										skin(1)	1						GTGGTATTTTCCTAATGGGGA	0.363													7	28					0	0	0.000274275	0	0
IKZF2	22807	broad.mit.edu	37	2	214012517	214012517	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:214012517G>A	uc002vem.2	-	3	223	c.54C>T	c.(52-54)CCC>CCT	p.P18P	IKZF2_uc010fuu.2_Silent_p.P18P|IKZF2_uc002vej.2_5'UTR|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Silent_p.P18P|IKZF2_uc002vel.2_5'UTR|IKZF2_uc010fuw.2_5'UTR|IKZF2_uc010fux.2_5'UTR|IKZF2_uc010fuy.2_Silent_p.P18P|IKZF2_uc002ven.2_Silent_p.P18P	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	18					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		GCTCCCTTTCGGGTGAAAGCT	0.398													5	71					0	0	0.00116845	0	0
COL4A4	1286	broad.mit.edu	37	2	227946857	227946857	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:227946857C>G	uc010zlt.1	-	23	2324	c.1670G>C	c.(1669-1671)GGT>GCT	p.G557A		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	557	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AACCATGTCACCCTTCGCCCC	0.418													7	96					0	0	0.000274275	0	0
COL4A4	1286	broad.mit.edu	37	2	227946859	227946859	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:227946859C>T	uc010zlt.1	-	23	2322	c.1668G>A	c.(1666-1668)AAG>AAA	p.K556K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	556	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCATGTCACCCTTCGCCCCTT	0.413													7	95					0	0	0.000274275	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883353	228883353	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:228883353C>T	uc002vpq.2	-	7	2264	c.2217G>A	c.(2215-2217)AAG>AAA	p.K739K	SPHKAP_uc002vpp.2_Silent_p.K739K|SPHKAP_uc010zlx.1_Silent_p.K739K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	739						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TGATGGTCTCCTTAGAAAGGA	0.473													7	76					0	0	0.00198382	0	0
DIS3L2	129563	broad.mit.edu	37	2	233195473	233195473	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr2:233195473C>T	uc010fxz.2	+	16	2273	c.1997C>T	c.(1996-1998)TCC>TTC	p.S666F	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	666							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		AACATGTGCTCCCGGCCCATG	0.597													6	55					0	0	0.00198382	0	0
SLC23A2	9962	broad.mit.edu	37	20	4842594	4842594	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:4842594C>T	uc002wlg.1	-	15	1999	c.1624G>A	c.(1624-1626)GGG>AGG	p.G542R	SLC23A2_uc010zqr.1_Missense_Mutation_p.G427R|SLC23A2_uc002wlh.1_Missense_Mutation_p.G542R	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	542					L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						ATTTCCTCACCTGTGACCAGA	0.517													4	48					0	0	0.00024832	0	0
FERMT1	55612	broad.mit.edu	37	20	6065812	6065812	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:6065812C>T	uc002wmr.2	-	12	2283	c.1494G>A	c.(1492-1494)AGG>AGA	p.R498R	FERMT1_uc002wmq.2_Silent_p.R51R|FERMT1_uc010gbt.2_Silent_p.R241R	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	498	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						ATGCAGAGTTCCTGTTTTTCA	0.483													5	42					0	0	0.00116845	0	0
PLCB4	5332	broad.mit.edu	37	20	9449219	9449219	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:9449219G>A	uc002wnf.2	+	34	3350	c.3214G>A	c.(3214-3216)GAA>AAA	p.E1072K	PLCB4_uc010gbx.2_Missense_Mutation_p.E1084K|PLCB4_uc002wne.2_Missense_Mutation_p.E1072K|PLCB4_uc002wnh.2_Missense_Mutation_p.E919K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1072					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AATACATAGGGAAAGCAAGGA	0.239													7	61					0	0	0.00307968	0	0
C20orf103	24141	broad.mit.edu	37	20	9496169	9496169	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:9496169A>T	uc002wni.1	+	2	363	c.134A>T	c.(133-135)AAA>ATA	p.K45I	C20orf103_uc010zrc.1_Missense_Mutation_p.K45I	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	45	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			AACCCTGAAAAAGATATATTT	0.428													6	43					0	0	0.00116845	0	0
PAK7	57144	broad.mit.edu	37	20	9547014	9547014	+	Silent	SNP	T	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:9547014T>G	uc002wnl.2	-	6	1553	c.1008A>C	c.(1006-1008)GCA>GCC	p.A336A	PAK7_uc002wnk.2_Silent_p.A336A|PAK7_uc002wnj.2_Silent_p.A336A|PAK7_uc010gby.1_Silent_p.A336A	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	336	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GGACCATCTGTGCTCGATCGT	0.532													5	58					0	0	0.000602214	0	0
DEFB115	245929	broad.mit.edu	37	20	29847349	29847349	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:29847349G>A	uc002wvp.1	+	2	181	c.181G>A	c.(181-183)GAA>AAA	p.E61K		NM_001037730	NP_001032819	Q30KQ5	DB115_HUMAN	beta-defensin 115 precursor	61					defense response to bacterium	extracellular region				ovary(1)	1			Colorectal(19;0.00445)|COAD - Colon adenocarcinoma(19;0.0347)			AAAATGTGGGGAAAAACATAT	0.373													4	10					0	0	0.00024832	0	0
REM1	28954	broad.mit.edu	37	20	30064370	30064370	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:30064370C>T	uc002wwa.2	+	2	406	c.122C>T	c.(121-123)TCC>TTC	p.S41F		NM_014012	NP_054731	O75628	REM1_HUMAN	RAS-like GTP-binding protein REM	41					small GTPase mediated signal transduction	membrane	calmodulin binding|GTP binding|GTPase activity			lung(2)|pancreas(2)	4	all_cancers(5;0.000119)|Lung NSC(7;1.32e-05)|all_lung(7;2.14e-05)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TCCACTCAATCCCAGCATCCC	0.637													4	18					0	0	0.000602214	0	0
TRPC4AP	26133	broad.mit.edu	37	20	33623094	33623094	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:33623094G>A	uc002xbk.2	-	8	917	c.883C>T	c.(883-885)CCT>TCT	p.P295S	TRPC4AP_uc010zuq.1_5'UTR|TRPC4AP_uc002xbl.2_Missense_Mutation_p.P295S|TRPC4AP_uc010zur.1_Missense_Mutation_p.P256S|TRPC4AP_uc002xbm.1_Missense_Mutation_p.P295S	NM_015638	NP_056453	Q8TEL6	TP4AP_HUMAN	TRPC4-associated protein isoform a	295	Interaction with TNFRSF1A (By similarity).				protein ubiquitination|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00936)			ACAAAGCCAGGAATGCTGAGA	0.498													6	35					0	0	0.00198382	0	0
FAM83C	128876	broad.mit.edu	37	20	33876639	33876639	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:33876639G>A	uc010zux.1	-	2	754	c.636C>T	c.(634-636)TTC>TTT	p.F212F	FAM83C_uc002xcb.1_Silent_p.F36F	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	212										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			ACATCTCCAGGAAGTGCCTCA	0.612													5	41					0	0	0.000602214	0	0
DLGAP4	22839	broad.mit.edu	37	20	35155412	35155412	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:35155412C>G	uc002xff.2	+	13	3383	c.2948C>G	c.(2947-2949)CCG>CGG	p.P983R	DLGAP4_uc010zvp.1_Missense_Mutation_p.P983R|DLGAP4_uc002xfg.2_Missense_Mutation_p.P279R|DLGAP4_uc002xfh.2_Missense_Mutation_p.P447R|DLGAP4_uc002xfi.2_3'UTR|DLGAP4_uc002xfj.2_Missense_Mutation_p.P279R|uc002xfk.3_Intron	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	986					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				ATTTATGTCCCGGAGGCCCAG	0.537													3	34					0	0	6.4e-05	0	0
VSTM2L	128434	broad.mit.edu	37	20	36560081	36560081	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:36560081G>A	uc002xhk.3	+	2	420	c.166G>A	c.(166-168)GAG>AAG	p.E56K		NM_080607	NP_542174	Q96N03	VTM2L_HUMAN	V-set and transmembrane domain containing 2 like	56	Ig-like.									ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				ACGGACGGGCGAGGACGTGGA	0.637													7	60					0	0	0.000442599	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869085	36869085	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:36869085G>A	uc002xhy.1	-	3	1720	c.1448C>T	c.(1447-1449)TCT>TTT	p.S483F	KIAA1755_uc002xhz.1_Missense_Mutation_p.S483F	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	483										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				CGGGGTCACAGAGGGTTGCCT	0.572													4	39					0	0	0.00024832	0	0
LBP	3929	broad.mit.edu	37	20	36974948	36974948	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:36974948C>T	uc002xic.1	+	1	64	c.29C>T	c.(28-30)TCC>TTC	p.S10F		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	10					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				GCCCTGCCGTCCATACTGCTG	0.617													5	26					0	0	0.00198382	0	0
SEMG2	6407	broad.mit.edu	37	20	43851693	43851693	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:43851693G>A	uc010ggz.2	+	2	1477	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K	SEMG2_uc002xnk.2_Missense_Mutation_p.E474K|SEMG2_uc002xnl.2_Intron	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	474	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				TTCAAGTACAGAAGAAAGACG	0.383													6	26					0	0	0.00198382	0	0
WFDC9	259240	broad.mit.edu	37	20	44236765	44236765	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:44236765G>A	uc002xoy.2	-	5	472	c.254C>T	c.(253-255)TCA>TTA	p.S85L		NM_147198	NP_671731	Q8NEX5	WFDC9_HUMAN	protease inhibitor WAP9 precursor	85						extracellular region					0		Myeloproliferative disorder(115;0.0122)				GTTTAGCATTGATTTAAGGGG	0.428													10	99					0	0	0.00136819	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44506092	44506092	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:44506092C>T	uc002xqd.2	+	2	1098	c.895C>T	c.(895-897)CCT>TCT	p.P299S	ZSWIM3_uc010zxg.1_Missense_Mutation_p.P293S	NM_080752	NP_542790	Q96MP5	ZSWM3_HUMAN	zinc finger, SWIM domain containing 3	299							zinc ion binding			ovary(2)	2		Myeloproliferative disorder(115;0.0122)				GGAGATCTTTCCTGCTGCCCG	0.498													5	51					0	0	0.00116845	0	0
ZNF334	55713	broad.mit.edu	37	20	45132877	45132877	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:45132877C>T	uc002xsc.2	-	4	401	c.217G>A	c.(217-219)GAA>AAA	p.E73K	ZNF334_uc002xsa.2_Missense_Mutation_p.E96K|ZNF334_uc002xsb.2_Missense_Mutation_p.E35K|ZNF334_uc002xsd.2_Missense_Mutation_p.E35K|ZNF334_uc010ghl.2_Missense_Mutation_p.E72K	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	73	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				TTTGAGAATTCCTCCACTATC	0.418													6	27					0	0	0.00307968	0	0
STAU1	6780	broad.mit.edu	37	20	47770587	47770587	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:47770587T>C	uc002xud.2	-	4	638	c.227A>G	c.(226-228)GAA>GGA	p.E76G	STAU1_uc002xua.2_5'UTR|STAU1_uc002xub.2_5'UTR|STAU1_uc002xuc.2_5'UTR|STAU1_uc002xue.2_5'UTR|STAU1_uc002xuf.2_5'UTR|STAU1_uc002xug.2_Missense_Mutation_p.E76G	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	76	DRBM 1.					microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			TGCATTTAGTTCTACAGTAGG	0.373													7	64					0	0	0.000274275	0	0
KCNB1	3745	broad.mit.edu	37	20	47990562	47990562	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:47990562G>A	uc002xur.1	-	2	1699	c.1535C>T	c.(1534-1536)CCT>CTT	p.P512L	KCNB1_uc002xus.1_Missense_Mutation_p.P512L	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	512	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GGCTTTTTCAGGGGATCCCTG	0.463													11	117					0	0	0.000978159	0	0
CTCFL	140690	broad.mit.edu	37	20	56083667	56083667	+	Missense_Mutation	SNP	G	C	C	rs61754540		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:56083667G>C	uc010gix.1	-	8	2331	c.1669C>G	c.(1669-1671)CGC>GGC	p.R557G	CTCFL_uc010giw.1_Missense_Mutation_p.R557G|CTCFL_uc002xym.2_Missense_Mutation_p.R557G|CTCFL_uc010giz.1_Missense_Mutation_p.R145G|CTCFL_uc010giy.1_Missense_Mutation_p.R227G|CTCFL_uc010gja.1_Missense_Mutation_p.R507G|CTCFL_uc010gjb.1_Missense_Mutation_p.R557G|CTCFL_uc010gjc.1_Missense_Mutation_p.R557G|CTCFL_uc010gjd.1_Missense_Mutation_p.R557G|CTCFL_uc010gje.2_Missense_Mutation_p.R557G|CTCFL_uc010gjf.2_Missense_Mutation_p.R352G|CTCFL_uc010gjg.2_Missense_Mutation_p.R289G|CTCFL_uc010gjh.1_Missense_Mutation_p.R413G|CTCFL_uc010gji.1_Missense_Mutation_p.R352G|CTCFL_uc010gjj.1_Missense_Mutation_p.R557G|CTCFL_uc010giu.2_RNA|CTCFL_uc010giv.2_RNA	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	557	C2H2-type 11; atypical.				cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CTTACCCAGCGGGAAAAGCCT	0.458													4	69					0	0	0.00024832	0	0
ZBP1	81030	broad.mit.edu	37	20	56185313	56185313	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:56185313G>A	uc002xyo.2	-	7	1266	c.985C>T	c.(985-987)CTC>TTC	p.L329F	ZBP1_uc010gjm.2_Missense_Mutation_p.L328F|ZBP1_uc002xyp.2_Missense_Mutation_p.L254F	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	329						cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			GCGTCCTCGAGAAAGCACGAT	0.597													7	105					0	0	0.00198382	0	0
ZBP1	81030	broad.mit.edu	37	20	56190020	56190020	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:56190020C>T	uc002xyo.2	-	4	706	c.425G>A	c.(424-426)CGA>CAA	p.R142Q	ZBP1_uc010gjm.2_Missense_Mutation_p.R142Q|ZBP1_uc002xyp.2_Missense_Mutation_p.R67Q|ZBP1_uc010zzn.1_Missense_Mutation_p.R142Q	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	142	DRADA 2.					cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			GTACAAGTCTCGGTTCACATC	0.552													6	72					0	0	0.00116845	0	0
LAMA5	3911	broad.mit.edu	37	20	60892524	60892524	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr20:60892524C>T	uc002ycq.2	-	55	7455	c.7388G>A	c.(7387-7389)GGG>GAG	p.G2463E		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2463	Domain II and I.|Potential.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGTCCGAGCCCCATCCAGGCT	0.682													3	13					0	0	0.00024832	0	0
USP25	29761	broad.mit.edu	37	21	17246820	17246820	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr21:17246820C>T	uc002yjy.1	+	22	2991	c.2774C>T	c.(2773-2775)TCA>TTA	p.S925L	USP25_uc011aby.1_Missense_Mutation_p.S995L|USP25_uc002yjz.1_Missense_Mutation_p.S957L|USP25_uc010gla.1_Missense_Mutation_p.S320L	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	925					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		GAATTGATATCACATTATAGA	0.328													6	74					0	0	0.00198382	0	0
C21orf7	56911	broad.mit.edu	37	21	30532271	30532271	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr21:30532271C>T	uc002yne.2	+	7	713	c.442C>T	c.(442-444)CCT>TCT	p.P148S	C21orf7_uc011acr.1_RNA|C21orf7_uc002ynd.2_RNA|C21orf7_uc010gln.2_RNA|C21orf7_uc002ynf.2_Missense_Mutation_p.P148S|C21orf7_uc010glo.2_5'UTR|C21orf7_uc002yng.2_Missense_Mutation_p.P48S|C21orf7_uc010glp.2_RNA	NM_020152	NP_064537	P57077	TAK1L_HUMAN	chromosome 21 open reading frame 7	148						cytosol|nucleus	protein binding			ovary(2)	2				Colorectal(56;0.248)		GCCCCTGCCGCCTTGTCATGA	0.433													4	52					0	0	0.00198382	0	0
DSCAM	1826	broad.mit.edu	37	21	41684100	41684100	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr21:41684100G>A	uc002yyq.1	-	9	2422	c.1970C>T	c.(1969-1971)TCC>TTC	p.S657F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	657	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CGAGAGATTGGAAATCCTCAA	0.537													6	28					0	0	0.00116845	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42861441	42861441	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr21:42861441C>T	uc002yzj.2	-	4	452	c.318G>A	c.(316-318)TGG>TGA	p.W106*	TMPRSS2_uc010gor.2_Nonsense_Mutation_p.W143*|TMPRSS2_uc010gos.1_Nonsense_Mutation_p.W106*	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	106	Extracellular (Potential).				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				TACTGAACTTCCAGAGTAGGC	0.592			T	ERG|ETV1|ETV4|ETV5	prostate 								4	24					0	0	0.000602214	0	0
LOC96610	96610	broad.mit.edu	37	22	23077577	23077577	+	RNA	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:23077577C>T	uc011aim.1	+	187		c.10268C>T								Parts of antibodies, mostly variable regions.												0						GCAGCACTTTCCACAGAGGTC	0.577													7	39					0	0	0.00198382	0	0
MYO18B	84700	broad.mit.edu	37	22	26239721	26239721	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:26239721C>T	uc003abz.1	+	18	3478	c.3228C>T	c.(3226-3228)ACC>ACT	p.T1076T	MYO18B_uc003aca.1_Silent_p.T957T|MYO18B_uc010guy.1_Silent_p.T958T|MYO18B_uc010guz.1_Silent_p.T957T|MYO18B_uc011aka.1_Silent_p.T230T|MYO18B_uc011akb.1_Silent_p.T589T	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1076	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCCTGCGGACCTGTGAGCAGC	0.592													4	37					0	0	0.000602214	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688813	26688813	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:26688813C>G	uc003acb.2	+	2	692	c.536C>G	c.(535-537)GCA>GGA	p.A179G	SEZ6L_uc003acc.2_Missense_Mutation_p.A179G|SEZ6L_uc011akc.1_Missense_Mutation_p.A179G|SEZ6L_uc003acd.2_Missense_Mutation_p.A179G|SEZ6L_uc011akd.1_Missense_Mutation_p.A179G|SEZ6L_uc003ace.2_Missense_Mutation_p.A179G|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	179	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TCCGAGGAGGCATCAGAAGTG	0.662													3	21					0	0	6.4e-05	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30951413	30951413	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:30951413A>C	uc003aig.1	-	4	939	c.799T>G	c.(799-801)TGC>GGC	p.C267G	GAL3ST1_uc003aih.1_Missense_Mutation_p.C267G|GAL3ST1_uc003aii.1_Missense_Mutation_p.C267G|GAL3ST1_uc010gvz.1_Missense_Mutation_p.C267G	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	267	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						AGCTCCCAGCACAGCAGGTCC	0.662													4	39					0	0	0.00024832	0	0
DEPDC5	9681	broad.mit.edu	37	22	32200848	32200848	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:32200848C>T	uc003als.2	+	17	1306	c.1164C>T	c.(1162-1164)CCC>CCT	p.P388P	DEPDC5_uc011als.1_Silent_p.P388P|DEPDC5_uc011alu.1_Silent_p.P388P|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.P388P|DEPDC5_uc003alr.1_Silent_p.P388P|DEPDC5_uc011alt.1_Silent_p.P360P	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	388					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						GGAGTGCTCCCCGTGATTCTC	0.448													9	108					0	0	0.000978159	0	0
CSF2RB	1439	broad.mit.edu	37	22	37326545	37326545	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:37326545G>A	uc003aqa.3	+	7	1064	c.847G>A	c.(847-849)GAT>AAT	p.D283N	CSF2RB_uc003aqc.3_Missense_Mutation_p.D283N	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	283	Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	GCCCAGCCCAGATGCAGGGTG	0.617													9	64					0	0	0.000274275	0	0
ELFN2	114794	broad.mit.edu	37	22	37769893	37769893	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:37769893G>A	uc003asq.3	-	3	2468	c.1682C>T	c.(1681-1683)TCT>TTT	p.S561F		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	561	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TCCCAGAAAAGAGGCCGAGTC	0.632													9	24					0	0	0.000274275	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966859	39966859	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:39966859C>T	uc003ayc.2	+	1	102	c.102C>T	c.(100-102)TCC>TCT	p.S34S	CACNA1I_uc003ayd.2_Silent_p.S34S	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	34	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CCCCATCCTCCCCGCCAGGCC	0.687													5	21					0	0	0.00116845	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45258323	45258323	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:45258323C>T	uc003bfd.2	+	17	2052	c.1780C>T	c.(1780-1782)CCG>TCG	p.P594S	PRR5-ARHGAP8_uc003bfc.2_Missense_Mutation_p.P515S|PRR5-ARHGAP8_uc011aqi.1_Missense_Mutation_p.P506S|PRR5-ARHGAP8_uc011aqj.1_Missense_Mutation_p.P437S|ARHGAP8_uc010gzv.2_3'UTR|ARHGAP8_uc003bfj.2_Missense_Mutation_p.P415S|ARHGAP8_uc003bfk.2_Missense_Mutation_p.P384S|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						CTTCAGCACCCCGGAGGCACC	0.622													4	19					0	0	0.00024832	0	0
WNT7B	7477	broad.mit.edu	37	22	46319209	46319209	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:46319209C>T	uc003bgo.2	-	4	951	c.577G>A	c.(577-579)GAG>AAG	p.E193K	WNT7B_uc010haa.2_Missense_Mutation_p.E197K	NM_058238	NP_478679	P56706	WNT7B_HUMAN	wingless-type MMTV integration site family,	193					activation of JUN kinase activity|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|central nervous system vasculogenesis|chorio-allantoic fusion|developmental growth involved in morphogenesis|embryonic placenta morphogenesis|establishment or maintenance of polarity of embryonic epithelium|fibroblast proliferation|forebrain regionalization|inner medullary collecting duct development|lens fiber cell development|lobar bronchus development|lung epithelium development|lung morphogenesis|lung-associated mesenchyme development|mammary gland epithelium development|metanephric collecting duct development|metanephric loop of Henle development|metanephros morphogenesis|negative regulation of smoothened signaling pathway|outer medullary collecting duct development|oxygen homeostasis|positive regulation of JNK cascade|positive regulation of osteoblast differentiation|renal inner medulla development|renal outer medulla development|stem cell proliferation|synapse organization|trachea cartilage morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled binding|signal transducer activity			lung(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|LUAD - Lung adenocarcinoma(64;0.247)		ATCCGGTCCTCTAGAACCTGC	0.592													4	24					0	0	0.00024832	0	0
MOV10L1	54456	broad.mit.edu	37	22	50599129	50599129	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr22:50599129G>A	uc003bjj.2	+	25	3420	c.3337G>A	c.(3337-3339)GAA>AAA	p.E1113K	MOV10L1_uc003bjk.3_Intron|MOV10L1_uc011arp.1_Missense_Mutation_p.E1093K|MOV10L1_uc003bjl.2_Missense_Mutation_p.E240K	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	1113					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		ACGGTCAAATGAAGATAGATT	0.343													7	44					0	0	0.00198382	0	0
LHFPL4	375323	broad.mit.edu	37	3	9547675	9547675	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:9547675C>T	uc003bry.2	-	3	905	c.619G>A	c.(619-621)GAG>AAG	p.E207K		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	207						integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					TTGAGCTCCTCCTGCAGCAGG	0.612													6	73					0	0	0.00307968	0	0
ATG7	10533	broad.mit.edu	37	3	11340188	11340188	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:11340188G>A	uc003bwc.2	+	2	136	c.19G>A	c.(19-21)GAT>AAT	p.D7N	ATG7_uc003bwd.2_Missense_Mutation_p.D7N|ATG7_uc011aum.1_Missense_Mutation_p.D7N	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	7					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						AGCTACGGGGGATCCTGGACT	0.433													6	73					0	0	0.00307968	0	0
NUP210	23225	broad.mit.edu	37	3	13363271	13363271	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:13363271C>T	uc003bxv.1	-	36	5063	c.4980G>A	c.(4978-4980)ATG>ATA	p.M1660I		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1660	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CTGTCTTCTTCATGCTCAGGT	0.592													10	94					0	0	0.000673444	0	0
WNT7A	7476	broad.mit.edu	37	3	13896091	13896091	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:13896091G>A	uc003bye.1	-	3	813	c.508C>T	c.(508-510)CGG>TGG	p.R170W		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	170					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						TTGATCTCCCGGGCATCCACA	0.632													9	85					0	0	0.000442599	0	0
SCN5A	6331	broad.mit.edu	37	3	38595873	38595873	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:38595873G>A	uc003cio.2	-	27	4904	c.4710C>T	c.(4708-4710)ATC>ATT	p.I1570I	SCN5A_uc003cin.2_Silent_p.I1569I|SCN5A_uc003cil.3_Silent_p.I1570I|SCN5A_uc010hhi.2_Silent_p.I1552I|SCN5A_uc010hhk.2_Silent_p.I1569I|SCN5A_uc011ayr.1_Silent_p.I1516I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1570	Helical; Name=S2 of repeat IV; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGCCTGTGAAGATGGCCACAA	0.488													4	43					0	0	0.000602214	0	0
SCN5A	6331	broad.mit.edu	37	3	38607966	38607966	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:38607966C>T	uc003cio.2	-	21	3968	c.3774G>A	c.(3772-3774)TGG>TGA	p.W1258*	SCN5A_uc003cin.2_Nonsense_Mutation_p.W1257*|SCN5A_uc003cil.3_Nonsense_Mutation_p.W1258*|SCN5A_uc010hhi.2_Nonsense_Mutation_p.W1258*|SCN5A_uc010hhk.2_Nonsense_Mutation_p.W1257*|SCN5A_uc011ayr.1_Nonsense_Mutation_p.W1204*|SCN5A_uc010hhj.1_Nonsense_Mutation_p.W868*	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1258	Helical; Name=S2 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGTAGGCCACCCACTTGAGCA	0.532													4	43					0	0	0.00024832	0	0
CCDC13	152206	broad.mit.edu	37	3	42774963	42774963	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:42774963G>C	uc003cly.3	-	11	1594	c.1510C>G	c.(1510-1512)CGC>GGC	p.R504G		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	504										ovary(1)	1						TTTTCTTACCGAGAAGATCCA	0.537													12	119					0	0	0.00185496	0	0
ANO10	55129	broad.mit.edu	37	3	43616305	43616305	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:43616305A>G	uc003cmv.2	-	7	1385	c.1214T>C	c.(1213-1215)TTA>TCA	p.L405S	ANO10_uc011azs.1_Missense_Mutation_p.L405S|ANO10_uc003cmw.2_Missense_Mutation_p.L339S|ANO10_uc010hil.2_Missense_Mutation_p.L215S|ANO10_uc011azt.1_Missense_Mutation_p.L294S	NM_018075	NP_060545	Q9NW15	ANO10_HUMAN	transmembrane protein 16K	405	Helical; (Potential).				cell death	chloride channel complex	chloride channel activity			ovary(2)	2						ACTTACCACTAAAACTTTCAG	0.303													3	32					0	0	6.4e-05	0	0
TGM4	7047	broad.mit.edu	37	3	44945390	44945390	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:44945390G>A	uc003coc.3	+	9	1059	c.986G>A	c.(985-987)TGG>TAG	p.W329*		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	329					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	TTCCATGTGTGGACGGATGCC	0.592													5	78					0	0	0.000602214	0	0
CCR5	1234	broad.mit.edu	37	3	46415421	46415421	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:46415421C>T	uc003cpo.3	+	3	1150	c.1028C>T	c.(1027-1029)ACT>ATT	p.T343I	CCR5_uc010hjd.2_Missense_Mutation_p.T343I	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	343	Cytoplasmic (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	ACCCGATCCACTGGGGAGCAG	0.512													5	38					0	0	0.000602214	0	0
COL7A1	1294	broad.mit.edu	37	3	48623789	48623789	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:48623789G>T	uc003ctz.2	-	26	3527	c.3526C>A	c.(3526-3528)CCC>ACC	p.P1176T		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1176	Nonhelical region (NC1).|VWFA 2.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCACGGATGGGGCTGAATATG	0.582													8	86					0.000157383	0.000356045	0.00307968	1	0
MST1R	4486	broad.mit.edu	37	3	49933689	49933689	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:49933689G>A	uc003cxy.3	-	10	2852	c.2588C>T	c.(2587-2589)CCC>CTC	p.P863L	MST1R_uc011bdd.1_Missense_Mutation_p.P864L|MST1R_uc011bdc.1_5'UTR	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	863	Extracellular (Potential).				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		GGGTGGATGGGGTGGGGGTAG	0.587													10	52					0	0	0.00185496	0	0
VPRBP	9730	broad.mit.edu	37	3	51475813	51475813	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:51475813G>A	uc003dbe.1	-	8	782	c.614C>T	c.(613-615)CCC>CTC	p.P205L	VPRBP_uc003dbg.1_Missense_Mutation_p.P205L	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	205					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		AGGCAAAAGGGGTTCAGAAGA	0.527													5	90					0	0	0.00116845	0	0
PBRM1	55193	broad.mit.edu	37	3	52651513	52651513	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:52651513T>C	uc003des.2	-	14	1595	c.1583A>G	c.(1582-1584)AAT>AGT	p.N528S	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Missense_Mutation_p.N528S|PBRM1_uc003der.2_Missense_Mutation_p.N496S|PBRM1_uc003det.2_Missense_Mutation_p.N543S|PBRM1_uc003deu.2_Missense_Mutation_p.N543S|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Missense_Mutation_p.N528S|PBRM1_uc010hmk.1_Missense_Mutation_p.N528S|PBRM1_uc003dey.2_Missense_Mutation_p.N528S|PBRM1_uc003dez.1_Missense_Mutation_p.N528S|PBRM1_uc003dfb.1_Missense_Mutation_p.N441S|PBRM1_uc003dfc.2_5'Flank	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	528					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		AAGAACAACATTGAATAAGAT	0.348			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								7	40					0	0	0.00198382	0	0
IL17RB	55540	broad.mit.edu	37	3	53886994	53886994	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:53886994C>T	uc003dha.2	+	5	490	c.451C>T	c.(451-453)CCT>TCT	p.P151S		NM_018725	NP_061195	Q9NRM6	I17RB_HUMAN	interleukin 17B receptor precursor	151	Extracellular (Potential).				defense response|regulation of cell growth	extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)		TGAAGATGGCCCTTCCATGTC	0.423													5	56					0	0	0.00116845	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604093	54604093	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:54604093G>A	uc003dhf.2	+	8	898	c.850G>A	c.(850-852)GAT>AAT	p.D284N	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.D190N|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.D18N	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	284	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		ATCCATTTTGGATACACTTGG	0.448													7	95					0	0	0.00307968	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54930800	54930800	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:54930800G>A	uc003dhf.2	+	26	2319	c.2271G>A	c.(2269-2271)AAG>AAA	p.K757K	CACNA2D3_uc003dhg.1_Silent_p.K663K|CACNA2D3_uc003dhh.1_RNA|uc003dhk.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	757	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CTGGCGACAAGGAGAACATTT	0.522													6	71					0	0	0.00307968	0	0
LRTM1	57408	broad.mit.edu	37	3	54952872	54952872	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:54952872C>T	uc003dhl.2	-	3	786	c.652G>A	c.(652-654)GGA>AGA	p.G218R	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	218	Extracellular (Potential).|LRRCT.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		AGGTCCTTTCCCTTCCAGGTG	0.517													4	22					0	0	0.00024832	0	0
ERC2	26059	broad.mit.edu	37	3	56330089	56330089	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:56330089C>T	uc003dhr.1	-	3	1288	c.1032G>A	c.(1030-1032)GTG>GTA	p.V344V		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	344	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GATCTAAAATCACTTCCAAGT	0.428													7	59					0	0	0.00198382	0	0
CADPS	8618	broad.mit.edu	37	3	62477975	62477975	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:62477975G>A	uc003dll.2	-	20	3234	c.2874C>T	c.(2872-2874)CTC>CTT	p.L958L	CADPS_uc003dlk.1_Silent_p.L455L|CADPS_uc003dlm.2_Silent_p.L968L|CADPS_uc003dln.2_Silent_p.L928L	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	958	MHD1.|Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		AGTCAGTACGGAGAAAATCAT	0.433													6	94					0	0	0.00307968	0	0
CADPS	8618	broad.mit.edu	37	3	62535683	62535683	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:62535683G>A	uc003dll.2	-	11	2221	c.1861C>T	c.(1861-1863)CGG>TGG	p.R621W	CADPS_uc003dlk.1_Missense_Mutation_p.R125W|CADPS_uc003dlm.2_Missense_Mutation_p.R621W|CADPS_uc003dln.2_Missense_Mutation_p.R621W	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	621	PH.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		CCCGTGGCCCGATACATGGCC	0.577													5	36					0	0	0.000602214	0	0
EPHA6	285220	broad.mit.edu	37	3	96706605	96706605	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:96706605C>T	uc010how.1	+	3	925	c.882C>T	c.(880-882)GTC>GTT	p.V294V	EPHA6_uc003drp.1_Silent_p.V294V	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	199	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGGTTTCAGTCCGTGTTTTCT	0.458													11	98					0	0	0.00136819	0	0
EPHA6	285220	broad.mit.edu	37	3	96706657	96706657	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:96706657C>T	uc010how.1	+	3	977	c.934C>T	c.(934-936)CCT>TCT	p.P312S	EPHA6_uc003drp.1_Missense_Mutation_p.P312S	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	217	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GGCCATGTTTCCTGATACCAT	0.468													7	83					0	0	0.00307968	0	0
EPHA6	285220	broad.mit.edu	37	3	97251245	97251245	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:97251245G>A	uc010how.1	+	11	2287	c.2244G>A	c.(2242-2244)GGG>GGA	p.G748G	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Silent_p.G114G|EPHA6_uc003drs.3_Silent_p.G140G|EPHA6_uc003drr.3_Silent_p.G140G|EPHA6_uc003drt.2_Silent_p.G140G|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	653	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AGACACCAGGGAAAAGAGAGA	0.398													6	30					0	0	0.000442599	0	0
OR5H14	403273	broad.mit.edu	37	3	97868711	97868711	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:97868711G>A	uc003dsg.1	+	1	482	c.482G>A	c.(481-483)GGA>GAA	p.G161E		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATCCATGAAGGATTTTTATTC	0.348													6	66					0	0	0.00116845	0	0
OR5K4	403278	broad.mit.edu	37	3	98072976	98072976	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:98072976C>T	uc011bgv.1	+	1	279	c.279C>T	c.(277-279)TCC>TCT	p.S93S		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GAATTATTTCCCTGTATGAAT	0.433													7	123					0	0	0.00307968	0	0
OR5K3	403277	broad.mit.edu	37	3	98110187	98110187	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:98110187G>A	uc011bgw.1	+	1	678	c.678G>A	c.(676-678)ATG>ATA	p.M226I		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATTTACAATGAAATCCAAGG	0.343													6	44					0	0	0.00198382	0	0
PCNP	57092	broad.mit.edu	37	3	101298703	101298703	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:101298703C>T	uc003dva.2	+	2	152	c.134C>T	c.(133-135)TCC>TTC	p.S45F	PCNP_uc003dvb.2_RNA|PCNP_uc003dvc.2_Intron|PCNP_uc003dvd.2_Missense_Mutation_p.S45F	NM_020357	NP_065090	Q8WW12	PCNP_HUMAN	PEST proteolytic signal containing nuclear	45					cell cycle|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination	nucleus	protein binding				0						GGGGAAAGTTCCAGTCGCAGC	0.463													5	34					0	0	0.00116845	0	0
ZPLD1	131368	broad.mit.edu	37	3	102183056	102183056	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:102183056G>A	uc003dvs.1	+	14	1604	c.722G>A	c.(721-723)GGA>GAA	p.G241E	ZPLD1_uc003dvt.1_Missense_Mutation_p.G257E|ZPLD1_uc011bhg.1_Missense_Mutation_p.G241E	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	241	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						ACCCCATCAGGAAACCCAAAT	0.323													5	60					0	0	0.00116845	0	0
CBLB	868	broad.mit.edu	37	3	105586288	105586288	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:105586288G>A	uc003dwc.2	-	2	456	c.134C>T	c.(133-135)ACC>ATC	p.T45I	CBLB_uc011bhi.1_Missense_Mutation_p.T67I|CBLB_uc003dwd.1_Missense_Mutation_p.T45I|CBLB_uc003dwe.1_Missense_Mutation_p.T45I|CBLB_uc011bhj.1_RNA	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	45	Cbl-PTB.|4H.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						CTTCTCCACGGTCCTGCGATC	0.483			Mis S		AML								9	89					0	0	0.000673444	0	0
DPPA2	151871	broad.mit.edu	37	3	109031534	109031534	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:109031534G>A	uc003dxo.2	-	3	286	c.39C>T	c.(37-39)TTC>TTT	p.F13F		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	13						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						CCCCCTCCAAGAAATTCTGGA	0.398													5	45					0	0	0.00116845	0	0
PHLDB2	90102	broad.mit.edu	37	3	111603145	111603145	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:111603145C>T	uc010hqa.2	+	2	632	c.221C>T	c.(220-222)CCT>CTT	p.P74L	PHLDB2_uc003dyc.2_Missense_Mutation_p.P101L|PHLDB2_uc003dyd.2_Missense_Mutation_p.P74L|PHLDB2_uc003dyg.2_Missense_Mutation_p.P74L|PHLDB2_uc003dyh.2_Missense_Mutation_p.P74L|PHLDB2_uc003dye.3_Missense_Mutation_p.P74L|PHLDB2_uc003dyf.3_Missense_Mutation_p.P74L	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	74						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						AGCCCTTCTCCTTTGGGAACC	0.443													10	92					0	0	0.000442599	0	0
SIDT1	54847	broad.mit.edu	37	3	113286433	113286433	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:113286433C>T	uc003eak.2	+	3	1042	c.391C>T	c.(391-393)CCC>TCC	p.P131S	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.P131S|SIDT1_uc011big.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	131	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						CACCTTATGTCCCTCAGAAGC	0.473													5	56					0	0	0.000602214	0	0
MUC13	56667	broad.mit.edu	37	3	124646657	124646657	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:124646657G>A	uc003ehq.1	-	2	257	c.233C>T	c.(232-234)TCC>TTC	p.S78F		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	78	Thr-rich.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						AATTGTGGAGGAACTATGTGT	0.448													7	109					0	0	0.00307968	0	0
PLXNA1	5361	broad.mit.edu	37	3	126708270	126708270	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:126708270C>T	uc003ejg.2	+	1	769	c.765C>T	c.(763-765)TTC>TTT	p.F255F		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	278	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		AGCACTTCTTCACGTCCAAGA	0.587													7	71					0	0	0.00198382	0	0
COL6A6	131873	broad.mit.edu	37	3	130283963	130283963	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:130283963G>A	uc010htl.2	+	3	818	c.787G>A	c.(787-789)GAA>AAA	p.E263K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	263	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TGACATAAAGGAAAATTGCAT	0.393													10	107					0	0	0.000978159	0	0
COL6A6	131873	broad.mit.edu	37	3	130292980	130292980	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:130292980C>T	uc010htl.2	+	7	3189	c.3158C>T	c.(3157-3159)CCA>CTA	p.P1053L		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1053	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CCGGAGTTTCCACTGGGAACT	0.453													6	20					0	0	0.00198382	0	0
IGSF10	285313	broad.mit.edu	37	3	151164503	151164503	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:151164503A>G	uc011bod.1	-	4	3266	c.3266T>C	c.(3265-3267)TTC>TCC	p.F1089S		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1089					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGCTTTGGGGAAGGTGATGGG	0.488													3	81					0	0	0.00024832	0	0
MME	4311	broad.mit.edu	37	3	154801990	154801990	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:154801990G>A	uc010hvr.1	+	2	245	c.34G>A	c.(34-36)GAT>AAT	p.D12N	MME_uc003fab.1_Missense_Mutation_p.D12N|MME_uc003fac.1_Missense_Mutation_p.D12N|MME_uc003fad.1_Missense_Mutation_p.D12N|MME_uc003fae.1_Missense_Mutation_p.D12N	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	12	Cytoplasmic (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	GGATATAACTGATATCAACAC	0.383													7	71					0	0	0.000274275	0	0
SI	6476	broad.mit.edu	37	3	164735569	164735569	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:164735569C>T	uc003fei.2	-	30	3675	c.3613G>A	c.(3613-3615)GCA>ACA	p.A1205T		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1205	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TGCTTTGTTGCAACTTCTGGA	0.323										HNSCC(35;0.089)			4	11					0	0	0.00024832	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907674	164907674	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:164907674G>A	uc003fej.3	-	2	1389	c.945C>T	c.(943-945)TCC>TCT	p.S315S	SLITRK3_uc003fek.2_Silent_p.S315S	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	315	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						AATGAACAGAGGATAGCATTG	0.478										HNSCC(40;0.11)			11	77					0	0	0.000673444	0	0
SERPINI2	5276	broad.mit.edu	37	3	167170742	167170742	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:167170742C>T	uc003fer.1	-	5	1004	c.946G>A	c.(946-948)GAC>AAC	p.D316N	SERPINI2_uc003fes.1_Missense_Mutation_p.D326N|SERPINI2_uc003fet.1_Missense_Mutation_p.D316N	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	316					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						CCAGAAAGGTCGCAGCCACCA	0.284													5	40					0	0	0.00116845	0	0
FAM131A	131408	broad.mit.edu	37	3	184062315	184062315	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:184062315C>T	uc003fog.2	+	3	1929	c.565C>T	c.(565-567)CTC>TTC	p.L189F	FAM131A_uc003fob.1_Missense_Mutation_p.L97F|FAM131A_uc003foc.2_Missense_Mutation_p.L135F|FAM131A_uc003foe.2_Missense_Mutation_p.L135F	NM_144635	NP_653236	Q6UXB0	F131A_HUMAN	hypothetical protein LOC131408 precursor	189						extracellular region				breast(1)	1	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGGGCCGCACCTCCAGGACCT	0.632													4	59					0	0	0.00024832	0	0
ACAP2	23527	broad.mit.edu	37	3	195022715	195022715	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:195022715G>A	uc003fun.3	-	14	1546	c.1305C>T	c.(1303-1305)ATC>ATT	p.I435I		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	435	Arf-GAP.|C4-type.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						CGGAGCACTCGATACACAAGG	0.522													7	65					0	0	0.00198382	0	0
OSTalpha	200931	broad.mit.edu	37	3	195955025	195955025	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr3:195955025G>A	uc003fwd.2	+	5	603	c.402G>A	c.(400-402)ATG>ATA	p.M134I	OSTalpha_uc010iac.1_Missense_Mutation_p.M18I|OSTalpha_uc003fwe.2_Missense_Mutation_p.M1I	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha	134	Helical; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		TGCTGGTCATGGTGGAAGGCT	0.522													6	94					0	0	0.000442599	0	0
HTT	3064	broad.mit.edu	37	4	3184177	3184177	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:3184177C>T	uc011bvq.1	+	38	4997	c.4852C>T	c.(4852-4854)CCA>TCA	p.P1618S		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1616					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CATCATCCTCCCAATGTTAGC	0.493													4	53					0	0	0.00024832	0	0
LOC348926	348926	broad.mit.edu	37	4	3944146	3944146	+	RNA	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:3944146A>G	uc011bvu.1	-	6		c.2936T>C			LOC348926_uc003ghn.2_RNA	NR_024253				Homo sapiens hypothetical protein LOC348926, mRNA (cDNA clone IMAGE:4546485), partial cds.												0						CTGATCCTGCAGGCAAGCTAA	0.537													4	11					0	0	0.00198382	0	0
GBA3	57733	broad.mit.edu	37	4	22749095	22749095	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:22749095G>A	uc003gqp.3	+	3	554	c.463G>A	c.(463-465)GAT>AAT	p.D155N	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Missense_Mutation_p.D156N	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	155					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						TACCTTTGGGGATCGTGTCAA	0.428													11	62					0	0	0.00136819	0	0
SEL1L3	23231	broad.mit.edu	37	4	25785899	25785899	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:25785899T>G	uc003gru.3	-	14	2383	c.2231A>C	c.(2230-2232)AAA>ACA	p.K744T	SEL1L3_uc003grv.2_Missense_Mutation_p.K151T	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	744	Sel1-like 4.					integral to membrane	binding				0						TCTGTTCTTTTTTACTCCTTG	0.403													12	133					0	0	0.000566183	0	0
GABRA4	2557	broad.mit.edu	37	4	46930735	46930735	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:46930735T>C	uc003gxg.2	-	9	1311	c.1172A>G	c.(1171-1173)AAT>AGT	p.N391S		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	391	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AACCAAAGCATTTGTTCTTTT	0.328													4	16					0	0	0.000602214	0	0
PDGFRA	5156	broad.mit.edu	37	4	55136834	55136834	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:55136834G>A	uc003han.3	+	8	1487	c.1156G>A	c.(1156-1158)GAA>AAA	p.E386K	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.E280K|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	386	Ig-like C2-type 4.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	CCGTGCTAAGGAAGAAGACAG	0.338			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			5	62					0	0	0.000602214	0	0
UGT2B15	7366	broad.mit.edu	37	4	69535692	69535692	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:69535692C>T	uc011cal.1	-	1	683	c.645G>A	c.(643-645)ATG>ATA	p.M215I		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	215					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						GCATATGTATCATATTTTTTA	0.343													10	101					0	0	0.000673444	0	0
ENAM	10117	broad.mit.edu	37	4	71508794	71508794	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:71508794G>A	uc011caw.1	+	9	1932	c.1651G>A	c.(1651-1653)GAA>AAA	p.E551K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	551					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			ATACCCTGAGGAAATCCCTTC	0.428													7	83					0	0	0.000442599	0	0
SLC4A4	8671	broad.mit.edu	37	4	72222842	72222842	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:72222842C>T	uc003hfy.2	+	6	785	c.668C>T	c.(667-669)TCC>TTC	p.S223F	SLC4A4_uc010iic.2_Missense_Mutation_p.S223F|SLC4A4_uc010iib.2_Missense_Mutation_p.S223F|SLC4A4_uc003hfz.2_Missense_Mutation_p.S223F|SLC4A4_uc003hgc.3_Missense_Mutation_p.S179F|SLC4A4_uc003hga.2_Missense_Mutation_p.S101F|SLC4A4_uc003hgb.3_Missense_Mutation_p.S179F	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	223	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			AACCTTCGGTCCCTGGCTGAC	0.483													5	33					0	0	0.000602214	0	0
ALB	213	broad.mit.edu	37	4	74283258	74283258	+	Missense_Mutation	SNP	C	T	T	rs78575701		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:74283258C>T	uc003hgs.3	+	11	1373	c.1300C>T	c.(1300-1302)CGT>TGT	p.R434C	ALB_uc003hgw.3_Missense_Mutation_p.R242C|ALB_uc011cbe.1_Missense_Mutation_p.R113C|ALB_uc003hgt.3_Missense_Mutation_p.R434C|ALB_uc010iii.2_Missense_Mutation_p.R319C|ALB_uc003hgu.3_Missense_Mutation_p.R284C|ALB_uc003hgv.3_Missense_Mutation_p.R113C|ALB_uc011cbf.1_Missense_Mutation_p.R324C|ALB_uc010iij.2_Intron|ALB_uc003hgx.3_Missense_Mutation_p.R113C	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	434	Albumin 3.		R -> C (in Liprizzi).		bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	GCTATTAGTTCGTTACACCAA	0.403													5	23					0	0	0.000602214	0	0
PARM1	25849	broad.mit.edu	37	4	75937875	75937875	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:75937875C>T	uc003hih.1	+	2	524	c.284C>T	c.(283-285)TCG>TTG	p.S95L		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	95	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						AGCCCAGGTTCGAATTGGGAA	0.527													5	37					0	0	0.00116845	0	0
CNOT6L	246175	broad.mit.edu	37	4	78647417	78647417	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:78647417A>T	uc011ccd.1	-	11	1490	c.1359T>A	c.(1357-1359)AAT>AAA	p.N453K	CNOT6L_uc003hks.2_Missense_Mutation_p.N453K|CNOT6L_uc003hkt.1_Missense_Mutation_p.N296K	NM_144571	NP_653172	Q96LI5	CNO6L_HUMAN	CCR4-NOT transcription complex, subunit 6-like	453					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	exonuclease activity|protein binding			large_intestine(1)	1						CTGAGCTTCCATTCTTTCCAT	0.398													9	85					0	0	0.000442599	0	0
DMP1	1758	broad.mit.edu	37	4	88584110	88584110	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:88584110C>T	uc003hqv.2	+	6	1284	c.1180C>T	c.(1180-1182)CAC>TAC	p.H394Y	DMP1_uc003hqw.2_Missense_Mutation_p.H378Y	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	394					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		CACACTCTCCCACTCAAAAAG	0.542													4	53					0	0	0.00116845	0	0
HERC5	51191	broad.mit.edu	37	4	89384698	89384698	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:89384698C>T	uc003hrt.2	+	5	857	c.704C>T	c.(703-705)TCC>TTC	p.S235F		NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	235	RCC1 3.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		GATGATCCATCCCTTATTGAA	0.438													4	49					0	0	0.000602214	0	0
GPRIN3	285513	broad.mit.edu	37	4	90169722	90169722	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:90169722A>G	uc003hsm.1	-	2	2059	c.1540T>C	c.(1540-1542)TCT>CCT	p.S514P		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	514										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		GAGCCACAAGAGTCAGATAGT	0.443													3	60					0	0	0.00024832	0	0
C4orf37	285555	broad.mit.edu	37	4	98902377	98902377	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:98902377C>T	uc003htt.1	-	6	795	c.705G>A	c.(703-705)CTG>CTA	p.L235L		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	235											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		GAATATTTTTCAGTCCTGATG	0.393													7	70					0	0	0.00307968	0	0
TSPAN5	10098	broad.mit.edu	37	4	99407933	99407933	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:99407933C>T	uc003hub.2	-	3	585	c.235G>A	c.(235-237)GGG>AGG	p.G79R	TSPAN5_uc011cdz.1_Missense_Mutation_p.G8R	NM_005723	NP_005714	P62079	TSN5_HUMAN	transmembrane 4 superfamily member 9	79	Helical; (Potential).					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;1.89e-07)		CCAATGCACCCTGCAAATCCC	0.473													4	43					0	0	0.00024832	0	0
ADH1C	126	broad.mit.edu	37	4	100264011	100264011	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:100264011C>T	uc003huu.2	-	8	854	c.769G>A	c.(769-771)GAA>AAA	p.E257K		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	257					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	TCAGTCATTTCCTTTAGCACT	0.458									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				14	139					0	0	0.00185496	0	0
LRIT3	345193	broad.mit.edu	37	4	110788890	110788890	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:110788890C>T	uc003hzx.3	+	2	741	c.548C>T	c.(547-549)CCA>CTA	p.P183L	LRIT3_uc003hzw.3_Missense_Mutation_p.P45L	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	183	LRRCT.					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		CTTCTGGATCCACTGATGACT	0.463													4	32					0	0	0.00024832	0	0
LARP7	51574	broad.mit.edu	37	4	113567957	113567958	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:113567957_113567958CC>AA	uc003iay.2	+	5	676_677	c.398_399CC>AA	c.(397-399)CCC>CAA	p.P133Q	LARP7_uc003iaz.2_Missense_Mutation_p.P140Q|LARP7_uc003iba.2_Missense_Mutation_p.P54Q|LARP7_uc003ibb.2_Missense_Mutation_p.P133Q	NM_016648	NP_057732	Q4G0J3	LARP7_HUMAN	La ribonucleoprotein domain family, member 7	133	RRM.				RNA processing	nucleoplasm|ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(3)	3		Ovarian(17;0.0443)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		GAGTTACTTCCCAAAAATGTTA	0.292													7	75					0	0	6.4e-05	0	0
KIAA1109	84162	broad.mit.edu	37	4	123192396	123192396	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:123192396C>T	uc003ieh.2	+	45	7762	c.7717C>T	c.(7717-7719)CGT>TGT	p.R2573C	KIAA1109_uc003iel.1_Missense_Mutation_p.R508C|KIAA1109_uc003iek.2_Missense_Mutation_p.R1192C	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2573					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GGCTTTGGTTCGTCTTATTCA	0.393													6	53					0	0	0.00116845	0	0
IL21	59067	broad.mit.edu	37	4	123542164	123542164	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:123542164C>T	uc003ies.2	-	1	48	c.3G>A	c.(1-3)ATG>ATA	p.M1I	uc003iet.2_RNA|IL21_uc010int.2_5'UTR	NM_021803	NP_068575	Q9HBE4	IL21_HUMAN	interleukin 21	Error:Variant_position_missing_in_Q9HBE4_after_alignment					cell maturation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-17 production|positive regulation of T cell proliferation|signal transduction	extracellular space	cytokine activity|interleukin-2 receptor binding				0						GACTGGATCTCATAAGTACCA	0.468													6	38					0	0	0.00116845	0	0
FAT4	79633	broad.mit.edu	37	4	126411106	126411106	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:126411106C>T	uc003ifj.3	+	17	13129	c.13129C>T	c.(13129-13131)CCT>TCT	p.P4377S	FAT4_uc011cgp.1_Missense_Mutation_p.P2618S|FAT4_uc003ifi.1_Missense_Mutation_p.P1854S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4377	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGAAAGTCTTCCTTTCAGCGG	0.458													8	96					0	0	0.00307968	0	0
FAT4	79633	broad.mit.edu	37	4	126411353	126411353	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:126411353G>A	uc003ifj.3	+	17	13376	c.13376G>A	c.(13375-13377)GGA>GAA	p.G4459E	FAT4_uc011cgp.1_Missense_Mutation_p.G2700E|FAT4_uc003ifi.1_Missense_Mutation_p.G1936E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4459	EGF-like 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TCGCACACGGGAAGGACCTGT	0.627													6	51					0	0	0.00198382	0	0
PLK4	10733	broad.mit.edu	37	4	128812330	128812330	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:128812330G>A	uc003ifo.2	+	8	2159	c.1914G>A	c.(1912-1914)CAG>CAA	p.Q638Q	PLK4_uc011cgs.1_Silent_p.Q606Q|PLK4_uc011cgt.1_Silent_p.Q597Q	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	638					G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						AAGTTCTTCAGATATCTAGTG	0.328													7	50					0	0	0.00198382	0	0
PCDH10	57575	broad.mit.edu	37	4	134072190	134072190	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:134072190G>A	uc003iha.2	+	1	1721	c.895G>A	c.(895-897)GAG>AAG	p.E299K	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.E299K	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	299	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		CCGGGCGCGGGAGCTTTTCGG	0.617													4	25					0	0	0.00024832	0	0
ELF2	1998	broad.mit.edu	37	4	140058853	140058853	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:140058853C>A	uc003ihp.1	-	2	209	c.3G>T	c.(1-3)ATG>ATT	p.M1I	ELF2_uc003ihq.2_RNA	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	1					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					CTGCTGATGTCATTGTTATTC	0.358													7	71					0.000157383	0.000356045	0.00307968	1	0
NR3C2	4306	broad.mit.edu	37	4	149115960	149115960	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:149115960G>A	uc003ilj.3	-	4	2285	c.1951C>T	c.(1951-1953)CGA>TGA	p.R651*	NR3C2_uc003ilk.3_Nonsense_Mutation_p.R651*|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	651	NR C4-type.|Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	TTCTTTCGTCGAATCTTATCA	0.294													7	70					0	0	0.00307968	0	0
FGA	2243	broad.mit.edu	37	4	155505342	155505342	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:155505342G>A	uc003iod.1	-	6	2593	c.2535C>T	c.(2533-2535)TCC>TCT	p.S845S		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	845	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CCCCTCTAAAGGAAACCCAGA	0.498													4	36					0	0	0.00024832	0	0
TKTL2	84076	broad.mit.edu	37	4	164393292	164393292	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:164393292G>A	uc003iqp.3	-	1	1756	c.1595C>T	c.(1594-1596)TCT>TTT	p.S532F		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	532						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GACACGGACAGAAATACCTTG	0.498													7	69					0	0	0.00307968	0	0
TLL1	7092	broad.mit.edu	37	4	166795173	166795173	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:166795173G>A	uc003irh.1	+	1	764	c.117G>A	c.(115-117)GGG>GGA	p.G39G	TLL1_uc011cjn.1_Silent_p.G39G|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	39					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		CTTTTGATGGGAACGAAGAGG	0.567													9	103					0	0	0.000442599	0	0
HAND2	9464	broad.mit.edu	37	4	174448523	174448523	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:174448523C>T	uc003ith.1	-	2	1497	c.559G>A	c.(559-561)GAA>AAA	p.E187K	HAND2_uc003itg.1_Missense_Mutation_p.R152Q	NM_021973	NP_068808	P61296	HAND2_HUMAN	basic helix-loop-helix transcription factor	187					adult heart development|angiogenesis|apoptosis|cardiac neural crest cell development involved in outflow tract morphogenesis|heart looping|in utero embryonic development|negative regulation of cardiac muscle cell apoptosis|noradrenergic neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|regulation of secondary heart field cardioblast proliferation|thymus development	nuclear chromatin|transcription factor complex	activating transcription factor binding|protein homodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|transcription coactivator activity			skin(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.37e-18)|Epithelial(43;5.5e-17)|OV - Ovarian serous cystadenocarcinoma(60;3.3e-10)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TTCAAGATTTCGTTCTGGACA	0.547													6	78					0	0	0.00307968	0	0
MORF4	10934	broad.mit.edu	37	4	174537479	174537479	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:174537479G>A	uc011cke.1	-	1	316	c.316C>T	c.(316-318)CTT>TTT	p.L106F		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TAGTCCTCAAGAATGGAATCC	0.393													14	116					0	0	0.00400662	0	0
SORBS2	8470	broad.mit.edu	37	4	186548105	186548105	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:186548105C>T	uc003iyl.2	-	12	1661	c.803G>A	c.(802-804)GGC>GAC	p.G268D	SORBS2_uc003iyh.2_Missense_Mutation_p.G519D|SORBS2_uc011ckw.1_Missense_Mutation_p.G356D|SORBS2_uc003iyi.2_Missense_Mutation_p.G426D|SORBS2_uc011ckx.1_Missense_Mutation_p.G361D|SORBS2_uc003iyk.2_Missense_Mutation_p.G339D|SORBS2_uc003iym.2_Missense_Mutation_p.G368D|SORBS2_uc003iyn.1_Missense_Mutation_p.G386D|SORBS2_uc011cky.1_Missense_Mutation_p.G331D|SORBS2_uc011cku.1_Missense_Mutation_p.G187D|SORBS2_uc011ckv.1_Missense_Mutation_p.G172D|SORBS2_uc003iyd.2_Missense_Mutation_p.G494D|SORBS2_uc003iye.2_Missense_Mutation_p.G368D|SORBS2_uc003iya.2_Missense_Mutation_p.G315D|SORBS2_uc003iyb.2_Missense_Mutation_p.G268D|SORBS2_uc003iyc.2_Missense_Mutation_p.G248D|SORBS2_uc003iyg.2_Missense_Mutation_p.G382D|SORBS2_uc003iyf.2_Missense_Mutation_p.G331D|SORBS2_uc003iyo.1_Missense_Mutation_p.G244D	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	268						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		ATCTCCCAAGCCCCGTGGTGG	0.542													7	55					0	0	0.00307968	0	0
ZFP42	132625	broad.mit.edu	37	4	188924289	188924289	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:188924289G>T	uc003izg.1	+	3	573	c.328G>T	c.(328-330)GTT>TTT	p.V110F	ZFP42_uc003izh.1_Missense_Mutation_p.V110F|ZFP42_uc003izi.1_Missense_Mutation_p.V110F	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	110					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		TTCTCAAAAGGTTTTCGAAGC	0.403													6	59					0.00116845	0.00262961	0.00116845	1	0
TRIML2	205860	broad.mit.edu	37	4	189012810	189012810	+	Missense_Mutation	SNP	G	A	A	rs141991055	by1000genomes	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:189012810G>A	uc003izl.2	-	7	917	c.881C>T	c.(880-882)TCG>TTG	p.S294L	TRIML2_uc003izj.1_Missense_Mutation_p.S122L|TRIML2_uc003izk.1_Missense_Mutation_p.S102L|TRIML2_uc011cle.1_Missense_Mutation_p.S369L	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	294	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CCCCATCACCGACCCCGTGAG	0.572													8	75					0	0	0.000442599	0	0
TRIML2	205860	broad.mit.edu	37	4	189022221	189022221	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:189022221C>T	uc003izl.2	-	3	355	c.319G>A	c.(319-321)GAA>AAA	p.E107K	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Missense_Mutation_p.E157K|TRIML2_uc011clf.1_Missense_Mutation_p.E157K	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	107	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TGTAGCATTTCCTGGAACATC	0.403													4	25					0	0	0.00024832	0	0
TRIML1	339976	broad.mit.edu	37	4	189068223	189068223	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr4:189068223C>T	uc003izm.1	+	6	1219	c.1104C>T	c.(1102-1104)CTC>CTT	p.L368L	TRIML1_uc003izn.1_Silent_p.L92L	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	368	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		AGGGGAATCTCCCCAAGCCAC	0.527													6	57					0	0	0.00198382	0	0
KIAA0947	23379	broad.mit.edu	37	5	5462565	5462565	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:5462565A>T	uc003jdm.3	+	13	3340	c.3118A>T	c.(3118-3120)AGC>TGC	p.S1040C		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1040										ovary(1)|central_nervous_system(1)	2						TGATTCTACCAGCACACCACA	0.473													6	82					0	0	0.00198382	0	0
NSUN2	54888	broad.mit.edu	37	5	6618103	6618103	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:6618103A>C	uc003jdu.2	-	8	915	c.850T>G	c.(850-852)TGG>GGG	p.W284G	NSUN2_uc003jdt.2_Missense_Mutation_p.W48G|NSUN2_uc011cmk.1_Missense_Mutation_p.W249G|NSUN2_uc003jdv.2_Missense_Mutation_p.W48G	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	284						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						CACTTTTTCCAAACATCAATG	0.393													5	62					0	0	0.00198382	0	0
CTNND2	1501	broad.mit.edu	37	5	11732292	11732292	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:11732292C>T	uc003jfa.1	-	2	275	c.130G>A	c.(130-132)GAA>AAA	p.E44K	CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	44					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GTTTCTGTTTCAGAGCCATCC	0.488													5	37					0	0	0.000602214	0	0
DNAH5	1767	broad.mit.edu	37	5	13736031	13736032	+	Missense_Mutation	DNP	CC	TT	TT	rs140380565		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:13736031_13736032CC>TT	uc003jfd.2	-	67	11507_11508	c.11465_11466GG>AA	c.(11464-11466)CGG>CAA	p.R3822Q	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3822					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGATGCTGCCCCGCGTAGCCAC	0.446									Kartagener_syndrome				5	43					0	0	6.4e-05	0	0
DNAH5	1767	broad.mit.edu	37	5	13786434	13786434	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:13786434C>T	uc003jfd.2	-	52	8716	c.8674G>A	c.(8674-8676)GAA>AAA	p.E2892K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2892					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTAGGTGTTTCAGCATCAGCC	0.388									Kartagener_syndrome				5	30					0	0	0.00116845	0	0
CDH18	1016	broad.mit.edu	37	5	19747232	19747232	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:19747232T>A	uc003jgc.2	-	3	719	c.342A>T	c.(340-342)AAA>AAT	p.K114N	CDH18_uc003jgd.2_Missense_Mutation_p.K114N|CDH18_uc011cnm.1_Missense_Mutation_p.K114N	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	114	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TGTCTAGGCTTTTTGTTGAGT	0.443													7	59					0	0	0.00198382	0	0
PDZD2	23037	broad.mit.edu	37	5	32090175	32090176	+	Missense_Mutation	DNP	GG	AA	AA	rs138558075		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:32090175_32090176GG>AA	uc003jhl.2	+	20	7009_7010	c.6621_6622GG>AA	c.(6619-6624)TCGGGG>TCAAGG	p.G2208R	PDZD2_uc003jhm.2_Missense_Mutation_p.G2208R	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2208					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GGGGCCCCTCGGGGGAGGACCA	0.579													10	101					0	0	6.4e-05	0	0
MTMR12	54545	broad.mit.edu	37	5	32248159	32248159	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:32248159G>A	uc003jhq.2	-	10	1140	c.970C>T	c.(970-972)CTG>TTG	p.L324L	MTMR12_uc010iuk.2_Silent_p.L324L|MTMR12_uc010iul.2_Silent_p.L324L	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	324	Myotubularin phosphatase.					cytoplasm	phosphatase activity			ovary(1)	1						ATTTCCTGCAGGGACAGGAAG	0.378													4	36					0	0	0.00116845	0	0
NPR3	4883	broad.mit.edu	37	5	32712194	32712194	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:32712194G>A	uc003jhv.2	+	1	530	c.312G>A	c.(310-312)GAG>GAA	p.E104E	NPR3_uc010iuo.2_Intron|NPR3_uc011cnz.1_Intron|NPR3_uc003jhu.2_Silent_p.E104E	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	104	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	TGGCTTACGAGGATTCAGACT	0.687													4	38					0	0	0.00024832	0	0
AMACR	23600	broad.mit.edu	37	5	34005978	34005978	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:34005978G>A	uc003jig.2	-	2	356	c.274C>T	c.(274-276)CCA>TCA	p.P92S	AMACR_uc003jih.2_Missense_Mutation_p.P92S|AMACR_uc003jii.2_Missense_Mutation_p.P92S|AMACR_uc003jij.2_Missense_Mutation_p.P92S|AMACR_uc003jil.1_Missense_Mutation_p.P92S|AMACR_uc003jik.1_Missense_Mutation_p.P92S	NM_014324	NP_055139	Q9UHK6	AMACR_HUMAN	alpha-methylacyl-CoA racemase isoform 1	92					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	mitochondrion|peroxisomal matrix	alpha-methylacyl-CoA racemase activity				0						AGAATCTCTGGGCCCAGCTGG	0.468													4	47					0	0	0.00024832	0	0
SKP2	6502	broad.mit.edu	37	5	36168422	36168422	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:36168422C>T	uc003jkc.1	+	5	726	c.544C>T	c.(544-546)CGT>TGT	p.R182C	SKP2_uc011cou.1_Intron|SKP2_uc003jkd.2_Missense_Mutation_p.R182C	NM_005983	NP_005974	Q13309	SKP2_HUMAN	S-phase kinase-associated protein 2 isoform 1	182	LRR 2.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G1/S transition of mitotic cell cycle|S phase of mitotic cell cycle	nucleoplasm|SCF ubiquitin ligase complex	protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4	all_lung(31;5.63e-05)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TAGCCCTTTTCGTGTACAGCA	0.498													9	85					0	0	0.000274275	0	0
LIFR	3977	broad.mit.edu	37	5	38482185	38482185	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:38482185G>A	uc010ive.1	-	20	3138	c.2806C>T	c.(2806-2808)CGC>TGC	p.R936C	LIFR_uc003jli.2_Missense_Mutation_p.R936C	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	936	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					GCATCAGAGCGATCTTCAGGA	0.453			T	PLAG1	salivary adenoma								6	53					0	0	0.00198382	0	0
CARD6	84674	broad.mit.edu	37	5	40853995	40853995	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:40853995C>T	uc003jmg.2	+	3	2636	c.2561C>T	c.(2560-2562)TCC>TTC	p.S854F		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	854					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CACTCCTATTCCCTGGATTCA	0.502													15	68					0	0	0.000958276	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41015563	41015563	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:41015563C>T	uc003jmj.3	-	29	3392	c.2902G>A	c.(2902-2904)GAA>AAA	p.E968K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E523K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	968	HEAT 10.						binding			ovary(6)|central_nervous_system(2)	8						TGCAGTCTTTCCACTTCCAAG	0.408													5	20					0	0	0.00116845	0	0
FGF10	2255	broad.mit.edu	37	5	44305163	44305163	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:44305163C>T	uc003jog.1	-	3	561	c.561G>A	c.(559-561)AGG>AGA	p.R187R		NM_004465	NP_004456	O15520	FGF10_HUMAN	fibroblast growth factor 10 precursor	187					actin cytoskeleton reorganization|activation of MAPK activity|bud outgrowth involved in lung branching|ERK1 and ERK2 cascade|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|insulin receptor signaling pathway|lacrimal gland development|lung saccule development|mesonephros development|negative regulation of cell cycle arrest|positive regulation of ATPase activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of DNA repair|positive regulation of DNA replication|positive regulation of epithelial cell migration|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of ERK1 and ERK2 cascade|positive regulation of hair follicle cell proliferation|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of lymphocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of urothelial cell proliferation|protein localization at cell surface|radial glial cell differentiation|regulation of saliva secretion|response to protein stimulus|secretion by lung epithelial cell involved in lung growth|tear secretion|thymus development|urothelial cell proliferation	cell surface|extracellular space|nucleus|plasma membrane	chemoattractant activity|growth factor activity|heparin binding|type 2 fibroblast growth factor receptor binding			lung(3)	3	Lung NSC(6;1.12e-06)					TCTGTCCTCTCCTTGGAGCTC	0.433													8	61					0	0	0.000274275	0	0
ISCA1P1	389293	broad.mit.edu	37	5	62072833	62072833	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:62072833G>A	uc003jtf.2	-	1	338	c.258C>T	c.(256-258)ATC>ATT	p.I86I		NM_001080540	NP_001074009			iron-sulfur cluster assembly 1 homolog (S.												0						CTTTCTTTTCGATGAATACTC	0.368													9	142					0	0	0.000442599	0	0
RGNEF	64283	broad.mit.edu	37	5	73136490	73136490	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:73136490C>T	uc011csq.1	+	10	1343	c.1332C>T	c.(1330-1332)TCC>TCT	p.S444S	RGNEF_uc003kcx.2_Silent_p.S444S|RGNEF_uc003kcy.1_Silent_p.S444S|RGNEF_uc010izf.2_Silent_p.S444S|RGNEF_uc011csr.1_Silent_p.S131S	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	444					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		CCCAGCAGTCCTTCATGTCAC	0.448													3	11					0	0	6.4e-05	0	0
APC	324	broad.mit.edu	37	5	112174857	112174857	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:112174857C>T	uc010jby.2	+	16	3946	c.3566C>T	c.(3565-3567)TCA>TTA	p.S1189L	APC_uc011cvt.1_Missense_Mutation_p.S1171L|APC_uc003kpz.3_Missense_Mutation_p.S1189L|APC_uc003kpy.3_Missense_Mutation_p.S1189L|APC_uc010jbz.2_Missense_Mutation_p.S906L|APC_uc010jca.2_Missense_Mutation_p.S489L	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1189	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.S1189*(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GATATTCCTTCATCACAGAAA	0.353		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			7	51					0	0	0.00198382	0	0
FTMT	94033	broad.mit.edu	37	5	121187820	121187820	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:121187820C>T	uc003kss.2	+	1	171	c.162C>T	c.(160-162)TCC>TCT	p.S54S		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	54					cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CAGCCGCCTCCTCCCGGGACC	0.766													3	11					0	0	6.4e-05	0	0
ZNF608	57507	broad.mit.edu	37	5	123983748	123983748	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:123983748G>A	uc003ktq.1	-	4	2452	c.2329C>T	c.(2329-2331)CAG>TAG	p.Q777*	ZNF608_uc003ktr.1_Intron|ZNF608_uc003kts.1_Nonsense_Mutation_p.Q777*|ZNF608_uc003ktt.1_Nonsense_Mutation_p.Q777*	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	777						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		GGTGTAGCCTGAACAACAGTT	0.532													6	52					0	0	0.00307968	0	0
CDKL3	51265	broad.mit.edu	37	5	133634401	133634401	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:133634401C>T	uc003kzf.3	-	13	1839	c.1720G>A	c.(1720-1722)GGT>AGT	p.G574S	CDKL3_uc011cxm.1_Intron|CDKL3_uc011cxn.1_Intron|CDKL3_uc010jdw.2_Intron|CDKL3_uc011cxo.1_Intron|CDKL3_uc011cxp.1_Intron|CDKL3_uc011cxq.1_3'UTR	NM_001113575	NP_001107047	Q8IVW4	CDKL3_HUMAN	cyclin-dependent kinase-like 3 isoform 1	574						cytoplasm	ATP binding|cyclin-dependent protein kinase activity			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCATCTCCACCCTAAAATTAG	0.333													7	76					0	0	0.00307968	0	0
HARS2	23438	broad.mit.edu	37	5	140076573	140076574	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140076573_140076574CC>TT	uc003lgx.2	+	9	1088_1089	c.872_873CC>TT	c.(871-873)TCC>TTT	p.S291F	HARS2_uc011czr.1_Missense_Mutation_p.S266F|HARS2_uc011czs.1_Missense_Mutation_p.S147F|HARS2_uc011czt.1_Missense_Mutation_p.S119F|HARS2_uc011czu.1_Missense_Mutation_p.S117F	NM_012208	NP_036340	P49590	SYHM_HUMAN	histidyl-tRNA synthetase 2 precursor	291					histidyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|histidine-tRNA ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCAGACTATCCCAGAACAAGC	0.431													11	116					0	0	6.4e-05	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175159	140175159	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140175159G>A	uc003lhd.2	+	1	716	c.610G>A	c.(610-612)GAA>AAA	p.E204K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E204K|PCDHA2_uc011czy.1_Missense_Mutation_p.E204K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	204	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACAGAGAGGAAACTGCTGA	0.443													10	72					0	0	0.000673444	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176128	140176128	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140176128G>A	uc003lhd.2	+	1	1685	c.1579G>A	c.(1579-1581)GAA>AAA	p.E527K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E527K|PCDHA2_uc011czy.1_Missense_Mutation_p.E527K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	527	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCACGAGGAAGTGGAGCT	0.687													5	57					0	0	0.000602214	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187688	140187688	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140187688G>A	uc003lhi.2	+	1	1017	c.916G>A	c.(916-918)GGA>AGA	p.G306R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.G306R|PCDHA4_uc011daa.1_Missense_Mutation_p.G306R	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	306	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATTGTAAAGGGATATATTGA	0.348													6	79					0	0	0.00198382	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188523	140188523	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140188523C>T	uc003lhi.2	+	1	1852	c.1751C>T	c.(1750-1752)TCG>TTG	p.S584L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.S584L|PCDHA4_uc011daa.1_Missense_Mutation_p.S584L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	584	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGCCATGGTCGGTGGGTGTG	0.672													6	58					0	0	0.00307968	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209354	140209354	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140209354G>A	uc003lho.2	+	1	1705	c.1678G>A	c.(1678-1680)GAC>AAC	p.D560N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Missense_Mutation_p.D560N	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	560	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACGAGAACGACAACGCGCC	0.687													9	49					0	0	0.000274275	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476511	140476511	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140476511G>A	uc003lil.2	+	1	2275	c.2137G>A	c.(2137-2139)GTG>ATG	p.V713M	PCDHB2_uc003lim.1_Missense_Mutation_p.V374M	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	713	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTCGTGGCGGTGCGGCTGTG	0.697													7	45					0	0	0.000274275	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502556	140502556	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140502556C>T	uc003lip.1	+	1	976	c.976C>T	c.(976-978)CTT>TTT	p.L326F		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	326	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGAGGAGGCCTTTCTGGAAA	0.398													8	182					0	0	0.000274275	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515816	140515816	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140515816G>A	uc003liq.2	+	1	1017	c.800G>A	c.(799-801)CGA>CAA	p.R267Q		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	267	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTCTCCGCTCGAGATTTAGAT	0.438													13	96					0	0	0.00185496	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563277	140563277	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140563277G>A	uc003liv.2	+	1	2298	c.1143G>A	c.(1141-1143)ACG>ACA	p.T381T	PCDHB16_uc010jfw.1_Silent_p.T53T	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	381	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATGGGAAGACGATTTCCTCCA	0.488													5	41					0	0	0.000602214	0	0
PCDHB14	56122	broad.mit.edu	37	5	140604005	140604005	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140604005G>A	uc003ljb.2	+	1	928	c.928G>A	c.(928-930)GAA>AAA	p.E310K	PCDHB14_uc011dal.1_Missense_Mutation_p.E157K	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	310	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGGATTTTGAAGTAATACA	0.343													9	56					0	0	0.000442599	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712498	140712498	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:140712498C>T	uc003lji.1	+	1	2247	c.2247C>T	c.(2245-2247)TTC>TTT	p.F749F	PCDHGA1_uc011dan.1_Silent_p.F749F	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	749	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCGGGCTTTCCTGCAGACCT	0.627													5	42					0	0	0.000602214	0	0
HDAC3	8841	broad.mit.edu	37	5	141014470	141014470	+	Silent	SNP	G	A	A	rs141667982	byFrequency	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:141014470G>A	uc003llf.2	-	3	255	c.189C>T	c.(187-189)TCC>TCT	p.S63S	HDAC3_uc003lle.1_Silent_p.S6S|HDAC3_uc010jgd.1_Intron|HDAC3_uc010jge.1_Intron|RELL2_uc003lli.2_5'Flank|RELL2_uc003llh.2_5'Flank|RELL2_uc003llg.2_5'Flank|RELL2_uc010jgf.2_5'Flank	NM_003883	NP_003874	O15379	HDAC3_HUMAN	histone deacetylase 3	63	Histone deacetylase.				anti-apoptosis|cellular lipid metabolic process|negative regulation of cell cycle|negative regulation of JNK cascade|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|spindle assembly|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|spindle microtubule|transcriptional repressor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription corepressor activity|transcription factor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Vorinostat(DB02546)	TGTAGTCCTCGGAGTGGAAGC	0.552													6	50					0	0	0.00116845	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159776679	159776679	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:159776679C>T	uc003lyd.2	-	3	493	c.489G>A	c.(487-489)GGG>GGA	p.G163G		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	118	Collagen-like.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGCCATGCTTCCCGGGGGTAC	0.682													7	41					0	0	0.00198382	0	0
SLIT3	6586	broad.mit.edu	37	5	168201324	168201324	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:168201324T>C	uc003mab.2	-	13	1631	c.1211A>G	c.(1210-1212)AAC>AGC	p.N404S	SLIT3_uc010jjg.2_Missense_Mutation_p.N404S|SLIT3_uc010jji.2_Missense_Mutation_p.N404S|SLIT3_uc003mac.1_Missense_Mutation_p.N201S	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	404	LRR 11.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAAGTTGAGGTTCTGCAGGTC	0.532													10	107					0	0	0.000673444	0	0
FOXI1	2299	broad.mit.edu	37	5	169535226	169535226	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:169535226G>A	uc003mai.3	+	2	793	c.748G>A	c.(748-750)GAC>AAC	p.D250N	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	250					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGAGCCTCAGGACATCTTGGA	0.597									Pendred_syndrome				4	45					0	0	0.00116845	0	0
CDHR2	54825	broad.mit.edu	37	5	176016402	176016402	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:176016402C>T	uc003mem.1	+	23	3146	c.3080C>T	c.(3079-3081)TCC>TTC	p.S1027F	CDHR2_uc003men.1_Missense_Mutation_p.S1027F	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	1027	Extracellular (Potential).|Cadherin 9.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GACAGACCTTCCTTGGGTCCT	0.662													6	39					0	0	0.00307968	0	0
CANX	821	broad.mit.edu	37	5	179150759	179150759	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr5:179150759C>T	uc003mkk.2	+	12	1674	c.1497C>T	c.(1495-1497)ATC>ATT	p.I499I	CANX_uc011dgp.1_Silent_p.I534I|CANX_uc003mkl.2_Silent_p.I499I|CANX_uc011dgq.1_Silent_p.I391I	NM_001746	NP_001737	P27824	CALX_HUMAN	calnexin precursor	499	Helical; (Potential).				post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein secretion	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane|melanosome	calcium ion binding|sugar binding|unfolded protein binding				0	all_cancers(89;0.000129)|all_epithelial(37;5.59e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0413)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCTGGTTATCCTCTTCTGCT	0.428													4	46					0	0	0.00024832	0	0
BPHL	670	broad.mit.edu	37	6	3140660	3140660	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:3140660C>T	uc003mva.2	+	6	754	c.705C>T	c.(703-705)CCC>CCT	p.P235P	BPHL_uc003muz.2_RNA|BPHL_uc011dht.1_RNA|BPHL_uc003muy.2_Silent_p.P218P	NM_004332	NP_004323	Q86WA6	BPHL_HUMAN	biphenyl hydrolase-like precursor	235					cellular amino acid metabolic process|response to toxin	mitochondrion	hydrolase activity				0	Ovarian(93;0.0386)	all_hematologic(90;0.108)				TCCAGTGCCCCGCCTTGATTG	0.567													5	78					0	0	0.000602214	0	0
PRPF4B	8899	broad.mit.edu	37	6	4032432	4032432	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:4032432C>T	uc003mvv.2	+	2	772	c.681C>T	c.(679-681)TCC>TCT	p.S227S	PRPF4B_uc011dhv.1_RNA	NM_003913	NP_003904	Q13523	PRP4B_HUMAN	serine/threonine-protein kinase PRP4K	227	Arg/Lys-rich (basic).					catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity			breast(5)	5	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				AAAGCCCATCCAAAAGAAGTA	0.388													11	131					0	0	0.00185496	0	0
Unknown	0	broad.mit.edu	37	6	9908750	9908750	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:9908750C>T	uc003myg.1	-	3		c.331_splice	c.e3+1		uc010jog.1_Splice_Site_p.G90_splice|uc003myh.1_Splice_Site_p.V115_splice|uc003myi.2_Intron|uc003myj.1_Splice_Site_p.G115_splice|uc003myk.1_Splice_Site|uc003myn.2_Splice_Site_p.D115_splice|uc010joi.1_Splice_Site_p.D183_splice|uc010joh.1_Splice_Site|uc011dif.1_Splice_Site_p.D119_splice|uc011dig.1_Splice_Site_p.D115_splice					Homo sapiens clone 958LR MRDS1 protein (MRDS1) mRNA, complete cds.																		TTCTAGCTCACCTTCTCTGCT	0.393													6	60					0	0	0.00307968	0	0
SYCP2L	221711	broad.mit.edu	37	6	10926589	10926589	+	Silent	SNP	G	A	A	rs147164289		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:10926589G>A	uc003mzo.2	+	16	1532	c.1236G>A	c.(1234-1236)ACG>ACA	p.T412T	SYCP2L_uc011din.1_Silent_p.T253T|SYCP2L_uc010jow.2_Silent_p.T32T	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	412						nucleus		p.T412T(1)		ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			CTGACCAGACGAAAATCTCCT	0.348													12	112					0	0	0.00244969	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24515416	24515416	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:24515416C>T	uc003neg.2	+	5	776	c.748C>T	c.(748-750)CCT>TCT	p.P250S	ALDH5A1_uc003nef.2_Missense_Mutation_p.P263S	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	250					acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	GGCTGGGATTCCTTCAGGTGT	0.353													6	74					0	0	0.00307968	0	0
SCGN	10590	broad.mit.edu	37	6	25670232	25670232	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:25670232C>T	uc003nfb.2	+	6	602	c.399C>T	c.(397-399)TTC>TTT	p.F133F	SCGN_uc010jpz.2_Missense_Mutation_p.S43F	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	133	EF-hand 3.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						CACAGAACTTCCTCCGAGACC	0.373													6	157					0	0	0.00198382	0	0
SLC17A1	6568	broad.mit.edu	37	6	25819986	25819986	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:25819986C>T	uc003nfh.3	-	4	481	c.365G>A	c.(364-366)AGC>AAC	p.S122N	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.S120N|SLC17A1_uc010jqc.1_Missense_Mutation_p.S120N	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	122	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						GATGAGCAGGCTTAACACAGA	0.433													4	35					0	0	0.00024832	0	0
TRIM31	11074	broad.mit.edu	37	6	30075913	30075913	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:30075913G>A	uc003npg.1	-	6	910	c.800C>T	c.(799-801)CCT>CTT	p.P267L	TRIM31_uc003npi.3_RNA	NM_007028	NP_008959	Q9BZY9	TRI31_HUMAN	tripartite motif protein 31	267						mitochondrion	ligase activity|zinc ion binding			lung(1)	1						CAGAGGAACAGGGGTTGGGTT	0.458													4	36					0	0	0.00024832	0	0
ABCF1	23	broad.mit.edu	37	6	30551480	30551480	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:30551480C>T	uc003nql.2	+	11	1106	c.1011C>T	c.(1009-1011)CCC>CCT	p.P337P	ABCF1_uc003nqk.2_Silent_p.P338P|ABCF1_uc003nqm.2_Silent_p.P299P|ABCF1_uc010jsb.2_Intron|MIR877_hsa-mir-877|MI0005561_5'Flank	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	337	ATP 1 (By similarity).|ABC transporter 1.				inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						TGGTAGGACCCAATGGGTGAG	0.547													5	30					0	0	0.000602214	0	0
LTA	4049	broad.mit.edu	37	6	31541101	31541101	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:31541101G>A	uc011dnu.1	+	4	462	c.249G>A	c.(247-249)ACG>ACA	p.T83T	LTA_uc003nue.1_Silent_p.T83T|LTA_uc003nuf.2_Intron|LTA_uc003nuh.2_Silent_p.T30T|LTA_uc003nug.2_Silent_p.T30T|LTA_uc010jsr.2_Intron|TNF_uc003nui.2_5'Flank	NM_001159740	NP_001153212	P01374	TNFB_HUMAN	lymphotoxin alpha precursor	83					cell-cell signaling|induction of apoptosis|signal transduction	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0					Etanercept(DB00005)	GAGCAAACACGGACCGTGCCT	0.567													6	29					0	0	0.00116845	0	0
EHMT2	10919	broad.mit.edu	37	6	31851634	31851634	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:31851634C>T	uc003nxz.1	-	22	2875	c.2865G>A	c.(2863-2865)GAG>GAA	p.E955E	EHMT2_uc003nxv.1_5'UTR|EHMT2_uc003nxw.1_5'UTR|EHMT2_uc003nxx.1_Silent_p.E153E|EHMT2_uc003nxy.1_Silent_p.E753E|EHMT2_uc011don.1_Silent_p.E978E|EHMT2_uc003nya.1_Silent_p.E921E	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	955					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						TCTCGCAGTTCTCTGAGATGT	0.567													22	208					0	0	0.000720815	0	0
CFB	629	broad.mit.edu	37	6	31905101	31905101	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:31905101G>A	uc011dor.1	+	5	799	c.535G>A	c.(535-537)GAA>AAA	p.E179K	C2_uc003nyc.2_Missense_Mutation_p.E119K|C2_uc011doo.1_Missense_Mutation_p.E86K|C2_uc011dop.1_Missense_Mutation_p.E118K|C2_uc003nyf.2_Missense_Mutation_p.E332K|C2_uc010jtk.2_Missense_Mutation_p.E200K|C2_uc011doq.1_Missense_Mutation_p.E303K|C2_uc003nyg.2_Missense_Mutation_p.E109K|C2_uc003nyh.1_5'UTR	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TCCAGATCATGAAAATGGAAC	0.463													11	148					0	0	0.00136819	0	0
C2	717	broad.mit.edu	37	6	31912779	31912779	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:31912779C>T	uc003nyf.2	+	17	2316	c.2052C>T	c.(2050-2052)TTC>TTT	p.F684F	C2_uc011doo.1_Silent_p.F438F|C2_uc011dop.1_Silent_p.F470F|C2_uc010jtk.2_Silent_p.F552F|C2_uc011doq.1_Silent_p.F655F|C2_uc003nyg.2_Silent_p.F461F|CFB_uc011dor.1_Intron|C2_uc003nyh.1_Intron|CFB_uc011dos.1_5'Flank|CFB_uc003nyi.2_5'Flank|CFB_uc003nyj.3_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	684	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		GAGCAGTTTTCCTTGAGCGGA	0.552													19	188					0	0	0.00121646	0	0
TNXB	7148	broad.mit.edu	37	6	32039861	32039861	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:32039861G>A	uc003nzl.2	-	13	5098	c.4896C>T	c.(4894-4896)ATC>ATT	p.I1632I		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1714	Fibronectin type-III 9.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCAGGTCAGGGATAGTGACCT	0.592													11	94					0	0	0.000673444	0	0
TNXB	7148	broad.mit.edu	37	6	32065621	32065621	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:32065621C>T	uc003nzl.2	-	2	557	c.355G>A	c.(355-357)GAA>AAA	p.E119K	TNXB_uc010jts.1_Missense_Mutation_p.E118K|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	119					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTGCACTGTTCCTTGAGCCCC	0.597													6	105					0	0	0.00116845	0	0
DAXX	1616	broad.mit.edu	37	6	33289292	33289292	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:33289292A>T	uc003oec.2	-	3	464	c.260T>A	c.(259-261)TTC>TAC	p.F87Y	DAXX_uc011drd.1_Missense_Mutation_p.F12Y|DAXX_uc011dre.1_Missense_Mutation_p.F99Y|DAXX_uc003oed.2_Missense_Mutation_p.F87Y|DAXX_uc010juw.2_Missense_Mutation_p.F12Y	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	87	Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						GTTATAGAGGAATGGGACCAC	0.468			Mis|F|N		Pancreatic neuroendocrine tumors								6	58					0	0	0.00198382	0	0
KIFC1	3833	broad.mit.edu	37	6	33374381	33374381	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:33374381C>T	uc003oef.3	+	9	2290	c.1840C>T	c.(1840-1842)CCT>TCT	p.P614S	KIFC1_uc011drf.1_Missense_Mutation_p.P606S	NM_002263	NP_002254	Q9BW19	KIFC1_HUMAN	kinesin family member C1	614					blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity				0						GTCCCACGTGCCTTACCGGAA	0.542													5	30					0	0	0.00116845	0	0
TMEM217	221468	broad.mit.edu	37	6	37186316	37186316	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:37186316G>A	uc003onl.2	-	2	572	c.491C>T	c.(490-492)TCC>TTC	p.S164F	TMEM217_uc010jwr.2_Missense_Mutation_p.S164F|TMEM217_uc010jws.2_Intron|TMEM217_uc003onm.3_Missense_Mutation_p.S164F	NM_145316	NP_660359	Q8N7C4	TM217_HUMAN	transmembrane protein 217 isoform 1	164						integral to membrane					0						TCTCTTGTAGGAAATTATATT	0.348													14	88					0	0	0.00185496	0	0
DNAH8	1769	broad.mit.edu	37	6	38718261	38718261	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:38718261G>A	uc003ooe.1	+	7	1252	c.652G>A	c.(652-654)GAT>AAT	p.D218N		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GAATTGGCGTGATTTGGATGC	0.328													5	29					0	0	0.00116845	0	0
KLC4	89953	broad.mit.edu	37	6	43034129	43034129	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:43034129C>T	uc003otv.1	+	5	734	c.657C>T	c.(655-657)ATC>ATT	p.I219I	KLC4_uc003otr.1_RNA|KLC4_uc011dvd.1_Silent_p.I142I|KLC4_uc003otu.2_Silent_p.I219I|KLC4_uc003otw.1_Silent_p.I237I|KLC4_uc003otx.1_Silent_p.I219I|KLC4_uc003oty.1_Silent_p.I219I|KLC4_uc003otz.1_Silent_p.I219I	NM_201521	NP_958929	Q9NSK0	KLC4_HUMAN	kinesin-like 8 isoform a	219	TPR 2.					cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			skin(3)|ovary(1)	4			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			ACCTGGTGATCCAGTACGCAG	0.587													5	36					0	0	0.000602214	0	0
CUL9	23113	broad.mit.edu	37	6	43172271	43172271	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:43172271C>T	uc003ouk.2	+	21	4408	c.4333C>T	c.(4333-4335)CGG>TGG	p.R1445W	CUL9_uc003oul.2_Missense_Mutation_p.R1445W|CUL9_uc010jyk.2_Missense_Mutation_p.R597W	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	1445					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						GCCATCCACTCGGCCCTGTAA	0.592													6	56					0	0	0.00116845	0	0
SLC22A7	10864	broad.mit.edu	37	6	43267408	43267408	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:43267408C>T	uc003out.2	+	4	646	c.547C>T	c.(547-549)CTG>TTG	p.L183L	SLC22A7_uc010jyl.1_Silent_p.L181L|SLC22A7_uc003ous.2_Silent_p.L181L	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	183	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			CGTGAGTACCCTGGTGCTGGG	0.582													7	81					0	0	0.000673444	0	0
CD2AP	23607	broad.mit.edu	37	6	47575686	47575686	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:47575686C>T	uc003oyw.2	+	15	2010	c.1554C>T	c.(1552-1554)ATC>ATT	p.I518I		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	518					cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			CCGAAAAAATCTTGAAGTTAC	0.368													5	64					0	0	0.00116845	0	0
GPR111	222611	broad.mit.edu	37	6	47649528	47649528	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:47649528G>A	uc010jzj.1	+	6	1234	c.1233G>A	c.(1231-1233)ATG>ATA	p.M411I	GPR111_uc010jzk.1_Missense_Mutation_p.M343I|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	411	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CCTGCAAAATGATTCAAGAAA	0.448													8	57					0	0	0.00307968	0	0
GPR111	222611	broad.mit.edu	37	6	47649845	47649845	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:47649845G>A	uc010jzj.1	+	6	1551	c.1550G>A	c.(1549-1551)GGA>GAA	p.G517E	GPR111_uc010jzk.1_Missense_Mutation_p.G449E|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	517	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CACCACAAGGGATGTGTGGCA	0.433													4	26					0	0	0.00024832	0	0
GPR111	222611	broad.mit.edu	37	6	47649918	47649918	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:47649918C>T	uc010jzj.1	+	6	1624	c.1623C>T	c.(1621-1623)CTC>CTT	p.L541L	GPR111_uc010jzk.1_Silent_p.L473L|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	541	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CCAAGGCACTCCTTATCCTCT	0.448													7	33					0	0	0.00198382	0	0
GPR115	221393	broad.mit.edu	37	6	47682245	47682245	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:47682245A>T	uc003oza.1	+	6	1522	c.1264A>T	c.(1264-1266)ATT>TTT	p.I422F	GPR115_uc003oyz.1_Missense_Mutation_p.I479F|GPR115_uc003ozb.1_Missense_Mutation_p.I420F	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	422	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						TTGCCTGATCATTGAAGCCAC	0.493													4	66					0	0	0.000602214	0	0
TFAP2D	83741	broad.mit.edu	37	6	50682961	50682961	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:50682961C>T	uc003paf.2	+	2	684	c.172C>T	c.(172-174)CCC>TCC	p.P58S	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	58							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					GTTTGCGTCCCCCTACTTCTC	0.582													5	59					0	0	0.00116845	0	0
ICK	22858	broad.mit.edu	37	6	52876895	52876895	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:52876895G>A	uc003pbh.2	-	11	1773	c.1283C>T	c.(1282-1284)CCA>CTA	p.P428L	ICK_uc003pbi.2_Missense_Mutation_p.P428L	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	428					intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					GCTGAGGGATGGACTGAAATC	0.453													4	39					0	0	0.000602214	0	0
DST	667	broad.mit.edu	37	6	56458572	56458572	+	Silent	SNP	G	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:56458572G>T	uc003pdf.2	-	42	6286	c.6258C>A	c.(6256-6258)GCC>GCA	p.A2086A	DST_uc003pcz.3_Silent_p.A1908A|DST_uc011dxj.1_Silent_p.A1937A|DST_uc011dxk.1_Silent_p.A1948A|DST_uc003pcy.3_Silent_p.A1582A|DST_uc010kaa.1_RNA	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	3994	Spectrin 2.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TGCAAGATTTGGCAGCTTCCA	0.458													9	141					0.000442599	0.00100024	0.000442599	1	0
FILIP1	27145	broad.mit.edu	37	6	76063340	76063340	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:76063340C>T	uc003pia.2	-	4	917	c.544G>A	c.(544-546)GAG>AAG	p.E182K	FILIP1_uc003phy.1_Missense_Mutation_p.E182K|FILIP1_uc003phz.2_Missense_Mutation_p.E83K|FILIP1_uc010kbe.2_Missense_Mutation_p.E185K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	182										skin(3)|ovary(1)	4						TTCTCTAACTCGTATACGGTG	0.507													6	63					0	0	0.00307968	0	0
HTR1E	3354	broad.mit.edu	37	6	87725541	87725541	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:87725541C>T	uc003pli.2	+	2	1192	c.489C>T	c.(487-489)CAC>CAT	p.H163H		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	163	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	GGAGAAGCCACCGCCGCCTAA	0.562													5	38					0	0	0.00116845	0	0
ASCC3	10973	broad.mit.edu	37	6	100957956	100957956	+	Missense_Mutation	SNP	G	A	A	rs141591240		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:100957956G>A	uc003pqk.2	-	41	6642	c.6313C>T	c.(6313-6315)CCT>TCT	p.P2105S		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	2105	SEC63 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		GGAAATCGAGGAGTAACTGCA	0.363													12	158					0	0	0.00244969	0	0
GRIK2	2898	broad.mit.edu	37	6	102307216	102307216	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:102307216C>T	uc003pqp.3	+	10	1621	c.1372C>T	c.(1372-1374)CGA>TGA	p.R458*	GRIK2_uc003pqn.2_Nonsense_Mutation_p.R458*|GRIK2_uc003pqo.3_Nonsense_Mutation_p.R458*|GRIK2_uc010kcw.2_Nonsense_Mutation_p.R458*	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	458	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	TGGTAATGATCGATTTGAAGG	0.363													8	39					0	0	0.000274275	0	0
AIM1	202	broad.mit.edu	37	6	106969274	106969274	+	Silent	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:106969274A>C	uc003prh.2	+	2	3454	c.2967A>C	c.(2965-2967)TCA>TCC	p.S989S		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	989							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		TTTTCAAATCAAGCCGGTATG	0.343													3	39					0	0	6.4e-05	0	0
SLC22A16	85413	broad.mit.edu	37	6	110777904	110777904	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:110777904G>A	uc003puf.2	-	2	437	c.370C>T	c.(370-372)CCT>TCT	p.P124S	SLC22A16_uc003pue.2_Missense_Mutation_p.P105S|SLC22A16_uc003pug.2_Missense_Mutation_p.P124S	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	124					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		TCCACACAAGGAAACTCTTTC	0.478													7	48					0	0	0.00198382	0	0
SLC35F1	222553	broad.mit.edu	37	6	118556686	118556686	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:118556686C>T	uc003pxx.3	+	3	565	c.364C>T	c.(364-366)CTG>TTG	p.L122L		NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	122					transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		AGAAAACCTCCTGGCAATTTT	0.368													5	43					0	0	0.00116845	0	0
PTPRK	5796	broad.mit.edu	37	6	128643452	128643452	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:128643452G>A	uc003qbk.2	-	3	594	c.227C>T	c.(226-228)TCC>TTC	p.S76F	PTPRK_uc003qbj.2_Missense_Mutation_p.S76F|PTPRK_uc010kfc.2_Missense_Mutation_p.S76F|PTPRK_uc011ebu.1_Missense_Mutation_p.S76F|PTPRK_uc003qbl.1_Intron|PTPRK_uc011ebv.1_Missense_Mutation_p.S76F|PTPRK_uc003qbm.3_Missense_Mutation_p.S5F	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	76	Extracellular (Potential).|MAM.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TATCATATAGGAACCTGAAAT	0.353													6	51					0	0	0.00198382	0	0
LAMA2	3908	broad.mit.edu	37	6	129634166	129634166	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:129634166G>A	uc003qbn.2	+	23	3440	c.3335G>A	c.(3334-3336)GGG>GAG	p.G1112E	LAMA2_uc003qbo.2_Missense_Mutation_p.G1112E	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1112	Laminin EGF-like 13.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TTCCTCCCTGGGACAGATGCC	0.483													4	42					0	0	0.00024832	0	0
LAMA2	3908	broad.mit.edu	37	6	129636653	129636653	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:129636653C>T	uc003qbn.2	+	25	3693	c.3588C>T	c.(3586-3588)CCC>CCT	p.P1196P	LAMA2_uc003qbo.2_Silent_p.P1196P	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1196	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CCATTCTACCCCTGGTAGATG	0.463													5	28					0	0	0.00116845	0	0
EPB41L2	2037	broad.mit.edu	37	6	131199319	131199319	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:131199319C>T	uc003qch.2	-	14	2150	c.1968G>A	c.(1966-1968)ATG>ATA	p.M656I	EPB41L2_uc003qce.1_Missense_Mutation_p.M34I|EPB41L2_uc003qcf.1_RNA|EPB41L2_uc003qcg.1_Intron|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Intron|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc010kfl.1_Intron|EPB41L2_uc003qcj.1_Missense_Mutation_p.M1I	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	656	Spectrin--actin-binding.				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		GTGTGGATTCCATAAAATTGC	0.468													4	20					0	0	0.00024832	0	0
MOXD1	26002	broad.mit.edu	37	6	132645130	132645130	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:132645130G>A	uc003qdf.2	-	7	1152	c.1053C>T	c.(1051-1053)ATC>ATT	p.I351I	MOXD1_uc003qde.2_Silent_p.I283I	NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	351	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		TCCCTGGAGGGATGGTATGGA	0.493													5	24					0	0	0.000602214	0	0
VNN1	8876	broad.mit.edu	37	6	133032891	133032891	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:133032891G>A	uc003qdo.2	-	2	318	c.298C>T	c.(298-300)CCA>TCA	p.P100S		NM_004666	NP_004657	O95497	VNN1_HUMAN	vanin 1 precursor	100	CN hydrolase.				acute inflammatory response|anti-apoptosis|cell-cell adhesion|cellular component movement|chronic inflammatory response|innate immune response|pantothenate metabolic process|positive regulation of T cell differentiation in thymus|response to oxidative stress	anchored to membrane|integral to membrane|plasma membrane	GPI anchor binding|pantetheine hydrolase activity			ovary(3)	3	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.0027)|GBM - Glioblastoma multiforme(226;0.0189)		TCAGGGTCTGGGATGTCCTCC	0.403													4	30					0	0	0.00024832	0	0
SLC2A12	154091	broad.mit.edu	37	6	134349572	134349572	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:134349572G>A	uc003qem.1	-	2	1562	c.1391C>T	c.(1390-1392)TCC>TTC	p.S464F		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	464	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		GCTGGCTAAGGACAGCCATTT	0.433													5	37					0	0	0.00198382	0	0
C6orf211	79624	broad.mit.edu	37	6	151789731	151789731	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:151789731C>T	uc003qok.1	+	5	1071	c.812C>T	c.(811-813)TCC>TTC	p.S271F	C6orf211_uc011ees.1_Missense_Mutation_p.S152F	NM_024573	NP_078849	Q9H993	CF211_HUMAN	hypothetical protein LOC79624	271							protein binding				0			BRCA - Breast invasive adenocarcinoma(37;0.183)	OV - Ovarian serous cystadenocarcinoma(155;5.27e-11)		TTCTTGTTGTCCTCTGAACTG	0.328													10	113					0	0	0.000442599	0	0
SYNE1	23345	broad.mit.edu	37	6	152737610	152737610	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:152737610C>T	uc010kiw.2	-	41	6564	c.5962G>A	c.(5962-5964)GAG>AAG	p.E1988K	SYNE1_uc003qot.3_Missense_Mutation_p.E1995K|SYNE1_uc003qou.3_Missense_Mutation_p.E1988K|SYNE1_uc010kjb.1_Missense_Mutation_p.E1971K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1988	Cytoplasmic (Potential).|Potential.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGAAGCTCCTCTTTCTGGTCT	0.473										HNSCC(10;0.0054)			12	150					0	0	0.00136819	0	0
ARID1B	57492	broad.mit.edu	37	6	157511258	157511258	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:157511258C>T	uc003qqn.2	+	15	3874	c.3722C>T	c.(3721-3723)CCC>CTC	p.P1241L	ARID1B_uc003qqo.2_Missense_Mutation_p.P1201L|ARID1B_uc003qqp.2_Missense_Mutation_p.P1188L	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1246					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CCAAACGCCCCCTACCAGCAG	0.537													7	52					0	0	0.00198382	0	0
ARID1B	57492	broad.mit.edu	37	6	157528921	157528921	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:157528921C>T	uc003qqn.2	+	20	6744	c.6592C>T	c.(6592-6594)CTT>TTT	p.L2198F	ARID1B_uc003qqo.2_Missense_Mutation_p.L2158F|ARID1B_uc003qqp.2_Missense_Mutation_p.L2145F	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	2203					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CTCGGAATTCCTTTTGCACGA	0.552													13	81					0	0	0.00136819	0	0
FNDC1	84624	broad.mit.edu	37	6	159653040	159653040	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:159653040G>A	uc010kjv.2	+	11	1696	c.1496G>A	c.(1495-1497)GGG>GAG	p.G499E	FNDC1_uc010kjw.1_Missense_Mutation_p.G384E	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	499						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TCTCCCCAAGGGAGAAATGCC	0.552													6	26					0	0	0.00198382	0	0
LPA	4018	broad.mit.edu	37	6	160998240	160998240	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:160998240C>T	uc003qtl.2	-	29	4679	c.4559G>A	c.(4558-4560)GGA>GAA	p.G1520E		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4028	Kringle 36.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ACAGGTCCTTCCTGTGACAGT	0.458													5	50					0	0	0.00116845	0	0
C6orf118	168090	broad.mit.edu	37	6	165715342	165715342	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:165715342C>T	uc003qum.3	-	2	505	c.469G>A	c.(469-471)GAA>AAA	p.E157K	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	157											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		TTCTTTTCTTCCTTCCCCTCT	0.612													6	36					0	0	0.00307968	0	0
RNASET2	8635	broad.mit.edu	37	6	167352439	167352439	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:167352439G>A	uc003qve.2	-	6	797	c.390C>T	c.(388-390)TCC>TCT	p.S130S	RNASET2_uc003qvh.2_Intron|RNASET2_uc003qvf.2_Silent_p.S38S|RNASET2_uc003qvg.2_Silent_p.S67S|RNASET2_uc003qvi.1_Missense_Mutation_p.P18L	NM_003730	NP_003721	O00584	RNT2_HUMAN	ribonuclease T2 precursor	130					RNA catabolic process	extracellular region	ribonuclease T2 activity|RNA binding				0		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;1.53e-19)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00665)		ACTTCTTCTGGGAGTTGAGCG	0.552													7	37					0	0	0.00198382	0	0
UNC93A	54346	broad.mit.edu	37	6	167709569	167709569	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr6:167709569C>T	uc003qvq.2	+	3	494	c.319C>T	c.(319-321)CTG>TTG	p.L107L	UNC93A_uc003qvr.2_Silent_p.L107L	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	107						integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		GGCCGCCCCGCTGTGGTCTGC	0.547													6	41					0	0	0.00198382	0	0
C7orf27	221927	broad.mit.edu	37	7	2577997	2577997	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:2577997G>A	uc003smi.2	-	14	2214	c.2172C>T	c.(2170-2172)CTC>CTT	p.L724L	C7orf27_uc003smh.3_Silent_p.L156L	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	724					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		CCCTCAGGAAGAGAAGGAGGT	0.637													10	38					0	0	0.000978159	0	0
CARD11	84433	broad.mit.edu	37	7	2962835	2962835	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:2962835G>A	uc003smv.2	-	16	2477	c.2073C>T	c.(2071-2073)TTC>TTT	p.F691F		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	691	PDZ.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CCGAGTGCACGAAGCTCCCTC	0.701			Mis		DLBCL								5	33					0	0	0.00116845	0	0
SDK1	221935	broad.mit.edu	37	7	4152949	4152949	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:4152949G>A	uc003smx.2	+	24	3602	c.3463G>A	c.(3463-3465)GGG>AGG	p.G1155R	SDK1_uc010kso.2_Missense_Mutation_p.G431R	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1155	Fibronectin type-III 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GAACATTGTTGGGCCGAGCCC	0.542													14	125					0	0	0.00185496	0	0
SDK1	221935	broad.mit.edu	37	7	4218208	4218208	+	Silent	SNP	C	T	T	rs145808805		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:4218208C>T	uc003smx.2	+	35	5227	c.5088C>T	c.(5086-5088)GTC>GTT	p.V1696V	SDK1_uc010kso.2_Silent_p.V952V|SDK1_uc003smy.2_Silent_p.V183V	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1696					cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		AGGTCTTTGTCGGCGAGGCTG	0.617													10	39					0	0	0.000673444	0	0
RAC1	5879	broad.mit.edu	37	7	6426892	6426892	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:6426892C>T	uc003spx.2	+	2	326	c.85C>T	c.(85-87)CCT>TCT	p.P29S	RAC1_uc003spw.2_Missense_Mutation_p.P29S	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	29					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	CAATGCATTTCCTGGAGAATA	0.353													11	71					0	0	0.00136819	0	0
DGKB	1607	broad.mit.edu	37	7	14378223	14378223	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:14378223C>T	uc003ssz.2	-	22	2229	c.2042G>A	c.(2041-2043)CGA>CAA	p.R681Q	DGKB_uc011jxt.1_Missense_Mutation_p.R662Q|DGKB_uc003sta.2_Missense_Mutation_p.R681Q|DGKB_uc011jxu.1_Missense_Mutation_p.R680Q	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	681					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TCGATGGCTTCGTCTTTTCTT	0.398													5	36					0	0	0.000602214	0	0
DNAH11	8701	broad.mit.edu	37	7	21727062	21727062	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:21727062C>T	uc003svc.2	+	35	5893	c.5862C>T	c.(5860-5862)TTC>TTT	p.F1954F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1954	AAA 1 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTGATGAGTTCAACCGAATCT	0.448									Kartagener_syndrome				6	17					0	0	0.00116845	0	0
C7orf46	340277	broad.mit.edu	37	7	23740447	23740447	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:23740447A>C	uc003swo.3	+	6	877	c.788A>C	c.(787-789)GAG>GCG	p.E263A	C7orf46_uc003swq.3_Missense_Mutation_p.E227A|C7orf46_uc003swr.3_Missense_Mutation_p.E169A|C7orf46_uc003swp.3_RNA|C7orf46_uc010kup.2_RNA	NM_199136	NP_954587	A4D161	CG046_HUMAN	hypothetical protein LOC340277 isoform 1	263											0						AGACCTGAAGAGGATGATATG	0.308													22	181					0	0	0.00106085	0	0
HOXA5	3202	broad.mit.edu	37	7	27182905	27182905	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:27182905G>A	uc003syn.1	-	1	383	c.322C>T	c.(322-324)CCC>TCC	p.P108S		NM_019102	NP_061975	P20719	HXA5_HUMAN	homeobox A5	108					negative regulation of angiogenesis|negative regulation of erythrocyte differentiation|positive regulation of apoptosis|positive regulation of myeloid cell differentiation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCGGGCGAGGGGGCCACGGCG	0.731													5	32					0	0	0.00116845	0	0
SCRN1	9805	broad.mit.edu	37	7	29963630	29963630	+	Silent	SNP	C	T	T	rs140280542		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:29963630C>T	uc010kvp.2	-	7	1392	c.1188G>A	c.(1186-1188)GCG>GCA	p.A396A	SCRN1_uc011jzy.1_Silent_p.A328A|SCRN1_uc003tak.2_Silent_p.A396A|SCRN1_uc011jzz.1_Silent_p.A396A|SCRN1_uc011kaa.1_Silent_p.A416A|SCRN1_uc011jzw.1_Silent_p.A263A|SCRN1_uc011jzx.1_Silent_p.A219A	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	396					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						CCCCCACTTCCGCAGGGTCCA	0.517													5	63					0	0	0.000602214	0	0
FAM188B	84182	broad.mit.edu	37	7	30891837	30891837	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:30891837C>T	uc003tbt.2	+	11	1630	c.1553C>T	c.(1552-1554)TCG>TTG	p.S518L	FAM188B_uc010kwe.2_Missense_Mutation_p.S489L|AQP1_uc011kac.1_5'Flank	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	518											0						TTTAGGGCTTCGAGAACACAG	0.463													5	35					0	0	0.00198382	0	0
PDE1C	5137	broad.mit.edu	37	7	31877507	31877507	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:31877507C>T	uc003tcm.1	-	10	1528	c.1059G>A	c.(1057-1059)AAG>AAA	p.K353K	PDE1C_uc003tcn.1_Silent_p.K353K|PDE1C_uc003tco.1_Silent_p.K413K|PDE1C_uc003tcr.2_Silent_p.K353K|PDE1C_uc003tcs.2_Silent_p.K353K	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	353	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			GCAGAGCAGTCTTCATTGCTT	0.433													10	121					0	0	0.00136819	0	0
NPSR1	387129	broad.mit.edu	37	7	34851465	34851465	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:34851465C>T	uc003teg.1	+	4	596	c.468C>T	c.(466-468)TTC>TTT	p.F156F	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.F156F|NPSR1_uc010kwt.1_Silent_p.F3F|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Silent_p.F156F|NPSR1_uc010kww.1_Silent_p.F145F|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	156	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CCATGAAGTTCCTTCAAGGAG	0.443													6	50					0	0	0.00198382	0	0
NPSR1	387129	broad.mit.edu	37	7	34884511	34884511	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:34884511G>A	uc003teg.1	+	7	889	c.761G>A	c.(760-762)GGG>GAG	p.G254E	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.G254E|NPSR1_uc010kwt.1_Missense_Mutation_p.G101E|NPSR1_uc010kwu.1_Missense_Mutation_p.G44E|NPSR1_uc010kwv.1_Missense_Mutation_p.G188E|NPSR1_uc003tei.1_Missense_Mutation_p.G254E|NPSR1_uc010kww.1_Missense_Mutation_p.G243E|NPSR1_uc011kar.1_Missense_Mutation_p.G188E	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	254	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TCTACAGATGGGAAACTGTGC	0.408													9	28					0	0	0.000442599	0	0
EEPD1	80820	broad.mit.edu	37	7	36336730	36336730	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:36336730A>T	uc003tfa.2	+	7	2084	c.1444A>T	c.(1444-1446)AAC>TAC	p.N482Y		NM_030636	NP_085139	Q7L9B9	EEPD1_HUMAN	endonuclease/exonuclease/phosphatase family	482					DNA repair		DNA binding				0						CAGCACCAAGAACCCTCAAGG	0.483													5	31					0	0	0.00198382	0	0
C7orf10	79783	broad.mit.edu	37	7	40220591	40220591	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:40220591T>G	uc003thn.1	+	2	191	c.146T>G	c.(145-147)CTA>CGA	p.L49R	C7orf10_uc003thm.1_Missense_Mutation_p.L56R|C7orf10_uc003tho.1_Missense_Mutation_p.L49R	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	56							transferase activity			ovary(2)	2						ATTCTGGATCTAACAAGGTTT	0.284													15	189					0	0	0.000566183	0	0
GLI3	2737	broad.mit.edu	37	7	42004786	42004786	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:42004786G>C	uc011kbh.1	-	15	3976	c.3885C>G	c.(3883-3885)TTC>TTG	p.F1295L	GLI3_uc011kbg.1_Missense_Mutation_p.F1236L	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1295					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						CCGGCAGGCCGAAATTCAGCT	0.632									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				8	33					0	0	0.000274275	0	0
GCK	2645	broad.mit.edu	37	7	44189392	44189392	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:44189392C>T	uc003tkl.2	-	6	1116	c.646G>A	c.(646-648)GAA>AAA	p.E216K	GCK_uc003tkj.1_Missense_Mutation_p.E215K|GCK_uc003tkk.1_Missense_Mutation_p.E217K	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	216					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						TGATGGTCTTCGTAGTAGCAG	0.557													11	193					0	0	0.00185496	0	0
PKD1L1	168507	broad.mit.edu	37	7	47882731	47882731	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:47882731C>T	uc003tny.1	-	34	5274	c.5274G>A	c.(5272-5274)ATG>ATA	p.M1758I		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1758	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TCACAGAACCCATAATAAAAA	0.343													6	25					0	0	0.00307968	0	0
PKD1L1	168507	broad.mit.edu	37	7	47921604	47921604	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:47921604G>A	uc003tny.1	-	20	3345	c.3345C>T	c.(3343-3345)GAC>GAT	p.D1115D		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1115	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ACAGGGAGGGGTCCACCAGGT	0.567													8	32					0	0	0.00307968	0	0
ABCA13	154664	broad.mit.edu	37	7	48634305	48634305	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:48634305G>A	uc003toq.2	+	58	14666	c.14641_splice	c.e58-1	p.D4881_splice	ABCA13_uc010kys.1_Splice_Site_p.D1956_splice|ABCA13_uc010kyt.1_Splice_Site|ABCA13_uc010kyu.1_Splice_Site_p.D611_splice	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),						transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTTTCCTTCAGGATGAGCCCA	0.488													4	53					0	0	0.00024832	0	0
POM121L12	285877	broad.mit.edu	37	7	53103987	53103987	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:53103987G>A	uc003tpz.2	+	1	639	c.623G>A	c.(622-624)CGG>CAG	p.R208Q		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	208											0						GGTGGCAGGCGGAACCTGCAG	0.667													11	53					0	0	0.000978159	0	0
AUTS2	26053	broad.mit.edu	37	7	70246732	70246732	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:70246732C>T	uc003tvw.3	+	15	2879	c.2136C>T	c.(2134-2136)TTC>TTT	p.F712F	AUTS2_uc003tvx.3_Silent_p.F688F|AUTS2_uc011keg.1_Silent_p.F164F	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	712										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CAACTTTGTTCTCTGCCGCTG	0.552													7	43					0	0	0.00307968	0	0
CACNA2D1	781	broad.mit.edu	37	7	81667445	81667445	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:81667445C>T	uc003uhr.1	-	11	1242	c.986G>A	c.(985-987)GGA>GAA	p.G329E		NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	329	Extracellular (Potential).|VWFA.					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	atctgtaattcctttggctGT	0.294													9	61					0	0	0.000274275	0	0
PCLO	27445	broad.mit.edu	37	7	82579668	82579668	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:82579668C>T	uc003uhx.2	-	6	10525	c.10236G>A	c.(10234-10236)AAG>AAA	p.K3412K	PCLO_uc003uhv.2_Silent_p.K3412K|PCLO_uc010lec.2_Silent_p.K377K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3343					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGAACTTCTCTTTTTGGGTT	0.418													5	36					0	0	0.000602214	0	0
PCLO	27445	broad.mit.edu	37	7	82580151	82580151	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:82580151G>A	uc003uhx.2	-	6	10042	c.9753C>T	c.(9751-9753)ATC>ATT	p.I3251I	PCLO_uc003uhv.2_Silent_p.I3251I|PCLO_uc010lec.2_Silent_p.I216I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3182	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTGAACCATGATCTTTTCTT	0.468													12	60					0	0	0.000978159	0	0
GRM3	2913	broad.mit.edu	37	7	86468465	86468465	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:86468465C>T	uc003uid.2	+	4	2734	c.1635C>T	c.(1633-1635)ACC>ACT	p.T545T	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Silent_p.T417T|GRM3_uc010leh.2_Silent_p.T137T	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	545	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ATGAGTTTACCTGTATGGATT	0.527													10	32					0	0	0.000673444	0	0
GRM3	2913	broad.mit.edu	37	7	86468786	86468786	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:86468786C>T	uc003uid.2	+	4	3055	c.1956C>T	c.(1954-1956)TTC>TTT	p.F652F	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Silent_p.F524F|GRM3_uc010leh.2_Silent_p.F244F	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	652	Helical; Name=3; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GGAGTTCCTTCGCTATCTGTT	0.532													12	59					0	0	0.00185496	0	0
GRM3	2913	broad.mit.edu	37	7	86469069	86469069	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:86469069C>T	uc003uid.2	+	4	3338	c.2239C>T	c.(2239-2241)CTG>TTG	p.L747L	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Silent_p.L619L|GRM3_uc010leh.2_Silent_p.L339L	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	747	Helical; Name=5; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CGATGTGATCCTGGTGATCTT	0.448													6	28					0	0	0.00307968	0	0
ABCB4	5244	broad.mit.edu	37	7	87092091	87092091	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:87092091C>T	uc003uiv.1	-	4	345	c.269G>A	c.(268-270)GGA>GAA	p.G90E	ABCB4_uc003uiw.1_Missense_Mutation_p.G90E|ABCB4_uc003uix.1_Missense_Mutation_p.G90E|ABCB4_uc003uiy.2_Missense_Mutation_p.G90E	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	90	Extracellular (By similarity).|ABC transmembrane type-1 1.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GGAGAAGTTTCCTGCAGTATC	0.388													5	33					0	0	0.000602214	0	0
AKAP9	10142	broad.mit.edu	37	7	91631574	91631574	+	Silent	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:91631574A>G	uc003ulg.2	+	8	2568	c.2343A>G	c.(2341-2343)AAA>AAG	p.K781K	AKAP9_uc003ule.2_Silent_p.K793K|AKAP9_uc003ulf.2_Silent_p.K781K|AKAP9_uc003uli.2_Silent_p.K406K	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	793	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GCATTCTTAAAGATGAAAAGA	0.313			T	BRAF	papillary thyroid								7	101					0	0	0.000274275	0	0
SAMD9	54809	broad.mit.edu	37	7	92734271	92734271	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:92734271G>A	uc003umf.2	-	3	1396	c.1140C>T	c.(1138-1140)TTC>TTT	p.F380F	SAMD9_uc003umg.2_Silent_p.F380F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	380						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TTTTTGCTCTGAATTTTTCTT	0.323													6	53					0	0	0.00198382	0	0
CALCR	799	broad.mit.edu	37	7	93073039	93073039	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:93073039G>A	uc003umv.1	-	10	1042	c.781C>T	c.(781-783)CAG>TAG	p.Q261*	CALCR_uc011kia.1_Nonsense_Mutation_p.Q41*|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Nonsense_Mutation_p.Q227*|CALCR_uc003umw.2_Nonsense_Mutation_p.Q227*	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	243	Helical; Name=3; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	ATCATGTACTGGTGGAAAAAA	0.448													4	27					0	0	0.000602214	0	0
CYP3A4	1576	broad.mit.edu	37	7	99370232	99370232	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:99370232G>A	uc003urv.1	-	4	403	c.299C>T	c.(298-300)TCT>TTT	p.S100F	CYP3A4_uc003urw.1_Missense_Mutation_p.S100F|CYP3A4_uc011kiz.1_Missense_Mutation_p.S100F|CYP3A4_uc011kja.1_Missense_Mutation_p.S51F|CYP3A4_uc011kjb.1_Intron	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	100					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	TGTGAAGACAGAATAACATTC	0.299													4	60					0	0	0.00024832	0	0
ZCWPW1	55063	broad.mit.edu	37	7	100002674	100002674	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:100002674G>A	uc003uut.2	-	13	1461	c.1213C>T	c.(1213-1215)CTG>TTG	p.L405L	ZCWPW1_uc011kjq.1_Silent_p.L285L|ZCWPW1_uc003uur.2_Silent_p.L285L|ZCWPW1_uc003uus.2_Silent_p.L285L|ZCWPW1_uc011kjr.1_Silent_p.L405L|ZCWPW1_uc003uuu.1_Silent_p.L406L|ZCWPW1_uc011kjp.1_RNA	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	405							zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GCCATCATCAGGGCCACCCCC	0.448													5	72					0	0	0.00198382	0	0
LRCH4	4034	broad.mit.edu	37	7	100176275	100176275	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:100176275G>A	uc003uvj.2	-	5	786	c.733C>T	c.(733-735)CAG>TAG	p.Q245*	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	245	LRR 9.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CGCCTCACCTGGGCAGGTGGA	0.657													5	17					0	0	0.000602214	0	0
ACTL6B	51412	broad.mit.edu	37	7	100244237	100244237	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:100244237C>T	uc003uvy.2	-	12	1157	c.1050G>A	c.(1048-1050)GGG>GGA	p.G350G	ACTL6B_uc003uvx.1_Silent_p.G141G|ACTL6B_uc003uvz.2_RNA	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	350					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GCAGTGTGTTCCCGCCGGTGA	0.657													4	27					0	0	0.000602214	0	0
ZAN	7455	broad.mit.edu	37	7	100358106	100358106	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:100358106C>T	uc003uwj.2	+	19	3954	c.3789C>T	c.(3787-3789)TTC>TTT	p.F1263F	ZAN_uc003uwk.2_Silent_p.F1263F|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_5'Flank	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1263	VWFD 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AGACGGAGTTCGGTTTGCGGG	0.587													8	38					0	0	0.00307968	0	0
MUC17	140453	broad.mit.edu	37	7	100677362	100677362	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:100677362C>T	uc003uxp.1	+	3	2718	c.2665C>T	c.(2665-2667)CCT>TCT	p.P889S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	889	Extracellular (Potential).|12.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TTCAACAACTCCTGTTGACAC	0.502													7	198					0	0	0.00198382	0	0
MUC17	140453	broad.mit.edu	37	7	100678710	100678710	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:100678710C>T	uc003uxp.1	+	3	4066	c.4013C>T	c.(4012-4014)CCT>CTT	p.P1338L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1338	Extracellular (Potential).|20.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GGAAGAACTCCTTTAACAAGT	0.458													9	150					0	0	0.000274275	0	0
MUC17	140453	broad.mit.edu	37	7	100685955	100685955	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:100685955C>T	uc003uxp.1	+	3	11311	c.11258C>T	c.(11257-11259)ACC>ATC	p.T3753I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3753	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAATAAGCACCCTTGGGACC	0.488													9	82					0	0	0.000274275	0	0
MUC17	140453	broad.mit.edu	37	7	100699490	100699490	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:100699490A>C	uc003uxp.1	+	12	13432	c.13379A>C	c.(13378-13380)CAC>CCC	p.H4460P	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4460	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GATTCCATCCACCTGGAGTCC	0.493													3	24					0	0	0.000602214	0	0
ARMC10	83787	broad.mit.edu	37	7	102738815	102738815	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:102738815C>T	uc003vaw.1	+	7	1239	c.847C>T	c.(847-849)CTA>TTA	p.L283L	ARMC10_uc003vay.1_Silent_p.L224L|ARMC10_uc003vax.1_Silent_p.L248L|ARMC10_uc003vbb.1_Silent_p.L189L|ARMC10_uc011kli.1_Silent_p.L224L|ARMC10_uc010lis.1_Silent_p.L165L|ARMC10_uc003vba.1_RNA|ARMC10_uc003vaz.1_Silent_p.L161L	NM_031905	NP_114111	Q8N2F6	ARM10_HUMAN	SVH protein isoform a	283					regulation of growth	endoplasmic reticulum membrane|integral to membrane	binding			ovary(1)	1						AGTACTTACGCTATTTCAGAA	0.368													7	80					0	0	0.00198382	0	0
TMEM168	64418	broad.mit.edu	37	7	112423814	112423814	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:112423814G>A	uc003vgn.2	-	2	1459	c.1067C>T	c.(1066-1068)TCA>TTA	p.S356L	TMEM168_uc010lju.2_Missense_Mutation_p.S356L|TMEM168_uc011kmr.1_Intron	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	356	Helical; (Potential).					integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						CAACTGCTCTGAAATCAAGCA	0.413													10	106					0	0	0.000673444	0	0
ANKRD7	56311	broad.mit.edu	37	7	117865010	117865010	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:117865010G>A	uc003vji.2	+	1	299	c.126G>A	c.(124-126)AAG>AAA	p.K42K		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	42					male gonad development						0						AGAAGCTGAAGGAATACCTTC	0.483													11	71					0	0	0.00244969	0	0
IQUB	154865	broad.mit.edu	37	7	123092907	123092907	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:123092907G>A	uc003vkn.2	-	13	2843	c.2266C>T	c.(2266-2268)CCA>TCA	p.P756S	IQUB_uc011kny.1_Missense_Mutation_p.P89S|IQUB_uc003vko.2_Missense_Mutation_p.P756S|IQUB_uc010lkt.2_RNA	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	756										ovary(3)|large_intestine(1)	4						GCCAGCACTGGAACCTGAGAA	0.368													4	21					0	0	0.000602214	0	0
ASB15	142685	broad.mit.edu	37	7	123264780	123264780	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:123264780C>T	uc003vku.1	+	8	901	c.609C>T	c.(607-609)GTC>GTT	p.V203V	ASB15_uc003vkv.1_Silent_p.V203V|ASB15_uc003vkw.1_Silent_p.V203V	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	203	ANK 3.				intracellular signal transduction					skin(2)|lung(1)	3						GAGGCAATGTCCACCTGAGAG	0.498											OREG0018282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	36					0	0	0.00307968	0	0
ASB15	142685	broad.mit.edu	37	7	123267301	123267301	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:123267301C>T	uc003vku.1	+	9	1127	c.835C>T	c.(835-837)CCT>TCT	p.P279S	ASB15_uc003vkv.1_Missense_Mutation_p.P279S|ASB15_uc003vkw.1_Missense_Mutation_p.P279S	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	279					intracellular signal transduction					skin(2)|lung(1)	3						AGGACATCTTCCTATACACCG	0.433													4	25					0	0	0.00024832	0	0
POT1	25913	broad.mit.edu	37	7	124503575	124503575	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:124503575G>A	uc003vlm.2	-	8	976	c.375C>T	c.(373-375)TTC>TTT	p.F125F	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_5'UTR|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	125					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						CCTCAGTAGTGAAGTTAAAAT	0.443													5	33					0	0	0.000602214	0	0
GRM8	2918	broad.mit.edu	37	7	126173281	126173281	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:126173281G>A	uc003vlr.2	-	8	2466	c.2155C>T	c.(2155-2157)CCC>TCC	p.P719S	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.P719S|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	719	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	ATGATGTGGGGGGGATCCACA	0.512										HNSCC(24;0.065)			4	23					0	0	0.00024832	0	0
GRM8	2918	broad.mit.edu	37	7	126173845	126173845	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:126173845C>T	uc003vlr.2	-	8	1902	c.1591G>A	c.(1591-1593)GGG>AGG	p.G531R	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.G531R|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	531	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CAAGGGACCCCTTTCACCGTT	0.547										HNSCC(24;0.065)			4	35					0	0	0.000602214	0	0
METTL2B	55798	broad.mit.edu	37	7	128120717	128120717	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:128120717G>A	uc003vnf.2	+	4	612	c.575G>A	c.(574-576)GGA>GAA	p.G192E	METTL2B_uc003vng.2_Missense_Mutation_p.G127E|METTL2B_uc011kop.1_Missense_Mutation_p.G56E	NM_018396	NP_060866	Q6P1Q9	MTL2B_HUMAN	methyltransferase like 2B	192							methyltransferase activity			skin(1)	1						TGTGGTGTGGGAAACACAGTC	0.308													12	56					0	0	0.00316338	0	0
CALU	813	broad.mit.edu	37	7	128399047	128399047	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:128399047C>T	uc003vns.2	+	4	690	c.538C>T	c.(538-540)CTG>TTG	p.L180L	CALU_uc003vnq.2_Silent_p.L180L|CALU_uc003vnr.2_Silent_p.L180L	NM_001130674	NP_001124146	O43852	CALU_HUMAN	calumenin isoform b precursor	180	EF-hand 3.				platelet activation|platelet degranulation	extracellular region|Golgi apparatus|melanosome|sarcoplasmic reticulum lumen	calcium ion binding|protein binding				0						CACAGCTTTCCTGCACCCTGA	0.428													12	118					0	0	0.000978159	0	0
SMO	6608	broad.mit.edu	37	7	128851577	128851578	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:128851577_128851578CC>TT	uc003vor.2	+	11	2182_2183	c.1902_1903CC>TT	c.(1900-1905)CCCCAG>CCTTAG	p.Q635*	SMO_uc003vos.2_Nonsense_Mutation_p.Q310*	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	635	Cytoplasmic (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						CCATACTGCCCCAGGATATTTC	0.594			Mis		skin basal cell 								5	32					0	0	6.4e-05	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673373	141673373	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:141673373C>T	uc003vwx.1	-	1	201	c.117G>A	c.(115-117)GTG>GTA	p.V39V		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	39	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					CCCAAAAATTCACCAAGAAAA	0.493													7	27					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	7	142499830	142499830	+	RNA	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:142499830G>A	uc003wbe.3	+	4		c.500G>A			uc003wbf.3_RNA|uc003wbh.3_Missense_Mutation_p.E196K|uc003wbi.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T cell receptor V beta14-D-J, partial cds.																		CATCCTCTATGAGATCTTGCT	0.572													6	39					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	7	142499880	142499880	+	RNA	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:142499880C>T	uc003wbe.3	+	4		c.550C>T			uc003wbf.3_RNA|uc003wbh.3_Silent_p.L212L|uc003wbi.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T cell receptor V beta14-D-J, partial cds.																		TCAGTGCCCTCGTGCTGATGG	0.557													6	30					0	0	0.00116845	0	0
CLCN1	1180	broad.mit.edu	37	7	143027910	143027910	+	Missense_Mutation	SNP	G	A	A	rs118066140	byFrequency	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:143027910G>A	uc003wcr.1	+	8	986	c.899G>A	c.(898-900)CGG>CAG	p.R300Q	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Missense_Mutation_p.G96R	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	300			R -> Q.		muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TTTGCTGTTCGGAACTACTGG	0.557													6	35					0	0	0.00307968	0	0
OR2A25	392138	broad.mit.edu	37	7	143771496	143771496	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:143771496C>T	uc011ktx.1	+	1	184	c.184C>T	c.(184-186)CTC>TTC	p.L62F		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GTACTTCTTCCTCTCACACCT	0.577													4	40					0	0	0.00024832	0	0
OR2A12	346525	broad.mit.edu	37	7	143792641	143792641	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:143792641C>T	uc011kty.1	+	1	441	c.441C>T	c.(439-441)TGC>TGT	p.C147C		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					CCTCAACTTGCTGGATATTTA	0.448													5	85					0	0	0.000602214	0	0
OR2A12	346525	broad.mit.edu	37	7	143793007	143793007	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:143793007G>A	uc011kty.1	+	1	807	c.807G>A	c.(805-807)CGG>CGA	p.R269R		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					CTCAAGAACGGAGGAAGATCC	0.527													7	104					0	0	0.00198382	0	0
OR2A2	442361	broad.mit.edu	37	7	143807335	143807335	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:143807335C>T	uc011ktz.1	+	1	660	c.660C>T	c.(658-660)ATC>ATT	p.I220I		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					ACATGCACATCCTCGGGGCCA	0.522													5	32					0	0	0.000602214	0	0
ZNF777	27153	broad.mit.edu	37	7	149133841	149133841	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:149133841G>A	uc003wfv.2	-	5	1327	c.1164C>T	c.(1162-1164)CCC>CCT	p.P388P		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	388	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GTCCCATCAGGGGCTCAGGTG	0.597													4	35					0	0	0.00024832	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217150	150217150	+	Missense_Mutation	SNP	G	A	A	rs114367962	byFrequency	TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:150217150G>A	uc003whk.2	+	2	218	c.88G>A	c.(88-90)GGA>AGA	p.G30R		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	30							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CACCATCCTTGGAGAGGAAAT	0.502													4	25					0	0	0.00024832	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325545	150325545	+	Silent	SNP	C	T	T	rs138777121		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:150325545C>T	uc003whn.2	-	3	565	c.141G>A	c.(139-141)GGG>GGA	p.G47G	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	47	GTP (Potential).						GTP binding	p.G47G(1)		upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCCTGTTTTCCCCATGAGAA	0.527													15	138					0	0	0.00121646	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417986	150417986	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:150417986G>A	uc003whq.2	+	3	981	c.894G>A	c.(892-894)GAG>GAA	p.E298E	GIMAP1_uc003whp.2_Silent_p.E306E	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	298	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGTGGTCGGAGGCCGTTGCGG	0.627													5	18					0	0	0.00116845	0	0
CDK5	1020	broad.mit.edu	37	7	150752425	150752425	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:150752425G>A	uc003wir.1	-	8	580	c.519C>T	c.(517-519)CTC>CTT	p.L173L	CDK5_uc003wis.1_Silent_p.L141L	NM_004935	NP_004926	Q00535	CDK5_HUMAN	cyclin-dependent kinase 5 isoform 1	173	Protein kinase.				activation of pro-apoptotic gene products|blood coagulation|cell division|cell proliferation|embryo development|negative regulation of transcription, DNA-dependent|positive regulation of neuron apoptosis	axon|cytosol|dendrite|growth cone|lamellipodium|membrane|neuromuscular junction|neuronal cell body	acetylcholine receptor activator activity|ATP binding|cyclin-dependent protein kinase activity|ErbB-2 class receptor binding|ErbB-3 class receptor binding|tau-protein kinase activity			lung(1)|central_nervous_system(1)	2		Breast(660;0.159)|Ovarian(593;0.182)	OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.008)|Lung(243;0.00942)|BRCA - Breast invasive adenocarcinoma(188;0.242)		TGGCCCCAAAGAGGACATCCG	0.602													4	30					0	0	0.000602214	0	0
PTPRN2	5799	broad.mit.edu	37	7	157691407	157691407	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:157691407C>T	uc003wno.2	-	12	1867	c.1746G>A	c.(1744-1746)GAG>GAA	p.E582E	PTPRN2_uc003wnp.2_Silent_p.E565E|PTPRN2_uc003wnq.2_Silent_p.E553E|PTPRN2_uc003wnr.2_Silent_p.E544E|PTPRN2_uc011kwa.1_Silent_p.E605E	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	582	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CAGAGGTTTCCTCCAGTTTGT	0.512													7	98					0	0	0.000442599	0	0
WDR60	55112	broad.mit.edu	37	7	158695278	158695278	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:158695278C>T	uc003woe.3	+	10	1507	c.1349C>T	c.(1348-1350)CCC>CTC	p.P450L	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_5'UTR	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	450										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		GAAAAGGAGCCCAGGACAGGT	0.428													6	54					0	0	0.00116845	0	0
FBXO25	26260	broad.mit.edu	37	8	400073	400073	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:400073C>T	uc003wox.2	+	6	731	c.465C>T	c.(463-465)ATC>ATT	p.I155I	FBXO25_uc003woy.2_Silent_p.I155I|FBXO25_uc003woz.2_Silent_p.I88I|FBXO25_uc003wpa.2_5'UTR	NM_183421	NP_904357	Q8TCJ0	FBX25_HUMAN	F-box only protein 25 isoform 1	155						nucleus|SCF ubiquitin ligase complex	actin binding|ubiquitin-protein ligase activity			lung(1)	1		Ovarian(12;0.00965)|Colorectal(14;0.0815)|Myeloproliferative disorder(644;0.116)|all_neural(12;0.122)		Epithelial(5;3.14e-14)|OV - Ovarian serous cystadenocarcinoma(5;1.56e-07)|BRCA - Breast invasive adenocarcinoma(11;1.88e-06)		TGGATAAAATCGTTCAAAAGG	0.343													9	84					0	0	0.000274275	0	0
RP1L1	94137	broad.mit.edu	37	8	10466091	10466091	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:10466091C>T	uc003wtc.2	-	4	5746	c.5517G>A	c.(5515-5517)GAG>GAA	p.E1839E		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1839					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCCCTTCAGCCTCCGGGGCCT	0.632													11	72					0	0	0.000673444	0	0
RP1L1	94137	broad.mit.edu	37	8	10467446	10467446	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:10467446C>T	uc003wtc.2	-	4	4391	c.4162G>A	c.(4162-4164)GAG>AAG	p.E1388K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1388					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TCAAGAGCCTCTCCTTGCAGT	0.458													18	153					0	0	0.00152264	0	0
SGCZ	137868	broad.mit.edu	37	8	13965738	13965739	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:13965738_13965739TC>GT	uc003wwq.2	-	6	1213_1214	c.553_554GA>AC	c.(553-555)GAA>ACA	p.E185T	SGCZ_uc010lss.2_Missense_Mutation_p.E138T	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	172	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		TACGGCTCCTTCAGTGCCTGGG	0.465													4	16					0	0	6.4e-05	0	0
ADAM28	10863	broad.mit.edu	37	8	24199186	24199186	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:24199186C>T	uc003xdy.2	+	16	1829	c.1746C>T	c.(1744-1746)TTC>TTT	p.F582F	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.F269F	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	582	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TAGTGACTTTCCTGACATGTA	0.423													6	61					0	0	0.00116845	0	0
NRG1	3084	broad.mit.edu	37	8	32621337	32621337	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:32621337C>T	uc003xiv.2	+	12	1857	c.1340C>T	c.(1339-1341)TCG>TTG	p.S447L	NRG1_uc010lvo.2_3'UTR|NRG1_uc003xiu.2_Missense_Mutation_p.S452L|NRG1_uc003xiw.2_Missense_Mutation_p.S444L|NRG1_uc003xit.2_3'UTR|NRG1_uc010lvr.2_Missense_Mutation_p.S189L|NRG1_uc010lvs.2_Missense_Mutation_p.S189L|NRG1_uc010lvp.2_Missense_Mutation_p.S401L|NRG1_uc010lvq.2_Missense_Mutation_p.S384L|NRG1_uc011lbg.1_3'UTR|NRG1_uc011lbh.1_Missense_Mutation_p.S290L|NRG1_uc003xja.2_Missense_Mutation_p.S258L	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	447	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		TCCCCCAAATCGCCCCCTTCG	0.557													6	32					0	0	0.00116845	0	0
RNF122	79845	broad.mit.edu	37	8	33406331	33406331	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:33406331G>A	uc003xjo.1	-	6	810	c.408C>T	c.(406-408)CCC>CCT	p.P136P		NM_024787	NP_079063	Q9H9V4	RN122_HUMAN	ring finger protein 122	136						endoplasmic reticulum|Golgi apparatus|integral to membrane	zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0966)|Kidney(114;0.116)		GACTAGCAATGGGCTTGTTAC	0.527													9	80					0	0	0.000442599	0	0
UNC5D	137970	broad.mit.edu	37	8	35579780	35579780	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:35579780C>T	uc003xjr.1	+	9	1498	c.1170C>T	c.(1168-1170)GTC>GTT	p.V390V	UNC5D_uc003xjs.1_Silent_p.V385V|UNC5D_uc003xju.1_5'Flank|UNC5D_uc003xjt.1_Silent_p.V148V	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	390	Helical; (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GTGCTGCCGTCGTGGCCGTTG	0.527													7	102					0	0	0.00307968	0	0
UNC5D	137970	broad.mit.edu	37	8	35647876	35647876	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:35647876G>A	uc003xjr.1	+	17	2986	c.2658_splice	c.e17-1	p.R886_splice	UNC5D_uc003xjs.1_Splice_Site_p.R881_splice|UNC5D_uc003xju.1_Splice_Site_p.R462_splice	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor						apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TCTCCATCTAGGAATTTATCT	0.368													4	40					0	0	0.00116845	0	0
KCNU1	157855	broad.mit.edu	37	8	36675221	36675221	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:36675221G>A	uc010lvw.2	+	10	1136	c.1049G>A	c.(1048-1050)AGG>AAG	p.R350K	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	350	RCK N-terminal.|Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		GCTTTCCTGAGGAATTTCCTC	0.443													4	67					0	0	0.00024832	0	0
ADAM9	8754	broad.mit.edu	37	8	38874779	38874779	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:38874779C>T	uc003xmr.2	+	6	530	c.452C>T	c.(451-453)CCC>CTC	p.P151L	ADAM9_uc011lcf.1_RNA|ADAM9_uc011lcg.1_RNA|ADAM9_uc010lwr.2_RNA	NM_003816	NP_003807	Q13443	ADAM9_HUMAN	ADAM metallopeptidase domain 9 isoform 1	151	Extracellular (Potential).				activation of MAPKK activity|cell-cell adhesion mediated by integrin|cell-matrix adhesion|keratinocyte differentiation|monocyte activation|PMA-inducible membrane protein ectodomain proteolysis|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell adhesion mediated by integrin|positive regulation of keratinocyte migration|positive regulation of macrophage fusion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of protein secretion|response to calcium ion|response to glucocorticoid stimulus|response to hydrogen peroxide|response to manganese ion|response to tumor necrosis factor|transforming growth factor beta receptor signaling pathway	extracellular space|extracellular space|integral to membrane|intrinsic to external side of plasma membrane	collagen binding|integrin binding|laminin binding|metalloendopeptidase activity|protein kinase C binding|SH3 domain binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.0153)	LUSC - Lung squamous cell carcinoma(45;2.74e-07)			GGGATTGAACCCCTGCAGAAC	0.353													4	34					0	0	0.00116845	0	0
IDO1	3620	broad.mit.edu	37	8	39780096	39780096	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:39780096C>T	uc003xnm.2	+	6	577	c.463C>T	c.(463-465)CGT>TGT	p.R155C	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	155					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	GTTCTCATTTCGTGATGGAGA	0.358													7	40					0	0	0.000442599	0	0
POTEA	340441	broad.mit.edu	37	8	43173695	43173695	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:43173695G>A	uc003xpz.1	+	9	1160	c.1117G>A	c.(1117-1119)GTT>ATT	p.V373I	POTEA_uc003xqa.1_Missense_Mutation_p.V327I	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	373										ovary(1)	1						TGGTGGATTAGTTCCACAAAG	0.408													5	29					0	0	0.00116845	0	0
MCM4	4173	broad.mit.edu	37	8	48878868	48878868	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:48878868C>T	uc003xqk.1	+	9	1049	c.954C>T	c.(952-954)GAC>GAT	p.D318D	MCM4_uc003xql.1_Silent_p.D318D|MCM4_uc011ldi.1_Silent_p.D305D	NM_182746	NP_877423	P33991	MCM4_HUMAN	minichromosome maintenance complex component 4	318					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(2)|skin(2)	4		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				TGGAGATGGACCGCGGCCGCA	0.622													6	17					0	0	0.00116845	0	0
ST18	9705	broad.mit.edu	37	8	53076622	53076622	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:53076622C>T	uc003xqz.2	-	8	1480	c.1324G>A	c.(1324-1326)GAA>AAA	p.E442K	ST18_uc011ldq.1_Missense_Mutation_p.E89K|ST18_uc011ldr.1_Missense_Mutation_p.E407K|ST18_uc011lds.1_Missense_Mutation_p.E347K|ST18_uc003xra.2_Missense_Mutation_p.E442K|ST18_uc003xrb.2_Missense_Mutation_p.E442K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	442						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GCCAATTTTTCAGCTGCAGCA	0.418													7	55					0	0	0.00307968	0	0
XKR4	114786	broad.mit.edu	37	8	56436207	56436207	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:56436207C>T	uc003xsf.2	+	3	1406	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	458	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			GCAGGCTATTCATTTACTATT	0.468													7	57					0	0	0.00307968	0	0
CLVS1	157807	broad.mit.edu	37	8	62289207	62289207	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:62289207G>A	uc003xuh.2	+	3	823	c.499G>A	c.(499-501)GAA>AAA	p.E167K	CLVS1_uc003xug.2_Nonsense_Mutation_p.W165*|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.E167K	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	167	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						GCTGTCATTGGAAGTCCTAAT	0.443													4	38					0	0	0.00116845	0	0
TMEM67	91147	broad.mit.edu	37	8	94809438	94809438	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:94809438G>A	uc011lgk.1	+	19	2008	c.1937G>A	c.(1936-1938)GGA>GAA	p.G646E	TMEM67_uc010maw.2_Missense_Mutation_p.G352E|TMEM67_uc003yga.3_Missense_Mutation_p.G565E|TMEM67_uc011lgl.1_Missense_Mutation_p.G45E	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	646					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			CGACCTAAAGGAAAGGTTCTT	0.328													5	37					0	0	0.000602214	0	0
CDH17	1015	broad.mit.edu	37	8	95143179	95143179	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:95143179C>T	uc003ygh.2	-	16	2334	c.2209G>A	c.(2209-2211)GAG>AAG	p.E737K	CDH17_uc011lgo.1_Missense_Mutation_p.E523K|CDH17_uc011lgp.1_Missense_Mutation_p.E737K	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	737	Cadherin 7.|Extracellular (Potential).					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			TACTCCCTCTCCTCAAACTCT	0.473													5	29					0	0	0.000602214	0	0
ESRP1	54845	broad.mit.edu	37	8	95683690	95683690	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:95683690C>T	uc003ygq.3	+	11	1426	c.1243C>T	c.(1243-1245)CGA>TGA	p.R415*	ESRP1_uc003ygr.3_Nonsense_Mutation_p.R415*|ESRP1_uc003ygs.3_Nonsense_Mutation_p.R415*|ESRP1_uc003ygt.3_Nonsense_Mutation_p.R415*|ESRP1_uc003ygu.3_Nonsense_Mutation_p.R415*|ESRP1_uc003ygv.2_Nonsense_Mutation_p.R255*|ESRP1_uc003ygw.2_Nonsense_Mutation_p.R255*	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	415					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						GGTGCTGAATCGATTCTCCTC	0.398													12	111					0	0	0.000978159	0	0
CCNE2	9134	broad.mit.edu	37	8	95894423	95894423	+	Silent	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:95894423A>G	uc003yhc.2	-	11	1147	c.1038T>C	c.(1036-1038)TTT>TTC	p.F346F	CCNE2_uc003yhd.2_Silent_p.F346F	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	346					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					GAATCTTCTTAAAAGTCTTCA	0.363													26	296					0	0	0.000878237	0	0
TSPYL5	85453	broad.mit.edu	37	8	98288839	98288839	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:98288839C>T	uc003yhy.2	-	1	1338	c.1234G>A	c.(1234-1236)GGG>AGG	p.G412R		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	412					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					TGGCTCACCCCAGGCTGAGTA	0.522													9	76					0	0	0.000442599	0	0
VPS13B	157680	broad.mit.edu	37	8	100654473	100654473	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:100654473G>A	uc003yiv.2	+	34	5841	c.5730G>A	c.(5728-5730)GGG>GGA	p.G1910G	VPS13B_uc003yiw.2_Silent_p.G1885G	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1910					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTCCTTCAGGGAAAAAAATAG	0.453													5	56					0	0	0.000602214	0	0
TM7SF4	81501	broad.mit.edu	37	8	105360908	105360908	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:105360908C>T	uc003ylx.1	+	2	177	c.128C>T	c.(127-129)TCA>TTA	p.S43L		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	43	Helical; (Potential).				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GCTCTTATTTCAGTGGGCCTC	0.512													6	49					0	0	0.00198382	0	0
ZHX2	22882	broad.mit.edu	37	8	123964123	123964123	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:123964123C>T	uc003ypk.1	+	3	940	c.373C>T	c.(373-375)CTA>TTA	p.L125L		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	125	C2H2-type 2.					cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			GTACGACTCCCTATCCGACCA	0.478													4	40					0	0	0.00024832	0	0
ZHX1	11244	broad.mit.edu	37	8	124265833	124265833	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:124265833A>G	uc003yqe.2	-	3	2784	c.2354T>C	c.(2353-2355)CTT>CCT	p.L785P	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.L785P|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.L785P	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	785	Homeobox 5.				negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			ATAATCCTTAAGTATTGCAGT	0.423													11	76					0	0	0.000978159	0	0
ADCY8	114	broad.mit.edu	37	8	132051665	132051665	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:132051665G>A	uc003ytd.3	-	1	1171	c.915C>T	c.(913-915)ATC>ATT	p.I305I	ADCY8_uc010mds.2_Silent_p.I305I	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	305	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CCACTTGGAGGATGACCTGCA	0.597										HNSCC(32;0.087)			6	34					0	0	0.00116845	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141231633	141231633	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:141231633G>A	uc003yvj.2	-	17	2615	c.2481C>T	c.(2479-2481)GTC>GTT	p.V827V	TRAPPC9_uc003yvh.2_Silent_p.V925V|TRAPPC9_uc010mel.1_Silent_p.V248V|TRAPPC9_uc003yvi.1_Silent_p.V818V	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	827					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						GGGGCCGAACGACCTGCCGAA	0.522													7	23					0	0	0.00198382	0	0
GPR172A	79581	broad.mit.edu	37	8	145584592	145584592	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr8:145584592G>T	uc003zcc.1	+	5	1412	c.1255G>T	c.(1255-1257)GGC>TGC	p.G419C	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Missense_Mutation_p.G419C|GPR172A_uc003zce.1_Missense_Mutation_p.G419C|GPR172A_uc010mfy.1_Missense_Mutation_p.G419C|GPR172A_uc003zcf.1_Missense_Mutation_p.G419C|GPR172A_uc011llc.1_Missense_Mutation_p.G331C	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	419	Helical; (Potential).					integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			CTCTCTGCTCGGCGCTGTTGC	0.652													5	50					0.00198382	0.00445074	0.00198382	1	0
FREM1	158326	broad.mit.edu	37	9	14775892	14775892	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:14775892C>T	uc003zlm.2	-	25	5342	c.4752G>A	c.(4750-4752)GGG>GGA	p.G1584G	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_5'Flank|FREM1_uc003zll.2_Silent_p.G120G	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1584	CSPG 11.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCTGGGAGTCCCCTCCTGAGT	0.512													4	35					0	0	0.000602214	0	0
IFNA7	3444	broad.mit.edu	37	9	21201699	21201699	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:21201699C>T	uc003zop.1	-	1	506	c.466G>A	c.(466-468)GAG>AAG	p.E156K	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	156					blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		TATTTCTTCTCCATTAGATAA	0.433													15	127					0	0	0.000566183	0	0
IFNA16	3449	broad.mit.edu	37	9	21216942	21216942	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:21216942G>A	uc003zor.1	-	1	369	c.363C>T	c.(361-363)GCC>GCT	p.A121A	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	121					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		GTGTCACACAGGCTTCTAGGT	0.448													7	79					0	0	0.00307968	0	0
IFNA6	3443	broad.mit.edu	37	9	21350663	21350664	+	Missense_Mutation	DNP	TC	GG	GG			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:21350663_21350664TC>GG	uc011lni.1	-	1	223_224	c.223_224GA>CC	c.(223-225)GAA>CCA	p.E75P		NM_021002	NP_066282	P05013	IFNA6_HUMAN	interferon, alpha 6 precursor	75					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		AGAGATGGCTTCAGCCTTCTGG	0.485													5	38					0	0	6.4e-05	0	0
ELAVL2	1993	broad.mit.edu	37	9	23704929	23704929	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:23704929G>A	uc003zpu.2	-	4	749	c.474C>T	c.(472-474)GTC>GTT	p.V158V	ELAVL2_uc003zps.2_Silent_p.V158V|ELAVL2_uc003zpt.2_Silent_p.V158V|ELAVL2_uc003zpv.2_Silent_p.V158V|ELAVL2_uc003zpw.2_Silent_p.V158V	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	158	RRM 2.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		TGACCTGGTCGACAAGAATAC	0.428													9	60					0	0	0.000274275	0	0
TRPM6	140803	broad.mit.edu	37	9	77386731	77386731	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:77386731C>T	uc004ajl.1	-	25	3662	c.3424G>A	c.(3424-3426)GAT>AAT	p.D1142N	TRPM6_uc004ajk.1_Missense_Mutation_p.D1137N|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.D98N	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1142	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTTTTCAGATCCTCCTTACTG	0.383													5	60					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	9	78973740	78973740	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:78973740G>A	uc004akc.1	+	10	1961	c.1741G>A	c.(1741-1743)GAT>AAT	p.D581N						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		CATGGGCCAGGATGGCACAGT	0.458													10	74					0	0	0.000673444	0	0
ZCCHC6	79670	broad.mit.edu	37	9	88967772	88967772	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:88967772C>T	uc004aoq.2	-	2	558	c.343G>A	c.(343-345)GAA>AAA	p.E115K	ZCCHC6_uc011ltf.1_RNA|ZCCHC6_uc004aor.2_RNA|ZCCHC6_uc004aos.2_RNA|ZCCHC6_uc004aot.2_Missense_Mutation_p.E115K|ZCCHC6_uc004aou.2_Missense_Mutation_p.E115K|ZCCHC6_uc004aov.2_Missense_Mutation_p.E115K|ZCCHC6_uc004aow.2_Missense_Mutation_p.E115K|ZCCHC6_uc010mqf.1_Missense_Mutation_p.E115K	NM_024617	NP_078893	Q5VYS8	TUT7_HUMAN	zinc finger, CCHC domain containing 6	115					RNA 3'-end processing		nucleic acid binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)	2						GGTTTGAATTCTCTCCAGTTG	0.423													11	82					0	0	0.000978159	0	0
DIRAS2	54769	broad.mit.edu	37	9	93376091	93376091	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:93376091C>T	uc004aqx.1	-	2	130	c.19G>A	c.(19-21)GAT>AAT	p.D7N		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	7					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						ACCCGGTAATCGTTACTCTGC	0.507													9	52					0	0	0.000978159	0	0
OGN	4969	broad.mit.edu	37	9	95152158	95152158	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:95152158C>T	uc004asa.2	-	5	843	c.608G>A	c.(607-609)GGA>GAA	p.G203E	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|OGN_uc004asb.2_Missense_Mutation_p.G203E|OGN_uc011ltx.1_Missense_Mutation_p.G221E	NM_014057	NP_054776	P20774	MIME_HUMAN	osteoglycin preproprotein	203	LRR 5.					extracellular space|proteinaceous extracellular matrix	growth factor activity				0						TGCTTTGATTCCCCTACTCTT	0.313													7	74					0	0	0.00198382	0	0
C9orf3	84909	broad.mit.edu	37	9	97718249	97718249	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:97718249T>G	uc004ava.2	+	8	1959	c.1824T>G	c.(1822-1824)TTT>TTG	p.F608L	C9orf3_uc004auy.2_Missense_Mutation_p.F509L|C9orf3_uc004auz.1_Missense_Mutation_p.F509L|C9orf3_uc004avc.2_Missense_Mutation_p.F63L	NM_032823	NP_116212	Q8N6M6	AMPO_HUMAN	aminopeptidase O	608					leukotriene biosynthetic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.000275)		ATTTTTCATTTTTAAGAAAAT	0.408													6	96					0	0	0.00116845	0	0
OR13C5	138799	broad.mit.edu	37	9	107360965	107360965	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:107360965G>A	uc011lvp.1	-	1	730	c.730C>T	c.(730-732)CGT>TGT	p.R244C		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						ACAGTCAGACGAGCTGAGCAG	0.418													5	28					0	0	0.000602214	0	0
HDHD3	81932	broad.mit.edu	37	9	116136431	116136431	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:116136431G>A	uc004bhi.1	-	2	988	c.204C>T	c.(202-204)GGC>GGT	p.G68G	HDHD3_uc004bhj.2_Silent_p.G68G|HDHD3_uc004bhk.2_Silent_p.G68G	NM_031219	NP_112496	Q9BSH5	HDHD3_HUMAN	haloacid dehalogenase-like hydrolase domain	68							phosphoglycolate phosphatase activity|protein binding				0						GGGAGGTTAGGCCGTGGCTCA	0.637													5	26					0	0	0.000602214	0	0
PAPPA	5069	broad.mit.edu	37	9	119033629	119033629	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:119033629A>T	uc004bjn.2	+	9	3268	c.2887A>T	c.(2887-2889)ATG>TTG	p.M963L	PAPPA_uc011lxp.1_Missense_Mutation_p.M658L|PAPPA_uc011lxq.1_Missense_Mutation_p.M338L	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	963					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ATGCGACGACATGAATAAGAT	0.398													9	73					0	0	0.00185496	0	0
PPP6C	5537	broad.mit.edu	37	9	127920551	127920551	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:127920551A>T	uc004bpg.3	-	4	569	c.348T>A	c.(346-348)AGT>AGA	p.S116R	PPP6C_uc010mwv.2_Missense_Mutation_p.S153R|PPP6C_uc010mww.2_Missense_Mutation_p.S94R|PPP6C_uc011lzr.1_Intron	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	116					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						TTATCTGTCTACTCTCATGAT	0.353													11	91					0	0	0.000978159	0	0
RALGPS1	9649	broad.mit.edu	37	9	129728188	129728188	+	Silent	SNP	C	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:129728188C>A	uc004bqo.1	+	3	390	c.123C>A	c.(121-123)GCC>GCA	p.A41A	RALGPS1_uc011mab.1_Silent_p.A41A|RALGPS1_uc011mac.1_Silent_p.A41A|RALGPS1_uc004bqq.3_Silent_p.A41A	NM_014636	NP_055451	Q5JS13	RGPS1_HUMAN	Ral GEF with PH domain and SH3 binding motif 1	41					small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity			ovary(1)	1						GCTATGATGCCGTTGTCTTCG	0.572													4	54					0.00116845	0.00262961	0.00116845	1	0
GARNL3	84253	broad.mit.edu	37	9	130075766	130075766	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:130075766C>T	uc011mae.1	+	4	767	c.366C>T	c.(364-366)TTC>TTT	p.F122F	GARNL3_uc011mad.1_Silent_p.F100F	NM_032293	NP_115669	Q5VVW2	GARL3_HUMAN	GTPase activating Rap/RanGAP domain-like 3	122					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity|small GTPase regulator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GCCCTTTCTTCTTGTCCGTGA	0.443													6	48					0	0	0.00198382	0	0
GLE1	2733	broad.mit.edu	37	9	131284953	131284953	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:131284953C>T	uc004bvj.2	+	4	553	c.439C>T	c.(439-441)CTG>TTG	p.L147L	GLE1_uc004bvi.2_Silent_p.L147L|GLE1_uc010myd.2_Intron	NM_001003722	NP_001003722	Q53GS7	GLE1_HUMAN	GLE1 RNA export mediator homolog isoform 1	147					poly(A)+ mRNA export from nucleus|protein transport|transmembrane transport	cytoplasm|nuclear pore	protein binding				0						TCAGGAGGGCCTGAGGCTATG	0.313													6	22					0	0	0.00116845	0	0
SPTAN1	6709	broad.mit.edu	37	9	131345360	131345360	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:131345360C>T	uc004bvl.3	+	15	1924	c.1811C>T	c.(1810-1812)CCA>CTA	p.P604L	SPTAN1_uc011mbg.1_Missense_Mutation_p.P604L|SPTAN1_uc011mbh.1_Missense_Mutation_p.P616L|SPTAN1_uc004bvm.3_Missense_Mutation_p.P604L|SPTAN1_uc004bvn.3_Missense_Mutation_p.P604L	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	604	Spectrin 7.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						TCACAGGATCCATCCAACCTA	0.438													5	27					0	0	0.00116845	0	0
PRDM12	59335	broad.mit.edu	37	9	133553968	133553968	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:133553968C>T	uc004bzt.1	+	4	683	c.623C>T	c.(622-624)ACC>ATC	p.T208I		NM_021619	NP_067632	Q9H4Q4	PRD12_HUMAN	PR domain containing 12	208					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		TCACACAACACCTTCCTGGGG	0.597													6	32					0	0	0.00116845	0	0
MRPS2	51116	broad.mit.edu	37	9	138395412	138395412	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:138395412G>A	uc004cfv.3	+	4	398	c.324G>A	c.(322-324)GGG>GGA	p.G108G	MRPS2_uc004cfw.3_Silent_p.G18G|MRPS2_uc004cfx.3_Silent_p.G23G|MRPS2_uc010nat.2_Silent_p.G89G|uc004cfy.2_RNA	NM_016034	NP_057118	Q9Y399	RT02_HUMAN	mitochondrial ribosomal protein S2	108					translation	mitochondrion|small ribosomal subunit	structural constituent of ribosome				0				OV - Ovarian serous cystadenocarcinoma(145;1.46e-53)|Epithelial(140;2.04e-47)|all cancers(34;1.23e-42)		ACATCTTTGGGAGCCGCCTGG	0.602													5	31					0	0	0.000602214	0	0
ASMT	438	broad.mit.edu	37	X	1755428	1755428	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:1755428G>A	uc004cqd.2	+	9	1030	c.885G>A	c.(883-885)GAG>GAA	p.E295E	ASMT_uc010ncy.2_Silent_p.E295E|ASMT_uc004cqe.2_Silent_p.E220E	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	267					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACCTGCTGGAGAGGATCTACC	0.527													10	149					0	0	0.000673444	0	0
ARSH	347527	broad.mit.edu	37	X	2931203	2931203	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:2931203G>A	uc011mhj.1	+	3	330	c.330G>A	c.(328-330)ACG>ACA	p.T110T		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	110						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				GCTACCGCACGGGACTCATAG	0.572													4	36					0	0	0.000602214	0	0
ARSF	416	broad.mit.edu	37	X	3021848	3021848	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:3021848G>A	uc004cre.1	+	9	1369	c.1148G>A	c.(1147-1149)GGA>GAA	p.G383E	ARSF_uc004crf.1_Missense_Mutation_p.G383E	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	383						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGCGTCCCAGGAATTGTCCGA	0.453													7	41					0	0	0.00198382	0	0
PRKX	5613	broad.mit.edu	37	X	3592649	3592649	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:3592649G>A	uc010nde.2	-	2	692	c.325C>T	c.(325-327)CTC>TTC	p.L109F		NM_005044	NP_005035	P51817	PRKX_HUMAN	protein kinase, X-linked	109	Protein kinase.						ATP binding|cAMP-dependent protein kinase activity			skin(2)|lung(1)	3		all_lung(23;0.000396)|Lung NSC(23;0.00123)				AGCCTGATGAGGAACGGGTGG	0.567													7	44					0	0	0.00198382	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811554	5811554	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:5811554C>T	uc010ndh.2	-	6	2256	c.1755G>A	c.(1753-1755)ACG>ACA	p.T585T	NLGN4X_uc004crp.2_Silent_p.T605T|NLGN4X_uc004crq.2_Silent_p.T585T|NLGN4X_uc010ndi.2_Silent_p.T622T|NLGN4X_uc004crr.2_Silent_p.T585T|NLGN4X_uc010ndj.2_Silent_p.T585T	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	585	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AAGCCACTTTCGTTGCCCGGT	0.463													8	90					0	0	0.000274275	0	0
NLGN4X	57502	broad.mit.edu	37	X	5947423	5947423	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:5947423C>T	uc010ndh.2	-	3	1024	c.523G>A	c.(523-525)GGA>AGA	p.G175R	NLGN4X_uc004crp.2_Missense_Mutation_p.G195R|NLGN4X_uc004crq.2_Missense_Mutation_p.G175R|NLGN4X_uc010ndi.2_Missense_Mutation_p.G175R|NLGN4X_uc004crr.2_Missense_Mutation_p.G175R|NLGN4X_uc010ndj.2_Missense_Mutation_p.G175R	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	175	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						ATGTAAGATCCCCCATGGATA	0.443													4	16					0	0	0.000602214	0	0
SHROOM2	357	broad.mit.edu	37	X	9863144	9863144	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:9863144C>T	uc004csu.1	+	4	1286	c.1196C>T	c.(1195-1197)CCC>CTC	p.P399L		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	399					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				AGCTGGCCGCCCTCCAAGGAT	0.672													3	10					0	0	6.4e-05	0	0
FRMPD4	9758	broad.mit.edu	37	X	12734766	12734767	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:12734766_12734767GG>AA	uc004cuz.1	+	15	2694_2695	c.2188_2189GG>AA	c.(2188-2190)GGG>AAG	p.G730K	FRMPD4_uc011mij.1_Missense_Mutation_p.G722K	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	730					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GGCCGCGGAGGGGATCGAGGAA	0.559													9	101					0	0	6.4e-05	0	0
CTPS2	56474	broad.mit.edu	37	X	16720909	16720909	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:16720909G>A	uc004cxk.2	-	2	861	c.117C>T	c.(115-117)ATC>ATT	p.I39I	CTPS2_uc004cxl.2_Silent_p.I39I|CTPS2_uc004cxm.2_Silent_p.I39I	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	39					glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					TATAGGGGTCGATTTTTATGG	0.458													12	90					0	0	0.00244969	0	0
RBBP7	5931	broad.mit.edu	37	X	16870694	16870694	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:16870694G>A	uc004cxt.2	-	8	1301	c.943C>T	c.(943-945)CAT>TAT	p.H315Y	RBBP7_uc004cxs.1_Missense_Mutation_p.H359Y|RBBP7_uc004cxu.2_Missense_Mutation_p.H306Y|RBBP7_uc010nez.2_3'UTR	NM_002893	NP_002884	Q16576	RBBP7_HUMAN	retinoblastoma binding protein 7	315					cell proliferation|cellular heat acclimation|CenH3-containing nucleosome assembly at centromere|DNA replication|multicellular organismal development|negative regulation of cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex|NuRD complex	protein binding			upper_aerodigestive_tract(1)|ovary(1)	2	Hepatocellular(33;0.0997)					TCATCTTTATGAGATTCGAAG	0.358													7	51					0	0	0.00307968	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212336	26212336	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:26212336G>A	uc004dbr.2	+	2	522	c.373G>A	c.(373-375)GAT>AAT	p.D125N	MAGEB6_uc010ngc.1_Intron	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	125	Ser-rich.									ovary(3)	3						CTCAAAATATGATGTGGCTGC	0.552													6	54					0	0	0.00116845	0	0
GK	2710	broad.mit.edu	37	X	30714753	30714753	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:30714753G>A	uc004dch.3	+	8	861	c.682G>A	c.(682-684)GAA>AAA	p.E228K	GK_uc010ngj.2_Missense_Mutation_p.E228K|GK_uc004dci.3_Missense_Mutation_p.E228K|GK_uc011mjz.1_Missense_Mutation_p.E23K|GK_uc011mka.1_Missense_Mutation_p.E65K|GK_uc010ngk.2_Missense_Mutation_p.E23K	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	228					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						AATTCCAATGGAAATTCTTCC	0.229													7	66					0	0	0.000442599	0	0
DMD	1756	broad.mit.edu	37	X	32834585	32834585	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:32834585C>T	uc004dda.1	-	6	774	c.530G>A	c.(529-531)AGG>AAG	p.R177K	DMD_uc004dcz.2_Missense_Mutation_p.R54K|DMD_uc004dcy.1_Missense_Mutation_p.R173K|DMD_uc004ddb.1_Missense_Mutation_p.R169K|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.R169K|DMD_uc010ngp.1_Missense_Mutation_p.R54K|DMD_uc010ngq.1_Intron|DMD_uc010ngr.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	177	CH 2.|Actin-binding.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ATCTTCTTACCTATGACTATG	0.393													6	45					0	0	0.00116845	0	0
FAM47A	158724	broad.mit.edu	37	X	34149091	34149091	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:34149091C>T	uc004ddg.2	-	1	1338	c.1305G>A	c.(1303-1305)GGG>GGA	p.G435G		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	435										ovary(4)|central_nervous_system(1)	5						TCAGCGTCCTCCCAGAATCCA	0.552													4	32					0	0	0.00116845	0	0
FAM47A	158724	broad.mit.edu	37	X	34149886	34149886	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:34149886C>T	uc004ddg.2	-	1	543	c.510G>A	c.(508-510)GAG>GAA	p.E170E		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	170										ovary(4)|central_nervous_system(1)	5						CTGTTGTCTTCTCCTGGGTCT	0.567													5	27					0	0	0.000602214	0	0
FAM47C	442444	broad.mit.edu	37	X	37029445	37029445	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:37029445A>G	uc004ddl.1	+	1	2976	c.2962A>G	c.(2962-2964)AGC>GGC	p.S988G		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	988										ovary(3)	3						TTTCATTCTAAGCAAGGGCTA	0.448													4	81					0	0	0.00024832	0	0
DUSP21	63904	broad.mit.edu	37	X	44703829	44703829	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:44703829G>A	uc004dgd.2	+	1	581	c.451G>A	c.(451-453)GAA>AAA	p.E151K		NM_022076	NP_071359	Q9H596	DUS21_HUMAN	dual specificity phosphatase 21	151	Tyrosine-protein phosphatase.					cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			large_intestine(1)|lung(1)	2						CGGCTTTTGGGAACAGCTCAT	0.517													6	36					0	0	0.00116845	0	0
CCNB3	85417	broad.mit.edu	37	X	50054018	50054018	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:50054018C>T	uc004dox.3	+	6	3147	c.2849C>T	c.(2848-2850)GCC>GTC	p.A950V	CCNB3_uc004doy.2_Missense_Mutation_p.A950V|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	950					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GAGCCATTAGCCTTACAAGAG	0.478													5	41					0	0	0.000602214	0	0
DGKK	139189	broad.mit.edu	37	X	50129462	50129462	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:50129462G>A	uc010njr.1	-	15	2301	c.2241C>T	c.(2239-2241)CCC>CCT	p.P747P		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	747					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					GAGGAATGAAGGGCTTCCTAT	0.473													4	30					0	0	0.00024832	0	0
KDM5C	8242	broad.mit.edu	37	X	53223707	53223707	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:53223707G>A	uc004drz.2	-	23	4185	c.3652C>T	c.(3652-3654)CGC>TGC	p.R1218C	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Missense_Mutation_p.R1151C|KDM5C_uc004dsa.2_Missense_Mutation_p.R1217C|uc004dsb.1_RNA	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	1218	PHD-type 2.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						CTGAGGAGGCGAGGCACTGAC	0.607			N|F|S		clear cell renal carcinoma								4	11					0	0	0.00024832	0	0
PHF8	23133	broad.mit.edu	37	X	54020143	54020143	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:54020143C>T	uc004dsu.2	-	13	1698	c.1625G>A	c.(1624-1626)CGA>CAA	p.R542Q	PHF8_uc004dst.2_Missense_Mutation_p.R506Q|PHF8_uc004dsv.2_Missense_Mutation_p.R372Q|PHF8_uc004dsw.2_Intron|PHF8_uc004dsx.2_Missense_Mutation_p.R270Q|PHF8_uc004dsy.2_Missense_Mutation_p.R506Q	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	542					brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						CTTGCCCTTTCGCTCTGCCTT	0.512													6	40					0	0	0.00116845	0	0
HEPH	9843	broad.mit.edu	37	X	65392397	65392397	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:65392397A>G	uc011moz.1	+	3	437	c.377A>G	c.(376-378)TAT>TGT	p.Y126C	HEPH_uc004dwn.2_Missense_Mutation_p.Y126C|HEPH_uc004dwo.2_5'UTR|HEPH_uc010nkr.2_Missense_Mutation_p.Y126C|HEPH_uc011mpa.1_Missense_Mutation_p.Y126C	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	123	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						ACTCGTCCCTATACCATCCAC	0.507													3	44					0	0	6.4e-05	0	0
HEPH	9843	broad.mit.edu	37	X	65417617	65417617	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:65417617C>T	uc011moz.1	+	10	1663	c.1603C>T	c.(1603-1605)CCT>TCT	p.P535S	HEPH_uc004dwn.2_Missense_Mutation_p.P535S|HEPH_uc004dwo.2_Missense_Mutation_p.P265S|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Missense_Mutation_p.P535S	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	532	Extracellular (Potential).|Plastocyanin-like 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TGCTCAGGATCCTGCTTGTCT	0.562													4	33					0	0	0.00024832	0	0
ERCC6L	54821	broad.mit.edu	37	X	71425190	71425190	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:71425190C>T	uc004eaq.1	-	2	3524	c.3427G>A	c.(3427-3429)GAA>AAA	p.E1143K	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Missense_Mutation_p.E1020K	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	1143					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					GGATCCTCTTCTGTATACTTG	0.493													5	46					0	0	0.000602214	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433929	72433929	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:72433929G>A	uc004ebi.2	-	1	756	c.400C>T	c.(400-402)CAT>TAT	p.H134Y	NAP1L2_uc011mqj.1_5'UTR	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	134					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TCAATGTCATGAAATTCCCTC	0.383													9	65					0	0	0.000274275	0	0
TSIX	9383	broad.mit.edu	37	X	73046700	73046700	+	RNA	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:73046700C>T	uc004ebn.2	+	1		c.34661C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TCACAAGTCTCAGTTCTTAGG	0.512													5	57					0	0	0.000602214	0	0
ATRX	546	broad.mit.edu	37	X	76938476	76938476	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:76938476G>A	uc004ecp.3	-	9	2504	c.2272C>T	c.(2272-2274)CAT>TAT	p.H758Y	ATRX_uc004ecq.3_Missense_Mutation_p.H720Y|ATRX_uc004eco.3_Missense_Mutation_p.H543Y|ATRX_uc004ecr.2_Missense_Mutation_p.H690Y|ATRX_uc010nlx.1_Missense_Mutation_p.H729Y|ATRX_uc010nly.1_Missense_Mutation_p.H703Y	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	758					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TGGTTTGTATGAATTTCATTA	0.358			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						14	153					0	0	0.00185496	0	0
ATRX	546	broad.mit.edu	37	X	76939391	76939391	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:76939391C>T	uc004ecp.3	-	9	1589	c.1357G>A	c.(1357-1359)GAA>AAA	p.E453K	ATRX_uc004ecq.3_Missense_Mutation_p.E415K|ATRX_uc004eco.3_Missense_Mutation_p.E238K|ATRX_uc004ecr.2_Missense_Mutation_p.E414K|ATRX_uc010nlx.1_Missense_Mutation_p.E453K|ATRX_uc010nly.1_Missense_Mutation_p.E398K	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	453					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TCCTTCTTTTCCAAAGCACAA	0.353			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						12	149					0	0	0.00185496	0	0
ATRX	546	broad.mit.edu	37	X	76939417	76939417	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:76939417C>T	uc004ecp.3	-	9	1563	c.1331G>A	c.(1330-1332)CGA>CAA	p.R444Q	ATRX_uc004ecq.3_Missense_Mutation_p.R406Q|ATRX_uc004eco.3_Missense_Mutation_p.R229Q|ATRX_uc004ecr.2_Missense_Mutation_p.R405Q|ATRX_uc010nlx.1_Missense_Mutation_p.R444Q|ATRX_uc010nly.1_Missense_Mutation_p.R389Q	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	444					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTCTCCTTTTCGTGCTTTTGT	0.358			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						10	139					0	0	0.000442599	0	0
ATP7A	538	broad.mit.edu	37	X	77243747	77243747	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:77243747G>A	uc004ecx.3	+	3	290	c.130G>A	c.(130-132)GAA>AAA	p.E44K	ATP7A_uc004ecw.2_Missense_Mutation_p.E44K	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	44	HMA 1.|Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						GGTATCACTGGAAGAAAAAAA	0.338													5	116					0	0	0.00198382	0	0
TAF7L	54457	broad.mit.edu	37	X	100548021	100548021	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:100548021C>T	uc004ehb.2	-	1	25	c.13G>A	c.(13-15)GAG>AAG	p.E5K	TAF7L_uc004ehc.1_5'Flank	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	5					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						AGCTGTCCCTCGGGGCACTCC	0.483													11	140					0	0	0.000978159	0	0
TCEAL2	140597	broad.mit.edu	37	X	101382337	101382337	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:101382337G>A	uc004eip.2	+	3	754	c.535G>A	c.(535-537)GAT>AAT	p.D179N		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TAGGGTGGAGGATAAAAGGAG	0.433													9	90					0	0	0.000673444	0	0
GPRASP1	9737	broad.mit.edu	37	X	101910756	101910756	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:101910756G>A	uc004ejj.3	+	5	2716	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	GPRASP1_uc004eji.3_Missense_Mutation_p.E639K|GPRASP1_uc010nod.2_Missense_Mutation_p.E639K	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	639	Glu-rich.					cytoplasm	protein binding			ovary(1)|lung(1)	2						GGAGGACAAGGAAGAGGCCAT	0.517													5	69					0	0	0.000602214	0	0
BEX1	55859	broad.mit.edu	37	X	102317848	102317848	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:102317848C>T	uc004ejt.1	-	3	595	c.355G>A	c.(355-357)GAT>AAT	p.D119N		NM_018476	NP_060946	Q9HBH7	BEX1_HUMAN	brain expressed, X-linked 1	119					cell differentiation|nervous system development	cytoplasm|nucleus				ovary(1)	1						CAAAACTCATCATGATGGTCA	0.488													7	60					0	0	0.00307968	0	0
FAM199X	139231	broad.mit.edu	37	X	103431288	103431288	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:103431288G>A	uc004elw.2	+	4	881	c.715G>A	c.(715-717)GAA>AAA	p.E239K	FAM199X_uc004elx.2_Missense_Mutation_p.E56K	NM_207318	NP_997201	Q6PEV8	F199X_HUMAN	hypothetical protein LOC139231	239										ovary(1)	1						TCTCACAGATGAAAAACTGAA	0.308													7	61					0	0	0.00198382	0	0
CXorf57	55086	broad.mit.edu	37	X	105912433	105912433	+	Silent	SNP	C	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:105912433C>G	uc004emi.3	+	13	2461	c.2310C>G	c.(2308-2310)CCC>CCG	p.P770P	CXorf57_uc004emj.3_Silent_p.P673P	NM_018015	NP_060485	Q6NSI4	CX057_HUMAN	hypothetical protein LOC55086	770										ovary(1)|lung(1)|breast(1)	3						CTTTCCTACCCATGTATTGTC	0.333													10	154					0	0	0.000673444	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106117028	106117028	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:106117028C>T	uc004emo.2	+	21	3361	c.3196C>T	c.(3196-3198)CCT>TCT	p.P1066S	MORC4_uc004emp.3_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	1066						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GGAGAAAGATCCTTGTTCCTT	0.458													9	66					0	0	0.000442599	0	0
COL4A6	1288	broad.mit.edu	37	X	107420111	107420111	+	Silent	SNP	A	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:107420111A>C	uc004enw.3	-	28	2752	c.2649T>G	c.(2647-2649)TCT>TCG	p.S883S	COL4A6_uc004env.3_Silent_p.S882S|COL4A6_uc011msn.1_Silent_p.S882S|COL4A6_uc010npk.2_Silent_p.S882S	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	883	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CGACCCCTGGAGAGCCTGGGC	0.542									Alport_syndrome_with_Diffuse_Leiomyomatosis				7	76					0	0	0.00198382	0	0
RGAG1	57529	broad.mit.edu	37	X	109694885	109694885	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:109694885C>T	uc004eor.1	+	3	1286	c.1040C>T	c.(1039-1041)TCC>TTC	p.S347F	RGAG1_uc011msr.1_Missense_Mutation_p.S347F	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	347										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GAAGCAATGTCCCCAGCACTA	0.547													14	142					0	0	0.00316338	0	0
CAPN6	827	broad.mit.edu	37	X	110494810	110494810	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:110494810C>T	uc004epc.1	-	6	1028	c.860G>A	c.(859-861)GGA>GAA	p.G287E	CAPN6_uc011msu.1_Missense_Mutation_p.G32E	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	287	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						TTCCTGTCTTCCCAAGGGGTT	0.488													8	99					0	0	0.00307968	0	0
LHFPL1	340596	broad.mit.edu	37	X	111874653	111874653	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:111874653G>A	uc004epq.2	-	4	991	c.658C>T	c.(658-660)CCT>TCT	p.P220S	LHFPL1_uc004epp.2_Missense_Mutation_p.P243S|LHFPL1_uc010nqa.2_RNA|LHFPL1_uc010nqb.2_Missense_Mutation_p.P187S	NM_178175	NP_835469	Q86WI0	LHPL1_HUMAN	lipoma HMGIC fusion partner-like 1 precursor	220						integral to membrane					0						AAAGCTCAAGGTTTGAGGCAA	0.463													6	49					0	0	0.00198382	0	0
KLHL13	90293	broad.mit.edu	37	X	117054225	117054225	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:117054225C>T	uc004eql.2	-	3	411	c.349G>A	c.(349-351)GAT>AAT	p.D117N	KLHL13_uc004eqk.2_Missense_Mutation_p.D66N|KLHL13_uc011mtn.1_5'UTR|KLHL13_uc011mto.1_Missense_Mutation_p.D111N|KLHL13_uc011mtp.1_Missense_Mutation_p.D119N|KLHL13_uc004eqm.2_Missense_Mutation_p.D66N|KLHL13_uc011mtq.1_Missense_Mutation_p.D101N	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	117	BTB.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TTGAAGTAATCACTAGCAGAT	0.388													8	59					0	0	0.000673444	0	0
DOCK11	139818	broad.mit.edu	37	X	117775215	117775215	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:117775215G>A	uc004eqp.2	+	39	4270	c.4207G>A	c.(4207-4209)GAA>AAA	p.E1403K	DOCK11_uc004eqq.2_Missense_Mutation_p.E1182K	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1403					blood coagulation	cytosol	GTP binding			ovary(3)	3						TACAGCTACTGAAGTTTCCCT	0.363													5	31					0	0	0.00116845	0	0
ZBTB33	10009	broad.mit.edu	37	X	119388445	119388445	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:119388445C>T	uc004esn.1	+	2	1403	c.1175C>T	c.(1174-1176)TCA>TTA	p.S392L	ZBTB33_uc010nqm.1_Missense_Mutation_p.S392L	NM_006777	NP_006768	Q86T24	KAISO_HUMAN	kaiso	392					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleolus|plasma membrane	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TTAAAAATTTCAGATATAATT	0.343													6	66					0	0	0.00116845	0	0
THOC2	57187	broad.mit.edu	37	X	122769982	122769982	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:122769982C>T	uc004etu.2	-	19	1998	c.1966G>A	c.(1966-1968)GAT>AAT	p.D656N	THOC2_uc011muh.1_Missense_Mutation_p.D581N	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	656					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						CCAGCAAGATCAATTGGATAT	0.328													7	55					0	0	0.000442599	0	0
ODZ1	10178	broad.mit.edu	37	X	123657236	123657236	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:123657236C>T	uc004euj.2	-	17	3075	c.3011G>A	c.(3010-3012)GGA>GAA	p.G1004E	ODZ1_uc011muj.1_Missense_Mutation_p.G1003E|ODZ1_uc010nqy.2_Missense_Mutation_p.G1004E	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1004	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AACAATAGTTCCCCTCTCTGG	0.433													6	52					0	0	0.00116845	0	0
ODZ1	10178	broad.mit.edu	37	X	123663788	123663788	+	Silent	SNP	A	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:123663788A>T	uc004euj.2	-	16	2761	c.2697T>A	c.(2695-2697)ACT>ACA	p.T899T	ODZ1_uc011muj.1_Silent_p.T898T|ODZ1_uc010nqy.2_Silent_p.T899T	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	899	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CCACTAGAGGAGTTCCATCTA	0.458													5	38					0	0	0.000602214	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125298627	125298627	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:125298627G>A	uc004euk.1	-	1	1308	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	427										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						GCGCATTGGGGAACTCTCCCA	0.617													9	65					0	0	0.000673444	0	0
BCORL1	63035	broad.mit.edu	37	X	129148255	129148255	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:129148255C>T	uc004evb.1	+	4	1621	c.1507C>T	c.(1507-1509)CCG>TCG	p.P503S	BCORL1_uc010nrd.1_Missense_Mutation_p.P405S	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	503	Pro-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						CCGTTCTTACCCGTATGCATT	0.602													5	113					0	0	0.000602214	0	0
BCORL1	63035	broad.mit.edu	37	X	129149216	129149216	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:129149216C>T	uc004evb.1	+	4	2582	c.2468C>T	c.(2467-2469)CCT>CTT	p.P823L	BCORL1_uc010nrd.1_Missense_Mutation_p.P725L	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	823					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						AATGGGAAACCTACCAGCACC	0.592													4	50					0	0	0.00024832	0	0
ELF4	2000	broad.mit.edu	37	X	129203370	129203370	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:129203370C>T	uc004evd.3	-	8	1477	c.1092G>A	c.(1090-1092)CTG>CTA	p.L364L	ELF4_uc004eve.3_Silent_p.L364L	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4	364					natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTCCCAATTCCAGACTCGCAG	0.582			T	ERG	AML								13	86					0	0	0.00185496	0	0
ZNF75D	7626	broad.mit.edu	37	X	134421132	134421132	+	Silent	SNP	C	G	G			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:134421132C>G	uc004eyp.2	-	7	4125	c.1470G>C	c.(1468-1470)TCG>TCC	p.S490S	ZNF75D_uc004eym.2_Intron|ZNF75D_uc004eyn.2_Silent_p.S269S|ZNF75D_uc004eyo.2_Silent_p.S395S	NM_007131	NP_009062	P51815	ZN75D_HUMAN	zinc finger protein 75	490	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TAAGAAGGCTCGATCGCCTAC	0.438													3	77					0	0	6.4e-05	0	0
GPR112	139378	broad.mit.edu	37	X	135431576	135431576	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:135431576C>T	uc004ezu.1	+	6	6002	c.5711C>T	c.(5710-5712)TCC>TTC	p.S1904F	GPR112_uc010nsb.1_Missense_Mutation_p.S1699F|GPR112_uc010nsc.1_Missense_Mutation_p.S1671F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1904	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GTACCTACATCCAATGAGATG	0.433													8	42					0	0	0.000673444	0	0
HTATSF1	27336	broad.mit.edu	37	X	135593942	135593942	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:135593942G>A	uc004ezw.2	+	10	2460	c.2038G>A	c.(2038-2040)GAA>AAA	p.E680K	HTATSF1_uc004ezx.2_Missense_Mutation_p.E680K	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	680	Asp/Glu-rich (acidic).|Mediates interaction with the P-TEFb complex.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AGATGACAAGGAAGATGAAGA	0.413													6	36					0	0	0.00198382	0	0
SPANXC	64663	broad.mit.edu	37	X	140335736	140335736	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:140335736C>T	uc004fbk.2	-	2	264	c.208G>A	c.(208-210)GAC>AAC	p.D70N	SPANXC_uc004fbl.2_RNA	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X	70						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					CGGGCGTGGTCATTCAGCAGT	0.453													10	179					0	0	0.00136819	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994545	140994545	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:140994545C>T	uc004fbt.2	+	4	1641	c.1355C>T	c.(1354-1356)TCC>TTC	p.S452F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	452							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCTTTCTCCTACACTTTA	0.463										HNSCC(15;0.026)			11	92					0	0	0.000673444	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994653	140994653	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:140994653C>T	uc004fbt.2	+	4	1749	c.1463C>T	c.(1462-1464)TCC>TTC	p.S488F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	488							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCCTCCTCCTCCACTTTA	0.483										HNSCC(15;0.026)			7	116					0	0	0.00307968	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994835	140994835	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:140994835C>T	uc004fbt.2	+	4	1931	c.1645C>T	c.(1645-1647)CCT>TCT	p.P549S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	549							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCACTACTTTCCTCAGAGCCC	0.552										HNSCC(15;0.026)			9	123					0	0	0.000442599	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995406	140995406	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:140995406C>T	uc004fbt.2	+	4	2502	c.2216C>T	c.(2215-2217)TCT>TTT	p.S739F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	739							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCAGTCTTCTCTCCAGAGT	0.552										HNSCC(15;0.026)			9	89					0	0	0.000274275	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995819	140995819	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:140995819G>A	uc004fbt.2	+	4	2915	c.2629G>A	c.(2629-2631)GAA>AAA	p.E877K	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	877							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCCAGTAGATGAATATACAAG	0.493										HNSCC(15;0.026)			14	92					0	0	0.00316338	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995902	140995902	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:140995902C>T	uc004fbt.2	+	4	2998	c.2712C>T	c.(2710-2712)TTC>TTT	p.F904F	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	904							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGCCCTTGTTCACTTATACAC	0.478										HNSCC(15;0.026)			7	137					0	0	0.000274275	0	0
AFF2	2334	broad.mit.edu	37	X	148037322	148037322	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:148037322C>T	uc004fcp.2	+	11	2226	c.1747C>T	c.(1747-1749)CCC>TCC	p.P583S	AFF2_uc004fcq.2_Missense_Mutation_p.P573S|AFF2_uc004fcr.2_Missense_Mutation_p.P544S|AFF2_uc011mxb.1_Missense_Mutation_p.P548S|AFF2_uc004fcs.2_Missense_Mutation_p.P550S|AFF2_uc011mxc.1_Missense_Mutation_p.P224S	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	583					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CCCAGCTGAACCCAAAGAAAG	0.483													7	105					0	0	0.00307968	0	0
AFF2	2334	broad.mit.edu	37	X	148037568	148037568	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:148037568G>A	uc004fcp.2	+	11	2472	c.1993G>A	c.(1993-1995)GAC>AAC	p.D665N	AFF2_uc004fcq.2_Missense_Mutation_p.D655N|AFF2_uc004fcr.2_Missense_Mutation_p.D626N|AFF2_uc011mxb.1_Missense_Mutation_p.D630N|AFF2_uc004fcs.2_Missense_Mutation_p.D632N|AFF2_uc011mxc.1_Missense_Mutation_p.D306N	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	665					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GGAGCTTCATGACCCACCAAG	0.488													7	79					0	0	0.00307968	0	0
AFF2	2334	broad.mit.edu	37	X	148038102	148038102	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:148038102G>A	uc004fcp.2	+	11	3006	c.2527G>A	c.(2527-2529)GCT>ACT	p.A843T	AFF2_uc004fcq.2_Missense_Mutation_p.A833T|AFF2_uc004fcr.2_Missense_Mutation_p.A804T|AFF2_uc011mxb.1_Missense_Mutation_p.A808T|AFF2_uc004fcs.2_Missense_Mutation_p.A810T|AFF2_uc011mxc.1_Missense_Mutation_p.A484T	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	843					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					AGCTGTCACAGCTGTGGAGAA	0.532													5	32					0	0	0.000602214	0	0
MAMLD1	10046	broad.mit.edu	37	X	149639405	149639405	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:149639405G>A	uc004fee.1	+	3	1636	c.1560G>A	c.(1558-1560)ATG>ATA	p.M520I	MAMLD1_uc011mxt.1_Missense_Mutation_p.M482I|MAMLD1_uc011mxu.1_Missense_Mutation_p.M495I|MAMLD1_uc011mxv.1_Missense_Mutation_p.M495I|MAMLD1_uc011mxw.1_Missense_Mutation_p.M447I	NM_005491	NP_005482	Q13495	MAMD1_HUMAN	mastermind-like domain containing 1	520				M -> T (in Ref. 2; BAG37651).	male gonad development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(192;6.56e-05)					CCCTGAGCATGATCATGCAGC	0.423													5	45					0	0	0.000602214	0	0
MTM1	4534	broad.mit.edu	37	X	149787544	149787544	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:149787544G>A	uc004fef.3	+	6	452	c.376G>A	c.(376-378)GAA>AAA	p.E126K	MTM1_uc011mxx.1_RNA|MTM1_uc011mxy.1_Missense_Mutation_p.E89K|MTM1_uc011mxz.1_Missense_Mutation_p.E11K|MTM1_uc010nte.2_Intron	NM_000252	NP_000243	Q13496	MTM1_HUMAN	myotubularin	126					endosome to lysosome transport|intermediate filament organization|mitochondrion distribution|mitochondrion morphogenesis|phosphatidylinositol dephosphorylation|protein transport|regulation of vacuole organization	filopodium|late endosome|plasma membrane|ruffle	intermediate filament binding|phosphatidylinositol binding|phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGAAACAGGAAGGCCACAG	0.468													6	49					0	0	0.00198382	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092698	151092698	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:151092698G>A	uc004fez.2	+	3	718	c.562G>A	c.(562-564)GAT>AAT	p.D188N	MAGEA4_uc004ffa.2_Missense_Mutation_p.D188N|MAGEA4_uc004ffb.2_Missense_Mutation_p.D188N|MAGEA4_uc004ffc.2_Missense_Mutation_p.D188N|MAGEA4_uc004ffd.2_Missense_Mutation_p.D188N	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	188	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCTTTCCTATGATGGCCTGCT	0.547													7	78					0	0	0.00307968	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303925	151303925	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:151303925G>A	uc004ffk.2	-	5	576	c.168C>T	c.(166-168)TCC>TCT	p.S56S	MAGEA10_uc004ffl.2_Silent_p.S56S	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	56	Poly-Ser.										0	Acute lymphoblastic leukemia(192;6.56e-05)					aggaggaagaggaggaggagg	0.413													5	72					0	0	0.00116845	0	0
GABRA3	2556	broad.mit.edu	37	X	151424282	151424282	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:151424282C>T	uc010ntk.1	-	5	759	c.519G>A	c.(517-519)TTG>TTA	p.L173L		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	173	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CGTTGTCCACCAATCTGAGCA	0.488													6	52					0	0	0.00116845	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869597	151869597	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:151869597G>C	uc004ffq.1	+	3	481	c.287G>C	c.(286-288)AGC>ACC	p.S96T	MAGEA6_uc004ffr.1_Missense_Mutation_p.S96T|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	96							protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					GAGGGGCCAAGCACCTTCCCT	0.567													4	56					0	0	0.000602214	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869869	151869869	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:151869869G>A	uc004ffq.1	+	3	753	c.559G>A	c.(559-561)GAT>AAT	p.D187N	MAGEA6_uc004ffr.1_Missense_Mutation_p.D187N|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	187	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCTCCTACGATGGCCTGCT	0.557													7	74					0	0	0.00198382	0	0
PNMA3	29944	broad.mit.edu	37	X	152226134	152226134	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:152226134G>A	uc004fhc.2	+	2	1058	c.722G>A	c.(721-723)GGA>GAA	p.G241E	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	241					apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					caggtgttcggacctgtggag	0													16	114					0	0	0.00316338	0	0
ZNF275	10838	broad.mit.edu	37	X	152612745	152612745	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:152612745G>A	uc004fhg.1	+	4	779	c.602G>A	c.(601-603)AGG>AAG	p.R201K	ZNF275_uc011mym.1_Missense_Mutation_p.R201K|ZNF275_uc011myn.1_Missense_Mutation_p.R138K			A6NFS0	A6NFS0_HUMAN	SubName: Full=cDNA FLJ16723 fis, clone UTERU3004418, highly similar to Zinc finger protein 275; SubName: Full=Putative uncharacterized protein ZNF275;	201						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CAGCATCTGAGGGTCCACAGC	0.547													5	80					0	0	0.00116845	0	0
HCFC1	3054	broad.mit.edu	37	X	153225813	153225813	+	Silent	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:153225813G>A	uc004fjp.2	-	7	1485	c.957C>T	c.(955-957)CCC>CCT	p.P319P		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	319				P->S: Eliminates VIC formation and association with VP16. Unable to rescue proliferation in temperature-sensitive arrested cells.	cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCCGAGCACGGGGGATGTTGT	0.612													3	9					0	0	0.000602214	0	0
RPL10	6134	broad.mit.edu	37	X	153628232	153628232	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:153628232C>T	uc004fkm.2	+	5	467	c.279C>T	c.(277-279)CCC>CCT	p.P93P	uc010nuv.1_5'Flank|RPL10_uc004fko.2_Silent_p.P93P|RPL10_uc004fkn.1_Silent_p.P93P|RPL10_uc004fkp.1_Silent_p.P93P|RPL10_uc004fkq.1_RNA|RPL10_uc004fkr.1_Silent_p.P18P|SNORA70_uc010nux.1_5'Flank	NM_006013	NP_006004	P27635	RL10_HUMAN	ribosomal protein L10	93					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|endoplasmic reticulum	structural constituent of ribosome				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGCTCCACCCCTTCCACGTCA	0.522													5	27					0	0	0.00116845	0	0
FUNDC2	65991	broad.mit.edu	37	X	154282917	154282917	+	Silent	SNP	C	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:154282917C>T	uc004fmw.2	+	5	690	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_023934	NP_076423	Q9BWH2	FUND2_HUMAN	FUN14 domain containing 2	180						mitochondrion					0	all_cancers(53;3.51e-17)|all_epithelial(53;5.13e-11)|all_lung(58;3.84e-07)|Lung NSC(58;1.2e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GGGGATTTTTCGGAGGCTTTC	0.418													6	65					0	0	0.00116845	0	0
VBP1	7411	broad.mit.edu	37	X	154464603	154464603	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:154464603G>A	uc004fnc.2	+	5	537	c.478G>A	c.(478-480)GAA>AAA	p.E160K	VBP1_uc004fnd.2_Missense_Mutation_p.E123K	NM_003372	NP_003363	P61758	PFD3_HUMAN	von Hippel-Lindau binding protein 1	160					'de novo' posttranslational protein folding	nucleus|prefoldin complex	unfolded protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TTCCCTGGAGGAAGACCTTGA	0.348													6	91					0	0	0.00307968	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186915848	186915849	+	Frame_Shift_Ins	INS	-	T	T			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr1:186915848_186915849insT	uc001gsc.2	+	11	1318_1319	c.1113_1114insT	c.(1111-1116)AAATTTfs	p.K371fs	PLA2G4A_uc010pos.1_Frame_Shift_Ins_p.K311fs	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	371_372	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	TTGGAAGCAAATTTTTTATGGG	0.322													7	26	---	---	---	---					
HMHA1	23526	broad.mit.edu	37	19	1078032	1078032	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr19:1078032delG	uc002lqz.1	+	11	1593	c.1362delG	c.(1360-1362)GAGfs	p.E454fs	HMHA1_uc010xgd.1_Frame_Shift_Del_p.E470fs|HMHA1_uc010xge.1_Frame_Shift_Del_p.E294fs|HMHA1_uc002lra.1_Frame_Shift_Del_p.E294fs|HMHA1_uc002lrb.1_Frame_Shift_Del_p.E337fs|HMHA1_uc002lrc.1_Frame_Shift_Del_p.E89fs	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	454	Potential.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGAGGAGGAGGCCAAGAACA	0.647													2	4	---	---	---	---					
RFC2	5982	broad.mit.edu	37	7	73654277	73654277	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:73654277delG	uc003uaj.2	-	7	709	c.684delC	c.(682-684)GACfs	p.D228fs	RFC2_uc011kfa.1_RNA|RFC2_uc003uak.2_Frame_Shift_Del_p.D194fs|RFC2_uc010lbp.2_Frame_Shift_Del_p.D157fs|RFC2_uc003ual.2_Frame_Shift_Del_p.D127fs	NM_181471	NP_852136	P35250	RFC2_HUMAN	replication factor C 2 isoform 1	228					cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding			liver(1)|central_nervous_system(1)	2						CCTGCCTCATGTCTCCCTGGG	0.582													2	4	---	---	---	---					
FZD1	8321	broad.mit.edu	37	7	90894242	90894243	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr7:90894242_90894243delGC	uc003ula.2	+	1	460_461	c.47_48delGC	c.(46-48)GGCfs	p.G16fs		NM_003505	NP_003496	Q9UP38	FZD1_HUMAN	frizzled 1 precursor	16					autocrine signaling|axonogenesis|brain development|canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|embryo development|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|lung alveolus development|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to drug|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cell surface|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|receptor binding|Wnt receptor activity|Wnt-protein binding				0	all_cancers(62;3.1e-10)|all_epithelial(64;1.66e-08)|Breast(17;0.000635)|Lung NSC(181;0.153)|all_lung(186;0.154)|all_hematologic(106;0.215)		STAD - Stomach adenocarcinoma(171;0.0134)			GCCGGCGGTGGCGCGAGCTGGG	0.762													2	4	---	---	---	---					
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	-	-	rs35266724		TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chr9:139277995_139277997delGCT	uc004chh.2	-	15	1633_1635	c.1624_1626delAGC	c.(1624-1626)AGCdel	p.S542del		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	542					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CGTCCTCCTCgctgctgctgctg	0.473													7	6	---	---	---	---					
IRS4	8471	broad.mit.edu	37	X	107977802	107977803	+	Frame_Shift_Ins	INS	-	C	C			TCGA-D3-A3C8-06A-12D-A19A-08	TCGA-D3-A3C8-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aa389195-4218-423d-bd51-379da698f458	4ec65aab-5672-4b6c-893b-7544f5ec74e3	g.chrX:107977802_107977803insC	uc004eoc.2	-	1	1805_1806	c.1772_1773insG	c.(1771-1773)GGCfs	p.G591fs		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	591						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CTGAGCCTTTGCCCCCCCCAGA	0.545													7	204	---	---	---	---					
