Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRDM16	63976	broad.mit.edu	37	1	3328233	3328233	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:3328233C>T	uc001akf.2	+	9	1552	c.1472C>T	c.(1471-1473)TCC>TTC	p.S491F	PRDM16_uc001akc.2_Missense_Mutation_p.S491F|PRDM16_uc001akd.2_Missense_Mutation_p.S491F|PRDM16_uc001ake.2_Missense_Mutation_p.S491F|PRDM16_uc009vlh.2_Missense_Mutation_p.S192F	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	491	Pro-rich.			S -> Y (in Ref. 2; AAG33382).	brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TACTTTCCCTCCAGGCCGCAC	0.682			T	EVI1	MDS|AML								32	93					0	0	0.006230	0	0
CHD5	26038	broad.mit.edu	37	1	6215778	6215778	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:6215778C>T	uc001amb.1	-	4	488	c.388_splice	c.e4-1	p.E130_splice		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5						chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ACTTGGGCTCCTACAGAGACC	0.612													7	20					0	0	0.004482	0	0
CAMTA1	23261	broad.mit.edu	37	1	7723933	7723933	+	Silent	SNP	C	T	T	rs141193119		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:7723933C>T	uc001aoi.2	+	9	1533	c.1326C>T	c.(1324-1326)TTC>TTT	p.F442F		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	442					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GCCACAAGTTCGCCTTTCCCA	0.652													15	41					0	0	0.004007	0	0
UBE4B	10277	broad.mit.edu	37	1	10205044	10205044	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:10205044C>T	uc001aqs.3	+	18	3123	c.2410C>T	c.(2410-2412)CCA>TCA	p.P804S	UBE4B_uc001aqr.3_Missense_Mutation_p.P675S|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Missense_Mutation_p.P259S|UBE4B_uc001aqt.1_Missense_Mutation_p.P144S	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	804					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		GAAAGATTCCCCACTGGCAAC	0.388													4	29					0	0	0.009096	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12954431	12954431	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:12954431C>T	uc001auo.2	-	3	925	c.852G>A	c.(850-852)CTG>CTA	p.L284L		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	284											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCAGGTGCTCCAGGTGCTCTT	0.383													16	40					0	0	0.003954	0	0
PRAMEF16	654348	broad.mit.edu	37	1	13497656	13497656	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:13497656G>A	uc001aux.2	+	3	983	c.953G>A	c.(952-954)AGC>AAC	p.S318N		NM_001045480	NP_001038945	Q5VWM1	PRA16_HUMAN	PRAME family member 16	318											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CAGTACCCAAGCCTCAGTCAG	0.493													19	86					0	0	0.013726	0	0
SPEN	23013	broad.mit.edu	37	1	16260357	16260357	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:16260357C>T	uc001axk.1	+	11	7826	c.7622C>T	c.(7621-7623)CCC>CTC	p.P2541L	SPEN_uc010obp.1_Missense_Mutation_p.P2500L	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2541	RID.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CTCATGGACCCCAAGTATGTG	0.582													47	231					0	0	0.014410	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809604	18809604	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:18809604C>G	uc001bax.2	+	1	2181	c.2129C>G	c.(2128-2130)ACG>AGG	p.T710R	KLHDC7A_uc009vpg.2_Missense_Mutation_p.T492R	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	710						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		ACGTACCGGACGCCTTACCCG	0.647													14	31					0	0	0.002450	0	0
ZBTB40	9923	broad.mit.edu	37	1	22838270	22838270	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:22838270G>A	uc001bft.2	+	12	2615	c.2104G>A	c.(2104-2106)GAC>AAC	p.D702N	ZBTB40_uc001bfu.2_Missense_Mutation_p.D702N|ZBTB40_uc009vqi.1_Missense_Mutation_p.D590N|ZBTB40_uc001bfv.1_Missense_Mutation_p.D331N	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	702					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		AGCCAAAGAAGACAGCCAGCC	0.483													4	28					0	0	0.000602	0	0
HCRTR1	3061	broad.mit.edu	37	1	32085235	32085235	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:32085235C>T	uc009vtx.2	+	4	687	c.302C>T	c.(301-303)CCG>CTG	p.P101L	HCRTR1_uc001btb.2_Intron|HCRTR1_uc001btc.3_Intron|HCRTR1_uc001btd.2_Missense_Mutation_p.P101L|HCRTR1_uc010ogl.1_Missense_Mutation_p.P101L	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	101	Helical; Name=2; (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		ATCTGCCTGCCGGCCAGCCTG	0.602													9	19					0	0	0.004482	0	0
COL16A1	1307	broad.mit.edu	37	1	32122013	32122013	+	Silent	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:32122013A>G	uc001btk.1	-	66	4454	c.4089T>C	c.(4087-4089)CCT>CCC	p.P1363P	COL16A1_uc001bti.1_5'UTR|COL16A1_uc001btj.1_Silent_p.P1161P	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	1363	Triple-helical region 2 (COL2) with 2 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		TGGGACCAGGAGGTCCATAGA	0.587													5	15					0	0	0.001984	0	0
CSMD2	114784	broad.mit.edu	37	1	34191055	34191055	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:34191055C>T	uc001bxn.1	-	17	2499	c.2470G>A	c.(2470-2472)GGG>AGG	p.G824R	CSMD2_uc001bxm.1_Missense_Mutation_p.G864R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	824	CUB 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACCTGGGTCCCGTGGTAAACC	0.542													8	21					0	0	0.004482	0	0
MACF1	23499	broad.mit.edu	37	1	39781189	39781189	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:39781189C>T	uc010ois.1	+	28	3495	c.3290C>T	c.(3289-3291)ACC>ATC	p.T1097I	MACF1_uc001cda.1_Missense_Mutation_p.T1005I|MACF1_uc001cdc.1_Missense_Mutation_p.T184I|MACF1_uc009vvq.1_Missense_Mutation_p.T154I|MACF1_uc001cdb.1_Missense_Mutation_p.T184I	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1097					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGGCAGCACACCCAGGAGGAT	0.373													27	97					0	0	0.010818	0	0
RLF	6018	broad.mit.edu	37	1	40704981	40704981	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:40704981C>T	uc001cfc.3	+	8	4638	c.4607C>T	c.(4606-4608)GCC>GTC	p.A1536V	RLF_uc001cfd.3_Missense_Mutation_p.A1227V	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	1536					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			AGAGCTGAGGCCCTCCATATG	0.443													21	67					0	0	0.003954	0	0
ZNF684	127396	broad.mit.edu	37	1	41012517	41012517	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:41012517C>T	uc001cft.1	+	5	773	c.522C>T	c.(520-522)TTC>TTT	p.F174F		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	174	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			AGTTTCATTTCATTAGACATG	0.338													6	18					0	0	0.001984	0	0
CYP4A22	284541	broad.mit.edu	37	1	47606478	47606478	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:47606478G>A	uc001cqv.1	+	2	273	c.222G>A	c.(220-222)CGG>CGA	p.R74R	CYP4A22_uc009vyo.2_Silent_p.R74R|CYP4A22_uc009vyp.2_Silent_p.R74R	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	74						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						AGCTACAACGGATTCAGGAAC	0.483													25	84					0	0	0.008361	0	0
BSND	7809	broad.mit.edu	37	1	55474256	55474256	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:55474256C>T	uc001cye.2	+	4	1161	c.918C>T	c.(916-918)CTC>CTT	p.L306L		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	306	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						CCGGGGACCTCCTCCCGGACA	0.567													13	65					0	0	0.003163	0	0
C8A	731	broad.mit.edu	37	1	57373700	57373700	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:57373700G>A	uc001cyo.2	+	9	1426	c.1294G>A	c.(1294-1296)GGT>AGT	p.G432S		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	432	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						TGGCTGGAGCGGTGGCTTGGC	0.493													19	48					0	0	0.012319	0	0
CYP2J2	1573	broad.mit.edu	37	1	60359334	60359334	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:60359334G>A	uc001czq.2	-	9	1503	c.1498C>T	c.(1498-1500)CCT>TCT	p.P500S		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	500					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					TACACCTGAGGAACAGCGCAG	0.468													76	318					0	0	0.014410	0	0
INADL	10207	broad.mit.edu	37	1	62349956	62349956	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:62349956C>T	uc001dab.2	+	22	3121	c.3007C>T	c.(3007-3009)CCT>TCT	p.P1003S	INADL_uc009waf.1_Missense_Mutation_p.P1003S|INADL_uc001daa.2_Missense_Mutation_p.P1003S|INADL_uc001dad.3_Missense_Mutation_p.P700S|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1003					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CATTGACCTTCCTGTTGTGGC	0.463													33	100					0	0	0.004878	0	0
LEPR	3953	broad.mit.edu	37	1	66083654	66083654	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:66083654C>T	uc001dci.2	+	16	2422	c.2220C>T	c.(2218-2220)ATC>ATT	p.I740I	LEPR_uc001dcg.2_Silent_p.I740I|LEPR_uc001dch.2_Silent_p.I740I|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Silent_p.I740I|LEPR_uc001dck.2_Silent_p.I740I	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	740	Extracellular (Potential).|Fibronectin type-III 4.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CAGTAAATATCGTGCAGTCAC	0.303													13	48					0	0	0.002450	0	0
LRRC7	57554	broad.mit.edu	37	1	70291501	70291501	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:70291501C>T	uc001dep.2	+	3	408	c.378C>T	c.(376-378)CCC>CCT	p.P126P	LRRC7_uc001deo.1_Silent_p.P164P|LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	126	LRR 5.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GTGTCAATCCCATTTCTAAGT	0.264													11	48					0	0	0.010729	0	0
C1orf173	127254	broad.mit.edu	37	1	75065508	75065508	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:75065508C>T	uc001dgg.2	-	11	1816	c.1597G>A	c.(1597-1599)GAT>AAT	p.D533N	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.D327N	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	533	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCTTTTTTATCATCCAAAGGT	0.398													21	136					0	0	0.014323	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77334210	77334210	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:77334210T>C	uc001dhi.2	+	2	219	c.44T>C	c.(43-45)CTC>CCC	p.L15P	ST6GALNAC5_uc010ori.1_Missense_Mutation_p.L15P|ST6GALNAC5_uc009wbw.2_RNA	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E	15	Helical; Signal-anchor for type II membrane protein; (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						TGTTTAGCGCTCACCACCATG	0.567													12	52					0	0	0.001855	0	0
NEXN	91624	broad.mit.edu	37	1	78383316	78383316	+	Silent	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:78383316A>G	uc001dic.3	+	3	390	c.93A>G	c.(91-93)GTA>GTG	p.V31V	NEXN_uc001dia.3_Silent_p.V31V|NEXN_uc009wcb.1_Intron|NEXN_uc001dib.3_Intron|NEXN_uc001did.1_5'Flank|NEXN_uc001dif.1_5'Flank	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	31					regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		AGGGTGATGTAAAGGATAAGT	0.343													10	41					0	0	0.010729	0	0
CCDC18	343099	broad.mit.edu	37	1	93691891	93691891	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:93691891T>C	uc001dpq.2	+	17	2699	c.2531T>C	c.(2530-2532)GTT>GCT	p.V844A	CCDC18_uc009wdl.1_Missense_Mutation_p.V361A	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	725	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		CCTGCTTAGGTTAGGCAACTA	0.239													11	40					0	0	0.001855	0	0
SORT1	6272	broad.mit.edu	37	1	109870131	109870131	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:109870131G>A	uc001dxm.1	-	12	1513	c.1464C>T	c.(1462-1464)GTC>GTT	p.V488V	SORT1_uc010ovi.1_Silent_p.V351V	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	488	Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		CATGAGCAATGACAATGCCTA	0.502													10	41					0	0	0.008291	0	0
CSDE1	7812	broad.mit.edu	37	1	115263252	115263252	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:115263252A>C	uc001efk.2	-	17	2426	c.1960T>G	c.(1960-1962)TTC>GTC	p.F654V	CSDE1_uc001efi.2_Missense_Mutation_p.F700V|CSDE1_uc001efj.2_RNA|CSDE1_uc001efl.2_Missense_Mutation_p.F623V|CSDE1_uc001efm.2_Missense_Mutation_p.F669V|CSDE1_uc009wgv.2_Missense_Mutation_p.F654V|CSDE1_uc001efn.2_Missense_Mutation_p.F623V	NM_001007553	NP_001007554	O75534	CSDE1_HUMAN	upstream of NRAS isoform 1	654	CSD 8.				male gonad development|regulation of transcription, DNA-dependent	cytoplasm	DNA binding|protein binding|RNA binding			ovary(1)	1	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;2.21e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CACAATTGGAACTTGACGCTC	0.498													30	90					0	0	0.012213	0	0
TBX15	6913	broad.mit.edu	37	1	119427506	119427506	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:119427506C>T	uc001ehl.1	-	8	1655	c.1340G>A	c.(1339-1341)GGA>GAA	p.G447E	TBX15_uc009whj.1_Missense_Mutation_p.G271E	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	553						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CTGCCTCTCTCCAAAGGCCCC	0.537													10	30					0	0	0.006214	0	0
TBX15	6913	broad.mit.edu	37	1	119467391	119467391	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:119467391G>A	uc001ehl.1	-	4	568	c.253C>T	c.(253-255)CCT>TCT	p.P85S		NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	191	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GGGGGCACAGGGGAATCAGCA	0.398													30	163					0	0	0.012213	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059391	152059391	+	Missense_Mutation	SNP	C	T	T	rs140526562		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:152059391C>T	uc001ezo.1	-	3	832	c.767G>A	c.(766-768)GGA>GAA	p.G256E		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	256							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TGCCAAGTTTCCTTCCTGTTC	0.428													68	91					0	0	0.014410	0	0
LCE1F	353137	broad.mit.edu	37	1	152748928	152748928	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:152748928G>A	uc010pdv.1	+	1	81	c.81G>A	c.(79-81)CCG>CCA	p.P27P		NM_178354	NP_848131	Q5T754	LCE1F_HUMAN	late cornified envelope 1F	27	Pro-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			gccccacaccgaagtgccccc	0.393													36	64					0	0	0.003271	0	0
S100A7L2	645922	broad.mit.edu	37	1	153409566	153409566	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:153409566C>T	uc010pdx.1	-	3	385	c.307G>A	c.(307-309)GGA>AGA	p.G103R		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGTGCCACTCCATGCATTATC	0.468													74	105					0	0	0.014410	0	0
FCRL2	79368	broad.mit.edu	37	1	157738306	157738306	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:157738306C>T	uc001fre.2	-	5	840	c.781G>A	c.(781-783)GAG>AAG	p.E261K	FCRL2_uc001frd.2_5'Flank|FCRL2_uc010phz.1_Missense_Mutation_p.E261K|FCRL2_uc009wsp.2_Intron	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	261	Ig-like C2-type 3.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GCTGGGATCTCCAGCTCTGCT	0.522													26	155					0	0	0.009535	0	0
CD1E	913	broad.mit.edu	37	1	158323823	158323823	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:158323823G>A	uc001fse.2	+	1	284	c.45G>A	c.(43-45)GGG>GGA	p.G15G	CD1E_uc010pid.1_Intron|CD1E_uc010pie.1_Silent_p.G15G|CD1E_uc010pif.1_Silent_p.G15G|CD1E_uc001fsd.2_Silent_p.G15G|CD1E_uc001fsk.2_Silent_p.G15G|CD1E_uc001fsj.2_Silent_p.G15G|CD1E_uc001fsc.2_Silent_p.G15G|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Silent_p.G15G|CD1E_uc001fsf.2_Silent_p.G15G|CD1E_uc001fry.2_Silent_p.G15G|CD1E_uc001fsg.2_Silent_p.G15G|CD1E_uc001fsh.2_Silent_p.G15G|CD1E_uc001fsi.2_Silent_p.G15G|CD1E_uc009wsv.2_Silent_p.G15G|CD1E_uc001frz.2_Silent_p.G15G|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	15					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					GCTGTCCTGGGGAAAATACAG	0.542													30	43					0	0	0.009535	0	0
AIM2	9447	broad.mit.edu	37	1	159035960	159035960	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:159035960C>T	uc001ftj.1	-	4	801	c.556G>A	c.(556-558)GAA>AAA	p.E186K		NM_004833	NP_004824	O14862	AIM2_HUMAN	absent in melanoma 2	186	HIN-200.				cellular response to drug|immune response|interleukin-1 beta secretion	mitochondrion|nucleus				ovary(2)|pancreas(1)	3	all_hematologic(112;0.0429)					AAGAAGAATTCCTTTTCTGTA	0.368													46	63					0	0	0.014410	0	0
OR10J5	127385	broad.mit.edu	37	1	159505253	159505253	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:159505253G>A	uc010piw.1	-	1	545	c.545C>T	c.(544-546)CCA>CTA	p.P182L		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					TTTCATGACTGGGTAAATGTC	0.393													18	88					0	0	0.007413	0	0
FCRL6	343413	broad.mit.edu	37	1	159784034	159784034	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:159784034G>A	uc001fud.3	+	8	1141	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	FCRL6_uc001fuc.2_Missense_Mutation_p.E374K|FCRL6_uc009wsz.1_Missense_Mutation_p.E272K|FCRL6_uc009wta.2_Missense_Mutation_p.E367K	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	367	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					AGGGAAAGATGAAGGTGTTGT	0.463													47	53					0	0	0.014410	0	0
ITLN1	55600	broad.mit.edu	37	1	160851957	160851957	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:160851957G>A	uc001fxc.2	-	4	311	c.195C>T	c.(193-195)ATC>ATT	p.I65I		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	65	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AGGTCTGGTAGATAACACCAT	0.577													13	54					0	0	0.003163	0	0
HSPA6	3310	broad.mit.edu	37	1	161495088	161495088	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:161495088A>T	uc001gap.2	+	2	1300	c.640A>T	c.(640-642)ATT>TTT	p.I214F	HSPA6_uc001gaq.2_Missense_Mutation_p.I214F	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	214					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GGTTCTCTCCATTGACGCTGG	0.587													14	51					0	0	0.003163	0	0
C1orf111	284680	broad.mit.edu	37	1	162343956	162343956	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:162343956C>T	uc001gbx.2	-	3	732	c.668G>A	c.(667-669)TGG>TAG	p.W223*		NM_182581	NP_872387	Q5T0L3	CA111_HUMAN	hypothetical protein LOC284680	223										ovary(1)	1	all_hematologic(112;0.15)		BRCA - Breast invasive adenocarcinoma(70;0.0938)			CTCCTTGCTCCAGAGGGCTTT	0.592													31	90					0	0	0.009535	0	0
ADCY10	55811	broad.mit.edu	37	1	167815256	167815256	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:167815256G>A	uc001ger.2	-	20	2981	c.2683C>T	c.(2683-2685)CGT>TGT	p.R895C	ADCY10_uc009wvk.2_Missense_Mutation_p.R803C|ADCY10_uc010plj.1_Missense_Mutation_p.R742C|ADCY10_uc009wvl.2_Missense_Mutation_p.R894C	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	895					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						GACAAGGAACGATAGTGCACC	0.458													12	63					0	0	0.001855	0	0
FMO3	2328	broad.mit.edu	37	1	171086285	171086285	+	Missense_Mutation	SNP	G	A	A	rs72549332		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:171086285G>A	uc001ghi.2	+	9	1413	c.1302G>A	c.(1300-1302)ATG>ATA	p.M434I	FMO3_uc001ghh.2_Missense_Mutation_p.M434I|FMO3_uc010pmb.1_Missense_Mutation_p.M414I|FMO3_uc010pmc.1_Missense_Mutation_p.M371I	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	434			M -> I (in TMAU; profoundly alters enzyme function).		xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TTGTTTATATGGATGAACTCT	0.453													41	64					0	0	0.014410	0	0
RASAL2	9462	broad.mit.edu	37	1	178426954	178426954	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:178426954C>T	uc001glr.2	+	12	2229	c.2104C>T	c.(2104-2106)CCT>TCT	p.P702S	RASAL2_uc001glq.2_Missense_Mutation_p.P843S|RASAL2_uc009wxc.2_Missense_Mutation_p.P216S	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	702					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						AAGTAGCCTTCCTAATGGTCG	0.498													44	53					0	0	0.014410	0	0
TDRD5	163589	broad.mit.edu	37	1	179620128	179620128	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:179620128G>A	uc001gnf.1	+	12	2177	c.1927G>A	c.(1927-1929)GAA>AAA	p.E643K	TDRD5_uc010pnp.1_Missense_Mutation_p.E643K|TDRD5_uc001gnh.1_Missense_Mutation_p.E198K	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	643					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						ATCCTCAAACGAAGATGTCTA	0.413													64	82					0	0	0.014410	0	0
ZNF648	127665	broad.mit.edu	37	1	182025717	182025717	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:182025717G>A	uc001goz.2	-	2	1637	c.1429C>T	c.(1429-1431)CCT>TCT	p.P477S		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	477	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGCGTGCAAGGAAAGGGCCTC	0.672													13	10					0	0	0.002450	0	0
CFH	3075	broad.mit.edu	37	1	196695755	196695755	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:196695755G>A	uc001gtj.3	+	13	2269	c.2029G>A	c.(2029-2031)GAG>AAG	p.E677K		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	677	Sushi 11.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TGTTGATGGAGAGTGGACAAC	0.294													13	81					0	0	0.003163	0	0
PPFIA4	8497	broad.mit.edu	37	1	203025528	203025528	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:203025528G>A	uc001gyz.2	+	5	1207	c.614G>A	c.(613-615)CGA>CAA	p.R205Q	PPFIA4_uc009xaj.2_Missense_Mutation_p.R836Q|PPFIA4_uc010pqf.1_Missense_Mutation_p.R418Q|PPFIA4_uc001gza.2_Missense_Mutation_p.R205Q|PPFIA4_uc001gzb.1_5'Flank	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	205					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						GAAGAGAACCGAGAGGATAAA	0.587													23	27					0	0	0.006320	0	0
NFASC	23114	broad.mit.edu	37	1	204949556	204949556	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:204949556G>A	uc001hbj.2	+	20	2563	c.2235G>A	c.(2233-2235)GAG>GAA	p.E745E	NFASC_uc010pra.1_Silent_p.E741E|NFASC_uc001hbi.2_Silent_p.E741E|NFASC_uc010prb.1_Silent_p.E756E|NFASC_uc010prc.1_Silent_p.E312E|NFASC_uc001hbk.1_Silent_p.E551E|NFASC_uc001hbl.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	745	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			ACAACATGGAGATCACGTGGA	0.602													4	32					0	0	0.001168	0	0
TATDN3	128387	broad.mit.edu	37	1	212969872	212969872	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:212969872C>T	uc001hjo.2	+	3	207	c.113C>T	c.(112-114)GCC>GTC	p.A38V	TATDN3_uc010ptj.1_Missense_Mutation_p.A38V|TATDN3_uc010ptk.1_Missense_Mutation_p.A38V|TATDN3_uc001hjp.2_Missense_Mutation_p.A38V|TATDN3_uc010ptl.1_Missense_Mutation_p.A38V|TATDN3_uc010ptm.1_5'UTR	NM_001042552	NP_001036017	Q17R31	TATD3_HUMAN	TatD DNase domain containing 3 isoform 1	38						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00699)|all cancers(67;0.0118)|GBM - Glioblastoma multiforme(131;0.0801)|Epithelial(68;0.104)		AATGTTGTGGCCCTTGTGGCA	0.254													41	39					0	0	0.014410	0	0
USH2A	7399	broad.mit.edu	37	1	216373131	216373131	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:216373131C>T	uc001hku.1	-	17	4036	c.3649G>A	c.(3649-3651)GAT>AAT	p.D1217N	USH2A_uc001hkv.2_Missense_Mutation_p.D1217N	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1217	Extracellular (Potential).|Fibronectin type-III 2.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACAGAAAAATCGTACTTGGCA	0.517										HNSCC(13;0.011)			44	50					0	0	0.010771	0	0
USH2A	7399	broad.mit.edu	37	1	216420526	216420526	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:216420526C>T	uc001hku.1	-	13	2597	c.2210G>A	c.(2209-2211)CGA>CAA	p.R737Q	USH2A_uc001hkv.2_Missense_Mutation_p.R737Q	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	737	Laminin EGF-like 4.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding	p.R737*(1)		ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATTAAAGCTTCGGAGAAATTT	0.383										HNSCC(13;0.011)			58	68					0	0	0.014410	0	0
FAM177B	400823	broad.mit.edu	37	1	222920367	222920367	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:222920367C>T	uc001hnt.2	+	4	451	c.185C>T	c.(184-186)TCC>TTC	p.S62F	uc001hnr.1_Intron|FAM177B_uc009xeb.2_RNA	NM_207468	NP_997351	A6PVY3	F177B_HUMAN	hypothetical protein LOC400823	62										ovary(1)	1						TCTAAACTTTCCTGGGGGCCC	0.353													39	35					0	0	0.014410	0	0
KIAA1804	84451	broad.mit.edu	37	1	233518133	233518133	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:233518133G>A	uc001hvt.3	+	10	3048	c.2787G>A	c.(2785-2787)AGG>AGA	p.R929R	KIAA1804_uc001hvu.3_Silent_p.R375R	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	929					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				ATCTGCCAAGGGAGGTCTCAC	0.582													31	75					0	0	0.003271	0	0
NID1	4811	broad.mit.edu	37	1	236157146	236157146	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:236157146C>T	uc001hxo.2	-	13	2656	c.2554G>A	c.(2554-2556)GAG>AAG	p.E852K	NID1_uc009xgd.2_Missense_Mutation_p.E719K|NID1_uc009xgc.2_5'UTR	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	852	Thyroglobulin type-1.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	TGTTCTCGCTCGTGCTGGCAC	0.632													8	27					0	0	0.004482	0	0
RYR2	6262	broad.mit.edu	37	1	237632406	237632406	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:237632406G>A	uc001hyl.1	+	17	1747	c.1627G>A	c.(1627-1629)GGA>AGA	p.G543R		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	543	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCTAATTAGAGGAAATCGTAA	0.373													10	61					0	0	0.010729	0	0
FMN2	56776	broad.mit.edu	37	1	240341279	240341279	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:240341279C>T	uc010pyd.1	+	3	2066	c.1841C>T	c.(1840-1842)TCA>TTA	p.S614L	FMN2_uc010pye.1_Missense_Mutation_p.S614L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	614					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TTGGACTATTCAGAAGGGCAG	0.438													9	52					0	0	0.004482	0	0
GREM2	64388	broad.mit.edu	37	1	240656377	240656377	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:240656377C>T	uc001hys.2	-	2	679	c.399G>A	c.(397-399)GTG>GTA	p.V133V		NM_022469	NP_071914	Q9H772	GREM2_HUMAN	gremlin 2 precursor	133	CTCK.				BMP signaling pathway	extracellular space	cytokine activity				0		all_cancers(173;0.0196)	OV - Ovarian serous cystadenocarcinoma(106;0.0123)			ACTCGAGCTCCACGAGGACGG	0.617													12	110					0	0	0.013537	0	0
ZNF669	79862	broad.mit.edu	37	1	247264612	247264612	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:247264612G>A	uc001ice.2	-	4	632	c.459C>T	c.(457-459)ATC>ATT	p.I153I	ZNF669_uc001icf.2_Silent_p.I67I	NM_024804	NP_079080	Q96BR6	ZN669_HUMAN	zinc finger protein 669 isoform 1	153	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(71;4.09e-05)|all_epithelial(71;6.72e-06)|Breast(184;0.0226)|Ovarian(71;0.0283)|all_lung(81;0.0488)|Lung NSC(105;0.053)		OV - Ovarian serous cystadenocarcinoma(106;0.00427)			GTCTCTGTACGATATGATTTC	0.328													71	96					0	0	0.014410	0	0
OR2W5	441932	broad.mit.edu	37	1	247655316	247655316	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:247655316G>A	uc001icz.1	+	1	887	c.887G>A	c.(886-888)GGA>GAA	p.G296E		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	296					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GAGGAACAAGGATGTGAAGGG	0.517													12	101					0	0	0.002450	0	0
OR2L3	391192	broad.mit.edu	37	1	248224678	248224678	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:248224678G>A	uc001idx.1	+	1	695	c.695G>A	c.(694-696)GGG>GAG	p.G232E	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TCTGCAGAAGGGAGGAAGAAA	0.468													98	107					0	0	0.014410	0	0
OR2T4	127074	broad.mit.edu	37	1	248524980	248524980	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:248524980C>T	uc001ieh.1	+	1	98	c.98C>T	c.(97-99)ACC>ATC	p.T33I		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	33	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCCAATATCACCTGGATGGCC	0.483													42	77					0	0	0.008740	0	0
SEPHS1	22929	broad.mit.edu	37	10	13386800	13386801	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:13386800_13386801GG>AA	uc001imk.2	-	2	509_510	c.150_151CC>TT	c.(148-153)TTCCAA>TTTTAA	p.Q51*	SEPHS1_uc001imi.2_Nonsense_Mutation_p.Q51*|SEPHS1_uc001imj.2_Nonsense_Mutation_p.Q51*|SEPHS1_uc010qbt.1_Intron|SEPHS1_uc009xje.2_Nonsense_Mutation_p.Q51*	NM_012247	NP_036379	P49903	SPS1_HUMAN	selenophosphate synthetase 1	51					protein modification process		ATP binding|GTP binding|selenide, water dikinase activity			skin(1)	1						TCATCTTCTTGGAAGTGGTTCT	0.485													48	135					0	0	0.004672	0	0
CUBN	8029	broad.mit.edu	37	10	17088027	17088027	+	Silent	SNP	G	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:17088027G>T	uc001ioo.2	-	24	3448	c.3396C>A	c.(3394-3396)ATC>ATA	p.I1132I		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1132	CUB 6.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TATGAGAGATGATTGTTGGGG	0.373													36	77					1.42033e-22	1.4567e-22	0.004289	1	0
GPR158	57512	broad.mit.edu	37	10	25878021	25878021	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:25878021G>A	uc001isj.2	+	8	1899	c.1839G>A	c.(1837-1839)ATG>ATA	p.M613I		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	613	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CCCGCTATATGGCTGTTGCAG	0.403													21	52					0	0	0.003330	0	0
APBB1IP	54518	broad.mit.edu	37	10	26825140	26825140	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:26825140G>A	uc001iss.2	+	10	1359	c.1038G>A	c.(1036-1038)AAG>AAA	p.K346K	APBB1IP_uc009xks.1_Silent_p.K346K	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	346	PH.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						CCAAAGGAAAGACTAAGGTCA	0.328													34	73					0	0	0.006230	0	0
ARMC4	55130	broad.mit.edu	37	10	28101451	28101451	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:28101451C>T	uc009xky.2	-	20	3223	c.3125G>A	c.(3124-3126)AGA>AAA	p.R1042K	ARMC4_uc010qds.1_Missense_Mutation_p.D608N|ARMC4_uc010qdt.1_Missense_Mutation_p.R734K|ARMC4_uc001itz.2_Missense_Mutation_p.R1042K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	1042							binding			ovary(4)|skin(2)	6						TCAAGTGTATCTTGCCTTCTC	0.458													22	70					0	0	0.003954	0	0
ARMC4	55130	broad.mit.edu	37	10	28229730	28229730	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:28229730G>A	uc009xky.2	-	13	1846	c.1748C>T	c.(1747-1749)GCT>GTT	p.A583V	ARMC4_uc010qds.1_Missense_Mutation_p.A108V|ARMC4_uc010qdt.1_Missense_Mutation_p.A275V|ARMC4_uc001itz.2_Missense_Mutation_p.A583V|ARMC4_uc010qdu.1_Missense_Mutation_p.A275V	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	583							binding			ovary(4)|skin(2)	6						GTCTAGTAGAGCAACCTATAA	0.448													12	57					0	0	0.002450	0	0
ZNF438	220929	broad.mit.edu	37	10	31137987	31137987	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:31137987G>A	uc010qdz.1	-	7	1782	c.1347C>T	c.(1345-1347)TCC>TCT	p.S449S	ZNF438_uc001ivn.2_Silent_p.S400S|ZNF438_uc010qdy.1_Silent_p.S439S|ZNF438_uc001ivo.3_Silent_p.S13S|ZNF438_uc009xlg.2_Silent_p.S449S|ZNF438_uc001ivp.3_Silent_p.S439S|ZNF438_uc010qea.1_Silent_p.S449S|ZNF438_uc010qeb.1_Silent_p.S449S|ZNF438_uc010qec.1_Silent_p.S13S	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	449					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				GAGAAGCCAGGGAGGCCAAAG	0.453													16	34					0	0	0.006122	0	0
RBP3	5949	broad.mit.edu	37	10	48390152	48390152	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:48390152G>A	uc001jez.2	-	1	840	c.726C>T	c.(724-726)ATC>ATT	p.I242I		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	242	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGATGTGCGCGATGTCCTCGG	0.647													19	21					0	0	0.008871	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49658879	49658879	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:49658879G>A	uc001jgt.2	-	9	1590	c.1293C>T	c.(1291-1293)TCC>TCT	p.S431S	ARHGAP22_uc001jgs.2_Silent_p.S341S|ARHGAP22_uc001jgu.2_Silent_p.S447S|ARHGAP22_uc010qgl.1_Silent_p.S388S|ARHGAP22_uc010qgm.1_Silent_p.S437S|ARHGAP22_uc001jgv.2_Silent_p.S129S|ARHGAP22_uc001jgr.2_Silent_p.S148S	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	431	Ser-rich.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						GCTGCCGGAAGGAGGACTTCC	0.697													4	11					0	0	0.001168	0	0
AGAP6	414189	broad.mit.edu	37	10	51769427	51769428	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:51769427_51769428CC>TT	uc001jix.3	+	8	1940_1941	c.1542_1543CC>TT	c.(1540-1545)TCCCGT>TCTTGT	p.R515C		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	515					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						CCCACCTTTCCCGTGTGCGATC	0.525													68	177					0	0	0.004672	0	0
A1CF	29974	broad.mit.edu	37	10	52573681	52573681	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:52573681C>T	uc001jjj.2	-	10	1471	c.1283G>A	c.(1282-1284)GGG>GAG	p.G428E	A1CF_uc010qhn.1_Missense_Mutation_p.G428E|A1CF_uc001jji.2_Missense_Mutation_p.G420E|A1CF_uc001jjh.2_Missense_Mutation_p.G428E|A1CF_uc010qho.1_Missense_Mutation_p.G436E|A1CF_uc009xov.2_Missense_Mutation_p.G420E	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	428					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GAGCTCCATCCCAGGTAAAAT	0.463													30	91					0	0	0.004289	0	0
A1CF	29974	broad.mit.edu	37	10	52575901	52575901	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:52575901C>T	uc001jjj.2	-	9	1194	c.1006G>A	c.(1006-1008)GAT>AAT	p.D336N	A1CF_uc010qhn.1_Missense_Mutation_p.D344N|A1CF_uc001jji.2_Missense_Mutation_p.D336N|A1CF_uc001jjh.2_Missense_Mutation_p.D344N|A1CF_uc010qho.1_Missense_Mutation_p.D344N|A1CF_uc009xov.2_Missense_Mutation_p.D336N	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	336					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GTGGTGGGATCATAAACTTGG	0.517													11	46					0	0	0.013537	0	0
PCDH15	65217	broad.mit.edu	37	10	55582906	55582906	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:55582906G>A	uc001jju.1	-	33	4975	c.4580C>T	c.(4579-4581)CCC>CTC	p.P1527L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.P1524L|PCDH15_uc010qhw.1_Missense_Mutation_p.P1487L|PCDH15_uc010qhx.1_Missense_Mutation_p.P1458L|PCDH15_uc010qhy.1_Missense_Mutation_p.P1534L|PCDH15_uc010qhz.1_Missense_Mutation_p.P1529L|PCDH15_uc010qia.1_Missense_Mutation_p.P1507L|PCDH15_uc010qib.1_Missense_Mutation_p.P1504L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1527	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTTATAAAGGGGATTATGGGC	0.368										HNSCC(58;0.16)			19	95					0	0	0.007413	0	0
ANK3	288	broad.mit.edu	37	10	61834560	61834560	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:61834560C>T	uc001jky.2	-	37	6271	c.6079G>A	c.(6079-6081)GAT>AAT	p.D2027N	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2027					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AAGTTATAATCCTTTTCGGAG	0.428													25	85					0	0	0.003330	0	0
TMEM26	219623	broad.mit.edu	37	10	63170284	63170284	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:63170284G>A	uc001jlo.2	-	6	1272	c.903C>T	c.(901-903)CTC>CTT	p.L301L	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlp.1_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	301	Helical; (Potential).					integral to membrane					0	Prostate(12;0.0112)					CCAAGCGGTAGAGTTGCAACA	0.517													26	77					0	0	0.007291	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687178	68687178	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:68687178C>T	uc001jmz.1	+	2	1054	c.504C>T	c.(502-504)TCC>TCT	p.S168S	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Silent_p.S168S	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	168	Extracellular (Potential).|LRR 5.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GGTCTAACTCCCTGAGAACCA	0.483													28	80					0	0	0.006320	0	0
CTNNA3	29119	broad.mit.edu	37	10	68979487	68979487	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:68979487C>T	uc009xpn.1	-	6	844	c.721G>A	c.(721-723)GTT>ATT	p.V241I	CTNNA3_uc001jmw.2_Missense_Mutation_p.V241I|CTNNA3_uc001jmx.3_Missense_Mutation_p.V241I|CTNNA3_uc009xpo.1_Missense_Mutation_p.V101I|CTNNA3_uc001jna.2_Missense_Mutation_p.V253I	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	241					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TCTTCACAAACTGTGTCCTTG	0.458													31	101					0	0	0.009535	0	0
SPOCK2	9806	broad.mit.edu	37	10	73826873	73826873	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:73826873C>T	uc001jso.1	-	8	1160	c.715G>A	c.(715-717)GAC>AAC	p.D239N	SPOCK2_uc001jsp.2_Missense_Mutation_p.D239N	NM_014767	NP_055582	Q92563	TICN2_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	239					extracellular matrix organization|regulation of cell differentiation|signal transduction|synapse assembly	proteinaceous extracellular matrix	calcium ion binding				0						AGGCTCTTGTCCAGCCCTGGG	0.612													9	11					0	0	0.004482	0	0
USP54	159195	broad.mit.edu	37	10	75276256	75276256	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:75276256G>A	uc001juo.2	-	18	3945	c.3928C>T	c.(3928-3930)CAA>TAA	p.Q1310*	USP54_uc010qkk.1_Nonsense_Mutation_p.Q492*|USP54_uc001juk.2_Nonsense_Mutation_p.Q398*|USP54_uc001jul.2_Nonsense_Mutation_p.Q398*|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	1310					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					TCTGTGTCTTGGTTCCAATGT	0.522													15	65					0	0	0.004990	0	0
KIAA0913	23053	broad.mit.edu	37	10	75553447	75553447	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:75553447C>T	uc009xrl.2	+	11	2447	c.2415C>T	c.(2413-2415)CCC>CCT	p.P805P	KIAA0913_uc001jve.2_Silent_p.P805P|KIAA0913_uc001jvf.2_Silent_p.P805P|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_Silent_p.P228P|KIAA0913_uc010qkr.1_Silent_p.P228P|KIAA0913_uc001jvj.2_Silent_p.P228P	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	805							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					CCAACCCACCCGACCTCAAGG	0.627													17	56					0	0	0.012319	0	0
NRG3	10718	broad.mit.edu	37	10	84744883	84744883	+	Missense_Mutation	SNP	G	A	A	rs117241349		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:84744883G>A	uc001kco.2	+	9	1640	c.1613G>A	c.(1612-1614)CGA>CAA	p.R538Q	NRG3_uc010qlz.1_Missense_Mutation_p.R537Q|NRG3_uc001kcp.2_Missense_Mutation_p.R341Q|NRG3_uc001kcq.2_Missense_Mutation_p.R188Q|NRG3_uc001kcr.2_Missense_Mutation_p.R212Q	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	562	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		AAAACCCAACGAAATACATCA	0.363													48	173					0	0	0.014410	0	0
OPN4	94233	broad.mit.edu	37	10	88415938	88415938	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:88415938G>A	uc001kdq.2	+	2	398	c.171G>A	c.(169-171)TGG>TGA	p.W57*	OPN4_uc001kdp.2_Nonsense_Mutation_p.W57*|OPN4_uc010qmk.1_Nonsense_Mutation_p.W57*	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	57	Extracellular (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						CTGCTGCCTGGGTCCCCCTCC	0.478													24	44					0	0	0.005443	0	0
LIPF	8513	broad.mit.edu	37	10	90438420	90438420	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:90438420A>G	uc001kfg.1	+	10	1345	c.1179A>G	c.(1177-1179)ATA>ATG	p.I393M	LIPF_uc001kfh.1_Missense_Mutation_p.I370M|LIPF_uc010qmt.1_Missense_Mutation_p.I403M|LIPF_uc010qmu.1_Missense_Mutation_p.I360M	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	393					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		TTTCTATGATATCAGAAGATA	0.308													16	26					0	0	0.006122	0	0
TNKS2	80351	broad.mit.edu	37	10	93590705	93590705	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:93590705C>T	uc001khp.2	+	10	1427	c.1130C>T	c.(1129-1131)CCC>CTC	p.P377L		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	377	ANK 7.				positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				TCTCCATATCCCAAAAGAAAG	0.303													8	20					0	0	0.006214	0	0
CYP2C9	1559	broad.mit.edu	37	10	96731877	96731877	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:96731877C>T	uc001kka.3	+	6	861	c.836C>T	c.(835-837)CCA>CTA	p.P279L	CYP2C9_uc009xut.2_Missense_Mutation_p.P277L	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	279					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CACAACCAACCATCTGAATTT	0.368													29	70					0	0	0.003755	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98383249	98383249	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:98383249G>A	uc001kmq.2	-	11	1843	c.1715C>T	c.(1714-1716)TCC>TTC	p.S572F	PIK3AP1_uc001kmo.2_Missense_Mutation_p.S171F|PIK3AP1_uc001kmp.2_Missense_Mutation_p.S394F	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	572						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		GCTCTCTGAGGAAACGTAGAA	0.363													67	223					0	0	0.014410	0	0
HPS1	3257	broad.mit.edu	37	10	100195401	100195401	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:100195401G>A	uc010qpf.1	-	4	492	c.246C>T	c.(244-246)GTC>GTT	p.V82V	HPS1_uc001kpi.1_Silent_p.V82V|HPS1_uc001kpj.1_Silent_p.V22V|HPS1_uc001kpk.1_Silent_p.V82V|HPS1_uc009xwb.2_RNA|HPS1_uc010qph.1_Silent_p.V82V|HPS1_uc001kpl.2_Silent_p.V82V	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	82					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		CCAGGTGAAGGACATACAGGA	0.532									Hermansky-Pudlak_syndrome				30	72					0	0	0.003755	0	0
COL17A1	1308	broad.mit.edu	37	10	105800169	105800169	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:105800169C>T	uc001kxr.2	-	40	2871	c.2702_splice	c.e40-1	p.E901_splice		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen						cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		AGGAAGGTTTCTGCAGAGGAA	0.413													19	51					0	0	0.010504	0	0
CUZD1	50624	broad.mit.edu	37	10	124591832	124591832	+	Missense_Mutation	SNP	G	A	A	rs139868556	byFrequency	TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:124591832G>A	uc001lgq.2	-	9	2118	c.1786C>T	c.(1786-1788)CGG>TGG	p.R596W	CUZD1_uc001lgp.2_Missense_Mutation_p.R315W|CUZD1_uc009yad.2_Missense_Mutation_p.R315W|CUZD1_uc009yaf.2_Missense_Mutation_p.R230W|CUZD1_uc001lgr.2_Missense_Mutation_p.R315W|CUZD1_uc010qty.1_Missense_Mutation_p.R315W|CUZD1_uc009yae.2_Missense_Mutation_p.R315W|CUZD1_uc001lgs.2_Missense_Mutation_p.R596W|CUZD1_uc010qtz.1_Missense_Mutation_p.R596W	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	596	Cytoplasmic (Potential).				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		TAGTCTGCCCGTTGATTTACA	0.443													46	187					0	0	0.014410	0	0
C10orf137	26098	broad.mit.edu	37	10	127412404	127412404	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:127412404C>T	uc001liq.1	+	4	702	c.409C>T	c.(409-411)CCC>TCC	p.P137S	C10orf137_uc001lin.2_Missense_Mutation_p.P137S|C10orf137_uc001lio.1_Missense_Mutation_p.P137S|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	137					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				CCTGAAAATTCCCTACAGCAA	0.343													35	104					0	0	0.007835	0	0
LRRC27	80313	broad.mit.edu	37	10	134175040	134175040	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:134175040C>A	uc010quw.1	+	9	1445	c.1250C>A	c.(1249-1251)CCA>CAA	p.P417Q	LRRC27_uc001llg.2_RNA|LRRC27_uc001lli.2_Missense_Mutation_p.P417Q|LRRC27_uc001llj.2_Missense_Mutation_p.P355Q|LRRC27_uc001llk.3_Missense_Mutation_p.P290Q	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a	417										ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		AAAATGAAACCAAGCAAAGAG	0.483													18	63					1.33834e-09	1.35716e-09	0.007413	1	0
PWWP2B	170394	broad.mit.edu	37	10	134218260	134218260	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:134218260C>T	uc001lll.3	+	2	285	c.256C>T	c.(256-258)CCT>TCT	p.P86S	PWWP2B_uc009ybe.2_Missense_Mutation_p.P86S	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	86	Pro-rich.										0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		CAGCTCCCCCCCTCCTGCCCG	0.751													11	32					0	0	0.002450	0	0
OR52K2	119774	broad.mit.edu	37	11	4470744	4470744	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:4470744G>A	uc001lyz.1	+	1	175	c.175G>A	c.(175-177)GAA>AAA	p.E59K		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGCCCTCCATGAACCCATGTA	0.527													49	141					0	0	0.014410	0	0
OR51D1	390038	broad.mit.edu	37	11	4661722	4661722	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:4661722C>T	uc010qyk.1	+	1	702	c.702C>T	c.(700-702)ATC>ATT	p.I234I		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATATCCTCATCCTGTGGGCTG	0.512													31	67					0	0	0.003755	0	0
OR52A1	23538	broad.mit.edu	37	11	5173125	5173125	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:5173125C>T	uc010qyy.1	-	1	475	c.475G>A	c.(475-477)GCC>ACC	p.A159T		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGCATGGGGCTACAAGAATA	0.463													31	64					0	0	0.012213	0	0
OR51I1	390063	broad.mit.edu	37	11	5461833	5461833	+	Silent	SNP	C	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:5461833C>A	uc010qze.1	-	1	912	c.912G>T	c.(910-912)GGG>GGT	p.G304G	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTTGAGAATCCCTTTGCGGA	0.463													21	75					1.1804e-14	1.20207e-14	0.003954	1	0
UBQLN3	50613	broad.mit.edu	37	11	5530692	5530692	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:5530692C>T	uc001may.1	-	2	183	c.97G>A	c.(97-99)GAG>AAG	p.E33K	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	33	Ubiquitin-like.									ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGAAATCCTCCTTGTCTTTG	0.537													26	94					0	0	0.008361	0	0
OR6A2	8590	broad.mit.edu	37	11	6816727	6816727	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:6816727C>T	uc001mes.1	-	1	413	c.213G>A	c.(211-213)GAG>GAA	p.E71E		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CATACCAGATCTCCAGAAAGG	0.438													28	76					0	0	0.007291	0	0
MICALCL	84953	broad.mit.edu	37	11	12315604	12315604	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:12315604G>A	uc001mkg.1	+	3	917	c.626G>A	c.(625-627)CGA>CAA	p.R209Q		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	209					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		GCTGGGGAGCGAATTTCCCAG	0.557													29	74					0	0	0.010818	0	0
ABCC8	6833	broad.mit.edu	37	11	17483345	17483345	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:17483345C>T	uc001mnc.2	-	5	733	c.607G>A	c.(607-609)GAG>AAG	p.E203K	ABCC8_uc010rcy.1_Missense_Mutation_p.E203K	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	203	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGCTTCACCTCCCTCGGTGTC	0.577													11	34					0	0	0.001855	0	0
MYBPC3	4607	broad.mit.edu	37	11	47356715	47356715	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:47356715G>A	uc001nfa.3	-	26	2838	c.2783C>T	c.(2782-2784)TCG>TTG	p.S928L		NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	927	Fibronectin type-III 2.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		CACCAGTATCGATGTGTGCTC	0.667													12	36					0	0	0.002450	0	0
OR4B1	119765	broad.mit.edu	37	11	48238551	48238551	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:48238551C>T	uc010rhs.1	+	1	190	c.190C>T	c.(190-192)CTG>TTG	p.L64L		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						CCTTAGCTGCCTGTCCTTGGT	0.498													31	141					0	0	0.010818	0	0
OR5T1	390155	broad.mit.edu	37	11	56043854	56043854	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:56043854G>A	uc001nio.1	+	1	740	c.740G>A	c.(739-741)AGA>AAA	p.R247K		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	247	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					GAAGGGAGGAGAAAAGTCTTC	0.438													49	138					0	0	0.014410	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757063	56757063	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:56757063C>T	uc010rjp.1	+	1	675	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TGGCCACCATCCTGAAAATGT	0.428													39	102					0	0	0.007835	0	0
PRG3	10394	broad.mit.edu	37	11	57147034	57147034	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:57147034C>T	uc001njv.1	-	3	418	c.308G>A	c.(307-309)GGA>GAA	p.G103E		NM_006093	NP_006084	Q9Y2Y8	PRG3_HUMAN	proteoglycan 3 precursor	103					basophil activation|histamine biosynthetic process|immune response|leukotriene biosynthetic process|negative regulation of translation|neutrophil activation|positive regulation of interleukin-8 biosynthetic process|superoxide anion generation		sugar binding				0						CCTTGGACTTCCCTGCACTTC	0.527													26	76					0	0	0.006320	0	0
OR1S1	219959	broad.mit.edu	37	11	57983140	57983140	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:57983140G>A	uc010rkc.1	+	1	924	c.924G>A	c.(922-924)AAG>AAA	p.K308K		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TGAGGAATAAGGATATGAAAG	0.433													36	127					0	0	0.004878	0	0
PLAC1L	219990	broad.mit.edu	37	11	59812219	59812219	+	Missense_Mutation	SNP	G	A	A	rs140171460		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:59812219G>A	uc001nol.2	+	3	504	c.319G>A	c.(319-321)GAA>AAA	p.E107K		NM_173801	NP_776162	Q86WS3	PLACL_HUMAN	placenta-specific 1-like precursor	107						extracellular region		p.E107K(1)		ovary(2)|skin(1)	3						TGACCCTCAGGAAATCCATTT	0.423													24	62					0	0	0.007291	0	0
TMEM132A	54972	broad.mit.edu	37	11	60702200	60702200	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:60702200C>T	uc001nqj.2	+	9	1993	c.1800C>T	c.(1798-1800)GTC>GTT	p.V600V	TMEM132A_uc001nqi.2_Silent_p.V601V|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	600	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GTGGCCGTGTCGTGGTGGGCC	0.667													4	18					0	0	0.009096	0	0
CD6	923	broad.mit.edu	37	11	60785271	60785271	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:60785271C>T	uc001nqq.2	+	11	1846	c.1623C>T	c.(1621-1623)AAC>AAT	p.N541N	CD6_uc001nqp.2_Silent_p.N541N|CD6_uc001nqr.2_Silent_p.N509N|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Silent_p.N500N	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	541	Cytoplasmic (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						CAACTGCCAACCCTGGACACT	0.488													15	94					0	0	0.003163	0	0
SYT7	9066	broad.mit.edu	37	11	61291958	61291958	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:61291958G>A	uc001nrv.2	-	6	675	c.669C>T	c.(667-669)GTC>GTT	p.V223V	SYT7_uc009ynr.2_Silent_p.V298V	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	223	C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						CATAGTCCAGGACTTGGAGGT	0.577													11	45					0	0	0.002450	0	0
DAGLA	747	broad.mit.edu	37	11	61488210	61488210	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:61488210C>T	uc001nsa.2	+	3	266	c.155C>T	c.(154-156)TCC>TTC	p.S52F		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	52	Extracellular (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		GAGGCCTGCTCCCTGAACCTG	0.642													18	77					0	0	0.007413	0	0
C11orf95	65998	broad.mit.edu	37	11	63533328	63533328	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:63533328C>T	uc010rmv.1	-	2	607	c.588G>A	c.(586-588)GAG>GAA	p.E196E	C11orf95_uc001nxr.2_Intron|C11orf95_uc001nxs.2_Silent_p.E82E	NM_001144936	NP_001138408	C9JLR9	CK095_HUMAN	hypothetical protein LOC65998	196	Glu-rich.					intracellular	zinc ion binding				0						cctcctcctcctcttcttcct	0.542													2	2					0	0	0.004672	0	0
GPHA2	170589	broad.mit.edu	37	11	64702576	64702576	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:64702576C>G	uc001oca.2	-	3	230	c.175G>C	c.(175-177)GGC>CGC	p.G59R		NM_130769	NP_570125	Q96T91	GPHA2_HUMAN	glycoprotein hormone alpha 2 precursor	59						extracellular region	hormone activity				0						TCACAGTGGCCCACACAGGCC	0.597													11	23					0	0	0.008291	0	0
MALAT1	378938	broad.mit.edu	37	11	65265627	65265627	+	RNA	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:65265627T>C	uc010roh.1	+	1		c.395T>C				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TAAACACTTCTGGGTGTGTCC	0.478													26	39					0	0	0.008361	0	0
NPAS4	266743	broad.mit.edu	37	11	66191958	66191958	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:66191958C>T	uc001ohx.1	+	7	1773	c.1597C>T	c.(1597-1599)CCT>TCT	p.P533S	NPAS4_uc010rpc.1_Missense_Mutation_p.P323S	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	533					transcription, DNA-dependent		DNA binding|signal transducer activity				0						ACAGCTGACTCCTCCCAGCAC	0.612													46	192					0	0	0.014410	0	0
FGF4	2249	broad.mit.edu	37	11	69588129	69588129	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:69588129C>T	uc001opg.1	-	3	888	c.569G>A	c.(568-570)GGG>GAG	p.G190E	FGF4_uc010rqj.1_3'UTR	NM_002007	NP_001998	P08620	FGF4_HUMAN	fibroblast growth factor 4 precursor	190					cell-cell signaling|chondroblast differentiation|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade	extracellular region	growth factor activity|heparin binding				0	Melanoma(5;1.89e-05)		LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)		Pentosan Polysulfate(DB00686)	CACTCGGTTCCCCTTCTTGGT	0.587													14	57					0	0	0.003163	0	0
INPPL1	3636	broad.mit.edu	37	11	71942228	71942228	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:71942228C>T	uc001osf.2	+	12	1639	c.1492C>T	c.(1492-1494)CGC>TGC	p.R498C	INPPL1_uc001osg.2_Missense_Mutation_p.R256C	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	498					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						TCTGGATTACCGCCCGGTGAG	0.597													39	82					0	0	0.011902	0	0
C2CD3	26005	broad.mit.edu	37	11	73849826	73849826	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:73849826C>T	uc001ouu.2	-	5	1121	c.894G>A	c.(892-894)AAG>AAA	p.K298K	C2CD3_uc001ouv.2_Silent_p.K298K	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	298						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					CACTGTGACTCTTGGCAACTG	0.428													40	84					0	0	0.011902	0	0
P4HA3	283208	broad.mit.edu	37	11	74000171	74000171	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:74000171C>T	uc001ouz.2	-	5	765	c.722G>A	c.(721-723)GGA>GAA	p.G241E	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.G241E	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	241	TPR.					endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					cgaaacatttcctgcctgtta	0.169													4	17					0	0	0.009096	0	0
FAT3	120114	broad.mit.edu	37	11	92087933	92087933	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:92087933C>T	uc001pdj.3	+	1	2672	c.2655C>T	c.(2653-2655)ATC>ATT	p.I885I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	885	Cadherin 8.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CAACTGGAATCGTTTATGTAG	0.448										TCGA Ovarian(4;0.039)			13	63					0	0	0.004007	0	0
CNTN5	53942	broad.mit.edu	37	11	99932099	99932099	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:99932099C>T	uc001pga.2	+	10	1475	c.1136C>T	c.(1135-1137)TCC>TTC	p.S379F	CNTN5_uc009ywv.1_Missense_Mutation_p.S379F|CNTN5_uc001pfz.2_Missense_Mutation_p.S379F|CNTN5_uc001pgb.2_Missense_Mutation_p.S305F	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	379	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GGAAAAAATTCCTTTCGTGGA	0.408													11	31					0	0	0.010729	0	0
GRIA4	2893	broad.mit.edu	37	11	105797560	105797560	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:105797560G>A	uc001pix.2	+	13	2387	c.1941G>A	c.(1939-1941)ACG>ACA	p.T647T	GRIA4_uc001piw.2_Silent_p.T647T	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	647	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	CTTTCCTGACGGTTGAGCGAA	0.418													28	64					0	0	0.006320	0	0
KBTBD3	143879	broad.mit.edu	37	11	105929626	105929626	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:105929626G>A	uc001pja.2	-	3	839	c.199C>T	c.(199-201)CGT>TGT	p.R67C	KBTBD3_uc001pjb.2_Missense_Mutation_p.R67C|KBTBD3_uc009yxm.2_Intron	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	63	BTB.									ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		AACACACAACGATGACACGGG	0.308													8	52					0	0	0.008291	0	0
DSCAML1	57453	broad.mit.edu	37	11	117335788	117335788	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:117335788C>T	uc001prh.1	-	17	3317	c.3315G>A	c.(3313-3315)ACG>ACA	p.T1105T		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1045	Extracellular (Potential).|Fibronectin type-III 2.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CGCTGTCCCCCGTGGCCTTCA	0.612													24	86					0	0	0.008361	0	0
DSCAML1	57453	broad.mit.edu	37	11	117342657	117342657	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:117342657G>A	uc001prh.1	-	15	3062	c.3060C>T	c.(3058-3060)ATC>ATT	p.I1020I		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	960	Extracellular (Potential).|Fibronectin type-III 1.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		AGTACATGCGGATGCTGTACA	0.572													16	55					0	0	0.006122	0	0
DSCAML1	57453	broad.mit.edu	37	11	117403167	117403167	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:117403167G>A	uc001prh.1	-	4	764	c.762C>T	c.(760-762)TCC>TCT	p.S254S	DSCAML1_uc001pri.1_Silent_p.S58S	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	194	Extracellular (Potential).|Ig-like C2-type 2.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		AGCGATAGGTGGAGAGGGCGT	0.552													20	47					0	0	0.010504	0	0
MLL	4297	broad.mit.edu	37	11	118342713	118342713	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:118342713C>T	uc001pta.2	+	3	862	c.839C>T	c.(838-840)CCT>CTT	p.P280L	MLL_uc001ptb.2_Missense_Mutation_p.P280L|MLL_uc001psz.1_Missense_Mutation_p.P313L|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	280					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AAACTCTCTCCTCTCAAGTCT	0.403			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								24	85					0	0	0.005443	0	0
NLRX1	79671	broad.mit.edu	37	11	119045723	119045723	+	Missense_Mutation	SNP	C	T	T	rs145673513	byFrequency	TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:119045723C>T	uc001pvu.2	+	6	1626	c.1411C>T	c.(1411-1413)CGG>TGG	p.R471W	NLRX1_uc010rzc.1_Missense_Mutation_p.R293W|NLRX1_uc001pvv.2_Missense_Mutation_p.R471W|NLRX1_uc001pvw.2_Missense_Mutation_p.R471W|NLRX1_uc001pvx.2_Missense_Mutation_p.R471W	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	471	Required for interaction with MAVS.|NACHT.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		CATCTTCCGTCGGGATGCCCT	0.612													16	38					0	0	0.003163	0	0
RNF26	79102	broad.mit.edu	37	11	119207129	119207129	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:119207129C>T	uc001pwh.2	+	1	1893	c.1297C>T	c.(1297-1299)CTC>TTC	p.L433F		NM_032015	NP_114404	Q9BY78	RNF26_HUMAN	ring finger protein 26	433							zinc ion binding			ovary(1)	1		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.8e-05)		CAATGTCTACCTCTGAAGCCT	0.622													15	49					0	0	0.003163	0	0
ASAM	79827	broad.mit.edu	37	11	122955364	122955364	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:122955364G>A	uc001pyt.2	-	3	603	c.244C>T	c.(244-246)CGA>TGA	p.R82*		NM_024769	NP_079045	Q9H6B4	CLMP_HUMAN	adipocyte-specific adhesion molecule precursor	82	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|tight junction					0		Breast(109;0.0025)|Lung NSC(97;0.0179)|all_lung(97;0.0182)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.73e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		AAGGCCACTCGGCCCTTCTGT	0.512													15	38					0	0	0.006122	0	0
APLP2	334	broad.mit.edu	37	11	130005576	130005576	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr11:130005576C>T	uc010sby.1	+	13	1960	c.1803C>T	c.(1801-1803)CCC>CCT	p.P601P	APLP2_uc001qfp.2_Silent_p.P601P|APLP2_uc001qfq.2_Silent_p.P545P|APLP2_uc010sbz.1_Silent_p.P389P|APLP2_uc001qfr.2_Silent_p.P367P|APLP2_uc001qfs.2_Silent_p.P372P|APLP2_uc001qfv.2_Silent_p.P492P	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	601	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		CGTTCCACCCCTTCCACCCCT	0.577													27	60					0	0	0.013726	0	0
IQSEC3	440073	broad.mit.edu	37	12	275031	275031	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:275031G>A	uc001qhw.1	+	8	2043	c.2037G>A	c.(2035-2037)ACG>ACA	p.T679T	IQSEC3_uc001qhu.1_Silent_p.T679T	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	982	Potential.|PH.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		CTGAGGTGACGGAGCTGGAGC	0.597													10	33					0	0	0.013537	0	0
WNK1	65125	broad.mit.edu	37	12	1006708	1006708	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:1006708C>T	uc001qio.3	+	25	6816	c.6309C>T	c.(6307-6309)ACC>ACT	p.T2103T	WNK1_uc001qip.3_Silent_p.T1855T|WNK1_uc001qir.3_Silent_p.T1276T|WNK1_uc009zdm.1_5'Flank|WNK1_uc009zdn.1_5'Flank	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	2103					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CTTTGTATACCAAACTGGGCA	0.448													8	41					0	0	0.004482	0	0
ATN1	1822	broad.mit.edu	37	12	7046114	7046114	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:7046114G>A	uc001qrw.1	+	5	1921	c.1684G>A	c.(1684-1686)GGC>AGC	p.G562S	ATN1_uc001qrx.1_Missense_Mutation_p.G562S	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	562	Involved in binding BAIAP2.				cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						CAGCCAAGCAGGCCCCAATGG	0.627													19	62					0	0	0.014323	0	0
NANOG	79923	broad.mit.edu	37	12	7945557	7945557	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:7945557C>T	uc009zfy.1	+	2	379	c.163C>T	c.(163-165)CCT>TCT	p.P55S		NM_024865	NP_079141	Q9H9S0	NANOG_HUMAN	Nanog homeobox	55					cell proliferation|embryo development|somatic stem cell maintenance	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				Kidney(36;0.0872)		CTCTCCTCTTCCTTCCTCCAT	0.373													36	128					0	0	0.013114	0	0
A2ML1	144568	broad.mit.edu	37	12	9013766	9013766	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:9013766G>A	uc001quz.3	+	28	3473	c.3375G>A	c.(3373-3375)AAG>AAA	p.K1125K	A2ML1_uc001qva.1_Silent_p.K705K|A2ML1_uc010sgm.1_Silent_p.K625K	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	969						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GGTGTCTCAAGAATTCGGCCA	0.448													34	66					0	0	0.012213	0	0
CLEC2B	9976	broad.mit.edu	37	12	10010225	10010225	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:10010225G>A	uc001qwn.2	-	3	742	c.85C>T	c.(85-87)CGA>TGA	p.R29*		NM_005127	NP_005118	Q92478	CLC2B_HUMAN	C-type lectin, superfamily member 2	29	Extracellular (Potential).					integral to plasma membrane	sugar binding				0						TGAGAATCTCGAGTTAGTTTA	0.318													12	24					0	0	0.002450	0	0
PLCZ1	89869	broad.mit.edu	37	12	18841097	18841097	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:18841097G>A	uc010sid.1	-	13	1708	c.1517C>T	c.(1516-1518)TCA>TTA	p.S506L	PLCZ1_uc001rdv.3_Missense_Mutation_p.S402L|PLCZ1_uc001rdw.3_Missense_Mutation_p.S247L|PLCZ1_uc001rdu.1_Missense_Mutation_p.S288L|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	506	C2.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					AATTACTAATGAATCACCTTT	0.318													33	102					0	0	0.006999	0	0
PDE3A	5139	broad.mit.edu	37	12	20833083	20833083	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:20833083C>T	uc001reh.1	+	16	3326	c.3304C>T	c.(3304-3306)CAA>TAA	p.Q1102*		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	1102					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CATAGAAAATCAATCCCTGGA	0.468													37	124					0	0	0.010771	0	0
ABCC9	10060	broad.mit.edu	37	12	21998572	21998572	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:21998572C>T	uc001rfi.1	-	24	3081	c.3061G>A	c.(3061-3063)GAG>AAG	p.E1021K	ABCC9_uc001rfh.2_Missense_Mutation_p.E1021K|ABCC9_uc001rfj.1_Missense_Mutation_p.E985K	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1021	Extracellular (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ATACTGTACTCCGATGTCCAT	0.383													20	53					0	0	0.004656	0	0
ARNTL2	56938	broad.mit.edu	37	12	27529307	27529307	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:27529307A>T	uc001rht.1	+	4	331	c.313A>T	c.(313-315)ATG>TTG	p.M105L	ARNTL2_uc001rhw.2_Intron|ARNTL2_uc010sjp.1_Intron|ARNTL2_uc001rhu.1_Intron|ARNTL2_uc009zji.1_Missense_Mutation_p.M71L|ARNTL2_uc001rhv.1_Intron	NM_020183	NP_064568	Q8WYA1	BMAL2_HUMAN	aryl hydrocarbon receptor nuclear	105					circadian rhythm|entrainment of circadian clock|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|skin(1)	2	Colorectal(261;0.0847)|Lung SC(9;0.184)					CCAAGTTAAAATGAAGGCCTT	0.398													26	57					0	0	0.012213	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48134791	48134791	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:48134791C>T	uc009zkp.2	-	19	2270	c.1830G>A	c.(1828-1830)GTG>GTA	p.V610V	uc001rpv.2_RNA|RAPGEF3_uc001rpw.2_5'UTR|RAPGEF3_uc001rpx.2_Silent_p.V67V|RAPGEF3_uc010sln.1_Silent_p.V125V|RAPGEF3_uc001rpy.2_RNA|RAPGEF3_uc009zkq.2_Silent_p.V610V|RAPGEF3_uc001rpz.3_Silent_p.V652V	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	610					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		CAGCAGAGCCCACAGTGGGCC	0.647													9	15					0	0	0.004482	0	0
COL2A1	1280	broad.mit.edu	37	12	48391395	48391395	+	Silent	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:48391395A>G	uc001rqu.2	-	7	706	c.525T>C	c.(523-525)CTT>CTC	p.L175L	COL2A1_uc001rqv.2_Silent_p.L106L	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	175					axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	TTACTCCACCAAgaccagggg	0.428													8	22					0	0	0.004482	0	0
ZNF641	121274	broad.mit.edu	37	12	48737456	48737456	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:48737456C>T	uc001rrn.1	-	6	782	c.617G>A	c.(616-618)AGA>AAA	p.R206K	ZNF641_uc001rro.1_Missense_Mutation_p.R192K|ZNF641_uc010sls.1_Missense_Mutation_p.R183K	NM_152320	NP_689533	Q96N77	ZN641_HUMAN	zinc finger protein 641	206	Transactivation.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						GGATAACATTCTGGGAGGTTC	0.532													3	4					0	0	0.004672	0	0
KRT72	140807	broad.mit.edu	37	12	52986727	52986727	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:52986727C>T	uc001sar.2	-	3	737	c.651G>A	c.(649-651)GTG>GTA	p.V217V	KRT72_uc001saq.2_Silent_p.V217V|KRT72_uc010sns.1_Silent_p.V217V|KRT72_uc010snt.1_Silent_p.V29V	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	217	Coil 1B.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		TGTTAATCTCCACCTCATACC	0.393													18	64					0	0	0.008871	0	0
KRT77	374454	broad.mit.edu	37	12	53088463	53088463	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:53088463C>T	uc001saw.2	-	5	1056	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	KRT77_uc009zmi.2_Missense_Mutation_p.E101K	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	343	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)	1						GCAATCAGTTCATACTGGGTC	0.567													15	30					0	0	0.003163	0	0
OR6C75	390323	broad.mit.edu	37	12	55759259	55759259	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:55759259T>A	uc010spk.1	+	1	365	c.365T>A	c.(364-366)ATG>AAG	p.M122K		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						GACCGCTGCATGGCCATCTGC	0.448													13	31					0	0	0.001855	0	0
ITGA7	3679	broad.mit.edu	37	12	56088274	56088274	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:56088274C>T	uc001shh.2	-	17	2542	c.2322G>A	c.(2320-2322)GGG>GGA	p.G774G	ITGA7_uc001shg.2_Silent_p.G770G|ITGA7_uc010sps.1_Silent_p.G677G|ITGA7_uc009znw.2_Silent_p.G17G|ITGA7_uc009znx.2_Silent_p.G651G	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	814	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CAATGCTGATCCCGGAGGTGC	0.567													12	33					0	0	0.004007	0	0
SMARCC2	6601	broad.mit.edu	37	12	56583179	56583179	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:56583179G>A	uc001skb.2	-	1	173	c.67C>T	c.(67-69)CAG>TAG	p.Q23*	SMARCC2_uc001skd.2_Nonsense_Mutation_p.Q23*|SMARCC2_uc001ska.2_Nonsense_Mutation_p.Q23*|SMARCC2_uc001skc.2_Nonsense_Mutation_p.Q23*|SMARCC2_uc010sqf.1_5'UTR	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	23					chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			TTGTCGAACTGGGTCACGGTG	0.373													17	67					0	0	0.003954	0	0
HELB	92797	broad.mit.edu	37	12	66703601	66703601	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:66703601A>T	uc001sti.2	+	4	921	c.893A>T	c.(892-894)TAT>TTT	p.Y298F	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	298					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		TTAATAATGTATTCCAGACTG	0.393													33	110					0	0	0.013726	0	0
KERA	11081	broad.mit.edu	37	12	91449902	91449902	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:91449902G>A	uc001tbl.2	-	2	776	c.157C>T	c.(157-159)CCT>TCT	p.P53S		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	53	LRRNT.|Cys-rich.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						AAAGCAGTAGGAAAACTGGGT	0.383													13	61					0	0	0.002450	0	0
PLEKHG7	440107	broad.mit.edu	37	12	93139342	93139342	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:93139342G>A	uc001tcj.2	+	5	520	c.290G>A	c.(289-291)AGA>AAA	p.R97K		NM_001004330	NP_001004330	Q6ZR37	PKHG7_HUMAN	pleckstrin homology domain containing, family G	97	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1						CTGAGGCAGAGAGATGACTTT	0.388													31	98					0	0	0.003271	0	0
CCDC60	160777	broad.mit.edu	37	12	119968748	119968748	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:119968748G>A	uc001txe.2	+	13	1896	c.1431G>A	c.(1429-1431)GTG>GTA	p.V477V	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	477										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		AGATCCTGGTGAAACTGCAGA	0.498													27	62					0	0	0.006320	0	0
WDR66	144406	broad.mit.edu	37	12	122437850	122437850	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:122437850G>A	uc009zxk.2	+	20	3377	c.3235G>A	c.(3235-3237)GGT>AGT	p.G1079S		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	1079							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		CGTTACTAAAGGTAAGCACAT	0.502													20	31					0	0	0.012319	0	0
LRRC43	254050	broad.mit.edu	37	12	122674873	122674873	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:122674873C>T	uc009zxm.2	+	5	884	c.859C>T	c.(859-861)CCC>TCC	p.P287S	LRRC43_uc001ubw.3_Missense_Mutation_p.P102S|LRRC43_uc009zxn.2_Missense_Mutation_p.P48S	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	287	LRRCT.										0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		CACCGTGTCTCCCAATGAGAA	0.652													21	56					0	0	0.002780	0	0
TMEM132D	121256	broad.mit.edu	37	12	129559455	129559455	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:129559455G>A	uc009zyl.1	-	9	2593	c.2265C>T	c.(2263-2265)ATC>ATT	p.I755I	TMEM132D_uc001uia.2_Silent_p.I293I	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	755	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CCGCAGCAATGATAGGCCACT	0.473													27	81					0	0	0.005443	0	0
PIWIL1	9271	broad.mit.edu	37	12	130827617	130827617	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr12:130827617G>A	uc001uik.2	+	3	251	c.161G>A	c.(160-162)GGA>GAA	p.G54E	PIWIL1_uc001uij.1_Missense_Mutation_p.G54E	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	54					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		CGGCAGAGAGGAACAGCAGGA	0.443													15	30					0	0	0.002450	0	0
FGF9	2254	broad.mit.edu	37	13	22275467	22275467	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:22275467G>A	uc001uog.2	+	3	1357	c.520G>A	c.(520-522)GAA>AAA	p.E174K		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	174					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		GACCCCGAGAGAAGGGACTAG	0.423													14	59					0	0	0.004007	0	0
ATP12A	479	broad.mit.edu	37	13	25284731	25284731	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:25284731G>A	uc001upp.2	+	20	3084	c.2897G>A	c.(2896-2898)AGA>AAA	p.R966K	ATP12A_uc010aaa.2_Missense_Mutation_p.R972K	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	966	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GGTCTCTTCAGGTACTGCCTG	0.423													32	81					0	0	0.006230	0	0
RNF17	56163	broad.mit.edu	37	13	25367241	25367241	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:25367241G>A	uc001upr.2	+	10	1038	c.997G>A	c.(997-999)GAA>AAA	p.E333K	RNF17_uc010tdd.1_Missense_Mutation_p.E192K|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E333K|RNF17_uc001ups.2_Missense_Mutation_p.E272K|RNF17_uc001upq.1_Missense_Mutation_p.E333K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	333					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TAACAAAAAGGAACTTTCTTG	0.358													17	77					0	0	0.007413	0	0
WASF3	10810	broad.mit.edu	37	13	27255347	27255347	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:27255347C>T	uc001uqv.2	+	8	1098	c.873C>T	c.(871-873)GCC>GCT	p.A291A	WASF3_uc001uqw.2_Silent_p.A288A	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	291					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CCCCATCTGCCTCGGCGAGGC	0.701													23	58					0	0	0.003330	0	0
USPL1	10208	broad.mit.edu	37	13	31227350	31227350	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:31227350C>G	uc001utc.2	+	8	1736	c.1304C>G	c.(1303-1305)GCA>GGA	p.A435G	USPL1_uc001utd.2_Missense_Mutation_p.A106G|USPL1_uc001ute.1_Missense_Mutation_p.A106G	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	435					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		CAGCACTATGCATTTCATTTT	0.348													37	148					0	0	0.006999	0	0
EEF1DP3	196549	broad.mit.edu	37	13	32527436	32527436	+	RNA	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:32527436G>A	uc001utu.2	+	4		c.1194G>A			EEF1DP3_uc010tdv.1_Intron|uc001utv.2_RNA					Homo sapiens similar to hypothetical protein FLJ20897, mRNA (cDNA clone IMAGE:5267252).												0						CTTGCTGGAGGAGGAGATCAC	0.587													13	48					0	0	0.003163	0	0
KIAA0564	23078	broad.mit.edu	37	13	42263510	42263510	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:42263510C>T	uc001uyj.2	-	34	4181	c.4111G>A	c.(4111-4113)GTT>ATT	p.V1371I		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1371						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		GGAAAACCAACAACTATTGTA	0.363													11	44					0	0	0.013537	0	0
LMO7	4008	broad.mit.edu	37	13	76432095	76432095	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:76432095G>A	uc001vjv.2	+	27	4864	c.4104G>A	c.(4102-4104)ACG>ACA	p.T1368T	LMO7_uc010thv.1_3'UTR|LMO7_uc010thw.1_3'UTR|LMO7_uc001vjx.1_RNA	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	Error:Variant_position_missing_in_Q8WWI1_after_alignment						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		GCCTCCATACGAAAGCACTGT	0.388													25	65					0	0	0.012213	0	0
SLITRK6	84189	broad.mit.edu	37	13	86369385	86369385	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:86369385C>T	uc001vll.1	-	2	1718	c.1259G>A	c.(1258-1260)GGT>GAT	p.G420D	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	420	Extracellular (Potential).|LRR 8.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CAGGTGGTTACCATTTAGATA	0.353													8	25					0	0	0.006214	0	0
GPC5	2262	broad.mit.edu	37	13	93518536	93518536	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:93518536G>A	uc010tif.1	+	8	1929	c.1563G>A	c.(1561-1563)TGG>TGA	p.W521*		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	521						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				CCTCTACAGGGATGCCAGATG	0.428													18	68					0	0	0.012319	0	0
STK24	8428	broad.mit.edu	37	13	99127538	99127538	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:99127538G>A	uc001vnm.1	-	4	676	c.441C>T	c.(439-441)CTC>CTT	p.L147L	STK24_uc001vnn.1_Silent_p.L135L|STK24_uc010tim.1_Silent_p.L116L	NM_003576	NP_003567	Q9Y6E0	STK24_HUMAN	serine/threonine kinase 24 isoform a	147	Protein kinase.				cellular component disassembly involved in apoptosis|signal transduction	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			TCTCCGAATGGAGATAATCGA	0.393													15	48					0	0	0.007413	0	0
MYO16	23026	broad.mit.edu	37	13	109496834	109496834	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr13:109496834C>T	uc001vqt.1	+	10	1301	c.1175C>T	c.(1174-1176)CCC>CTC	p.P392L	MYO16_uc010agk.1_Missense_Mutation_p.P414L|MYO16_uc001vqu.1_Missense_Mutation_p.P192L	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	392					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TCCACCAAACCCGAGCAGGTA	0.393													20	57					0	0	0.002780	0	0
POTEG	404785	broad.mit.edu	37	14	19553800	19553800	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:19553800C>T	uc001vuz.1	+	1	436	c.384C>T	c.(382-384)TTC>TTT	p.F128F	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	128										ovary(1)	1						ACAGCGCTTTCATGGAGCCGA	0.597													11	488					0	0	0.007413	0	0
OR4N2	390429	broad.mit.edu	37	14	20295729	20295729	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:20295729G>A	uc010tkv.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCCTCCCTGGAAATTTTCTC	0.448													60	402					0	0	0.014410	0	0
SALL2	6297	broad.mit.edu	37	14	21991801	21991801	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:21991801G>A	uc001wbe.2	-	2	2343	c.2061C>T	c.(2059-2061)GCC>GCT	p.A687A	SALL2_uc010tly.1_Silent_p.A685A|SALL2_uc010tlz.1_Silent_p.A550A|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Silent_p.A552A|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	687							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		TCTGTGCCCGGGCAGCTGGAC	0.592													22	55					0	0	0.003954	0	0
AKAP6	9472	broad.mit.edu	37	14	33015385	33015385	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:33015385G>A	uc001wrq.2	+	4	1696	c.1526G>A	c.(1525-1527)CGA>CAA	p.R509Q	AKAP6_uc010aml.2_Missense_Mutation_p.R506Q	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	509					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		CCTCCATGCCGAACACCTAAA	0.453													21	50					0	0	0.012319	0	0
KIAA0831	22863	broad.mit.edu	37	14	55836573	55836573	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:55836573C>T	uc001xbx.1	-	10	1279	c.1243G>A	c.(1243-1245)GAA>AAA	p.E415K	FBXO34_uc001xbv.2_Intron|KIAA0831_uc001xbw.1_Missense_Mutation_p.E302K	NM_014924	NP_055739	Q6ZNE5	BAKOR_HUMAN	Barkor	415					autophagic vacuole assembly|positive regulation of autophagy	autophagic vacuole|endoplasmic reticulum|pre-autophagosomal structure membrane	protein binding				0						TCATCTGATTCTCCAGCAACT	0.537													20	55					0	0	0.003330	0	0
KIAA0586	9786	broad.mit.edu	37	14	58955403	58955403	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:58955403C>T	uc001xdv.3	+	23	3637	c.3364C>T	c.(3364-3366)CCA>TCA	p.P1122S	KIAA0586_uc010trr.1_Missense_Mutation_p.P1239S|KIAA0586_uc001xdt.3_Missense_Mutation_p.P1154S|KIAA0586_uc001xdu.3_Missense_Mutation_p.P1183S|KIAA0586_uc010trs.1_Missense_Mutation_p.P1113S|KIAA0586_uc010trt.1_Missense_Mutation_p.P1058S	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	1122										ovary(1)	1						GCCTCCACCTCCAGAGCCAGT	0.488													24	43					0	0	0.003330	0	0
C14orf39	317761	broad.mit.edu	37	14	60951769	60951769	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:60951769C>T	uc001xez.3	-	2	138	c.28G>A	c.(28-30)GAC>AAC	p.D10N	C14orf39_uc010apo.2_5'UTR	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	10										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		AAAAGTCTGTCCAAACTGACA	0.284													18	50					0	0	0.002780	0	0
PRKCH	5583	broad.mit.edu	37	14	62014569	62014569	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:62014569C>T	uc001xfn.2	+	13	2175	c.1870C>T	c.(1870-1872)CAT>TAT	p.H624Y	PRKCH_uc010tsa.1_Missense_Mutation_p.H463Y|PRKCH_uc010tsb.1_Missense_Mutation_p.H192Y|PRKCH_uc001xfo.2_RNA	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	624	AGC-kinase C-terminal.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		CCAGCTGAACCATCGCCAAAT	0.522													65	172					0	0	0.014410	0	0
FAM71D	161142	broad.mit.edu	37	14	67669881	67669881	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:67669881C>T	uc001xja.1	+	4	484	c.230C>T	c.(229-231)TCC>TTC	p.S77F	FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	77										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		ATCTGTTTTTCCAGCTCCACC	0.473													9	26					0	0	0.006214	0	0
FAM71D	161142	broad.mit.edu	37	14	67669922	67669922	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:67669922C>T	uc001xja.1	+	4	525	c.271C>T	c.(271-273)CAT>TAT	p.H91Y	FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	91										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		GCTACTGGCCCATCTGACACC	0.483													5	16					0	0	0.000602	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68250148	68250148	+	Silent	SNP	G	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:68250148G>T	uc001xka.2	-	21	3860	c.3721C>A	c.(3721-3723)CGG>AGG	p.R1241R	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Silent_p.R1241R	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1241					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		TGGCTTTGCCGGGATGAGCAA	0.592													26	65					5.77227e-19	5.90327e-19	0.008361	1	0
C14orf43	91748	broad.mit.edu	37	14	74188197	74188197	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:74188197G>A	uc001xot.2	-	11	3523	c.2740C>T	c.(2740-2742)CCA>TCA	p.P914S	C14orf43_uc001xos.2_Missense_Mutation_p.P179S|C14orf43_uc001xou.2_Missense_Mutation_p.P914S|C14orf43_uc010tud.1_Missense_Mutation_p.P914S|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	914					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		GGCACCCTTGGGAACTTTTGG	0.438													11	39					0	0	0.002450	0	0
LTBP2	4053	broad.mit.edu	37	14	75018996	75018996	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:75018996G>A	uc001xqa.2	-	6	1680	c.1293C>T	c.(1291-1293)ATC>ATT	p.I431I		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	431					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CCGGCTGCGGGATAGGCAGGT	0.662													15	45					0	0	0.002780	0	0
NRXN3	9369	broad.mit.edu	37	14	80130180	80130180	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:80130180G>A	uc001xun.2	+	14	2876	c.2385G>A	c.(2383-2385)GAG>GAA	p.E795E	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Silent_p.E163E|NRXN3_uc010asw.2_Silent_p.E163E|NRXN3_uc001xur.3_Silent_p.E163E	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1168	Extracellular (Potential).|Laminin G-like 6.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CCATCAAAGAGGAGAGAACCC	0.473													10	19					0	0	0.008291	0	0
TSHR	7253	broad.mit.edu	37	14	81609529	81609529	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:81609529A>T	uc001xvd.1	+	10	1283	c.1127A>T	c.(1126-1128)GAG>GTG	p.E376V		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	376	Extracellular (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	CCCCAGGAAGAGACTCTACAA	0.453			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						25	59					0	0	0.003330	0	0
ITPK1	3705	broad.mit.edu	37	14	93429102	93429102	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:93429102G>A	uc001ybg.2	-	6	746	c.457C>T	c.(457-459)CCA>TCA	p.P153S	ITPK1_uc001ybe.2_Missense_Mutation_p.P153S|ITPK1_uc001ybf.2_Missense_Mutation_p.P34S|ITPK1_uc001ybh.2_Missense_Mutation_p.P153S	NM_014216	NP_055031	Q13572	ITPK1_HUMAN	inositol 1,3,4-triphosphate 5/6 kinase isoform	153	ATP-grasp.				blood coagulation|inositol trisphosphate metabolic process|signal transduction	cytosol	ATP binding|hydrolase activity|inositol tetrakisphosphate 1-kinase activity|inositol-1,3,4-trisphosphate 5/6-kinase activity|isomerase activity|ligase activity|magnesium ion binding				0		all_cancers(154;0.077)|all_epithelial(191;0.247)		Epithelial(152;0.124)|all cancers(159;0.169)		GCACTGAATGGGAAAGTCAAG	0.597													27	68					0	0	0.003271	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102509004	102509004	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:102509004C>T	uc001yks.2	+	69	12596	c.12432C>T	c.(12430-12432)ATC>ATT	p.I4144I		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4144	AAA 6 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CGGGCCGCATCTTTGTGTTCG	0.577													15	44					0	0	0.008871	0	0
AMN	81693	broad.mit.edu	37	14	103394775	103394775	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:103394775G>A	uc001ymg.3	+	4	253	c.220G>A	c.(220-222)GAT>AAT	p.D74N	AMN_uc001ymh.3_Missense_Mutation_p.D20N	NM_030943	NP_112205	Q9BXJ7	AMNLS_HUMAN	amnionless protein precursor	74	Extracellular (Potential).				lipid metabolic process|lipoprotein metabolic process|multicellular organismal development	integral to membrane|plasma membrane					0				Colorectal(3;0.00739)|READ - Rectum adenocarcinoma(2;0.0336)|Epithelial(152;0.0363)|all cancers(159;0.147)	Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CCTGCCGCTGGATGGGGAACT	0.741													5	5					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	14	103708289	103708289	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:103708289C>T	uc001ymo.1	+	1		c.493C>T								full-length cDNA clone CS0DE012YF10 of Placenta of Homo sapiens (human).																		GGAACCTATTCCCTATGGATT	0.453													4	21					0	0	0.000602	0	0
ADAM6	8755	broad.mit.edu	37	14	106311939	106311939	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:106311939C>T	uc010tyt.1	-	3608		c.56984G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Missense_Mutation_p.V39I|uc001ysk.1_Missense_Mutation_p.V39I|uc001ysl.1_Missense_Mutation_p.V39I|uc001ysm.1_5'UTR|uc001ysn.1_5'UTR|uc001yso.1_5'UTR					Parts of antibodies, mostly variable regions.												0						CATGCCAGGACCACAGGGCTG	0.562													17	37					0	0	0.006122	0	0
ADAM6	8755	broad.mit.edu	37	14	106321636	106321636	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:106321636C>T	uc010tyt.1	-	3599		c.55760G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CCCCTGTGATCCACGCGGCAG	0.622													4	17					0	0	0.009096	0	0
ADAM6	8755	broad.mit.edu	37	14	106691718	106691718	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:106691718C>T	uc010tyt.1	-	754		c.20645G>A								Parts of antibodies, mostly variable regions.												0						TCAGGCTGTTCATTTGCAGAT	0.512													47	135					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106691761	106691761	+	RNA	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:106691761G>A	uc010tyt.1	-	754		c.20602C>T								Parts of antibodies, mostly variable regions.												0						TCTGGAGATGGTGAATCGGCC	0.527													69	187					0	0	0.014410	0	0
ACTC1	70	broad.mit.edu	37	15	35085524	35085524	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:35085524A>T	uc001ziu.1	-	3	619	c.376T>A	c.(376-378)TTT>ATT	p.F126I	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	126					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		AAGGTCTCAAACATGATCTGA	0.592													22	95					0	0	0.003330	0	0
ACTC1	70	broad.mit.edu	37	15	35085547	35085547	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:35085547C>T	uc001ziu.1	-	3	596	c.353G>A	c.(352-354)CGG>CAG	p.R118Q	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	118					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		CATCTTCTCCCGGTTGGCCTT	0.577													25	99					0	0	0.005443	0	0
BUB1B	701	broad.mit.edu	37	15	40476069	40476069	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:40476069G>A	uc001zkx.3	+	6	948	c.736G>A	c.(736-738)GGA>AGA	p.G246R	BUB1B_uc010ucl.1_Missense_Mutation_p.G109R	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	246					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		CATCCGTGTAGGAGGTGCTCT	0.388			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				14	38					0	0	0.004007	0	0
PLCB2	5330	broad.mit.edu	37	15	40594798	40594799	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:40594798_40594799GG>AA	uc001zld.2	-	4	544_545	c.243_244CC>TT	c.(241-246)CTCCGG>CTTTGG	p.R82W	PLCB2_uc010bbo.2_Missense_Mutation_p.R82W|PLCB2_uc010ucm.1_Missense_Mutation_p.R82W|PLCB2_uc001zle.3_Missense_Mutation_p.R82W	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	82					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		AAGACGTCCCGGAGCTTCTGGC	0.589													11	37					0	0	0.004672	0	0
DISP2	85455	broad.mit.edu	37	15	40661750	40661750	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:40661750G>A	uc001zlk.1	+	8	3526	c.3437G>A	c.(3436-3438)CGC>CAC	p.R1146H		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	1146					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		AAGGCAGGCCGCCCACGACCA	0.652													3	63					0	0	0.004672	0	0
DLL4	54567	broad.mit.edu	37	15	41228901	41228901	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:41228901G>A	uc001zng.1	+	9	2036	c.1716G>A	c.(1714-1716)TCG>TCA	p.S572S		NM_019074	NP_061947	Q9NR61	DLL4_HUMAN	delta-like 4 protein precursor	572	Cytoplasmic (Potential).				blood circulation|cell communication|cell differentiation|Notch receptor processing|Notch signaling pathway	integral to membrane|plasma membrane	calcium ion binding|Notch binding			breast(2)	2		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		ACAACTTGTCGGACTTCCAGA	0.587													12	50					0	0	0.001855	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42441939	42441939	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:42441939C>T	uc001zoz.2	-	11	1094	c.1031G>A	c.(1030-1032)GGA>GAA	p.G344E	PLA2G4F_uc001zoy.2_5'Flank|PLA2G4F_uc010bcr.2_Missense_Mutation_p.G95E|PLA2G4F_uc001zpa.2_Missense_Mutation_p.G95E|PLA2G4F_uc010bcs.2_Missense_Mutation_p.G131E	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	344	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		CTCACTCAATCCCAGCACTTG	0.572													10	16					0	0	0.008291	0	0
C15orf63	25764	broad.mit.edu	37	15	44093371	44093371	+	Silent	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:44093371A>G	uc001ztf.2	+	2	404	c.228A>G	c.(226-228)AAA>AAG	p.K76K	ELL3_uc001zsx.1_5'Flank|C15orf63_uc001ztb.2_Silent_p.K122K|SERINC4_uc001ztc.1_5'Flank|SERINC4_uc001ztd.1_5'Flank|SERINC4_uc010bds.1_5'Flank|SERINC4_uc001zte.1_5'Flank|C15orf63_uc001ztg.1_Intron	NM_016400	NP_057484	Q9NX55	HYPK_HUMAN	chromosome 15 open reading frame 63	76	Potential.										0						GGGAGCAGAAAGCCAAACAGG	0.473													19	56					0	0	0.002780	0	0
SPG11	80208	broad.mit.edu	37	15	44892813	44892813	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:44892813G>A	uc001ztx.2	-	21	3569	c.3538C>T	c.(3538-3540)CCA>TCA	p.P1180S	SPG11_uc010ueh.1_Missense_Mutation_p.P1180S|SPG11_uc010uei.1_Missense_Mutation_p.P1180S|SPG11_uc001zty.1_5'UTR	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1180	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		GAGAAATGTGGGAGATGACTC	0.353													36	89					0	0	0.004289	0	0
C15orf33	196951	broad.mit.edu	37	15	49860462	49860462	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:49860462G>A	uc001zxl.2	-	9	1021	c.727C>T	c.(727-729)CGA>TGA	p.R243*	C15orf33_uc001zxm.2_Intron	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	243										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		GCATCCTTTCGACTTAGAGGT	0.289													13	49					0	0	0.004007	0	0
MYO5A	4644	broad.mit.edu	37	15	52672077	52672077	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:52672077G>A	uc002aby.2	-	17	2285	c.2041C>T	c.(2041-2043)CTG>TTG	p.L681L	MYO5A_uc002abx.3_Silent_p.L681L|MYO5A_uc010uge.1_Silent_p.L550L	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	681	Myosin head-like.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		CATGCTCTCAGCTGCTGCACT	0.498													26	66					0	0	0.008361	0	0
UNC13C	440279	broad.mit.edu	37	15	54306371	54306371	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:54306371C>T	uc002ack.2	+	1	1271	c.1271C>T	c.(1270-1272)TCC>TTC	p.S424F		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	424					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATACCATCCTCCCAGACATAT	0.378													22	66					0	0	0.014323	0	0
CGNL1	84952	broad.mit.edu	37	15	57745899	57745899	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:57745899G>A	uc002aeg.2	+	7	2149	c.2073G>A	c.(2071-2073)ATG>ATA	p.M691I	CGNL1_uc010bfw.2_Missense_Mutation_p.M691I	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	691	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGGTGAAGATGGAACGGGAGC	0.527													4	29					0	0	0.000602	0	0
SMAD6	4091	broad.mit.edu	37	15	67004014	67004014	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:67004014C>T	uc002aqf.2	+	2	1749	c.826C>T	c.(826-828)CCA>TCA	p.P276S	SMAD6_uc010bhx.2_RNA|SMAD6_uc002aqg.2_Missense_Mutation_p.P15S	NM_005585	NP_005576	O43541	SMAD6_HUMAN	SMAD family member 6 isoform 1	276	Poly-Pro.				BMP signaling pathway|immune response|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of caspase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of SMAD protein complex assembly|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of S phase of mitotic cell cycle|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	cytosol|transcription factor complex	co-SMAD binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I activin receptor binding|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			skin(1)	1						AGAATCTCCGCCACCTCCCTA	0.542													37	115					0	0	0.007835	0	0
ITGA11	22801	broad.mit.edu	37	15	68628086	68628086	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:68628086G>A	uc002ari.2	-	12	1461	c.1374C>T	c.(1372-1374)ACC>ACT	p.T458T	ITGA11_uc010bib.2_Silent_p.T458T	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	458	FG-GAP 4.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	TGTTGTGCATGGTGAACAGGA	0.652													9	23					0	0	0.004482	0	0
PKM2	5315	broad.mit.edu	37	15	72511404	72511404	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:72511404A>T	uc002atx.1	-	2	276	c.35T>A	c.(34-36)TTC>TAC	p.F12Y	PKM2_uc010bit.1_Missense_Mutation_p.F17Y|PKM2_uc010uki.1_Missense_Mutation_p.F86Y|PKM2_uc002atv.1_Missense_Mutation_p.F47Y|PKM2_uc002atw.1_Missense_Mutation_p.F12Y|PKM2_uc002aty.1_Missense_Mutation_p.F12Y|PKM2_uc010ukj.1_Missense_Mutation_p.S28T|PKM2_uc010ukk.1_Missense_Mutation_p.F12Y|PKM2_uc010biu.1_Missense_Mutation_p.F33Y|PKM2_uc002atz.1_RNA	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	12					glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	GGTCTGAATGAAGGCAGTCCC	0.537													22	70					0	0	0.002780	0	0
CSPG4	1464	broad.mit.edu	37	15	75985519	75985519	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:75985519G>A	uc002baw.2	-	2	237	c.144C>T	c.(142-144)GAC>GAT	p.D48D		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	48	Extracellular (Potential).|Globular or compact configuration stabilized by disulfide bonds.|Laminin G-like 1.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GCAGGTCTATGTCGGTCAGAG	0.617													8	10					0	0	0.004482	0	0
TMC3	342125	broad.mit.edu	37	15	81650576	81650576	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:81650576G>A	uc002bgo.1	-	7	657	c.657C>T	c.(655-657)ATC>ATT	p.I219I	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Silent_p.I219I	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	219	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						CAGCTCTCCCGATCTTCCTCT	0.493													33	89					0	0	0.013726	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85055802	85055802	+	RNA	SNP	C	A	A	rs1727704		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:85055802C>A	uc002bkm.2	-	6		c.758G>T				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						GCCTCTCCTCCTGTTCACGTA	0.552													4	26					0.000602214	0.000608118	0.000602	1	0
AKAP13	11214	broad.mit.edu	37	15	86087057	86087057	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:86087057G>A	uc002blv.1	+	5	703	c.533G>A	c.(532-534)AGG>AAG	p.R178K	AKAP13_uc002blt.1_Missense_Mutation_p.R178K|AKAP13_uc002blu.1_Missense_Mutation_p.R178K	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	178					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GGACTGCTGAGGTTGACGTGG	0.547													12	31					0	0	0.002450	0	0
IGF1R	3480	broad.mit.edu	37	15	99500556	99500556	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr15:99500556G>A	uc002bul.2	+	21	4039	c.3989G>A	c.(3988-3990)GGC>GAC	p.G1330D	IGF1R_uc010bon.2_Missense_Mutation_p.G1329D	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	1330	Cytoplasmic (Potential).				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	AACGGCCCCGGCCCTGGGGTG	0.692													12	31					0	0	0.003163	0	0
RHBDF1	64285	broad.mit.edu	37	16	114705	114705	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:114705G>A	uc002cfl.3	-	6	388	c.240C>T	c.(238-240)ACC>ACT	p.T80T	RHBDF1_uc010uty.1_Silent_p.T103T|RHBDF1_uc010utz.1_Silent_p.T80T|RHBDF1_uc010bqo.1_RNA	NM_022450	NP_071895	Q96CC6	RHDF1_HUMAN	rhomboid family 1	80	Cytoplasmic (Potential).				cell migration|cell proliferation|negative regulation of protein secretion|protein transport|proteolysis|regulation of epidermal growth factor receptor signaling pathway|regulation of proteasomal protein catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity			ovary(1)|pancreas(1)	2		all_cancers(16;2.56e-05)|all_epithelial(16;0.000116)|Hepatocellular(780;0.0068)|Lung NSC(18;0.0795)|all_lung(18;0.159)				ACCTGCGGATGGTCTGTGTGA	0.627													49	134					0	0	0.014410	0	0
WDR24	84219	broad.mit.edu	37	16	739604	739604	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:739604C>T	uc002ciz.1	-	1	797	c.37G>A	c.(37-39)GGC>AGC	p.G13S		NM_032259	NP_115635	Q96S15	WDR24_HUMAN	WD repeat domain 24	75										ovary(1)|central_nervous_system(1)	2		Hepatocellular(780;0.0218)				AGCACGCTGCCACCCAGGGCT	0.662													8	24					0	0	0.004482	0	0
FLYWCH1	84256	broad.mit.edu	37	16	2987358	2987358	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:2987358C>T	uc002csd.2	+	7	2113	c.1750C>T	c.(1750-1752)CCC>TCC	p.P584S	FLYWCH1_uc002csb.2_Missense_Mutation_p.P583S|FLYWCH1_uc002csc.2_Missense_Mutation_p.P583S|FLYWCH1_uc010bsv.2_Missense_Mutation_p.P308S|FLYWCH1_uc002cse.2_Missense_Mutation_p.P39S	NM_032296	NP_115672	Q4VC44	FWCH1_HUMAN	FLYWCH-type zinc finger 1 isoform a	584						nucleus	DNA binding|metal ion binding				0						GGAGCACTTCCCCAACCTGGC	0.726													5	9					0	0	0.001984	0	0
CLDN9	9080	broad.mit.edu	37	16	3063852	3063852	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:3063852C>T	uc010uwo.1	+	1	1396	c.489C>T	c.(487-489)TCC>TCT	p.S163S		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	163	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGGGGGCCTCCCTCTACCTGG	0.711													5	19					0	0	0.000602	0	0
ABCC6	368	broad.mit.edu	37	16	16259745	16259745	+	Missense_Mutation	SNP	G	A	A	rs150583228		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:16259745G>A	uc002den.3	-	23	3078	c.3041C>T	c.(3040-3042)GCC>GTC	p.A1014V	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1014	Helical; Name=13; (By similarity).|ABC transmembrane type-1 2.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GGATGCCCGGGCCCCACCTAG	0.627													9	28					0	0	0.008291	0	0
UMOD	7369	broad.mit.edu	37	16	20352420	20352420	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:20352420G>A	uc002dgz.2	-	7	1699	c.1570C>T	c.(1570-1572)CAG>TAG	p.Q524*	UMOD_uc002dha.2_Nonsense_Mutation_p.Q524*|UMOD_uc002dhb.2_Nonsense_Mutation_p.Q557*	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	524	ZP.				cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						TACCTGTCCTGGATGATGAAG	0.318													6	25					0	0	0.001168	0	0
UQCRC2	7385	broad.mit.edu	37	16	21968752	21968752	+	Silent	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:21968752A>G	uc002djx.2	+	3	268	c.132A>G	c.(130-132)CCA>CCG	p.P44P	UQCRC2_uc002djy.2_Silent_p.P44P|UQCRC2_uc010bxa.2_RNA	NM_003366	NP_003357	P22695	QCR2_HUMAN	ubiquinol-cytochrome c reductase core protein II	44					aerobic respiration|oxidative phosphorylation|proteolysis|respiratory electron transport chain|transport		metalloendopeptidase activity|zinc ion binding			large_intestine(2)	2				GBM - Glioblastoma multiforme(48;0.0264)		CCAAGTTACCAAATGGCTTGG	0.358													19	39					0	0	0.010504	0	0
USP31	57478	broad.mit.edu	37	16	23080775	23080775	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:23080775G>A	uc002dll.2	-	16	2651	c.2651C>T	c.(2650-2652)TCA>TTA	p.S884L	USP31_uc002dlk.2_Missense_Mutation_p.S156L|USP31_uc010vca.1_Missense_Mutation_p.S187L|USP31_uc010bxm.2_Missense_Mutation_p.S172L	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	884	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		CGAATCCCCTGAAAATCGGGA	0.522													7	33					0	0	0.003080	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147192	26147192	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:26147192C>T	uc002dof.2	+	2	1386	c.994C>T	c.(994-996)CGA>TGA	p.R332*		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	332	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		GAGTGCCATTCGAATAGGGAT	0.552													59	161					0	0	0.014410	0	0
STX1B	112755	broad.mit.edu	37	16	31008892	31008892	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:31008892G>A	uc010cad.2	-	5	397	c.285C>T	c.(283-285)ATC>ATT	p.I95I	STX1B_uc010vfd.1_Silent_p.I95I	NM_052874	NP_443106	P61266	STX1B_HUMAN	syntaxin 1B	95	Potential.|Cytoplasmic (Potential).				intracellular protein transport|neurotransmitter transport|synaptic transmission	integral to plasma membrane	extracellular-glutamate-gated ion channel activity|SNAP receptor activity				0						TGCTTTGCTCGATCGCTGCGG	0.657													4	20					0	0	0.009096	0	0
ZNF646	9726	broad.mit.edu	37	16	31090166	31090166	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:31090166C>T	uc002eap.2	+	2	2810	c.2521C>T	c.(2521-2523)CCC>TCC	p.P841S		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	841	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						GAGCCACAGGCCCTGCCACCC	0.627													40	152					0	0	0.014410	0	0
ZNF646	9726	broad.mit.edu	37	16	31091383	31091383	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:31091383G>A	uc002eap.2	+	2	4027	c.3738G>A	c.(3736-3738)AAG>AAA	p.K1246K		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	1246	C2H2-type 21.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						TGTCCCTCAAGAACCACCGGC	0.647													15	40					0	0	0.004007	0	0
ITGAD	3681	broad.mit.edu	37	16	31421815	31421815	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:31421815G>A	uc002ebv.1	+	11	1232	c.1183G>A	c.(1183-1185)GAG>AAG	p.E395K	ITGAD_uc010cap.1_Missense_Mutation_p.E395K	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	395	FG-GAP 4.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CATGTCTCAGGAGAATGTGGA	0.592													16	72					0	0	0.006122	0	0
CES4	51716	broad.mit.edu	37	16	55806303	55806303	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:55806303G>A	uc002eik.2	+	5	605	c.154G>A	c.(154-156)GGG>AGG	p.G52R	CES4_uc010cce.2_Missense_Mutation_p.G52R	NR_003276				RecName: Full=Inactive carboxylesterase 4; AltName: Full=Placental carboxylesterase 3;          Short=PCE-3; Flags: Precursor;												0						ACACAGCCCGGGGAACTGGGG	0.587													3	15					0	0	0.004672	0	0
DPEP3	64180	broad.mit.edu	37	16	68010648	68010648	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:68010648C>T	uc002evc.3	-	8	1218	c.1124G>A	c.(1123-1125)GGA>GAA	p.G375E	DPEP3_uc010cex.2_Missense_Mutation_p.G374E	NM_022357	NP_071752	Q9H4B8	DPEP3_HUMAN	dipeptidase 3 isoform a	350					meiosis	anchored to membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			breast(3)	3		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0117)|Epithelial(162;0.0481)|all cancers(182;0.236)		GAACTCAGATCCAATGACTGC	0.567													8	28					0	0	0.010729	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353924	77353924	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:77353924G>A	uc002ffc.3	-	16	2773	c.2354C>T	c.(2353-2355)TCC>TTC	p.S785F	ADAMTS18_uc010chc.1_Missense_Mutation_p.S373F|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S481F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	785	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GTAACTGGAGGAAACCTGCAG	0.537													10	31					0	0	0.006214	0	0
CDH13	1012	broad.mit.edu	37	16	83520203	83520203	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:83520203C>T	uc002fgx.2	+	7	1023	c.903C>T	c.(901-903)ATC>ATT	p.I301I	CDH13_uc010vns.1_Silent_p.I348I|CDH13_uc010vnt.1_Silent_p.I47I|CDH13_uc010vnu.1_Silent_p.I262I	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	301	Cadherin 2.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TGTTCTACATCGATCCTGAGA	0.488													23	57					0	0	0.005443	0	0
FBXO31	79791	broad.mit.edu	37	16	87367779	87367779	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:87367779G>A	uc002fjw.2	-	8	1154	c.1110C>T	c.(1108-1110)GTC>GTT	p.V370V	FBXO31_uc010vot.1_Silent_p.V198V|FBXO31_uc002fjv.2_Silent_p.V262V	NM_024735	NP_079011	Q5XUX0	FBX31_HUMAN	F-box protein 31	370					cell cycle|cyclin catabolic process|mitotic cell cycle G1/S transition DNA damage checkpoint|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	SCF ubiquitin ligase complex	cyclin binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0272)		GCACCTCCAGGACGATGCGGG	0.697													21	52					0	0	0.014323	0	0
OR3A2	4995	broad.mit.edu	37	17	3181360	3181360	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:3181360G>A	uc002fvg.2	-	1	909	c.870C>T	c.(868-870)ATC>ATT	p.I290I		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						GCATAGGGTTGATAACAGTGT	0.453													17	45					0	0	0.006122	0	0
GP1BA	2811	broad.mit.edu	37	17	4836376	4836376	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:4836376C>T	uc010vsq.1	+	2	552	c.477C>T	c.(475-477)CTC>CTT	p.L159L	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	159											0						CCCCAGGGCTCCTGACGCCCA	0.607													14	50					0	0	0.001855	0	0
SLC2A4	6517	broad.mit.edu	37	17	7189832	7189832	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:7189832C>T	uc002gfp.2	+	11	1614	c.1414C>T	c.(1414-1416)CGA>TGA	p.R472*	SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	472	Cytoplasmic (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						ACCTGAAACTCGAGGCCGGAC	0.542													86	231					0	0	0.014410	0	0
CD68	968	broad.mit.edu	37	17	7484807	7484807	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:7484807C>T	uc002ghv.2	+	6	1234	c.1043C>T	c.(1042-1044)CCA>CTA	p.P348L	CD68_uc002ghu.2_Missense_Mutation_p.P321L|MPDU1_uc010vub.1_5'Flank|MPDU1_uc002ghw.2_5'Flank|MPDU1_uc002ghx.2_5'Flank|MPDU1_uc010vuc.1_5'Flank	NM_001251	NP_001242	P34810	CD68_HUMAN	CD68 antigen isoform A	348	Cytoplasmic (Potential).					endosome membrane|integral to membrane|lysosomal membrane|membrane fraction|plasma membrane					0						CGGAGACGCCCATCCGCCTAC	0.597													37	83					0	0	0.007835	0	0
PER1	5187	broad.mit.edu	37	17	8049417	8049417	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:8049417G>A	uc002gkd.2	-	17	2315	c.2077C>T	c.(2077-2079)CCA>TCA	p.P693S	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Missense_Mutation_p.P677S	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	693	CSNK1E binding domain (By similarity).				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						TCCTTCCGTGGGGTGGCCCCC	0.642			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					24	43					0	0	0.003954	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8216542	8216542	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:8216542G>A	uc002glc.2	+	3	1025	c.904G>A	c.(904-906)GAT>AAT	p.D302N	ARHGEF15_uc002glb.1_3'UTR|ARHGEF15_uc002gld.2_Missense_Mutation_p.D302N|ARHGEF15_uc010vuw.1_Intron	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	302					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GCCAGATCTTGATCTGCTTTC	0.592													16	37					0	0	0.007413	0	0
MYH4	4622	broad.mit.edu	37	17	10357053	10357053	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:10357053C>T	uc002gmn.2	-	23	2952	c.2841G>A	c.(2839-2841)CTG>CTA	p.L947L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	947	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						ATTCATCCTCCAGTTTCCTCT	0.443													73	275					0	0	0.014410	0	0
MYH2	4620	broad.mit.edu	37	17	10450905	10450905	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:10450905G>A	uc010coi.2	-	4	363	c.235C>T	c.(235-237)CCC>TCC	p.P79S	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.P79S|MYH2_uc010coj.2_Missense_Mutation_p.P79S	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	79	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GGGTTCATGGGGAAGACCTGA	0.418													47	173					0	0	0.014410	0	0
DNAH9	1770	broad.mit.edu	37	17	11622662	11622662	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:11622662C>T	uc002gne.2	+	27	5632	c.5564C>T	c.(5563-5565)ACC>ATC	p.T1855I	DNAH9_uc010coo.2_Missense_Mutation_p.T1149I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1855	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGCTACATCACCCTCACCCAG	0.617													8	40					0	0	0.003080	0	0
MYO15A	51168	broad.mit.edu	37	17	18022497	18022497	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:18022497G>A	uc010vxh.1	+	2	721	c.383G>A	c.(382-384)AGC>AAC	p.S128N		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	128	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CGGTCACTCAGCAAAGCGTCC	0.647													3	13					0	0	0.009096	0	0
MYO15A	51168	broad.mit.edu	37	17	18045505	18045505	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:18045505G>A	uc010vxh.1	+	23	6100	c.5762G>A	c.(5761-5763)CGA>CAA	p.R1921Q		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1921	Neck or regulatory domain.|IQ 1.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					ATTAAGCGGCGATTCCGCTCT	0.577													9	24					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	17	20334321	20334321	+	RNA	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:20334321G>A	uc010cqz.2	+	5		c.1034G>A								Homo sapiens cDNA, FLJ17707.																		GTGTGTTACAGTAAAGCTACC	0.433													9	21					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	17	21731231	21731231	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:21731231T>G	uc002gyy.3	+	2	658	c.533T>G	c.(532-534)GTG>GGG	p.V178G						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		ATCGAAAATGTGAAGGCCAAG	0.537													15	55					0	0	0.006122	0	0
NEK8	284086	broad.mit.edu	37	17	27066202	27066202	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:27066202G>A	uc002hcp.2	+	10	1400	c.1400G>A	c.(1399-1401)TGG>TAG	p.W467*		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	467	RCC1 3.					cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					CTATTTGCCTGGGGCCGTGGA	0.597													39	107					0	0	0.013114	0	0
ERAL1	26284	broad.mit.edu	37	17	27185480	27185480	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:27185480C>T	uc002hcy.1	+	6	697	c.687C>T	c.(685-687)ATC>ATT	p.I229I	ERAL1_uc002hcz.1_RNA|ERAL1_uc002hda.1_Silent_p.I36I|ERAL1_uc002hdb.1_Silent_p.I112I	NM_005702	NP_005693	O75616	ERAL1_HUMAN	Era-like 1	229	G.				ribosomal small subunit assembly	mitochondrial inner membrane|mitochondrial matrix	GTP binding|ribosomal small subunit binding|rRNA binding			skin(1)	1	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.12e-05)|all cancers(11;5.32e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.105)			ACTCCCAGATCCCTAGTGTCC	0.542													32	98					0	0	0.010818	0	0
NF1	4763	broad.mit.edu	37	17	29679304	29679304	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:29679304C>T	uc002hgg.2	+	51	7820	c.7487C>T	c.(7486-7488)TCT>TTT	p.S2496F	NF1_uc002hgh.2_Missense_Mutation_p.S2475F|NF1_uc010cso.2_Missense_Mutation_p.S684F|NF1_uc010wbt.1_Intron|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2496					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CCATGGTCCTCTCCCAAAGGT	0.478			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			14	61					0	0	0.004007	0	0
CCL7	6354	broad.mit.edu	37	17	32598281	32598281	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:32598281A>C	uc002hhz.2	+	2	263	c.193A>C	c.(193-195)ATC>CTC	p.I65L	CCL7_uc010ctf.2_Intron	NM_006273	NP_006264	P80098	CCL7_HUMAN	chemokine (C-C motif) ligand 7 precursor	65					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity|heparin binding			ovary(1)	1	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		GGAAGCTGTAATGTATGTGGA	0.493													31	99					0	0	0.005524	0	0
ERBB2	2064	broad.mit.edu	37	17	37881310	37881310	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:37881310C>T	uc002hso.2	+	21	2740	c.2502C>T	c.(2500-2502)AGC>AGT	p.S834S	ERBB2_uc002hsm.2_Silent_p.S804S|ERBB2_uc010cwa.2_Silent_p.S819S|ERBB2_uc002hsp.2_Silent_p.S637S|ERBB2_uc010cwb.2_Silent_p.S834S|ERBB2_uc010wek.1_Silent_p.S558S	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	834	Cytoplasmic (Potential).|Protein kinase.				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	AGGGGATGAGCTACCTGGAGG	0.597		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			12	37					0	0	0.006122	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274150	39274150	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:39274150T>A	uc002hvz.2	-	1	457	c.418A>T	c.(418-420)AGC>TGC	p.S140C		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	140	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ctggagatgctgcagctgggg	0.129													3	54					0	0	0.004482	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274206	39274206	+	Missense_Mutation	SNP	C	T	T	rs79388709		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:39274206C>T	uc002hvz.2	-	1	401	c.362G>A	c.(361-363)AGA>AAA	p.R121K		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	121	20.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			gcactggggtctgcagcagct	0.1													5	61					0	0	0.010729	0	0
RAB5C	5878	broad.mit.edu	37	17	40282417	40282417	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:40282417G>A	uc002hyz.2	-	3	421	c.104C>T	c.(103-105)TCC>TTC	p.S35F	RAB5C_uc002hza.2_Missense_Mutation_p.S35F|RAB5C_uc010cxx.2_Missense_Mutation_p.S68F|RAB5C_uc010cxy.2_Intron	NM_201434	NP_958842	P51148	RAB5C_HUMAN	RAB5C, member RAS oncogene family isoform a	35	GTP (By similarity).				protein transport|small GTPase mediated signal transduction	early endosome membrane|melanosome|plasma membrane	GTP binding|GTPase activity|protein binding			large_intestine(1)|skin(1)	2		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		GACGAGGCTGGATTTGCCTAC	0.597													36	57					0	0	0.006999	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40837320	40837320	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:40837320C>T	uc002iay.2	+	5	813	c.597C>T	c.(595-597)TTC>TTT	p.F199F	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	199	Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		GGGACGTGTTCGCCTTCAGCT	0.647													13	47					0	0	0.002450	0	0
ADAM11	4185	broad.mit.edu	37	17	42850448	42850448	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:42850448G>A	uc002ihh.2	+	10	820	c.820G>A	c.(820-822)GAT>AAT	p.D274N	ADAM11_uc010wjd.1_Missense_Mutation_p.D74N	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	274	Extracellular (Potential).|Peptidase M12B.				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				GAACCTGGCCGATGTGGTAAG	0.622													16	32					0	0	0.008871	0	0
COL1A1	1277	broad.mit.edu	37	17	48267689	48267689	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:48267689G>A	uc002iqm.2	-	35	2576	c.2450C>T	c.(2449-2451)CCT>CTT	p.P817L		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	817	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	GGTACTCACAGGGGGGCCAGC	0.597			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						10	40					0	0	0.003163	0	0
COL1A1	1277	broad.mit.edu	37	17	48271786	48271786	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:48271786G>A	uc002iqm.2	-	23	1664	c.1538C>T	c.(1537-1539)TCT>TTT	p.S513F		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	513	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	AGGGCCAGGAGAACCACGTTC	0.597			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						17	40					0	0	0.008871	0	0
CACNA1G	8913	broad.mit.edu	37	17	48696258	48696258	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:48696258C>T	uc002irk.1	+	33	6042	c.5670C>T	c.(5668-5670)TTC>TTT	p.F1890F	CACNA1G_uc002irj.1_Silent_p.F1856F|CACNA1G_uc002irl.1_Silent_p.F1867F|CACNA1G_uc002irm.1_Silent_p.F1856F|CACNA1G_uc002irn.1_Silent_p.F1849F|CACNA1G_uc002iro.1_Silent_p.F1856F|CACNA1G_uc002irp.1_Silent_p.F1890F|CACNA1G_uc002irq.1_Silent_p.F1867F|CACNA1G_uc002irr.1_Silent_p.F1890F|CACNA1G_uc002irs.1_Silent_p.F1879F|CACNA1G_uc002irt.1_Silent_p.F1872F|CACNA1G_uc002irv.1_Silent_p.F1879F|CACNA1G_uc002irw.1_Silent_p.F1867F|CACNA1G_uc002iru.1_Silent_p.F1856F|CACNA1G_uc002irx.1_Silent_p.F1803F|CACNA1G_uc002iry.1_Silent_p.F1792F|CACNA1G_uc002irz.1_Silent_p.F1796F|CACNA1G_uc002isa.1_Silent_p.F1769F|CACNA1G_uc002isb.1_Silent_p.F1810F|CACNA1G_uc002isc.1_Silent_p.F1792F|CACNA1G_uc002isd.1_Silent_p.F1778F|CACNA1G_uc002ise.1_Silent_p.F1758F|CACNA1G_uc002isf.1_Silent_p.F1785F|CACNA1G_uc002isg.1_Silent_p.F1751F|CACNA1G_uc002ish.1_Silent_p.F1758F|CACNA1G_uc002isi.1_Silent_p.F1746F	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1890	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GCAGCCCCTTCCTCTGGCCTG	0.692													3	8					0	0	0.009096	0	0
BZRAP1	9256	broad.mit.edu	37	17	56382452	56382452	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:56382452C>T	uc002ivx.3	-	30	6385	c.5514G>A	c.(5512-5514)AGG>AGA	p.R1838R	BZRAP1_uc002ivv.2_Silent_p.R68R|BZRAP1_uc002ivw.2_Silent_p.R70R|BZRAP1_uc010dcs.2_Silent_p.R1778R|BZRAP1_uc010wnt.1_Silent_p.R1829R	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1838						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCCTGGGTTCCCTGTCCAGGC	0.647													17	29					0	0	0.006122	0	0
TEX14	56155	broad.mit.edu	37	17	56676437	56676437	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:56676437C>T	uc010dcz.1	-	14	2405	c.2287G>A	c.(2287-2289)GAA>AAA	p.E763K	TEX14_uc002iwr.1_Missense_Mutation_p.E757K|TEX14_uc002iws.1_Missense_Mutation_p.E757K|TEX14_uc010dda.1_Missense_Mutation_p.E537K	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	763	Potential.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ATCTCGACTTCATCTAATATC	0.443													37	82					0	0	0.006230	0	0
TEX14	56155	broad.mit.edu	37	17	56700250	56700250	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:56700250C>T	uc010dcz.1	-	4	493	c.375G>A	c.(373-375)CCG>CCA	p.P125P	TEX14_uc002iwr.1_Silent_p.P125P|TEX14_uc002iws.1_Silent_p.P125P|TEX14_uc010dda.1_5'UTR	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	125						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCCAAGTCTTCGGGTTTTGAC	0.557													17	60					0	0	0.004990	0	0
BRIP1	83990	broad.mit.edu	37	17	59760670	59760670	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:59760670G>A	uc002izk.1	-	20	3878	c.3737C>T	c.(3736-3738)CCT>CTT	p.P1246L		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	1246					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						CTTAAAACCAGGAAACATGCC	0.279			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				18	54					0	0	0.010504	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	G	G	rs138671696	by1000genomes	TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:62968690A>G	uc002jez.3	-	4		c.641T>C			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AAAATTCCACAAGTCTCTTGG	0.373													3	124					0	0	0.004672	0	0
LOC651250	651250	broad.mit.edu	37	17	66123688	66123688	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:66123688C>T	uc002jgq.2	+	6		c.2811C>T			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						TGAGGCTATTCCAGCTCCCTT	0.562													10	16					0	0	0.006214	0	0
ABCA9	10350	broad.mit.edu	37	17	67012497	67012497	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:67012497C>T	uc002jhu.2	-	22	3079	c.2936G>A	c.(2935-2937)CGG>CAG	p.R979Q	ABCA9_uc010dez.2_Missense_Mutation_p.R979Q	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	979					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					GCAATTCAGCCGTTTTGTATT	0.348													35	119					0	0	0.006230	0	0
CD300A	11314	broad.mit.edu	37	17	72469977	72469977	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:72469977G>A	uc002jkv.2	+	2	664	c.343G>A	c.(343-345)GAT>AAT	p.D115N	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	115	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						AGACTTTCATGATCCCGTTGT	0.562													10	48					0	0	0.002450	0	0
AFMID	125061	broad.mit.edu	37	17	76187085	76187085	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:76187085T>C	uc002jva.3	+	2	113	c.98T>C	c.(97-99)GTT>GCT	p.V33A	AFMID_uc002juy.3_RNA|AFMID_uc010dhj.2_Missense_Mutation_p.V33A|AFMID_uc002jvb.3_Missense_Mutation_p.V33A|AFMID_uc002juz.3_Missense_Mutation_p.V33A	NM_001010982	NP_001010982	Q63HM1	AFMID_HUMAN	arylformamidase isoform 1	33						cytosol|nucleus	arylformamidase activity			large_intestine(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.134)			AGCCGATGGGTTGTCCGACTG	0.557													11	28					0	0	0.013537	0	0
ENPP7	339221	broad.mit.edu	37	17	77711004	77711004	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:77711004C>T	uc002jxa.2	+	4	1211	c.1191C>T	c.(1189-1191)ATC>ATT	p.I397I		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	397					negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			TGCTGGGCATCGTGCCCGAGG	0.652													6	21					0	0	0.001168	0	0
C17orf56	146705	broad.mit.edu	37	17	79205475	79205475	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:79205475G>A	uc002jzu.1	-	9	740	c.718C>T	c.(718-720)CTG>TTG	p.L240L	C17orf56_uc002jzr.1_5'Flank|C17orf56_uc002jzs.1_Silent_p.L156L|C17orf56_uc002jzt.1_Silent_p.L156L|C17orf56_uc002jzv.1_Silent_p.L88L|uc002jzw.1_RNA	NM_144679	NP_653280	Q96N21	CQ056_HUMAN	hypothetical protein LOC146705	240						integral to membrane					0	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CAGTCACTCAGGGCCACCACC	0.642													6	14					0	0	0.001168	0	0
DUS1L	64118	broad.mit.edu	37	17	80022717	80022717	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr17:80022717G>A	uc002kdq.2	-	1	638	c.219C>T	c.(217-219)GAC>GAT	p.D73D	DUS1L_uc002kdp.2_5'Flank|DUS1L_uc002kdr.2_Silent_p.D73D|DUS1L_uc002kds.2_RNA|DUS1L_uc002kdt.2_RNA|DUS1L_uc010wvi.1_Silent_p.D73D	NM_022156	NP_071439	Q6P1R4	DUS1L_HUMAN	PP3111 protein	73					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity			skin(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0211)			TGAGGGGCCGGTCCTCGGGGC	0.662													20	34					0	0	0.002780	0	0
KIAA0802	23255	broad.mit.edu	37	18	8718506	8718506	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:8718506C>T	uc002knr.2	+	3	200	c.58C>T	c.(58-60)CGG>TGG	p.R20W	KIAA0802_uc002knq.2_Missense_Mutation_p.R20W	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	371	Potential.										0						GCAGGAACTTCGGCGAGAACT	0.488													19	94					0	0	0.002780	0	0
CTAGE1	64693	broad.mit.edu	37	18	19996520	19996520	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:19996520G>A	uc002ktv.1	-	1	1359	c.1255C>T	c.(1255-1257)CAA>TAA	p.Q419*		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	419						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					ATCTTCTTTTGATAAAAATGA	0.373													17	62					0	0	0.007413	0	0
CTAGE1	64693	broad.mit.edu	37	18	19997575	19997575	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:19997575C>T	uc002ktv.1	-	1	304	c.200G>A	c.(199-201)AGC>AAC	p.S67N		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	67						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TTGAACAAGGCTAAATTTTTC	0.383													26	74					0	0	0.004656	0	0
NPC1	4864	broad.mit.edu	37	18	21141429	21141430	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:21141429_21141430GG>TA	uc002kum.3	-	5	799_800	c.525_526CC>TA	c.(523-528)CTCCTG>CTTATG	p.L176M	NPC1_uc010xaz.1_5'Flank|NPC1_uc010xba.1_Missense_Mutation_p.L21M	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	176					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TTCCCACACAGGAGTCCCAGGG	0.5													32	107					0	0	0.004672	0	0
LAMA3	3909	broad.mit.edu	37	18	21526249	21526249	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:21526249G>A	uc002kuq.2	+	70	9437	c.9351_splice	c.e70+1	p.K3117_splice	LAMA3_uc002kur.2_Splice_Site_p.K3061_splice|LAMA3_uc002kus.3_Splice_Site_p.K1508_splice|LAMA3_uc002kut.3_Splice_Site_p.K1452_splice	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1						cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAAACCAAAGGTAAATAGTTA	0.438													7	45					0	0	0.003080	0	0
CABYR	26256	broad.mit.edu	37	18	21740034	21740034	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:21740034G>A	uc002kux.2	+	5	2248	c.2096_splice	c.e5+1		CABYR_uc002kuy.2_Splice_Site_p.*380_splice|CABYR_uc002kuz.2_Splice_Site_p.*222_splice|CABYR_uc002kva.2_Splice_Site|CABYR_uc002kvb.2_Splice_Site_p.*282_splice|CABYR_uc002kvc.2_Splice_Site_p.*380_splice|CABYR_uc010dlw.2_Splice_Site	NM_012189	NP_036321	O75952	CABYR_HUMAN	calcium-binding tyrosine						ciliary or flagellar motility|signal transduction|sperm capacitation	cytoplasm|cytoskeleton|flagellum|motile cilium|nucleus	calcium ion binding|cAMP-dependent protein kinase regulator activity|enzyme binding|protein heterodimerization activity|SH3 domain binding				0	all_cancers(21;9.13e-05)|all_epithelial(16;5.49e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0305)|Ovarian(20;0.17)					CTGAAAACTGGTAGGTACACT	0.408													22	46					0	0	0.012319	0	0
DSG3	1830	broad.mit.edu	37	18	29038468	29038468	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:29038468G>A	uc002kws.2	+	4	386	c.277G>A	c.(277-279)GAT>AAT	p.D93N		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	93	Extracellular (Potential).|Cadherin 1.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGTGGGAATCGATCAGCCGCC	0.443													14	51					0	0	0.002450	0	0
C18orf34	374864	broad.mit.edu	37	18	30969550	30969550	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:30969550C>A	uc002kxn.2	-	4	304	c.162G>T	c.(160-162)AAG>AAT	p.K54N	C18orf34_uc010xbr.1_Missense_Mutation_p.K54N|C18orf34_uc010dmf.1_Missense_Mutation_p.K54N|C18orf34_uc002kxo.2_Missense_Mutation_p.K54N|C18orf34_uc002kxp.2_Missense_Mutation_p.K54N	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	54										ovary(1)	1						CACTGTTCTCCTTAGAGGCTC	0.264													26	72					2.46105e-21	2.52048e-21	0.010818	1	0
DCC	1630	broad.mit.edu	37	18	50589813	50589813	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:50589813A>T	uc002lfe.1	+	6	1711	c.1124A>T	c.(1123-1125)GAT>GTT	p.D375V	DCC_uc010xdr.1_Missense_Mutation_p.D223V|DCC_uc010dpf.1_Missense_Mutation_p.D30V	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	375	Extracellular (Potential).|Ig-like C2-type 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		ATTCCTAGTGATTATTTTCAG	0.313													26	79					0	0	0.004656	0	0
DCC	1630	broad.mit.edu	37	18	50831994	50831994	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:50831994G>A	uc002lfe.1	+	13	2545	c.1958G>A	c.(1957-1959)GGA>GAA	p.G653E	DCC_uc010xdr.1_Missense_Mutation_p.G501E|DCC_uc010dpf.1_Missense_Mutation_p.G308E	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	653	Extracellular (Potential).|Fibronectin type-III 3.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		ACACAAAATGGATTTATTACC	0.423													15	79					0	0	0.004007	0	0
NARS	4677	broad.mit.edu	37	18	55274789	55274789	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:55274789G>A	uc002lgs.2	-	8	916	c.688C>T	c.(688-690)CTC>TTC	p.L230F	NARS_uc002lgt.2_Missense_Mutation_p.L229F|NARS_uc010xea.1_Intron|NARS_uc010xeb.1_RNA|NARS_uc010xec.1_Missense_Mutation_p.L230F|NARS_uc010xed.1_Missense_Mutation_p.L197F	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	230					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	CTGTTGTTGAGCTGGACATCA	0.478													32	95					0	0	0.004878	0	0
KIAA1468	57614	broad.mit.edu	37	18	59949585	59949585	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:59949585C>T	uc002lil.2	+	25	3376	c.3161C>T	c.(3160-3162)CCT>CTT	p.P1054L	KIAA1468_uc010xel.1_Missense_Mutation_p.P1054L|KIAA1468_uc002lim.2_Missense_Mutation_p.P732L	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	1054							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				CTGGAAGATCCTCAGTATCAA	0.388													37	87					0	0	0.007835	0	0
SERPINB4	6318	broad.mit.edu	37	18	61328075	61328075	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:61328075G>A	uc002ljg.2	-	2	207	c.181C>T	c.(181-183)CAA>TAA	p.Q61*	SERPINB3_uc002lji.2_Nonsense_Mutation_p.Q61*|SERPINB3_uc010dqa.2_Nonsense_Mutation_p.Q61*|SERPINB3_uc010dqb.2_Nonsense_Mutation_p.Q61*|SERPINB3_uc010dqc.2_Nonsense_Mutation_p.Q61*			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	61					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TCTGTGACTTGATCAAAGTGA	0.438													19	45					0	0	0.008871	0	0
SERPINB11	89778	broad.mit.edu	37	18	61379833	61379833	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr18:61379833G>A	uc002ljk.3	+	4	325	c.263G>A	c.(262-264)GGT>GAT	p.G88D	SERPINB11_uc010xes.1_Translation_Start_Site|SERPINB11_uc010dqd.2_Translation_Start_Site|SERPINB11_uc002ljj.3_Translation_Start_Site|SERPINB11_uc010dqe.2_Translation_Start_Site|SERPINB11_uc010dqf.2_Intron	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	88					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				TCCGAGTTTGGTGTCTAATTC	0.413													7	56					0	0	0.003080	0	0
REXO1	57455	broad.mit.edu	37	19	1827034	1827034	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:1827034G>A	uc002lua.3	-	2	1849	c.1754C>T	c.(1753-1755)TCC>TTC	p.S585F	REXO1_uc010dsr.1_Missense_Mutation_p.S539F	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	585	Ser-rich.					nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ggaggaggaggaggaggagga	0.443													3	1					0	0	0.004672	0	0
ACTL9	284382	broad.mit.edu	37	19	8807852	8807852	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:8807852C>T	uc002mkl.2	-	1	1321	c.1200G>A	c.(1198-1200)CGG>CGA	p.R400R		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	400						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CGTACTGCTCCCGCAGGACCC	0.632													35	85					0	0	0.006230	0	0
MUC16	94025	broad.mit.edu	37	19	9020132	9020132	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:9020132C>T	uc002mkp.2	-	21	37567	c.37363G>A	c.(37363-37365)GGA>AGA	p.G12455R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12457	Extracellular (Potential).|SEA 3.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCATCCACTCCAGTGGCTGCT	0.517													35	89					0	0	0.006230	0	0
MUC16	94025	broad.mit.edu	37	19	9062771	9062771	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:9062771C>T	uc002mkp.2	-	3	24879	c.24675G>A	c.(24673-24675)TGG>TGA	p.W8225*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8227	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGTTTCTACCCAGTTGGGTG	0.458													14	24					0	0	0.003163	0	0
PIN1	5300	broad.mit.edu	37	19	9949114	9949114	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:9949114C>T	uc002mml.1	+	2	83	c.61C>T	c.(61-63)CGA>TGA	p.R21*	PIN1_uc002mmk.1_Nonsense_Mutation_p.R21*|PIN1_uc002mmm.1_Nonsense_Mutation_p.R21*|PIN1_uc002mmn.1_RNA	NM_006221	NP_006212	Q13526	PIN1_HUMAN	protein (peptidyl-prolyl cis/trans isomerase)	21	WW.				cell cycle|negative regulation of cell motility|negative regulation of ERK1 and ERK2 cascade|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of type I interferon production|positive regulation of Rho GTPase activity|positive regulation of ubiquitin-protein ligase activity|protein folding|regulation of mitosis|regulation of pathway-restricted SMAD protein phosphorylation	nucleoplasm	GTPase activating protein binding|mitogen-activated protein kinase kinase binding|peptidyl-prolyl cis-trans isomerase activity|phosphoserine binding|phosphothreonine binding			skin(1)	1						CCCTCCAGGCCGAGTGTACTA	0.652													7	10					0	0	0.004482	0	0
ZNF490	57474	broad.mit.edu	37	19	12692441	12692441	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:12692441G>A	uc002mtz.2	-	5	577	c.448C>T	c.(448-450)CCT>TCT	p.P150S		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	150					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATCCAGTAGGAGTTTCCAGG	0.433													57	96					0	0	0.014410	0	0
MAN2B1	4125	broad.mit.edu	37	19	12757510	12757510	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:12757510G>A	uc002mub.2	-	24	3036	c.2960C>T	c.(2959-2961)CCG>CTG	p.P987L	MAN2B1_uc010dyv.1_Missense_Mutation_p.P986L	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	987					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						GATGTTGGCCGGGTCCAGCTG	0.602													33	36					0	0	0.003271	0	0
IFI30	10437	broad.mit.edu	37	19	18288552	18288552	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:18288552C>T	uc002nic.1	+	6	741	c.668C>T	c.(667-669)ACC>ATC	p.T223I	PIK3R2_uc002nib.1_RNA	NM_006332	NP_006323	P13284	GILT_HUMAN	interferon, gamma-inducible protein 30	223				T -> A (in Ref. 3; BAC98466).	antigen processing and presentation of exogenous peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway	cell junction|extracellular region|lysosome	oxidoreductase activity, acting on a sulfur group of donors				0						CAGCTCCTTACCCTTGTCTGC	0.582													14	34					0	0	0.003163	0	0
KIAA0892	23383	broad.mit.edu	37	19	19448065	19448065	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:19448065C>A	uc002nmk.3	+	4	486	c.447C>A	c.(445-447)TTC>TTA	p.F149L		NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	149					cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						GCCTGCTCTTCCAGCTCGCTG	0.602													16	42					0.00074312	0.000749356	0.006122	1	0
ZNF99	7652	broad.mit.edu	37	19	22940476	22940476	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:22940476G>A	uc010xrh.1	-	5	1962	c.1962C>T	c.(1960-1962)TCC>TCT	p.S654S		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TAAGTTTTGAGGACCACTTAA	0.373													3	48					0	0	0.004672	0	0
DPY19L3	147991	broad.mit.edu	37	19	32954832	32954832	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:32954832C>T	uc002ntg.2	+	14	1679	c.1503C>T	c.(1501-1503)AGC>AGT	p.S501S	DPY19L3_uc002nth.1_Silent_p.S501S|DPY19L3_uc002nti.1_RNA	NM_207325	NP_997208	Q6ZPD9	D19L3_HUMAN	dpy-19-like 3	501	Helical; (Potential).					integral to membrane				ovary(4)	4	Esophageal squamous(110;0.162)					GCCTATGTAGCCCTGAAATAT	0.438													37	162					0	0	0.007835	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643311	37643311	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:37643311G>A	uc002ofo.1	-	5	1721	c.1490C>T	c.(1489-1491)TCC>TTC	p.S497F	ZNF585A_uc002ofm.1_Missense_Mutation_p.S442F|ZNF585A_uc002ofn.1_Missense_Mutation_p.S442F	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	497	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCCACATTTGGAACATATATA	0.413													12	51					0	0	0.003163	0	0
ZNF585A	199704	broad.mit.edu	37	19	37647190	37647190	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:37647190G>A	uc002ofo.1	-	3	371	c.140C>T	c.(139-141)TCT>TTT	p.S47F	ZNF585A_uc002ofm.1_5'UTR|ZNF585A_uc002ofn.1_5'UTR	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	47	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GTTTCTCTGAGAAGGGTCCAG	0.522													14	50					0	0	0.006122	0	0
ZNF573	126231	broad.mit.edu	37	19	38230520	38230520	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:38230520C>T	uc002ohe.2	-	4	893	c.871G>A	c.(871-873)GAA>AAA	p.E291K	ZNF573_uc010efs.2_Missense_Mutation_p.E204K|ZNF573_uc002ohd.2_Missense_Mutation_p.E289K|ZNF573_uc002ohf.2_Missense_Mutation_p.E233K|ZNF573_uc002ohg.2_Missense_Mutation_p.E203K	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	271	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			TGCCCATGTTCAACAAGATTT	0.403													12	75					0	0	0.002450	0	0
RYR1	6261	broad.mit.edu	37	19	38995526	38995526	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:38995526G>A	uc002oit.2	+	51	8336	c.8206G>A	c.(8206-8208)GAT>AAT	p.D2736N	RYR1_uc002oiu.2_Missense_Mutation_p.D2736N|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2736	5.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGGCAACTTTGATCCCCGGCC	0.587													9	33					0	0	0.010729	0	0
FCGBP	8857	broad.mit.edu	37	19	40419971	40419971	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:40419971C>T	uc002omp.3	-	6	3031	c.3023G>A	c.(3022-3024)GGG>GAG	p.G1008E		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1008	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGCTGGGTCCCCGTTGAAGTT	0.597													15	34					0	0	0.008871	0	0
FCGBP	8857	broad.mit.edu	37	19	40433426	40433426	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:40433426C>T	uc002omp.3	-	2	851	c.843G>A	c.(841-843)GGG>GGA	p.G281G		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	281	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CAGTGATACCCCCATGGTTGT	0.592													3	39					0	0	0.004672	0	0
ADCK4	79934	broad.mit.edu	37	19	41220505	41220505	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:41220505C>T	uc002oor.2	-	2	335	c.33G>A	c.(31-33)GGG>GGA	p.G11G	ADCK4_uc002ooq.1_Silent_p.G11G|ADCK4_uc002oos.2_Silent_p.G11G|ITPKC_uc002oot.2_5'Flank	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	11						integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			GTCCACCGGTCCCCCGAAGTA	0.657													8	25					0	0	0.008291	0	0
CEACAM3	1084	broad.mit.edu	37	19	42301774	42301774	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:42301774C>T	uc002orn.1	+	2	394	c.318C>T	c.(316-318)TCC>TCT	p.S106S	CEACAM3_uc010eia.1_Silent_p.S106S|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	106	Ig-like V-type.|Extracellular (Potential).					integral to membrane				skin(1)	1						CCAATGCATCCCTGCTGATCC	0.453													72	166					0	0	0.014410	0	0
DEDD2	162989	broad.mit.edu	37	19	42713916	42713916	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:42713916G>A	uc002osu.1	-	4	593	c.525C>T	c.(523-525)GCC>GCT	p.A175A	DEDD2_uc002osv.1_RNA|DEDD2_uc002osw.1_Silent_p.A170A|DEDD2_uc002osx.1_Missense_Mutation_p.P59L|DEDD2_uc002osy.1_Silent_p.A175A|DEDD2_uc010eid.2_RNA	NM_133328	NP_579874	Q8WXF8	DEDD2_HUMAN	death effector domain-containing  DNA binding	175					activation of pro-apoptotic gene products|apoptotic nuclear change|cellular homeostasis|induction of apoptosis via death domain receptors|intracellular signal transduction|negative regulation of transcription, DNA-dependent|RNA processing|rRNA catabolic process|transcription, DNA-dependent	nucleolus	DNA binding|receptor signaling complex scaffold activity				0		Prostate(69;0.0704)				GTGCGGCTGGGGCCCCTCTCC	0.652													17	54					0	0	0.004990	0	0
CEACAM16	388551	broad.mit.edu	37	19	45206660	45206660	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:45206660G>A	uc010xxd.1	+	3	285	c.79G>A	c.(79-81)GAG>AAG	p.E27K	CEACAM16_uc002ozq.2_Missense_Mutation_p.E86K	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	27										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				TATCACCCTGGAGCCTGCCCA	0.527													7	23					0	0	0.003080	0	0
PNMAL2	57469	broad.mit.edu	37	19	46997130	46997130	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:46997130C>T	uc002pes.2	-	1	2040	c.1593G>A	c.(1591-1593)AGG>AGA	p.R531R	uc002peu.1_5'Flank	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	531										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		CCCGGGGCTTCCTGGATGCCC	0.751													4	9					0	0	0.009096	0	0
ATF5	22809	broad.mit.edu	37	19	50435931	50435931	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:50435931C>T	uc010enq.1	+	4	998	c.431C>T	c.(430-432)TCC>TTC	p.S144F	ATF5_uc002prd.2_Missense_Mutation_p.S144F	NM_012068	NP_036200	Q9Y2D1	ATF5_HUMAN	activating transcription factor 5	144	Interaction with PTP4A1 (By similarity).				regulation of transcription from RNA polymerase II promoter	cytoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			skin(2)	2		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00221)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		CTCCCCCTGTCCCTCCCCTCC	0.502													3	15					0	0	0.004672	0	0
MYH14	79784	broad.mit.edu	37	19	50779322	50779322	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:50779322C>T	uc002prr.1	+	26	3466	c.3419C>T	c.(3418-3420)GCC>GTC	p.A1140V	MYH14_uc010enu.1_Missense_Mutation_p.A1181V|MYH14_uc002prq.1_Missense_Mutation_p.A1148V	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1140	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		CTGGCCGAGGCCCAGGAGGAC	0.701													4	12					0	0	0.009096	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52131205	52131205	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:52131205G>A	uc002pxe.2	-	5	1018	c.879C>T	c.(877-879)ATC>ATT	p.I293I		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	293	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CGGTATTGGAGATGGGGGTGG	0.622													16	57					0	0	0.008871	0	0
ZNF836	162962	broad.mit.edu	37	19	52660119	52660119	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:52660119G>A	uc010ydi.1	-	5	1191	c.817C>T	c.(817-819)CCA>TCA	p.P273S	ZNF836_uc010ydj.1_Missense_Mutation_p.P273S	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	273					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CATTGATATGGCTTCCCCCTT	0.408													9	52					0	0	0.006214	0	0
ZNF808	388558	broad.mit.edu	37	19	53058286	53058286	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:53058286C>T	uc010epq.1	+	5	2294	c.2117C>T	c.(2116-2118)CCT>CTT	p.P706L	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	706					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		GGAATGAAACCTTACAAGTGT	0.413													42	236					0	0	0.010771	0	0
ZNF331	55422	broad.mit.edu	37	19	54080033	54080033	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:54080033T>A	uc002qbx.1	+	7	1653	c.219T>A	c.(217-219)GAT>GAA	p.D73E	ZNF331_uc002qby.1_Missense_Mutation_p.D73E|ZNF331_uc002qbz.1_Missense_Mutation_p.D73E|ZNF331_uc002qca.1_Missense_Mutation_p.D73E|ZNF331_uc010eqr.1_Missense_Mutation_p.D73E|ZNF331_uc002qcb.1_Missense_Mutation_p.D73E|ZNF331_uc002qcc.1_Missense_Mutation_p.D73E|ZNF331_uc002qcd.1_Missense_Mutation_p.D73E	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	73	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		GGAATTCAGATAGAAGAAGTA	0.383			T	?	follicular thyroid adenoma								14	31					0	0	0.003163	0	0
LILRB4	11006	broad.mit.edu	37	19	55179098	55179098	+	Missense_Mutation	SNP	G	A	A	rs146325339	byFrequency	TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:55179098G>A	uc002qgp.2	+	11	1416	c.1054G>A	c.(1054-1056)GAT>AAT	p.D352N	LILRB4_uc002qgq.2_Missense_Mutation_p.D351N|LILRB4_uc002qgr.2_Missense_Mutation_p.D394N|LILRB4_uc010ert.2_Missense_Mutation_p.D393N|LILRB4_uc010eru.2_Missense_Mutation_p.D382N	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	352	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GAGCCCACACGATGAAGACCC	0.567													9	63					0	0	0.010729	0	0
NLRP4	147945	broad.mit.edu	37	19	56369880	56369880	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:56369880C>T	uc002qmd.3	+	3	1543	c.1121C>T	c.(1120-1122)TCT>TTT	p.S374F	NLRP4_uc002qmf.2_Missense_Mutation_p.S299F|NLRP4_uc010etf.2_Missense_Mutation_p.S205F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	374	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GTGTACTCCTCTTTCGTCTTT	0.582													15	27					0	0	0.006122	0	0
NLRP8	126205	broad.mit.edu	37	19	56467063	56467063	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:56467063G>A	uc002qmh.2	+	3	1710	c.1639G>A	c.(1639-1641)GGA>AGA	p.G547R	NLRP8_uc010etg.2_Missense_Mutation_p.G547R	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	547						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GAGTCCCAGAGGAAGCAAAAG	0.468													27	39					0	0	0.005443	0	0
TRIM28	10155	broad.mit.edu	37	19	59059887	59059887	+	Silent	SNP	A	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr19:59059887A>C	uc002qtg.1	+	9	1540	c.1251A>C	c.(1249-1251)TCA>TCC	p.S417S	TRIM28_uc010eut.1_Silent_p.S335S|TRIM28_uc002qth.1_Silent_p.S40S	NM_005762	NP_005753	Q13263	TIF1B_HUMAN	tripartite motif-containing 28 protein	417					epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	nucleoplasm	chromo shadow domain binding|ligase activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		GCACTAACTCAACAGGCCCTG	0.587													12	90					0	0	0.004007	0	0
KIDINS220	57498	broad.mit.edu	37	2	8871781	8871781	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:8871781G>A	uc002qzc.2	-	30	4567	c.4385C>T	c.(4384-4386)TCA>TTA	p.S1462L	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.S1363L|KIDINS220_uc002qzb.2_Missense_Mutation_p.S316L	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1462	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AACCCCTGATGATGAATAATC	0.458													26	75					0	0	0.003954	0	0
C2orf16	84226	broad.mit.edu	37	2	27803477	27803477	+	Silent	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:27803477A>G	uc002rkz.3	+	1	4089	c.4038A>G	c.(4036-4038)CAA>CAG	p.Q1346Q	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1346										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					AACCTTCCCAACCCAAGTTCA	0.468													13	41					0	0	0.013537	0	0
XDH	7498	broad.mit.edu	37	2	31621549	31621549	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:31621549C>T	uc002rnv.1	-	5	402	c.323G>A	c.(322-324)AGC>AAC	p.S108N		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	108					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GGAGCCGTGGCTTTTGGCAAT	0.552													32	107					0	0	0.008740	0	0
SRD5A2	6716	broad.mit.edu	37	2	31754444	31754444	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:31754444G>A	uc002rnw.1	-	5	702	c.631C>T	c.(631-633)CTC>TTC	p.L211F		NM_000348	NP_000339	P31213	S5A2_HUMAN	3-oxo-5 alpha-steroid 4-dehydrogenase 2	211	Helical; (Potential).				androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity				0	Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	AGTGCTGGGAGGGACCAAGTG	0.473													11	36					0	0	0.013537	0	0
THADA	63892	broad.mit.edu	37	2	43797554	43797554	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:43797554G>A	uc002rsw.3	-	14	2512	c.2160C>T	c.(2158-2160)CAC>CAT	p.H720H	THADA_uc010far.2_5'UTR|THADA_uc002rsx.3_Silent_p.H720H|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Silent_p.H430H|THADA_uc010fat.1_5'UTR|THADA_uc002rta.2_Silent_p.H430H|THADA_uc002rtb.1_Silent_p.H720H|THADA_uc002rtc.3_Silent_p.H720H|THADA_uc002rtd.2_Silent_p.H720H	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	720							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				AAACAGAAGGGTGCTGTTTGG	0.313													19	79					0	0	0.004656	0	0
LHCGR	3973	broad.mit.edu	37	2	48956337	48956337	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:48956337C>T	uc002rwu.3	-	3	333	c.263G>A	c.(262-264)AGG>AAG	p.R88K	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	88	Extracellular (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	AGCTTCTATCCTTTCCAGGGA	0.423									Familial_Male-Limited_Precocious_Puberty				36	88					0	0	0.008740	0	0
GPR75	10936	broad.mit.edu	37	2	54080990	54080991	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:54080990_54080991GG>AA	uc002rxo.3	-	2	1174_1175	c.903_904CC>TT	c.(901-906)AGCCGA>AGTTGA	p.R302*	ASB3_uc002rxi.3_Intron	NM_006794	NP_006785	O95800	GPR75_HUMAN	G protein-coupled receptor 75	302	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|skin(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			AGCTGGAGTCGGCTTGCTGCAG	0.535													11	39					0	0	0.004672	0	0
CNRIP1	25927	broad.mit.edu	37	2	68520994	68520995	+	Nonstop_Mutation	DNP	TC	AT	AT			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:68520994_68520995TC>AT	uc002sek.3	-	3	1145_1146	c.494_495GA>AT	c.(493-495)TGA>TAT	p.*165Y	CNRIP1_uc002sej.3_Intron|CNRIP1_uc002sem.1_RNA|CNRIP1_uc002sel.3_RNA	NM_015463	NP_056278	Q96F85	CNRP1_HUMAN	cannabinoid receptor interacting protein 1	165							protein binding			liver(1)	1						AGAGCCACTTTCAGAGGAAGGA	0.48													18	67					0	0	0.004672	0	0
PLEK	5341	broad.mit.edu	37	2	68613777	68613777	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:68613777G>A	uc002sen.3	+	5	778	c.616G>A	c.(616-618)GAA>AAA	p.E206K	PLEK_uc010fde.2_Missense_Mutation_p.E206K	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	206	DEP.				actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		TGGAACTGCTGAAAACCCTTT	0.512													26	87					0	0	0.009535	0	0
ASPRV1	151516	broad.mit.edu	37	2	70187962	70187962	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:70187962C>T	uc002sfz.3	-	1	1436	c.859G>A	c.(859-861)GAT>AAT	p.D287N		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	287	Peptidase A2.|Extracellular (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						TGGAGCACATCAGTGCCAATG	0.572													32	84					0	0	0.012213	0	0
ACTG2	72	broad.mit.edu	37	2	74128495	74128495	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:74128495G>A	uc002sjw.2	+	2	179	c.57G>A	c.(55-57)AAG>AAA	p.K19K	ACTG2_uc010fex.1_Silent_p.K19K|ACTG2_uc010fey.2_Silent_p.K19K|ACTG2_uc010yrn.1_Silent_p.K19K	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	19					muscle contraction	cytoskeleton|cytosol	ATP binding				0						GCCTGTGCAAGGCAGGCTTCG	0.622													13	42					0	0	0.001855	0	0
SMYD1	150572	broad.mit.edu	37	2	88408040	88408040	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:88408040C>T	uc002ssr.2	+	9	1298	c.1296C>T	c.(1294-1296)CCC>CCT	p.P432P	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Silent_p.P128P	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	432					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CCTCCCACCCCATCACTAAGG	0.562													6	26					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	2	89384780	89384780	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:89384780C>T	uc010ytr.1	-	50		c.5360G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CTGAACCTGGCTGGGATACCA	0.522													26	66					0	0	0.007291	0	0
MAP4K4	9448	broad.mit.edu	37	2	102459092	102459092	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:102459092G>T	uc002tbg.2	+	11	1026	c.971G>T	c.(970-972)AGT>ATT	p.S324I	MAP4K4_uc002tbc.2_Missense_Mutation_p.S324I|MAP4K4_uc002tbd.2_Missense_Mutation_p.S324I|MAP4K4_uc002tbe.2_Missense_Mutation_p.S324I|MAP4K4_uc002tbf.2_Missense_Mutation_p.S324I|MAP4K4_uc010yvy.1_Missense_Mutation_p.S324I|MAP4K4_uc002tbh.2_Missense_Mutation_p.S324I|MAP4K4_uc002tbi.2_Missense_Mutation_p.S177I|MAP4K4_uc010yvz.1_Missense_Mutation_p.S304I|MAP4K4_uc002tbk.2_5'Flank|MAP4K4_uc002tbj.1_Missense_Mutation_p.S220I	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	324					intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TATGAGTACAGTGGGAGTGAG	0.463													3	12					6.4e-05	6.47181e-05	0.004672	1	0
SLC9A2	6549	broad.mit.edu	37	2	103300663	103300663	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:103300663C>T	uc002tca.2	+	5	1435	c.1293C>T	c.(1291-1293)ATC>ATT	p.I431I		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	431						integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						ACCAGTTCATCATTGCCTATG	0.453													29	101					0	0	0.009535	0	0
IL1F8	27177	broad.mit.edu	37	2	113788670	113788670	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:113788670C>T	uc002tiq.1	-	3	180	c.76G>A	c.(76-78)GGA>AGA	p.G26R	IL1F8_uc002tir.1_Missense_Mutation_p.G26R	NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	26					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						AAAGAATTTCCACTCAGGACC	0.483													12	47					0	0	0.003163	0	0
DPP10	57628	broad.mit.edu	37	2	116066815	116066815	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:116066815G>A	uc002tla.1	+	2	518	c.61G>A	c.(61-63)GAA>AAA	p.E21K	DPP10_uc002tlb.1_5'UTR|DPP10_uc002tlc.1_Missense_Mutation_p.E17K|DPP10_uc002tle.2_Missense_Mutation_p.E25K|DPP10_uc002tlf.1_Missense_Mutation_p.E14K	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	21	Mediates effects on KCND2.|Cytoplasmic (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						ATCTCGGTAGGAACTGGGAAG	0.388													11	41					0	0	0.010729	0	0
MYO7B	4648	broad.mit.edu	37	2	128346007	128346007	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:128346007C>T	uc002top.2	+	15	1784	c.1731C>T	c.(1729-1731)ATC>ATT	p.I577I		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	577	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GCACAGATATCCTCACCCTGG	0.557													7	34					0	0	0.004482	0	0
WDR33	55339	broad.mit.edu	37	2	128467387	128467387	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:128467387G>A	uc002tpg.1	-	19	3535	c.3352C>T	c.(3352-3354)CCC>TCC	p.P1118S		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	1118					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		CTTCCTCTGGGGGGAGCACGG	0.537													37	129					0	0	0.014410	0	0
LOC440905	440905	broad.mit.edu	37	2	130785942	130785942	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:130785942C>T	uc002tpz.2	-	11		c.2926G>A			LOC440905_uc002tpy.1_RNA	NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						GGCCTGCTGGCTGATGGCATT	0.483													5	15					0	0	0.001984	0	0
GPR148	344561	broad.mit.edu	37	2	131487207	131487207	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:131487207C>T	uc002trv.1	+	1	485	c.483C>T	c.(481-483)TCC>TCT	p.S161S		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	161	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					CCTTCATGTCCCATGGGGCTG	0.607													8	33					0	0	0.010729	0	0
CCDC74A	90557	broad.mit.edu	37	2	132288220	132288220	+	Missense_Mutation	SNP	G	A	A	rs148324548		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:132288220G>A	uc002tta.2	+	3	416	c.364G>A	c.(364-366)GGA>AGA	p.G122R	CCDC74A_uc002ttb.2_Intron	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	122										skin(1)	1						CTGCATCAACGGAGTGTGGGT	0.657													4	43					0	0	0.001984	0	0
R3HDM1	23518	broad.mit.edu	37	2	136437805	136437805	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:136437805C>T	uc002tuo.2	+	20	2635	c.2265C>T	c.(2263-2265)TTC>TTT	p.F755F	R3HDM1_uc010fni.2_Silent_p.F754F|R3HDM1_uc002tup.2_Silent_p.F700F|R3HDM1_uc010zbh.1_Silent_p.F503F	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	755							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		CTGTTATGTTCCCTAATCAGT	0.383													23	99					0	0	0.004656	0	0
LCT	3938	broad.mit.edu	37	2	136570190	136570190	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:136570190C>T	uc002tuu.1	-	7	2055	c.2044G>A	c.(2044-2046)GGT>AGT	p.G682S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	682	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGCGACAGACCCAGAAAATCA	0.537													18	46					0	0	0.006122	0	0
LCT	3938	broad.mit.edu	37	2	136570208	136570208	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:136570208C>T	uc002tuu.1	-	7	2037	c.2026G>A	c.(2026-2028)GGC>AGC	p.G676S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	676	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TCAGCAGAGCCTTTCAGGAGC	0.547													25	55					0	0	0.003954	0	0
LRP1B	53353	broad.mit.edu	37	2	141092073	141092073	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:141092073C>T	uc002tvj.1	-	79	13144	c.12172G>A	c.(12172-12174)GAT>AAT	p.D4058N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4058	Extracellular (Potential).|LDL-receptor class B 35.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGTGTACCATCCATGGCTGCT	0.438										TSP Lung(27;0.18)			26	81					0	0	0.009535	0	0
LRP1B	53353	broad.mit.edu	37	2	141816566	141816566	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:141816566C>T	uc002tvj.1	-	9	2266	c.1294G>A	c.(1294-1296)GAT>AAT	p.D432N	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	432	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTGTAGTTATCAGAATTGGTT	0.294										TSP Lung(27;0.18)			19	101					0	0	0.014323	0	0
GTDC1	79712	broad.mit.edu	37	2	144710343	144710343	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:144710343G>A	uc002tvp.2	-	10	1477	c.1198C>T	c.(1198-1200)CCA>TCA	p.P400S	GTDC1_uc002tvo.2_Silent_p.F351F|GTDC1_uc002tvq.2_Missense_Mutation_p.P282S|GTDC1_uc002tvr.2_Missense_Mutation_p.P315S|GTDC1_uc010fnn.2_Missense_Mutation_p.P400S|GTDC1_uc002tvs.2_Missense_Mutation_p.P368S|GTDC1_uc010fno.2_Missense_Mutation_p.P271S	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	400					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		CAGCTACCTGGAAATATTTCG	0.323													23	91					0	0	0.003954	0	0
MBD5	55777	broad.mit.edu	37	2	149248083	149248083	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:149248083G>A	uc002twm.3	+	12	5171	c.4183G>A	c.(4183-4185)GGA>AGA	p.G1395R	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Missense_Mutation_p.G1395R|MBD5_uc002two.2_Missense_Mutation_p.G653R|MBD5_uc002twp.2_Missense_Mutation_p.G445R	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1395	PWWP.					chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CCAAATCAAAGGACTGACTTC	0.448													22	50					0	0	0.003954	0	0
RIF1	55183	broad.mit.edu	37	2	152325177	152325177	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:152325177C>T	uc002txm.2	+	33	6978	c.6848C>T	c.(6847-6849)TCC>TTC	p.S2283F	RIF1_uc002txl.2_Missense_Mutation_p.S2257F|RIF1_uc002txn.2_Missense_Mutation_p.S2257F|RIF1_uc002txo.2_Missense_Mutation_p.S2257F|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	2283	Interaction with condensed chromosomes in telophase.				cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		GCCAAAGAATCCATACCATGC	0.373													32	112					0	0	0.003755	0	0
FMNL2	114793	broad.mit.edu	37	2	153468117	153468117	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:153468117G>A	uc002tye.2	+	11	1427	c.1060G>A	c.(1060-1062)GAC>AAC	p.D354N		NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	354	GBD/FH3.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						CGAATACTTGGACGTGAGTAT	0.383													3	7					0	0	0.004672	0	0
CYTIP	9595	broad.mit.edu	37	2	158272197	158272197	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:158272197G>A	uc002tzj.1	-	8	1144	c.1072C>T	c.(1072-1074)CGC>TGC	p.R358C	CYTIP_uc010zcl.1_Missense_Mutation_p.R252C	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	358					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						CGTCAAAAGCGACTTTCTTCC	0.473													12	41					0	0	0.001855	0	0
LY75	4065	broad.mit.edu	37	2	160729052	160729052	+	Missense_Mutation	SNP	C	T	T	rs115433124	by1000genomes	TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:160729052C>T	uc002ubc.3	-	13	2096	c.2027G>A	c.(2026-2028)CGA>CAA	p.R676Q	LY75_uc002ubb.3_Missense_Mutation_p.R676Q|LY75_uc010fos.2_Missense_Mutation_p.R676Q|LY75_uc010fot.1_Missense_Mutation_p.R676Q	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	676	Extracellular (Potential).|C-type lectin 4.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTGGCAGAATCGTTCAGCTTC	0.353													37	91					0	0	0.014410	0	0
SCN3A	6328	broad.mit.edu	37	2	166003503	166003503	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:166003503T>G	uc002ucx.2	-	12	1909	c.1417A>C	c.(1417-1419)AGT>CGT	p.S473R	SCN3A_uc002ucy.2_Missense_Mutation_p.S473R|SCN3A_uc002ucz.2_Missense_Mutation_p.S473R|SCN3A_uc002uda.1_Missense_Mutation_p.S342R|SCN3A_uc002udb.1_Missense_Mutation_p.S342R	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	473						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CCTATTCCACTGAAATCTCTT	0.428													20	64					0	0	0.012319	0	0
SCN9A	6335	broad.mit.edu	37	2	167149869	167149869	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:167149869C>T	uc010fpl.2	-	9	1320	c.979G>A	c.(979-981)GGG>AGG	p.G327R	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.G198R|SCN9A_uc002uds.1_Missense_Mutation_p.G198R|SCN9A_uc002udt.1_Missense_Mutation_p.G198R	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	327	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CAGGTGTACCCCTCTGGACAC	0.438													12	16					0	0	0.002450	0	0
XIRP2	129446	broad.mit.edu	37	2	168105217	168105217	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:168105217G>A	uc002udx.2	+	8	7333	c.7315G>A	c.(7315-7317)GAT>AAT	p.D2439N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D2264N|XIRP2_uc010fpq.2_Missense_Mutation_p.D2217N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2264					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAATAAGAACGATTTTTCCCC	0.408													31	73					0	0	0.007835	0	0
XIRP2	129446	broad.mit.edu	37	2	168105435	168105435	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:168105435G>A	uc002udx.2	+	8	7551	c.7533G>A	c.(7531-7533)AGG>AGA	p.R2511R	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.R2336R|XIRP2_uc010fpq.2_Silent_p.R2289R|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2336					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAGCACCCAGGAAAAAACAGA	0.358													18	82					0	0	0.008871	0	0
LRP2	4036	broad.mit.edu	37	2	170003352	170003352	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:170003352G>A	uc002ues.2	-	69	12921	c.12708C>T	c.(12706-12708)ATC>ATT	p.I4236I		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4236	LDL-receptor class B 36.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCAAATAATCGATAGAAAGGC	0.453													28	74					0	0	0.010818	0	0
METTL8	79828	broad.mit.edu	37	2	172187129	172187129	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:172187129G>A	uc010zdo.1	-	7	941	c.800C>T	c.(799-801)CCA>CTA	p.P267L	METTL8_uc002ugu.3_Missense_Mutation_p.P267L|METTL8_uc002ugv.3_Missense_Mutation_p.P267L|METTL8_uc002ugt.3_Missense_Mutation_p.P267L|METTL8_uc002ugs.3_Missense_Mutation_p.P217L|METTL8_uc010zdp.1_Missense_Mutation_p.P222L	NM_024770	NP_079046	B3KW44	B3KW44_HUMAN	methyltransferase like 8	267							methyltransferase activity			ovary(1)	1						GATCCCATCTGGAAAAGGGTA	0.438													19	43					0	0	0.010504	0	0
HOXD10	3236	broad.mit.edu	37	2	176983683	176983683	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:176983683G>A	uc002ukj.2	+	2	817	c.747G>A	c.(745-747)GAG>GAA	p.E249E		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	249						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		TTTTGTTAGAGGAAATCAAGT	0.289													13	32					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179643972	179643972	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:179643972C>T	uc010zfg.1	-	23	4171	c.3947G>A	c.(3946-3948)GGA>GAA	p.G1316E	TTN_uc010zfh.1_Missense_Mutation_p.G1270E|TTN_uc010zfi.1_Missense_Mutation_p.G1270E|TTN_uc010zfj.1_Missense_Mutation_p.G1270E|TTN_uc002unb.2_Missense_Mutation_p.G1316E|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1316							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAATGGATATCCAGACATCTT	0.303													18	48					0	0	0.003954	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187693413	187693413	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:187693413C>T	uc002upu.1	-	9	1240	c.1200G>A	c.(1198-1200)GTG>GTA	p.V400V		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	400					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CTTGTCCATTCACTGCTGAAT	0.363													13	42					0	0	0.002450	0	0
TRAK2	66008	broad.mit.edu	37	2	202272229	202272229	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:202272229G>A	uc002uyb.3	-	3	629	c.183C>T	c.(181-183)CTC>CTT	p.L61L	TRAK2_uc002uyc.2_Silent_p.L61L	NM_015049	NP_055864	O60296	TRAK2_HUMAN	trafficking protein, kinesin binding 2	61						early endosome|plasma membrane	GABA receptor binding				0						CATATAGAAAGAGAGTGTCTA	0.463													21	90					0	0	0.003954	0	0
PARD3B	117583	broad.mit.edu	37	2	206364752	206364752	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:206364752C>T	uc002var.1	+	21	3384	c.3177C>T	c.(3175-3177)CTC>CTT	p.L1059L	PARD3B_uc002vao.1_Silent_p.L958L|PARD3B_uc002vap.1_Silent_p.L997L|PARD3B_uc002vaq.1_Silent_p.L990L	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	1059					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		ATGACCTACTCTGGGTAAGCG	0.428													38	108					0	0	0.010771	0	0
ZDBF2	57683	broad.mit.edu	37	2	207169892	207169892	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:207169892G>A	uc002vbp.2	+	5	890	c.640G>A	c.(640-642)GAT>AAT	p.D214N		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	214							nucleic acid binding|zinc ion binding			ovary(3)	3						AGCTCATTTGGATTCAGTTAG	0.423													13	35					0	0	0.002450	0	0
PTH2R	5746	broad.mit.edu	37	2	209302320	209302320	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:209302320G>A	uc002vdb.2	+	3	450	c.237G>A	c.(235-237)GGG>GGA	p.G79G	PTH2R_uc010zjb.1_Silent_p.G90G	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	79	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GAACAGTGGGGAAAATATCGG	0.313													15	47					0	0	0.012319	0	0
ERBB4	2066	broad.mit.edu	37	2	212537891	212537891	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:212537891G>A	uc002veg.1	-	14	1812	c.1714C>T	c.(1714-1716)CCG>TCG	p.P572S	ERBB4_uc002veh.1_Missense_Mutation_p.P572S|ERBB4_uc010zji.1_Missense_Mutation_p.P572S|ERBB4_uc010zjj.1_Missense_Mutation_p.P572S|ERBB4_uc010fut.1_Missense_Mutation_p.P572S	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	572	Extracellular (Potential).|Cys-rich.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		AGGCTTACCGGTCCATGGCAT	0.413										TSP Lung(8;0.080)			25	79					0	0	0.006320	0	0
SLC4A3	6508	broad.mit.edu	37	2	220502394	220502394	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:220502394C>T	uc002vmp.3	+	17	2896	c.2627C>T	c.(2626-2628)GCC>GTC	p.A876V	SLC4A3_uc002vmo.3_Missense_Mutation_p.A903V|SLC4A3_uc010fwm.2_Missense_Mutation_p.A426V|SLC4A3_uc010fwn.1_Missense_Mutation_p.A385V	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	876	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AATGGCAGTGCCCTGCCCCCC	0.642													9	21					0	0	0.006214	0	0
COL4A4	1286	broad.mit.edu	37	2	227946902	227946902	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:227946902C>T	uc010zlt.1	-	23	2279	c.1625G>A	c.(1624-1626)GGA>GAA	p.G542E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	542	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		ACCATGCTTTCCCTTGGTGAA	0.413													34	59					0	0	0.013726	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882461	228882461	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:228882461G>A	uc002vpq.2	-	7	3156	c.3109C>T	c.(3109-3111)CTT>TTT	p.L1037F	SPHKAP_uc002vpp.2_Missense_Mutation_p.L1037F|SPHKAP_uc010zlx.1_Missense_Mutation_p.L1037F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1037						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTGGCAAAAAGATTGACAGAA	0.502													24	60					0	0	0.005443	0	0
SP140	11262	broad.mit.edu	37	2	231109743	231109743	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:231109743G>A	uc002vql.2	+	6	727	c.612G>A	c.(610-612)AAG>AAA	p.K204K	SP140_uc010zma.1_RNA|SP140_uc002vqk.2_Silent_p.K204K|SP140_uc002vqn.2_Silent_p.K204K|SP140_uc002vqm.2_Silent_p.K204K|SP140_uc010fxl.2_Silent_p.K204K	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	204					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CTCTCCCAAAGGCTGGTGGAG	0.463													16	30					0	0	0.007413	0	0
SP100	6672	broad.mit.edu	37	2	231380004	231380004	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:231380004C>T	uc002vqt.2	+	25	2430	c.2289C>T	c.(2287-2289)TTC>TTT	p.F763F	SP100_uc002vqu.1_Intron|SP100_uc010fxp.1_Intron	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	763	Poly-Lys.				DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		AAAAGAAGTTCAAGGATCCCA	0.438													19	28					0	0	0.012319	0	0
ESPNL	339768	broad.mit.edu	37	2	239037370	239037370	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr2:239037370G>A	uc002vxq.3	+	8	1348	c.1238G>A	c.(1237-1239)GGG>GAG	p.G413E	ESPNL_uc010fyw.2_Missense_Mutation_p.G109E	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	413										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GCGCTGGCGGGGGACACCTCA	0.697													5	2					0	0	0.001168	0	0
TMC2	117532	broad.mit.edu	37	20	2582803	2582803	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:2582803C>T	uc002wgf.1	+	11	1284	c.1269C>T	c.(1267-1269)ATC>ATT	p.I423I	TMC2_uc002wgg.1_Silent_p.I407I|TMC2_uc010zpw.1_Silent_p.I255I|TMC2_uc010zpx.1_Silent_p.I254I	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	423	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						AAGAAAATATCCATCTGACAA	0.403													18	76					0	0	0.014323	0	0
PROKR2	128674	broad.mit.edu	37	20	5283169	5283169	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:5283169G>A	uc010zqw.1	-	2	672	c.672C>T	c.(670-672)TTC>TTT	p.F224F	PROKR2_uc010zqx.1_Silent_p.F224F|PROKR2_uc010zqy.1_Silent_p.F224F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	224	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AGATGAAGAGGAAGTAGGACT	0.537										HNSCC(71;0.22)			42	47					0	0	0.013114	0	0
PLCB1	23236	broad.mit.edu	37	20	8717804	8717804	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:8717804C>T	uc002wnb.2	+	20	2176	c.2173C>T	c.(2173-2175)CCT>TCT	p.P725S	PLCB1_uc010zrb.1_Missense_Mutation_p.P624S|PLCB1_uc002wna.2_Missense_Mutation_p.P725S|PLCB1_uc002wnc.1_Missense_Mutation_p.P624S|PLCB1_uc002wnd.1_Missense_Mutation_p.P302S	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	725	C2.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGCTGTGAATCCTGTCTGGGA	0.388													20	105					0	0	0.012319	0	0
SEL1L2	80343	broad.mit.edu	37	20	13830917	13830917	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:13830917G>A	uc010gcf.2	-	19	1949	c.1867C>T	c.(1867-1869)CCA>TCA	p.P623S	SEL1L2_uc002woq.3_Missense_Mutation_p.P484S|SEL1L2_uc010zrl.1_Missense_Mutation_p.P510S|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	623	Extracellular (Potential).|Sel1-like 11.					integral to membrane	binding			ovary(2)	2						TGGGCATCTGGACTCGTTTGA	0.453													30	96					0	0	0.003755	0	0
DHX35	60625	broad.mit.edu	37	20	37630380	37630380	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:37630380G>A	uc002xjh.2	+	9	661	c.650G>A	c.(649-651)CGG>CAG	p.R217Q	DHX35_uc010zwa.1_Missense_Mutation_p.R62Q|DHX35_uc010zwb.1_Missense_Mutation_p.R62Q|DHX35_uc010zwc.1_Missense_Mutation_p.R186Q	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	217	Helicase ATP-binding.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				TAGAAATTCCGGGATTTCTTT	0.323													22	103					0	0	0.014323	0	0
SLC13A3	64849	broad.mit.edu	37	20	45242260	45242260	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:45242260G>A	uc002xsf.1	-	2	254	c.216C>T	c.(214-216)TTC>TTT	p.F72F	SLC13A3_uc010ghn.1_Silent_p.F41F|SLC13A3_uc010zxw.1_Silent_p.F72F|SLC13A3_uc002xsg.1_Silent_p.F25F|SLC13A3_uc010gho.1_Silent_p.F25F|SLC13A3_uc010zxx.1_Intron|SLC13A3_uc002xsi.3_Silent_p.F25F	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	72	Helical; (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	AGATGCCCATGAAGGGGAAGA	0.607													10	8					0	0	0.010729	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47621705	47621705	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:47621705C>T	uc002xtx.3	+	26	3683	c.3531C>T	c.(3529-3531)TTC>TTT	p.F1177F	ARFGEF2_uc010zyf.1_Silent_p.F470F	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1177					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			TAGCCAACTTCCGTTTCCAGA	0.333													36	141					0	0	0.004289	0	0
KCNG1	3755	broad.mit.edu	37	20	49621205	49621205	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:49621205C>T	uc002xwa.3	-	3	1208	c.913G>A	c.(913-915)GAC>AAC	p.D305N		NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	305	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GCCACCAGGTCGATCAGCGTC	0.677													3	11					0	0	0.004672	0	0
PCK1	5105	broad.mit.edu	37	20	56136647	56136647	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:56136647G>A	uc002xyn.3	+	2	343	c.180G>A	c.(178-180)ATG>ATA	p.M60I	PCK1_uc010zzm.1_5'UTR	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	60					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			TGGGCCAGATGGAGGAAGAGG	0.602													17	86					0	0	0.008871	0	0
DIDO1	11083	broad.mit.edu	37	20	61528235	61528235	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:61528235G>A	uc002ydr.1	-	7	1966	c.1702C>T	c.(1702-1704)CCA>TCA	p.P568S	DIDO1_uc002yds.1_Missense_Mutation_p.P568S|DIDO1_uc002ydt.1_Missense_Mutation_p.P568S|DIDO1_uc002ydu.1_Missense_Mutation_p.P568S	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	568					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GACTTCTTTGGCACGAGGTTT	0.577													16	26					0	0	0.004007	0	0
YTHDF1	54915	broad.mit.edu	37	20	61834637	61834637	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:61834637T>A	uc002yeh.2	-	4	949	c.655A>T	c.(655-657)AAC>TAC	p.N219Y	YTHDF1_uc011aaq.1_Missense_Mutation_p.N169Y	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	219										ovary(2)	2						GTCCCACCGTTGCCAGAAAGG	0.562													7	56					0	0	0.003080	0	0
RTEL1	51750	broad.mit.edu	37	20	62298828	62298828	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr20:62298828C>T	uc002yfu.1	+	8	964	c.621C>T	c.(619-621)TGC>TGT	p.C207C	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Silent_p.C207C|RTEL1_uc011abd.1_Silent_p.C231C|RTEL1_uc002yfv.2_Silent_p.C257C|RTEL1_uc011abe.1_5'UTR|RTEL1_uc002yfw.2_RNA	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	207	Helicase ATP-binding.	Iron-sulfur (4Fe-4S) (By similarity).			DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			CCAGGGTGTGCCCTTACTACC	0.582													33	187					0	0	0.006999	0	0
Unknown	0	broad.mit.edu	37	21	9769050	9769050	+	RNA	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:9769050A>G	uc011abu.1	+	10		c.1025A>G								Homo sapiens, clone IMAGE:4720764, mRNA.																		GGAATTGATAACAAGAACAGC	0.333													10	12					0	0	0.002450	0	0
TPTE	7179	broad.mit.edu	37	21	10998216	10998216	+	RNA	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:10998216A>G	uc002yis.1	-	11		c.2037T>C						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CCTGGTCTGTATGGTTTCCTT	0.353													12	80					0	0	0.002450	0	0
TPTE	7179	broad.mit.edu	37	21	10998311	10998311	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:10998311C>T	uc002yis.1	-	11		c.1942G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTCTGATTTTCCATCACAATC	0.363													4	85					0	0	0.001984	0	0
TPTE	7179	broad.mit.edu	37	21	11014987	11014987	+	RNA	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:11014987A>G	uc002yis.1	-	7		c.1459T>C						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTATAGTTTCAATAGCAGACT	0.388													4	16					0	0	0.009096	0	0
LIPI	149998	broad.mit.edu	37	21	15517001	15517001	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:15517001G>A	uc002yjm.2	-	9	1311	c.1301C>T	c.(1300-1302)TCC>TTC	p.S434F		NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	413					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		TGTGCATGTGGAACACTGCAG	0.308													13	63					0	0	0.004990	0	0
NRIP1	8204	broad.mit.edu	37	21	16339140	16339140	+	Silent	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:16339140A>T	uc002yjx.2	-	4	1972	c.1374T>A	c.(1372-1374)GTT>GTA	p.V458V		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	458	Repression domain 2.|Required for targeting to small nuclear foci.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		TATCCAGGGAAACAGGTTGGT	0.403													21	100					0	0	0.002780	0	0
C21orf7	56911	broad.mit.edu	37	21	30521536	30521536	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:30521536C>T	uc002yne.2	+	6	668	c.397C>T	c.(397-399)CCT>TCT	p.P133S	C21orf7_uc011acr.1_RNA|C21orf7_uc002ynd.2_RNA|C21orf7_uc010gln.2_RNA|C21orf7_uc002ynf.2_Missense_Mutation_p.P133S|C21orf7_uc010glo.2_5'UTR|C21orf7_uc002yng.2_Missense_Mutation_p.P33S|C21orf7_uc010glp.2_RNA	NM_020152	NP_064537	P57077	TAK1L_HUMAN	chromosome 21 open reading frame 7	133						cytosol|nucleus	protein binding			ovary(2)	2				Colorectal(56;0.248)		AGACTCCATTCCTTTGGTCTT	0.423													26	66					0	0	0.004289	0	0
ABCG1	9619	broad.mit.edu	37	21	43693447	43693447	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:43693447G>A	uc002zaq.2	+	4	545	c.439G>A	c.(439-441)GGC>AGC	p.G147S	ABCG1_uc002zan.2_Missense_Mutation_p.G149S|ABCG1_uc002zam.2_Missense_Mutation_p.G125S|ABCG1_uc002zao.2_Missense_Mutation_p.G144S|ABCG1_uc002zap.2_Missense_Mutation_p.G147S|ABCG1_uc002zar.2_Missense_Mutation_p.G158S|ABCG1_uc011aev.1_Missense_Mutation_p.G158S	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	147	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	CCTCATCAACGGCCTGCCCCG	0.647													32	80					0	0	0.006230	0	0
RRP1B	23076	broad.mit.edu	37	21	45107925	45107925	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:45107925G>A	uc002zdk.2	+	13	1784	c.1670G>A	c.(1669-1671)GGG>GAG	p.G557E	RRP1B_uc002zdl.2_Missense_Mutation_p.G90E	NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	557					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		CCCGCAGAGGGGGCGAACAGC	0.662													9	13					0	0	0.006214	0	0
DNMT3L	29947	broad.mit.edu	37	21	45666334	45666334	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:45666334G>A	uc002zeg.1	-	12	1591	c.1107C>T	c.(1105-1107)CTC>CTT	p.L369L	DNMT3L_uc002zeh.1_Silent_p.L370L	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	369					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		CTCTTAGGGGGAGAAAGCAGT	0.448													9	48					0	0	0.006214	0	0
TRPM2	7226	broad.mit.edu	37	21	45802612	45802612	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr21:45802612C>T	uc002zet.1	+	10	1440	c.1227C>T	c.(1225-1227)ATC>ATT	p.I409I	TRPM2_uc002zeu.1_Silent_p.I409I|TRPM2_uc002zew.1_Silent_p.I409I|TRPM2_uc010gpt.1_Silent_p.I409I|TRPM2_uc002zex.1_Silent_p.I195I	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	409	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCCAAGATATCGTCCGGAGGC	0.562													11	18					0	0	0.010729	0	0
LOC96610	96610	broad.mit.edu	37	22	23223415	23223415	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:23223415C>T	uc011aim.1	+	334		c.14550C>T								Parts of antibodies, mostly variable regions.												0						GGCCAGTCCCCTGTGCTGGTC	0.562													41	44					0	0	0.009718	0	0
MMP11	4320	broad.mit.edu	37	22	24122860	24122860	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:24122860C>T	uc002zxx.2	+	4	596	c.574C>T	c.(574-576)CAC>TAC	p.H192Y	MMP11_uc002zxy.2_RNA|MMP11_uc002zxz.2_5'Flank	NM_005940	NP_005931	P24347	MMP11_HUMAN	matrix metalloproteinase 11 preproprotein	192		Zinc 1 (By similarity).			collagen catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|large_intestine(1)	3		Medulloblastoma(6;9.86e-08)|all_neural(6;0.000318)				AGGGGATGTCCACTTCGACTA	0.463													22	36					0	0	0.003330	0	0
EMID1	129080	broad.mit.edu	37	22	29628311	29628311	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:29628311C>T	uc003aen.2	+	8	812	c.737C>T	c.(736-738)CCT>CTT	p.P246L	EMID1_uc003aem.2_Missense_Mutation_p.P248L|EMID1_uc003aeo.2_Missense_Mutation_p.P248L|EMID1_uc003aep.2_Missense_Mutation_p.P248L	NM_133455	NP_597712	Q96A84	EMID1_HUMAN	EMI domain containing 1	246	Collagen-like.					collagen					0						GAGAGGGGACCTCCTGGGCCA	0.697													24	11					0	0	0.003330	0	0
APOL1	8542	broad.mit.edu	37	22	36651026	36651026	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:36651026G>A	uc003apf.2	+	2	193	c.25G>A	c.(25-27)GTC>ATC	p.V9I	APOL1_uc011amn.1_5'UTR|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Missense_Mutation_p.V25I|APOL1_uc011amo.1_Intron|APOL1_uc011amp.1_Missense_Mutation_p.V9I|APOL1_uc011amq.1_Missense_Mutation_p.V9I|APOL1_uc010gwx.2_5'UTR	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	9					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						TTTGCTGAGAGTCTCTGTCCT	0.597													36	47					0	0	0.006999	0	0
NCF4	4689	broad.mit.edu	37	22	37273673	37273673	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:37273673G>A	uc003apy.3	+	10	1012	c.828G>A	c.(826-828)CGG>CGA	p.R276R	NCF4_uc003apz.3_3'UTR	NM_000631	NP_000622	Q15080	NCF4_HUMAN	neutrophil cytosolic factor 4 isoform 1	276					cell communication|immune response|oxidation-reduction process	cytosol|NADPH oxidase complex	phosphatidylinositol binding|protein dimerization activity			ovary(1)	1						CATGCAGGCGGGAGTTCCAGA	0.552													13	57					0	0	0.003163	0	0
RPL3	6122	broad.mit.edu	37	22	39713525	39713525	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:39713525G>A	uc003axi.2	-	3	374	c.306C>T	c.(304-306)TTC>TTT	p.F102F	RPL3_uc003axh.2_Silent_p.F102F|RPL3_uc003axj.2_5'UTR|RPL3_uc011aoj.1_Silent_p.F102F|RPL3_uc010gxx.2_Silent_p.F50F|RPL3_uc003axg.2_Silent_p.F50F|RPL3_uc003axk.1_5'UTR	NM_000967	NP_000958	P39023	RL3_HUMAN	ribosomal protein L3 isoform a	102					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome			breast(1)|kidney(1)	2	Melanoma(58;0.04)					AGACAGTCTTGAAGGTCCGGA	0.542													70	152					0	0	0.014410	0	0
SYNGR1	9145	broad.mit.edu	37	22	39746024	39746024	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:39746024G>A	uc003axq.3	+	1	71	c.9G>A	c.(7-9)GGG>GGA	p.G3G	SYNGR1_uc003axo.3_Silent_p.G3G|SYNGR1_uc003axp.3_5'UTR|TAB1_uc003axr.2_5'UTR	NM_004711	NP_004702	O43759	SNG1_HUMAN	synaptogyrin 1 isoform 1a	3					regulation of long-term neuronal synaptic plasticity|regulation of short-term neuronal synaptic plasticity	cell junction|integral to plasma membrane|melanosome					0	Melanoma(58;0.04)					CGATGGAAGGGGGTGCGTACG	0.507													5	13					0	0	0.001984	0	0
UPK3A	7380	broad.mit.edu	37	22	45683229	45683229	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:45683229C>T	uc003bfy.2	+	3	391	c.385C>T	c.(385-387)CTG>TTG	p.L129L	UPK3A_uc010gzy.2_Intron	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	129	Lumenal (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		CTCACAGATCCTGAATGCCTA	0.612													6	30					0	0	0.004482	0	0
CELSR1	9620	broad.mit.edu	37	22	46795748	46795748	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:46795748C>A	uc003bhw.1	-	10	5278	c.5278G>T	c.(5278-5280)GAG>TAG	p.E1760*	CELSR1_uc011arc.1_Nonsense_Mutation_p.E81*	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1760	Extracellular (Potential).|Laminin G-like 2.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ATCACGGACTCCACATCGGAG	0.562													32	60					2.80507e-11	2.85255e-11	0.012213	1	0
GRAMD4	23151	broad.mit.edu	37	22	47068739	47068739	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:47068739G>A	uc003bhx.2	+	13	1124	c.1085_splice	c.e13-1	p.G362_splice	GRAMD4_uc010had.2_Splice_Site_p.G301_splice|GRAMD4_uc003bhy.2_5'Flank	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein						apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		CCTGCCCTCAGGACTCTATGC	0.557													6	46					0	0	0.001984	0	0
TTLL8	164714	broad.mit.edu	37	22	50471708	50471708	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:50471708G>A	uc011ark.1	-	10	1206	c.1206C>T	c.(1204-1206)AAC>AAT	p.N402N		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		TGGTCAGGGGGTTCCAGTCCG	0.567													5	23					0	0	0.000602	0	0
KLHDC7B	113730	broad.mit.edu	37	22	50988169	50988170	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:50988169_50988170CC>TT	uc003bmi.2	+	1	1708_1709	c.1574_1575CC>TT	c.(1573-1575)CCC>CTT	p.P525L		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	525	Kelch 5.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCCTCCCTGCCCCTGCCCGCCC	0.693													5	29					0	0	0.004672	0	0
CHKB	1120	broad.mit.edu	37	22	51019885	51019885	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr22:51019885G>A	uc003bms.2	-	4	763	c.545C>T	c.(544-546)ACC>ATC	p.T182I	CPT1B_uc003bmo.2_5'Flank|CPT1B_uc011asa.1_5'Flank|CPT1B_uc003bmn.2_5'Flank|CPT1B_uc011asb.1_5'Flank|CHKB-CPT1B_uc003bmp.2_5'Flank|CHKB-CPT1B_uc003bmt.1_Intron|CHKB-CPT1B_uc003bmu.2_Missense_Mutation_p.T61I|CHKB_uc003bmv.2_Missense_Mutation_p.T182I|LOC100144603_uc003bmw.3_5'Flank	NM_005198	NP_005189	Q9Y259	CHKB_HUMAN	choline kinase beta	182					phosphatidylethanolamine biosynthetic process		ATP binding|choline kinase activity|ethanolamine kinase activity				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;4.04e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.79e-74)|Epithelial(4;6.17e-70)|GBM - Glioblastoma multiforme(4;5.68e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.205)	Choline(DB00122)	GGGCTCCTTGGTGAAAGGCAT	0.567													11	29					0	0	0.001855	0	0
CHL1	10752	broad.mit.edu	37	3	367654	367654	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:367654C>T	uc003bou.2	+	4	375	c.104C>T	c.(103-105)CCA>CTA	p.P35L	CHL1_uc003bot.2_Missense_Mutation_p.P35L|CHL1_uc003bow.1_Missense_Mutation_p.P35L|CHL1_uc011asi.1_Missense_Mutation_p.P35L	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	35	Ig-like C2-type 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CAACAGGTTCCAACAATCATA	0.333													12	54					0	0	0.001855	0	0
RAD18	56852	broad.mit.edu	37	3	8983221	8983221	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:8983221G>A	uc003brd.2	-	5	611	c.534C>T	c.(532-534)ATC>ATT	p.I178I	RAD18_uc003bre.2_RNA	NM_020165	NP_064550	Q9NS91	RAD18_HUMAN	postreplication repair protein hRAD18p	178					DNA repair	nucleus|replication fork	damaged DNA binding|ligase activity|ubiquitin protein ligase binding|Y-form DNA binding|zinc ion binding			skin(3)|ovary(2)	5				OV - Ovarian serous cystadenocarcinoma(96;0.0552)		GATCTGGAGCGATCTCTTCTA	0.428								Rad6_pathway					12	15					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	3	12299838	12299838	+	RNA	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:12299838G>A	uc003bwp.1	-	1		c.115C>T				NR_003112				NR_003112																		GTCATAGTCAGGAGAGTCCCC	0.507													34	76					0	0	0.003755	0	0
NUP210	23225	broad.mit.edu	37	3	13401823	13401823	+	Silent	SNP	G	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:13401823G>T	uc003bxv.1	-	15	2184	c.2101C>A	c.(2101-2103)CGG>AGG	p.R701R	NUP210_uc003bxx.2_Silent_p.R373R	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	701	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TGATAATTCCGGGAGGAATGG	0.592													11	22					4.36969e-10	4.43739e-10	0.001855	1	0
FGD5	152273	broad.mit.edu	37	3	14861750	14861750	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:14861750G>A	uc003bzc.2	+	1	1282	c.1172G>A	c.(1171-1173)GGG>GAG	p.G391E	FGD5_uc011avk.1_Missense_Mutation_p.G391E	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	391					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CCCATGGTGGGGGCTTTGTGT	0.612													11	29					0	0	0.010729	0	0
SCN5A	6331	broad.mit.edu	37	3	38592138	38592138	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:38592138G>A	uc003cio.2	-	28	5919	c.5725C>T	c.(5725-5727)CAG>TAG	p.Q1909*	SCN5A_uc003cin.2_Nonsense_Mutation_p.Q1908*|SCN5A_uc003cil.3_Nonsense_Mutation_p.Q1909*|SCN5A_uc010hhi.2_Nonsense_Mutation_p.Q1891*|SCN5A_uc010hhk.2_Nonsense_Mutation_p.Q1876*|SCN5A_uc011ayr.1_Nonsense_Mutation_p.Q1855*	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1909	IQ.				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	AAGGCTCTCTGGATAACCATG	0.612													17	76					0	0	0.007413	0	0
XIRP1	165904	broad.mit.edu	37	3	39225929	39225929	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:39225929G>A	uc003cjk.1	-	2	5229	c.5008C>T	c.(5008-5010)CCA>TCA	p.P1670S	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.P353S	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1670							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		ATAAATGTTGGGGAGGAGGGA	0.537													22	76					0	0	0.002780	0	0
HHATL	57467	broad.mit.edu	37	3	42734363	42734363	+	Silent	SNP	G	A	A	rs17852071		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:42734363G>A	uc003clw.2	-	13	1542	c.1395C>T	c.(1393-1395)TTC>TTT	p.F465F	HHATL_uc003clx.2_Silent_p.F465F	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	465	Helical; (Potential).				negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		TGGTCTGGGGGAACCCTGTGT	0.602													15	44					0	0	0.004007	0	0
ZNF445	353274	broad.mit.edu	37	3	44490172	44490172	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:44490172C>T	uc003cnf.2	-	8	1339	c.991G>A	c.(991-993)GCA>ACA	p.A331T	ZNF445_uc011azv.1_Missense_Mutation_p.A319T|ZNF445_uc011azw.1_Missense_Mutation_p.A331T	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	331					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		AAGGTTTCTGCTTCTTCCAAA	0.408													12	29					0	0	0.001855	0	0
CCR5	1234	broad.mit.edu	37	3	46414783	46414783	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:46414783C>T	uc003cpo.3	+	3	512	c.390C>T	c.(388-390)GTC>GTT	p.V130V	CCR5_uc010hjd.2_Silent_p.V130V	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	130	Cytoplasmic (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	ACCTGGCTGTCGTCCATGCTG	0.478													43	139					0	0	0.014410	0	0
COL7A1	1294	broad.mit.edu	37	3	48617056	48617056	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:48617056C>T	uc003ctz.2	-	58	5201	c.5200G>A	c.(5200-5202)GGT>AGT	p.G1734S	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1734	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCAGGATCACCCTTGGGCCCT	0.627													7	23					0	0	0.004482	0	0
CELSR3	1951	broad.mit.edu	37	3	48680281	48680281	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:48680281C>A	uc003cul.2	-	30	8724	c.8443G>T	c.(8443-8445)GAG>TAG	p.E2815*	CELSR3_uc003cuf.1_Nonsense_Mutation_p.E2913*|CELSR3_uc010hkf.2_Nonsense_Mutation_p.E105*|CELSR3_uc010hkg.2_Nonsense_Mutation_p.E798*	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2815	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AGGCCACTCTCCTCAAAGAGA	0.642													18	48					8.10497e-08	8.20742e-08	0.010504	1	0
DALRD3	55152	broad.mit.edu	37	3	49053042	49053042	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:49053042G>A	uc003cvk.1	-	12	1631	c.1611C>T	c.(1609-1611)CTC>CTT	p.L537L	WDR6_uc003cvj.2_3'UTR|WDR6_uc011bby.1_3'UTR|WDR6_uc010hkn.2_3'UTR|WDR6_uc011bbz.1_3'UTR|DALRD3_uc003cvl.1_3'UTR|DALRD3_uc003cvm.1_Silent_p.L370L|DALRD3_uc010hko.1_3'UTR	NM_001009996	NP_001009996	Q5D0E6	DALD3_HUMAN	DALR anticodon binding domain containing 3	537					arginyl-tRNA aminoacylation	cytoplasm	arginine-tRNA ligase activity|ATP binding				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		TCAGTGGAGGGAGACCCAGCA	0.522													36	76					0	0	0.010771	0	0
TWF2	11344	broad.mit.edu	37	3	52263075	52263076	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:52263075_52263076GG>AA	uc003ddd.2	-	9	1175_1176	c.1024_1025CC>TT	c.(1024-1026)CCG>TTG	p.P342L	TLR9_uc003dda.1_5'Flank|TLR9_uc003ddb.2_Intron|TLR9_uc003ddc.1_Intron|TWF2_uc010hmc.2_3'UTR	NM_007284	NP_009215	Q6IBS0	TWF2_HUMAN	twinfilin-like protein	342						cytoskeleton|perinuclear region of cytoplasm	actin binding|ATP binding			stomach(1)|ovary(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;2.43e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		ATTTTCACCCGGGCCGCGGATG	0.673													20	41					0	0	0.004672	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54913092	54913092	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:54913092G>A	uc003dhf.2	+	19	1806	c.1758G>A	c.(1756-1758)GAG>GAA	p.E586E	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.E492E|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.E320E|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	586	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TTTCCATGGAGGTGAAGAAGA	0.353													5	23					0	0	0.001168	0	0
LRTM1	57408	broad.mit.edu	37	3	54952557	54952557	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:54952557C>T	uc003dhl.2	-	3	1101	c.967G>A	c.(967-969)GGA>AGA	p.G323R	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	323	Cytoplasmic (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		GCCAAGGGTCCCCCATGGTAC	0.507													46	116					0	0	0.014410	0	0
POU1F1	5449	broad.mit.edu	37	3	87311363	87311363	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:87311363C>T	uc003dqq.1	-	4	587	c.462G>A	c.(460-462)GGG>GGA	p.G154G	POU1F1_uc010hoj.1_Silent_p.G180G	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	154	POU-specific.				negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		CCAGGGCCTCCCCAACATTTG	0.428													17	85					0	0	0.010504	0	0
HTR1F	3355	broad.mit.edu	37	3	88040274	88040274	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:88040274C>T	uc003dqr.2	+	2	533	c.375C>T	c.(373-375)ATC>ATT	p.I125I		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	125	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	ATCGAGCAATCACAGATGCTG	0.443													21	51					0	0	0.005443	0	0
COL8A1	1295	broad.mit.edu	37	3	99513128	99513128	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:99513128C>T	uc003dtg.1	+	5	628	c.383C>T	c.(382-384)CCA>CTA	p.P128L	COL8A1_uc003dth.1_Missense_Mutation_p.P128L|COL8A1_uc003dti.1_Missense_Mutation_p.P129L	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	128	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GAGCCTGGCCCAAGAGGACCA	0.552													5	13					0	0	0.000602	0	0
SLC9A10	285335	broad.mit.edu	37	3	111873846	111873846	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:111873846C>T	uc003dyu.2	-	27	3637	c.3415G>A	c.(3415-3417)GAG>AAG	p.E1139K	SLC9A10_uc011bhu.1_Missense_Mutation_p.E402K|SLC9A10_uc010hqc.2_Missense_Mutation_p.E1091K	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	1139					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						AAATTTACCTCCTTAACATTT	0.313													11	46					0	0	0.002450	0	0
POLQ	10721	broad.mit.edu	37	3	121208660	121208660	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:121208660G>A	uc003eee.3	-	16	3247	c.3118C>T	c.(3118-3120)CGA>TGA	p.R1040*	POLQ_uc003eed.2_Nonsense_Mutation_p.R212*	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1040					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TTCCAAGATCGAAAACTTCTG	0.408								DNA_polymerases_(catalytic_subunits)					12	50					0	0	0.013537	0	0
GOLGB1	2804	broad.mit.edu	37	3	121413940	121413940	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:121413940C>T	uc003eei.3	-	13	5541	c.5415G>A	c.(5413-5415)ATG>ATA	p.M1805I	GOLGB1_uc010hrc.2_Missense_Mutation_p.M1810I|GOLGB1_uc003eej.3_Missense_Mutation_p.M1771I|GOLGB1_uc011bjm.1_Missense_Mutation_p.M1691I|GOLGB1_uc010hrd.1_Missense_Mutation_p.M1769I	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1805	Cytoplasmic (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		GTCTTGTGCTCATACTCAGAG	0.448													52	145					0	0	0.014410	0	0
ADCY5	111	broad.mit.edu	37	3	123010056	123010056	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:123010056G>A	uc003egh.1	-	18	3231	c.3231C>T	c.(3229-3231)ATC>ATT	p.I1077I	ADCY5_uc003egg.1_Silent_p.I735I	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1077	Cytoplasmic (Potential).|Guanylate cyclase 2.				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		AGAAGTTGGCGATGGAGGCGA	0.582													16	56					0	0	0.006122	0	0
PLXND1	23129	broad.mit.edu	37	3	129284279	129284280	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:129284279_129284280GG>AA	uc003emx.2	-	25	4524_4525	c.4424_4425CC>TT	c.(4423-4425)GCC>GTT	p.A1475V	PLXND1_uc011blb.1_Missense_Mutation_p.A143V	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1475	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						GGTTCTTGGCGGCCGAGGCGTC	0.599													18	51					0	0	0.004672	0	0
TMCC1	23023	broad.mit.edu	37	3	129546986	129546986	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:129546986G>A	uc003emz.3	-	4	737	c.236C>T	c.(235-237)CCT>CTT	p.P79L	TMCC1_uc010htg.2_Intron	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	79						integral to membrane				skin(1)	1						ATCCATTTCAGGTTCTGGATC	0.532													21	46					0	0	0.010504	0	0
MLF1	4291	broad.mit.edu	37	3	158317861	158317861	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:158317861T>A	uc003fcb.2	+	5	604	c.467T>A	c.(466-468)ATT>AAT	p.I156N	MLF1_uc003fbz.2_Missense_Mutation_p.I131N|MLF1_uc003fca.2_Missense_Mutation_p.I131N|MLF1_uc003fbx.2_Missense_Mutation_p.I146N|MLF1_uc003fcc.2_Missense_Mutation_p.I187N|MLF1_uc003fby.2_Missense_Mutation_p.I82N|MLF1_uc010hvx.2_Missense_Mutation_p.I88N	NM_022443	NP_071888	P58340	MLF1_HUMAN	myeloid leukemia factor 1 isoform 1	156					cell cycle arrest|myeloid progenitor cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein domain specific binding				0		Melanoma(1037;0.000458)|Prostate(884;0.0235)|all_neural(597;0.0299)	Lung(72;0.00199)|LUSC - Lung squamous cell carcinoma(72;0.00256)			AAAATGGCTATTGGTCATCAT	0.313			T	NPM1	AML								31	68					0	0	0.013726	0	0
AHSG	197	broad.mit.edu	37	3	186330964	186330964	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:186330964C>T	uc003fqk.3	+	1	115	c.34C>T	c.(34-36)CAG>TAG	p.Q12*	AHSG_uc003fqj.2_Nonsense_Mutation_p.Q12*|AHSG_uc003fql.3_Nonsense_Mutation_p.Q12*|AHSG_uc003fqm.3_Nonsense_Mutation_p.Q12*|AHSG_uc010hyp.2_Nonsense_Mutation_p.Q12*	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	12					acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		TTGTCTTGCTCAGCTCTGGGG	0.602													12	30					0	0	0.001855	0	0
EIF4A2	1974	broad.mit.edu	37	3	186504350	186504350	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:186504350G>A	uc003fqs.2	+	7	726	c.687G>A	c.(685-687)ATG>ATA	p.M229I	EIF4A2_uc003fqt.2_RNA|EIF4A2_uc003fqu.2_Missense_Mutation_p.M230I|EIF4A2_uc003fqv.2_Missense_Mutation_p.M134I|EIF4A2_uc003fqw.2_Missense_Mutation_p.M134I|EIF4A2_uc011bsb.1_Missense_Mutation_p.M102I|MIR1248_hsa-mir-1248|MI0006383_5'Flank|SNORA81_uc010hyv.1_5'Flank|SNORA63_uc010hyw.1_5'Flank|SNORA4_uc010hyx.1_5'Flank	NM_001967	NP_001958	Q14240	IF4A2_HUMAN	eukaryotic translation initiation factor 4A2	229	Helicase ATP-binding.				interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|protein binding|translation initiation factor activity			ovary(2)|breast(2)	4	all_cancers(143;2.68e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.07e-20)	GBM - Glioblastoma multiforme(93;0.0704)		AAAAATTCATGAGAGATCCAA	0.353			T	BCL6	NHL								11	61					0	0	0.013537	0	0
PAK2	5062	broad.mit.edu	37	3	196554126	196554126	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:196554126C>T	uc003fwy.3	+	14	1732	c.1410C>T	c.(1408-1410)TCC>TCT	p.S470S		NM_002577	NP_002568	Q13177	PAK2_HUMAN	p21-activated kinase 2	470	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of apoptosis|regulation of defense response to virus by virus|regulation of growth|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|nucleus|perinuclear region of cytoplasm|plasma membrane	ATP binding|identical protein binding|protein kinase binding|protein serine/threonine kinase activity|protein tyrosine kinase activator activity			ovary(1)|lung(1)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;6.38e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00405)		AGAAACTTTCCCCAATATTTC	0.348													25	45					0	0	0.006320	0	0
MYL5	4636	broad.mit.edu	37	4	672496	672496	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:672496G>A	uc003gav.2	+	2	158	c.53G>A	c.(52-54)AGA>AAA	p.R18K	MYL5_uc003gat.2_RNA|MYL5_uc003gau.2_RNA	NM_002477	NP_002468	Q02045	MYL5_HUMAN	myosin regulatory light chain 5	18					regulation of muscle contraction	muscle myosin complex	calcium ion binding|structural constituent of muscle				0						CGGGCCCAGAGAGCCTCATCC	0.607													6	7					0	0	0.003080	0	0
POLN	353497	broad.mit.edu	37	4	2087471	2087471	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:2087471C>T	uc003ger.2	-	19	2066	c.2066G>A	c.(2065-2067)GGG>GAG	p.G689E	POLN_uc010icg.1_Missense_Mutation_p.G137E|POLN_uc010ich.1_Missense_Mutation_p.G221E	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	689					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			CCGCTCCTTCCCTGTCAGTCA	0.527								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					23	70					0	0	0.003330	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2275814	2275814	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:2275814G>A	uc003gex.1	-	9	2500	c.2181C>T	c.(2179-2181)ATC>ATT	p.I727I	ZFYVE28_uc011bvk.1_Silent_p.I657I|ZFYVE28_uc011bvl.1_Silent_p.I697I|ZFYVE28_uc003gew.1_Silent_p.I613I	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	727					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						ACAGGCGGTGGATGAGGTCGT	0.642													16	50					0	0	0.007413	0	0
GRK4	2868	broad.mit.edu	37	4	3040189	3040189	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:3040189C>T	uc003ggn.1	+	15	2087	c.1632C>T	c.(1630-1632)ACC>ACT	p.T544T	GRK4_uc003ggo.1_Intron|GRK4_uc003ggp.1_Silent_p.T512T|GRK4_uc003ggq.1_Intron	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	544						cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ACATACATACCCCGGTTTCCA	0.373													19	57					0	0	0.007413	0	0
ADRA2C	152	broad.mit.edu	37	4	3769665	3769665	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:3769665C>T	uc003ghm.2	+	1	1370	c.1332C>T	c.(1330-1332)TTC>TTT	p.F444F	ADRA2C_uc010icx.2_Intron	NM_000683	NP_000674	P18825	ADA2C_HUMAN	alpha-2C-adrenergic receptor	444	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation|regulation of insulin secretion	endosome|integral to plasma membrane	alpha-2A adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|protein heterodimerization activity|protein homodimerization activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)	Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	ACCAGGATTTCCGGCGATCCT	0.607													7	24					0	0	0.004482	0	0
DRD5	1816	broad.mit.edu	37	4	9784092	9784092	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:9784092C>T	uc003gmb.3	+	1	835	c.439C>T	c.(439-441)CGC>TGC	p.R147C		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	147	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CAGGCCCTTCCGCTACAAGCG	0.597													3	15					0	0	0.004672	0	0
HS3ST1	9957	broad.mit.edu	37	4	11400858	11400858	+	Missense_Mutation	SNP	G	A	A	rs149248520		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:11400858G>A	uc003gmq.2	-	2	1095	c.772C>T	c.(772-774)CGG>TGG	p.R258W		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	258						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						CCGCTGTCCCGCAGGCAGTAA	0.512													13	48					0	0	0.002450	0	0
SLIT2	9353	broad.mit.edu	37	4	20493417	20493417	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:20493417T>C	uc003gpr.1	+	9	1013	c.809T>C	c.(808-810)GTT>GCT	p.V270A	SLIT2_uc003gps.1_Missense_Mutation_p.V270A	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	270	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TCTTGTAGTGTTTTGCACTGC	0.413													19	103					0	0	0.014323	0	0
SLC34A2	10568	broad.mit.edu	37	4	25675922	25675922	+	Silent	SNP	C	T	T	rs146575036		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:25675922C>T	uc003grr.2	+	11	1302	c.1221C>T	c.(1219-1221)TTC>TTT	p.F407F	SLC34A2_uc003grs.2_Silent_p.F406F|SLC34A2_uc010iev.2_Silent_p.F406F	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	407	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity	p.F407F(1)		skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TTCCAGATTTCCCCTTTCCCT	0.577													14	35					0	0	0.001855	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351005	40351005	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:40351005G>A	uc003gva.1	+	4	488	c.472G>A	c.(472-474)GAT>AAT	p.D158N		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	158	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	CTGTGTGGTGGATGTCACCTA	0.512													29	98					0	0	0.010818	0	0
RBM47	54502	broad.mit.edu	37	4	40440440	40440440	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:40440440C>T	uc003gvc.2	-	4	1181	c.471G>A	c.(469-471)GGG>GGA	p.G157G	RBM47_uc003gvd.2_Silent_p.G157G|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.G119G|RBM47_uc003gvg.1_Silent_p.G157G	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	157	RRM 2.					nucleus	nucleotide binding|RNA binding			breast(3)	3						TCTTGGGGATCCCGCCGATGA	0.642													21	38					0	0	0.003330	0	0
GABRA2	2555	broad.mit.edu	37	4	46252598	46252598	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:46252598C>T	uc003gxc.3	-	9	1756	c.1083G>A	c.(1081-1083)ATG>ATA	p.M361I	GABRA2_uc010igc.2_Missense_Mutation_p.M361I|GABRA2_uc011bzc.1_Missense_Mutation_p.M366I	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	361	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGTTCTGTATCATAACGGAAG	0.398													13	46					0	0	0.003163	0	0
NFXL1	152518	broad.mit.edu	37	4	47905220	47905220	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:47905220G>A	uc010igh.2	-	5	814	c.637C>T	c.(637-639)CCC>TCC	p.P213S	NFXL1_uc003gxp.2_Missense_Mutation_p.P213S|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.P213S	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	213	RING-type; atypical.					integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						CAAGGCCAGGGACAATCTTTC	0.259													19	44					0	0	0.007413	0	0
UGT2B7	7364	broad.mit.edu	37	4	69973959	69973959	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:69973959G>A	uc003heg.3	+	5	1275	c.1229G>A	c.(1228-1230)GGA>GAA	p.G410E	UGT2B7_uc010ihq.2_Intron	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	410					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AAGGCCAGGGGAGCAGCTGTT	0.448													43	186					0	0	0.013114	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361571	70361571	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:70361571C>T	uc003hek.3	-	1	56	c.9G>A	c.(7-9)ATG>ATA	p.M3I	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.M3I	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	3					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AAGTCCATTTCATAGACATCC	0.443													50	159					0	0	0.014410	0	0
UGT2A1	10941	broad.mit.edu	37	4	70464999	70464999	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:70464999C>T	uc003hem.3	-	2	892	c.829G>A	c.(829-831)GGA>AGA	p.G277R	UGT2A1_uc011caq.1_Missense_Mutation_p.G487R|UGT2A1_uc010ihu.2_Missense_Mutation_p.G321R|UGT2A1_uc010iht.2_Missense_Mutation_p.G277R|UGT2A1_uc010ihs.2_Missense_Mutation_p.G278R	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	277	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						CAGTGCAATCCTCCAACAAAC	0.353													5	27					0	0	0.000602	0	0
PROL1	58503	broad.mit.edu	37	4	71275098	71275098	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:71275098C>T	uc003hfi.2	+	3	227	c.53C>T	c.(52-54)CCC>CTC	p.P18L		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	18					regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				TCTCCACAGCCCAGTGAGAGT	0.393													6	27					0	0	0.001984	0	0
AMBN	258	broad.mit.edu	37	4	71467313	71467313	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:71467313G>A	uc003hfl.2	+	6	548	c.473G>A	c.(472-474)GGA>GAA	p.G158E		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	158					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			TTGCAGGAAGGAGAACTGCCT	0.522											OREG0016218	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	83					0	0	0.006320	0	0
BMP3	651	broad.mit.edu	37	4	81967008	81967008	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:81967008A>C	uc003hmg.3	+	2	753	c.433A>C	c.(433-435)AGT>CGT	p.S145R		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	145					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						CATCAGCCTGAGTTGTCCAGT	0.433													14	71					0	0	0.003163	0	0
PRKG2	5593	broad.mit.edu	37	4	82031727	82031727	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:82031727C>T	uc003hmh.2	-	14	1829	c.1815G>A	c.(1813-1815)CAG>CAA	p.Q605Q	PRKG2_uc011ccf.1_Silent_p.Q185Q|PRKG2_uc011ccg.1_Silent_p.Q185Q|PRKG2_uc011cch.1_Silent_p.Q576Q	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	605	Protein kinase.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TCCATGTTTTCTGTCCAGACC	0.418													17	47					0	0	0.012319	0	0
AFF1	4299	broad.mit.edu	37	4	88053460	88053460	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:88053460C>T	uc003hqj.3	+	18	3597	c.3190C>T	c.(3190-3192)CGT>TGT	p.R1064C	AFF1_uc011ccz.1_Missense_Mutation_p.R1071C|AFF1_uc003hqk.3_Missense_Mutation_p.R1064C|AFF1_uc011cda.1_Missense_Mutation_p.R702C	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1064						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		GGCGATGTTTCGTTGTAAAAA	0.413													12	41					0	0	0.013537	0	0
IBSP	3381	broad.mit.edu	37	4	88732673	88732673	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:88732673G>A	uc003hqx.3	+	7	663	c.565G>A	c.(565-567)GGC>AGC	p.G189S		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	189					biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		GGCAGAAAACGGCAACGGCAG	0.423													8	39					0	0	0.003080	0	0
SPRY1	10252	broad.mit.edu	37	4	124323559	124323559	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:124323559C>T	uc003ifa.2	+	2	1001	c.813C>T	c.(811-813)CTC>CTT	p.L271L	SPRY1_uc003ifb.2_Silent_p.L271L	NM_199327	NP_955359	O43609	SPY1_HUMAN	sprouty homolog 1, antagonist of FGF signaling	271	Cys-rich.|SPR.				epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|lamellipodium|plasma membrane				skin(2)|ovary(1)	3						CTTGCTTACTCTGTTATCCTC	0.458													24	75					0	0	0.002780	0	0
PCDH18	54510	broad.mit.edu	37	4	138450990	138450990	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:138450990G>A	uc003ihe.3	-	1	2640	c.2253C>T	c.(2251-2253)TCC>TCT	p.S751S	PCDH18_uc003ihf.3_Silent_p.S744S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.S531S|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	751	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GAATCTGCCGGGATGGCCTTT	0.488													26	49					0	0	0.004878	0	0
LRBA	987	broad.mit.edu	37	4	151231397	151231397	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:151231397G>A	uc010ipj.2	-	53	8340	c.7866C>T	c.(7864-7866)GTC>GTT	p.V2622V	LRBA_uc010ipi.2_Silent_p.V144V|LRBA_uc003ils.3_Silent_p.V517V|LRBA_uc003ilt.3_Silent_p.V1270V|LRBA_uc003ilu.3_Silent_p.V2611V|LRBA_uc003ilr.3_Silent_p.V42V	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2622	WD 2.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					CTGTAGAATAGACTCTGAAAC	0.368													13	42					0	0	0.013537	0	0
FNIP2	57600	broad.mit.edu	37	4	159789428	159789428	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:159789428T>C	uc003iqe.3	+	13	1823	c.1640T>C	c.(1639-1641)GTT>GCT	p.V547A		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	547	Interaction with PRKAA1.				DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		GGTGACCAAGTTTTAAATGGG	0.498													11	36					0	0	0.013537	0	0
ANP32C	23520	broad.mit.edu	37	4	165118777	165118777	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:165118777C>T	uc011cjk.1	-	1	87	c.87G>A	c.(85-87)TCG>TCA	p.S29S	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	29											0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		TGCCTTCATTCGACCGACTGT	0.493													52	155					0	0	0.014410	0	0
GK3P	2713	broad.mit.edu	37	4	166199580	166199580	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:166199580C>T	uc003ird.3	-	1	1596	c.1218G>A	c.(1216-1218)GAG>GAA	p.E406E	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						CATCCAAAATCTCTCGAGTTT	0.433													21	82					0	0	0.004656	0	0
CPE	1363	broad.mit.edu	37	4	166388935	166388935	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:166388935G>A	uc003irg.3	+	3	877	c.600G>A	c.(598-600)GTG>GTA	p.V200V		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	200					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TAGTGTACGTGAATGAGAAAG	0.433													13	53					0	0	0.001855	0	0
TLL1	7092	broad.mit.edu	37	4	166914029	166914029	+	Silent	SNP	T	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:166914029T>A	uc003irh.1	+	3	1001	c.354T>A	c.(352-354)ATT>ATA	p.I118I	TLL1_uc011cjn.1_Silent_p.I118I|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	118					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TAAGAAGAATTGGCTTTGGTA	0.363													9	41					0	0	0.004482	0	0
ODZ3	55714	broad.mit.edu	37	4	183652273	183652273	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:183652273C>T	uc003ivd.1	+	15	2985	c.2948C>T	c.(2947-2949)CCC>CTC	p.P983L	ODZ3_uc003ive.1_Missense_Mutation_p.P389L	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	983	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GAAGACAGTCCCATCATTCCC	0.398													4	42					0	0	0.009096	0	0
MLF1IP	79682	broad.mit.edu	37	4	185637552	185637552	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:185637552G>A	uc003iwq.2	-	6	687	c.617C>T	c.(616-618)TCG>TTG	p.S206L	MLF1IP_uc003iwp.2_RNA|MLF1IP_uc003iwr.1_Missense_Mutation_p.S206L	NM_024629	NP_078905	Q71F23	CENPU_HUMAN	MLF1 interacting protein	206					CenH3-containing nucleosome assembly at centromere|interspecies interaction between organisms|mitotic prometaphase|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|condensed chromosome kinetochore|cytosol|nucleoplasm					0		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Hepatocellular(41;0.000519)|Colorectal(36;0.00172)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.0299)|all_hematologic(60;0.0592)|Medulloblastoma(177;0.146)		all cancers(43;7.83e-28)|Epithelial(43;2.56e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-11)|Colorectal(24;3.27e-06)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.16e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000252)|COAD - Colon adenocarcinoma(29;0.000512)|LUSC - Lung squamous cell carcinoma(40;0.01)|READ - Rectum adenocarcinoma(43;0.0419)		CGTTCTTACCGATTGACTTTC	0.408													7	22					0	0	0.003080	0	0
ACSL1	2180	broad.mit.edu	37	4	185678843	185678843	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr4:185678843G>A	uc003iww.2	-	20	2196	c.1902C>T	c.(1900-1902)ATC>ATT	p.I634I	ACSL1_uc011ckm.1_Silent_p.I463I|ACSL1_uc003iwt.1_Silent_p.I634I|ACSL1_uc003iwu.1_Silent_p.I634I|ACSL1_uc011ckn.1_Silent_p.I600I|ACSL1_uc003iws.1_Silent_p.I194I	NM_001995	NP_001986	P33121	ACSL1_HUMAN	acyl-CoA synthetase long-chain family member 1	634	Cytoplasmic (Potential).				digestion|fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|regulation of fatty acid oxidation|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			ovary(2)	2		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00172)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0315)|all_neural(102;0.107)|Medulloblastoma(177;0.146)		all cancers(43;1.33e-28)|Epithelial(43;5.3e-25)|OV - Ovarian serous cystadenocarcinoma(60;4.88e-11)|Colorectal(24;3.59e-06)|STAD - Stomach adenocarcinoma(60;2.72e-05)|GBM - Glioblastoma multiforme(59;2.83e-05)|BRCA - Breast invasive adenocarcinoma(30;7.66e-05)|COAD - Colon adenocarcinoma(29;0.000538)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.0419)	Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TATCTTCGAGGATAGCTTTTT	0.373													42	172					0	0	0.014410	0	0
SLC6A19	340024	broad.mit.edu	37	5	1221332	1221332	+	Silent	SNP	C	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:1221332C>G	uc003jbw.3	+	11	1661	c.1605C>G	c.(1603-1605)CGC>CGG	p.R535R		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	535	Helical; Name=11; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCACGTGGCGCGTGGTCAGCC	0.547													11	25					0	0	0.010729	0	0
DNAH5	1767	broad.mit.edu	37	5	13721277	13721277	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:13721277C>T	uc003jfd.2	-	71	12153	c.12111G>A	c.(12109-12111)GAG>GAA	p.E4037E	DNAH5_uc003jfc.2_Silent_p.E205E	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4037	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATCAGATTCCTCCCACGTCT	0.478									Kartagener_syndrome				26	69					0	0	0.007291	0	0
DNAH5	1767	broad.mit.edu	37	5	13871743	13871743	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:13871743G>A	uc003jfd.2	-	23	3570	c.3528C>T	c.(3526-3528)TTC>TTT	p.F1176F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1176	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTAGGTTTTGGAAATAGAGAA	0.383									Kartagener_syndrome				20	46					0	0	0.003330	0	0
SUB1	10923	broad.mit.edu	37	5	32601183	32601183	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:32601183A>G	uc003jhs.2	+	5	505	c.377A>G	c.(376-378)AAA>AGA	p.K126R	SUB1_uc003jht.2_RNA	NM_006713	NP_006704	P53999	TCP4_HUMAN	activated RNA polymerase II transcription	126					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleolus|transcription factor complex	protein binding|single-stranded DNA binding|transcription coactivator activity				0						GCAGTAAGAAAACTGTAAAAT	0.313													12	34					0	0	0.004007	0	0
IL7R	3575	broad.mit.edu	37	5	35875626	35875626	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:35875626C>T	uc003jjs.2	+	7	902	c.813C>T	c.(811-813)ATC>ATT	p.I271I	IL7R_uc011coo.1_Missense_Mutation_p.S240L|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	271	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TTAAGCCTATCGTATGGCCCA	0.398													11	35					0	0	0.013537	0	0
C6	729	broad.mit.edu	37	5	41199882	41199882	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:41199882G>A	uc003jmk.2	-	4	643	c.433C>T	c.(433-435)CGC>TGC	p.R145C	C6_uc003jml.1_Missense_Mutation_p.R145C	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	145	LDL-receptor class A.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CTGTCACAGCGAAATTTATTC	0.413													41	93					0	0	0.014410	0	0
DMGDH	29958	broad.mit.edu	37	5	78325734	78325734	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:78325734C>T	uc003kfs.2	-	11	1813	c.1807G>A	c.(1807-1809)GAT>AAT	p.D603N	DMGDH_uc011cte.1_Missense_Mutation_p.D453N|DMGDH_uc011ctf.1_Missense_Mutation_p.D402N|DMGDH_uc011ctg.1_Missense_Mutation_p.D223N	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	603					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		TACCTAAGATCATGAAGTTCT	0.373													12	10					0	0	0.001855	0	0
GPR98	84059	broad.mit.edu	37	5	90052378	90052378	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:90052378G>A	uc003kju.2	+	56	11784	c.11688G>A	c.(11686-11688)ATG>ATA	p.M3896I	GPR98_uc003kjt.2_Missense_Mutation_p.M1602I|GPR98_uc003kjv.2_Missense_Mutation_p.M1496I	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3896	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GGCCCGGAATGGAAATAGCTG	0.408													19	45					0	0	0.007413	0	0
ELL2	22936	broad.mit.edu	37	5	95236439	95236439	+	Silent	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:95236439T>C	uc003klr.3	-	7	1262	c.912A>G	c.(910-912)GAA>GAG	p.E304E		NM_012081	NP_036213	O00472	ELL2_HUMAN	elongation factor, RNA polymerase II, 2	304					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				central_nervous_system(1)	1		all_cancers(142;2.04e-06)|all_epithelial(76;3.1e-09)|all_lung(232;0.00309)|Lung NSC(167;0.00454)|Ovarian(225;0.0165)|Colorectal(57;0.0343)|Breast(839;0.198)		all cancers(79;2.16e-15)		ATACAGGAGATTCTGAACGGC	0.299													18	26					0	0	0.003954	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181052	140181052	+	Silent	SNP	A	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:140181052A>C	uc003lhf.2	+	1	270	c.270A>C	c.(268-270)ATA>ATC	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.I90I	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATAGACCGCGAGG	0.592													6	239					0	0	0.006214	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201561	140201561	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:140201561C>T	uc003lhl.2	+	1	201	c.201C>T	c.(199-201)TCC>TCT	p.S67S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.S67S|PCDHA5_uc003lhj.1_Silent_p.S67S	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	67	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding	p.Q49fs*50(1)		ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGTGGCGTCCAAGGGCCGCG	0.642													52	98					0	0	0.014410	0	0
PCDHA8	56140	broad.mit.edu	37	5	140223289	140223289	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:140223289C>T	uc003lhs.2	+	1	2383	c.2383C>T	c.(2383-2385)CAT>TAT	p.H795Y	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.H795Y	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	795	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAATGTTGATCATGGCCTCAA	0.408													12	26					0	0	0.001855	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475556	140475556	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:140475556C>T	uc003lil.2	+	1	1320	c.1182C>T	c.(1180-1182)TTC>TTT	p.F394F	PCDHB2_uc003lim.1_Silent_p.F55F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	394	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCCTTTTTTCTTGAAACCTT	0.493													14	32					0	0	0.008871	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595192	140595192	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:140595192C>T	uc003lja.1	+	1	1684	c.1497C>T	c.(1495-1497)CCC>CCT	p.P499P		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	499	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCACCTGCCCCTCACATCCC	0.672													52	101					0	0	0.014410	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140789353	140789353	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:140789353C>T	uc003lkj.1	+	1	1584	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Silent_p.F528F	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	528	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCGCGCCTTCGCGCTCACGC	0.692													3	3					0	0	0.004672	0	0
SLC36A3	285641	broad.mit.edu	37	5	150660743	150660743	+	Silent	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:150660743A>G	uc003ltw.2	-	9	1395	c.976T>C	c.(976-978)TTG>CTG	p.L326L	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Silent_p.L311L|SLC36A3_uc003ltx.2_Silent_p.L367L	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	326	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GACTGGTACAACCTGCAGACA	0.483													18	37					0	0	0.007413	0	0
HAVCR1	26762	broad.mit.edu	37	5	156456847	156456847	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:156456847G>A	uc010jij.1	-	9	1177	c.992C>T	c.(991-993)TCA>TTA	p.S331L	HAVCR1_uc011ddl.1_Missense_Mutation_p.H151Y|HAVCR1_uc003lwi.2_Missense_Mutation_p.S331L	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	326	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCTGCTAAATGAAACACTGTA	0.353													7	19					0	0	0.003080	0	0
SLIT3	6586	broad.mit.edu	37	5	168233545	168233545	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:168233545G>A	uc003mab.2	-	9	1261	c.841C>T	c.(841-843)CCT>TCT	p.P281S	SLIT3_uc010jjg.2_Missense_Mutation_p.P281S|SLIT3_uc010jji.2_Missense_Mutation_p.P281S|SLIT3_uc003mac.1_Missense_Mutation_p.P78S	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	281	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAGGGCGAAGGGCAGGAGATG	0.572													23	42					0	0	0.003330	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166588	180166588	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr5:180166588C>T	uc003mmf.1	-	1	471	c.471G>A	c.(469-471)CTG>CTA	p.L157L		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGTCTGGATCAGAGAGTTCA	0.557													9	8					0	0	0.004482	0	0
ATXN1	6310	broad.mit.edu	37	6	16328366	16328366	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:16328366C>T	uc003nbt.2	-	8	1147	c.176G>A	c.(175-177)AGG>AAG	p.R59K	ATXN1_uc010jpi.2_Missense_Mutation_p.R59K|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	59					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CGGCCCATGCCTCCCGCCCCC	0.667													90	172					0	0	0.014410	0	0
DCDC2	51473	broad.mit.edu	37	6	24178684	24178684	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:24178684G>A	uc003ndx.2	-	9	1502	c.1200C>T	c.(1198-1200)CGC>CGT	p.R400R	DCDC2_uc003ndy.2_Silent_p.R400R|DCDC2_uc003ndw.2_Silent_p.R151R	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	doublecortin domain containing 2	400					cellular defense response|intracellular signal transduction|neuron migration					ovary(1)	1		Ovarian(999;0.101)				CACGAGCAGGGCGTGCCTGCT	0.522													47	77					0	0	0.014410	0	0
GPLD1	2822	broad.mit.edu	37	6	24467156	24467156	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:24467156A>C	uc003ned.1	-	9	776	c.665T>G	c.(664-666)ATG>AGG	p.M222R	GPLD1_uc010jpr.1_Missense_Mutation_p.M59R|GPLD1_uc010jps.1_Missense_Mutation_p.M222R	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	222						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						AACAGCTAGCATCTCACCATA	0.338													10	60					0	0	0.001855	0	0
DHX16	8449	broad.mit.edu	37	6	30627938	30627938	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:30627938G>A	uc003nqz.2	-	10	1838	c.1626C>T	c.(1624-1626)TTC>TTT	p.F542F	DHX16_uc003nqy.2_Silent_p.F61F|DHX16_uc011dmo.1_Silent_p.F482F	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	542	Helicase ATP-binding.				mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						GCTCAGGTCGGAAGCGAGCAA	0.542													22	77					0	0	0.012319	0	0
HLA-DQA1	3117	broad.mit.edu	37	6	32609924	32609924	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:32609924T>A	uc003obr.2	+	3	560	c.507T>A	c.(505-507)CAT>CAA	p.H169Q	HLA-DQA1_uc003obs.2_RNA|HLA-DQA1_uc003obt.1_Missense_Mutation_p.H169Q|HLA-DQA1_uc003obu.2_5'Flank	NM_002122	NP_002113	P01909	DQA1_HUMAN	major histocompatibility complex, class II, DQ	168	Ig-like C1-type.|Alpha-2.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						AGAGTGATCATTCCTTCTTCA	0.498													36	45					0	0	0.009718	0	0
COL11A2	1302	broad.mit.edu	37	6	33137226	33137226	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:33137226C>T	uc003ocx.1	-	51	3960	c.3732G>A	c.(3730-3732)CAG>CAA	p.Q1244Q	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Silent_p.Q1158Q|COL11A2_uc003ocz.1_Silent_p.Q1137Q	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1244	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GCTCTCCTGGCTGCCCCGACT	0.627													12	21					0	0	0.001855	0	0
BTBD9	114781	broad.mit.edu	37	6	38545387	38545387	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:38545387G>A	uc003ooa.3	-	7	1719	c.1143C>T	c.(1141-1143)GCC>GCT	p.A381A	BTBD9_uc003ony.3_Silent_p.A313A|BTBD9_uc010jwv.2_Silent_p.A313A|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Silent_p.A381A	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	381					cell adhesion						0						TGCAGACACGGGCTGGAAAAT	0.353													28	92					0	0	0.003271	0	0
DNAH8	1769	broad.mit.edu	37	6	38899763	38899763	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:38899763G>A	uc003ooe.1	+	74	11400	c.10800G>A	c.(10798-10800)GAG>GAA	p.E3600E	DNAH8_uc003oog.1_Silent_p.E49E|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTCTAACAGAGAAACAGGTAA	0.318													10	57					0	0	0.010729	0	0
LRFN2	57497	broad.mit.edu	37	6	40400324	40400324	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:40400324G>A	uc003oph.1	-	2	994	c.529C>T	c.(529-531)CAG>TAG	p.Q177*		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	177	Extracellular (Potential).|LRR 6.					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGGCTCAGCTGGTGGAGGTTG	0.592													42	55					0	0	0.014410	0	0
TRERF1	55809	broad.mit.edu	37	6	42233525	42233525	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:42233525G>A	uc003osd.2	-	6	2011	c.1448C>T	c.(1447-1449)CCT>CTT	p.P483L	TRERF1_uc011duq.1_Missense_Mutation_p.P483L|TRERF1_uc003osb.2_Missense_Mutation_p.P322L|TRERF1_uc003osc.2_Missense_Mutation_p.P322L|TRERF1_uc003ose.2_Missense_Mutation_p.P483L	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	483	Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TCTCCCATCAGGTAGGTGCAT	0.502													8	37					0	0	0.010729	0	0
ABCC10	89845	broad.mit.edu	37	6	43402557	43402557	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:43402557C>T	uc003ouy.1	+	4	1794	c.1579C>T	c.(1579-1581)CTC>TTC	p.L527F	ABCC10_uc003ouz.1_Missense_Mutation_p.L484F|ABCC10_uc010jyo.1_5'Flank	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	527	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CACCTATGTCCTCATGGGGCA	0.572													40	49					0	0	0.014410	0	0
RSPH9	221421	broad.mit.edu	37	6	43618130	43618130	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:43618130G>A	uc003ovw.1	+	2	272	c.246G>A	c.(244-246)TGG>TGA	p.W82*	RSPH9_uc003ovx.1_Nonsense_Mutation_p.W82*	NM_152732	NP_689945	Q9H1X1	RSPH9_HUMAN	radial spoke head 9 homolog	82					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton				upper_aerodigestive_tract(1)|skin(1)	2						GCACAGAGTGGAGCCTCTTGC	0.537									Kartagener_syndrome				8	34					0	0	0.003080	0	0
ENPP4	22875	broad.mit.edu	37	6	46108078	46108078	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:46108078C>T	uc003oxy.2	+	2	1017	c.758C>T	c.(757-759)TCC>TTC	p.S253F		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	253	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						AACCTGGATTCCTGCATCGAT	0.388													28	103					0	0	0.010818	0	0
GPR110	266977	broad.mit.edu	37	6	46977696	46977696	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:46977696G>A	uc003oyt.2	-	11	1674	c.1475C>T	c.(1474-1476)CCC>CTC	p.P492L	GPR110_uc011dwl.1_Missense_Mutation_p.P180L	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	492	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						TTTGGAAACGGGTAGAATGTT	0.418													41	60					0	0	0.014410	0	0
GPR110	266977	broad.mit.edu	37	6	46977814	46977814	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:46977814G>A	uc003oyt.2	-	11	1556	c.1357C>T	c.(1357-1359)CCC>TCC	p.P453S	GPR110_uc011dwl.1_Missense_Mutation_p.P141S	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	453	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						GTATTTTGGGGACACATTTTA	0.423													51	63					0	0	0.014410	0	0
HCRTR2	3062	broad.mit.edu	37	6	55147101	55147101	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:55147101C>T	uc003pcl.2	+	7	1499	c.1184C>T	c.(1183-1185)ACC>ATC	p.T395I	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	395	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GATCGGCTCACCAGGGGACGA	0.463													12	65					0	0	0.002450	0	0
COL21A1	81578	broad.mit.edu	37	6	55989071	55989071	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:55989071C>T	uc003pcs.2	-	15	1902	c.1670G>A	c.(1669-1671)GGG>GAG	p.G557E	COL21A1_uc010jzz.2_5'UTR|COL21A1_uc011dxg.1_5'UTR|COL21A1_uc011dxh.1_5'UTR	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	557	Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GCCAGCATTCCCCTTTTCACC	0.353													4	12					0	0	0.000602	0	0
FILIP1	27145	broad.mit.edu	37	6	76022272	76022272	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:76022272G>A	uc003pia.2	-	5	3649	c.3276C>T	c.(3274-3276)GTC>GTT	p.V1092V	FILIP1_uc003phy.1_Silent_p.V1092V|FILIP1_uc003phz.2_Silent_p.V993V|FILIP1_uc010kbe.2_Silent_p.V1095V|FILIP1_uc003pib.1_Silent_p.V844V	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	1092										skin(3)|ovary(1)	4						TTACTGGTCGGACAGTAATAA	0.502													50	116					0	0	0.014410	0	0
TTK	7272	broad.mit.edu	37	6	80724181	80724181	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:80724181C>T	uc003pjc.2	+	10	1060	c.986C>T	c.(985-987)TCT>TTT	p.S329F	TTK_uc003pjb.3_Missense_Mutation_p.S329F	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	329					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		TTCATGTAGTCTGTTCAAAAT	0.308													21	58					0	0	0.014323	0	0
ME1	4199	broad.mit.edu	37	6	83926249	83926249	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:83926249T>A	uc003pjy.2	-	13	1622	c.1516A>T	c.(1516-1518)ATT>TTT	p.I506F	ME1_uc011dzb.1_Missense_Mutation_p.I431F|ME1_uc011dzc.1_Missense_Mutation_p.I340F	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	506					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	ACATCTCTAATGGTATTCAAA	0.318													24	106					0	0	0.008361	0	0
AIM1	202	broad.mit.edu	37	6	106975229	106975229	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:106975229G>A	uc003prh.2	+	5	3725	c.3238G>A	c.(3238-3240)GAA>AAA	p.E1080K		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1080	Beta/gamma crystallin 'Greek key' 2.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CATCCCCTTAGAAGAAGGAGA	0.418													37	138					0	0	0.009718	0	0
FIG4	9896	broad.mit.edu	37	6	110113806	110113806	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:110113806G>A	uc003ptt.2	+	21	2613	c.2398G>A	c.(2398-2400)GAG>AAG	p.E800K	FIG4_uc011eau.1_Missense_Mutation_p.E523K	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	800					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		ACCCATGAAGGAGCTATATGG	0.323													27	67					0	0	0.009535	0	0
COL10A1	1300	broad.mit.edu	37	6	116442900	116442900	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:116442900C>T	uc003pwm.2	-	3	475	c.379G>A	c.(379-381)GGA>AGA	p.G127R	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	127	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		CCAACATCTCCTTTTGGTCCA	0.602													7	20					0	0	0.003080	0	0
ROS1	6098	broad.mit.edu	37	6	117710685	117710685	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:117710685G>A	uc003pxp.1	-	12	1786	c.1587C>T	c.(1585-1587)ATC>ATT	p.I529I	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	529	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CACATCCCACGATGAATTCAT	0.458			T	GOPC|ROS1	glioblastoma|NSCLC								15	46					0	0	0.003163	0	0
NCOA7	135112	broad.mit.edu	37	6	126136462	126136463	+	Translation_Start_Site	DNP	GG	AT	AT			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:126136462_126136463GG>AT	uc010kes.2	+	4	411_412	c.-38_-37GG>AT	c.(-40--35)GAGGGA>GAATGA		NCOA7_uc003qae.3_Translation_Start_Site|NCOA7_uc003qah.2_Translation_Start_Site|NCOA7_uc003qai.2_Translation_Start_Site|NCOA7_uc010ket.2_Translation_Start_Site|NCOA7_uc003qaf.2_Translation_Start_Site|NCOA7_uc003qag.2_Translation_Start_Site|NCOA7_uc003qaj.2_Translation_Start_Site	NM_181782	NP_861447	Q8NI08	NCOA7_HUMAN	nuclear receptor coactivator 7 isoform 1						cell wall macromolecule catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (4;0.0803)|GBM - Glioblastoma multiforme(226;0.0193)|all cancers(137;0.237)		ATTAAAAAGAGGGACTTTTTCA	0.337													12	37					0	0	0.004672	0	0
PTPRK	5796	broad.mit.edu	37	6	128505661	128505661	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:128505661C>T	uc003qbk.2	-	7	1445	c.1078G>A	c.(1078-1080)GAG>AAG	p.E360K	PTPRK_uc003qbj.2_Missense_Mutation_p.E360K|PTPRK_uc010kfc.2_Missense_Mutation_p.E360K|PTPRK_uc011ebu.1_Missense_Mutation_p.E360K|PTPRK_uc003qbl.1_Missense_Mutation_p.E230K|PTPRK_uc011ebv.1_Missense_Mutation_p.E360K	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	360	Fibronectin type-III 1.|Extracellular (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		ACTCGGATCTCATATTCGGTA	0.458													41	127					0	0	0.013114	0	0
TBPL1	9519	broad.mit.edu	37	6	134303966	134303966	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:134303966C>T	uc010kgg.2	+	4	790	c.230C>T	c.(229-231)GCT>GTT	p.A77V	TBPL1_uc003qel.2_Missense_Mutation_p.A77V	NM_004865	NP_004856	P62380	TBPL1_HUMAN	TBP-like 1	77					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	cytoplasm	DNA binding|protein binding|transcription coactivator activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00591)|OV - Ovarian serous cystadenocarcinoma(155;0.00848)		GAAGAAGAAGCTAAATTTGGT	0.328													7	43					0	0	0.003080	0	0
CCDC28A	25901	broad.mit.edu	37	6	139094904	139094904	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:139094904C>T	uc003qie.2	+	1	248	c.93C>T	c.(91-93)TTC>TTT	p.F31F	uc003qid.1_5'Flank	NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	31											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		TACGTCACTTCCGTAAACAAA	0.642													56	145					0	0	0.014410	0	0
SYNE1	23345	broad.mit.edu	37	6	152469504	152469504	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:152469504C>T	uc010kiw.2	-	137	25254	c.24652G>A	c.(24652-24654)GAT>AAT	p.D8218N	SYNE1_uc010kiv.2_Missense_Mutation_p.D2742N|SYNE1_uc003qos.3_Missense_Mutation_p.D2742N|SYNE1_uc003qot.3_Missense_Mutation_p.D8147N|SYNE1_uc003qou.3_Missense_Mutation_p.D8218N|SYNE1_uc003qop.3_Missense_Mutation_p.D380N|SYNE1_uc011eez.1_Missense_Mutation_p.D420N|SYNE1_uc003qoq.3_Missense_Mutation_p.D420N|SYNE1_uc003qor.3_Missense_Mutation_p.D1118N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8218	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCGTGCTCATCGTCTGGGAGC	0.562										HNSCC(10;0.0054)			7	16					0	0	0.001984	0	0
SLC22A3	6581	broad.mit.edu	37	6	160828166	160828166	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:160828166G>A	uc003qti.2	+	3	654	c.627G>A	c.(625-627)GTG>GTA	p.V209V	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	209						integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		CTGTGTTTGTGATCTTCCGCT	0.468													43	121					0	0	0.014410	0	0
TCP10	6953	broad.mit.edu	37	6	167786710	167786710	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:167786710C>T	uc003qvv.1	-	8	1140	c.928G>A	c.(928-930)GAA>AAA	p.E310K	TCP10_uc003qvu.2_Intron	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	337						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		CCTGGAAATTCACTCGGGAAA	0.552													8	52					0	0	0.013537	0	0
MLLT4	4301	broad.mit.edu	37	6	168352766	168352766	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:168352766C>T	uc003qwd.2	+	29	4850	c.4708C>T	c.(4708-4710)CAG>TAG	p.Q1570*	MLLT4_uc003qwb.1_Nonsense_Mutation_p.Q1555*|MLLT4_uc003qwc.1_Nonsense_Mutation_p.Q1571*|MLLT4_uc003qwg.1_Nonsense_Mutation_p.Q880*	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1571	Potential.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GAAGAGACTCCaggagtcgaa	0.453			T	MLL	AL								7	16					0	0	0.001984	0	0
FAM120B	84498	broad.mit.edu	37	6	170627539	170627539	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:170627539C>T	uc003qxp.2	+	2	1169	c.1061C>T	c.(1060-1062)CCC>CTC	p.P354L	FAM120B_uc003qxo.1_Missense_Mutation_p.P354L|FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	354					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		CAAGAAGTTCCCATGTGTACA	0.483													60	184					0	0	0.014410	0	0
SDK1	221935	broad.mit.edu	37	7	4051763	4051763	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:4051763G>A	uc003smx.2	+	16	2455	c.2316G>A	c.(2314-2316)CCG>CCA	p.P772P	SDK1_uc010kso.2_Silent_p.P48P	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	772	Fibronectin type-III 2.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GTGCTCCCCCGAAAAATATAG	0.522													154	146					0	0	0.014410	0	0
SDK1	221935	broad.mit.edu	37	7	4056981	4056981	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:4056981G>A	uc003smx.2	+	17	2738	c.2599G>A	c.(2599-2601)GGA>AGA	p.G867R	SDK1_uc010kso.2_Missense_Mutation_p.G143R	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	867					cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CACCTTGCAGGGAGGTAAGCT	0.537													22	18					0	0	0.012319	0	0
COL28A1	340267	broad.mit.edu	37	7	7483251	7483251	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:7483251C>T	uc003src.1	-	20	1732	c.1615G>A	c.(1615-1617)GAA>AAA	p.E539K	COL28A1_uc011jxe.1_Missense_Mutation_p.E222K|COL28A1_uc003srd.2_Missense_Mutation_p.E94K	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	539	Collagen-like 4.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		GGTGGTCCTTCTGGGCCTCTT	0.537													53	56					0	0	0.014410	0	0
DNAH11	8701	broad.mit.edu	37	7	21603884	21603884	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:21603884C>T	uc003svc.2	+	6	1094	c.1063C>T	c.(1063-1065)CCA>TCA	p.P355S		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	355	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GACGGAATTCCCACAGACACG	0.448									Kartagener_syndrome				40	37					0	0	0.009718	0	0
DNAH11	8701	broad.mit.edu	37	7	21805148	21805148	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:21805148C>T	uc003svc.2	+	56	9095	c.9064C>T	c.(9064-9066)CCG>TCG	p.P3022S		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3022	AAA 4 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TCATGCGTGGCCGCAGGAGGC	0.483									Kartagener_syndrome				48	49					0	0	0.014410	0	0
VPS41	27072	broad.mit.edu	37	7	38768159	38768159	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:38768159G>A	uc003tgy.2	-	27	2413	c.2387C>T	c.(2386-2388)TCC>TTC	p.S796F	VPS41_uc003tgz.2_Missense_Mutation_p.S771F|VPS41_uc010kxn.2_Missense_Mutation_p.S707F|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	796	RING-type; atypical.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						AAGAATAGGGGAAAGGCACGA	0.408													23	178					0	0	0.005443	0	0
NPC1L1	29881	broad.mit.edu	37	7	44578466	44578466	+	Missense_Mutation	SNP	C	T	T	rs1468384		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:44578466C>T	uc003tlb.2	-	2	1586	c.1530G>A	c.(1528-1530)ATG>ATA	p.M510I	NPC1L1_uc003tlc.2_Missense_Mutation_p.M510I|NPC1L1_uc011kbw.1_Missense_Mutation_p.M510I|NPC1L1_uc003tld.2_Missense_Mutation_p.M510I	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	510	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AGGTCTGCCCCATCAGTGTCT	0.507													17	147					0	0	0.006122	0	0
CDC14C	168448	broad.mit.edu	37	7	48965380	48965380	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:48965380C>T	uc010kyv.1	+	1	1224	c.1112C>T	c.(1111-1113)TCC>TTC	p.S371F		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						GATGACATTTCCATAAATGGG	0.483													6	62					0	0	0.003163	0	0
VSTM2A	222008	broad.mit.edu	37	7	54610432	54610432	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:54610432G>A	uc010kzf.2	+	1	414	c.9G>A	c.(7-9)GGG>GGA	p.G3G	VSTM2A_uc010kze.2_Silent_p.G3G|VSTM2A_uc003tqc.3_Silent_p.G3G	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	3						extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			GAATGATGGGGATCTTTTTGG	0.443													62	55					0	0	0.014410	0	0
LOC442308	442308	broad.mit.edu	37	7	55713752	55713752	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:55713752C>T	uc010kzj.2	+	1		c.441C>T				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						GCTCTGGAATCGGCACTCTCC	0.517													11	20					0	0	0.010729	0	0
WBSCR17	64409	broad.mit.edu	37	7	71177106	71177106	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:71177106G>A	uc003tvy.2	+	11	1772	c.1772G>A	c.(1771-1773)TGG>TAG	p.W591*	WBSCR17_uc003tvz.2_Nonsense_Mutation_p.W290*	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	591	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GGTCAGAGGTGGACCATTAAG	0.637													19	46					0	0	0.012319	0	0
MLXIPL	51085	broad.mit.edu	37	7	73009975	73009975	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:73009975A>C	uc003tyn.1	-	15	2350	c.2302T>G	c.(2302-2304)TTC>GTC	p.F768V	MLXIPL_uc003tyj.1_Missense_Mutation_p.F147V|MLXIPL_uc003tyk.1_Missense_Mutation_p.F747V|MLXIPL_uc003tyl.1_Missense_Mutation_p.F766V|MLXIPL_uc003tym.1_Missense_Mutation_p.F749V|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.F674V	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	768					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				ACCACCCAGAACTTCCAGTTG	0.622													18	43					0	0	0.004656	0	0
HSPB1	3315	broad.mit.edu	37	7	75933408	75933408	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:75933408T>A	uc003uew.2	+	3	691	c.536T>A	c.(535-537)ATC>AAC	p.I179N	HSPB1_uc010ldj.1_RNA|uc003uey.1_5'Flank	NM_001540	NP_001531	P04792	HSPB1_HUMAN	heat shock protein beta-1	179	Interaction with TGFB1I1 (By similarity).				anti-apoptosis|cell death|cellular component movement|mRNA metabolic process|positive regulation of interleukin-1 beta production|positive regulation of tumor necrosis factor biosynthetic process|regulation of I-kappaB kinase/NF-kappaB cascade|regulation of translational initiation|response to heat|response to unfolded protein|response to virus	cell surface|cytosol|nucleus|proteasome complex|spindle	identical protein binding|protein kinase C delta binding|protein kinase C inhibitor activity|ubiquitin binding				0						TCCAACGAGATCACCATCCCA	0.637													7	22					0	0	0.013537	0	0
PCLO	27445	broad.mit.edu	37	7	82585618	82585618	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:82585618C>T	uc003uhx.2	-	5	4940	c.4651G>A	c.(4651-4653)GAA>AAA	p.E1551K	PCLO_uc003uhv.2_Missense_Mutation_p.E1551K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1482					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCCTCCTCTTCCCCTGATCCT	0.413													16	47					0	0	0.006122	0	0
SEMA3D	223117	broad.mit.edu	37	7	84694755	84694755	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:84694755G>A	uc003uic.2	-	6	743	c.703C>T	c.(703-705)CAC>TAC	p.H235Y	SEMA3D_uc010led.2_Missense_Mutation_p.H235Y|SEMA3D_uc010lee.1_Missense_Mutation_p.H235Y	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	235	Sema.				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						AGCCAGTAGTGCTCTGAAATG	0.378													11	38					0	0	0.010729	0	0
SAMD9	54809	broad.mit.edu	37	7	92732223	92732223	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:92732223C>T	uc003umf.2	-	3	3444	c.3188G>A	c.(3187-3189)GGA>GAA	p.G1063E	SAMD9_uc003umg.2_Missense_Mutation_p.G1063E	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1063						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TGCTTCATTTCCTTCATCTTT	0.393													10	51					0	0	0.010729	0	0
CCDC132	55610	broad.mit.edu	37	7	92987678	92987678	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:92987678C>T	uc003umo.2	+	28	2953	c.2825C>T	c.(2824-2826)TCC>TTC	p.S942F	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.S912F|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.S662F	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	942											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			TGCCTGGGATCCCATATCAAT	0.378													31	113					0	0	0.010818	0	0
TRRAP	8295	broad.mit.edu	37	7	98509802	98509802	+	Missense_Mutation	SNP	C	T	T	rs147405090		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:98509802C>T	uc003upp.2	+	18	2374	c.2165C>T	c.(2164-2166)TCC>TTC	p.S722F	TRRAP_uc011kis.1_Missense_Mutation_p.S722F|TRRAP_uc003upr.2_Missense_Mutation_p.S414F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	722					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity	p.S722F(10)		ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGCTCTGTCTCCCTCTTTGCA	0.413													92	110					0	0	0.014410	0	0
PIK3CG	5294	broad.mit.edu	37	7	106523501	106523501	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:106523501G>A	uc003vdv.3	+	8	2738	c.2653G>A	c.(2653-2655)GCC>ACC	p.A885T	PIK3CG_uc003vdu.2_Missense_Mutation_p.A885T|PIK3CG_uc003vdw.2_Missense_Mutation_p.A885T	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	885	PI3K/PI4K.				G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TGTGAAAGACGCCACGACAAT	0.478													9	417					0	0	0.008291	0	0
IFRD1	3475	broad.mit.edu	37	7	112112285	112112285	+	Silent	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:112112285T>C	uc003vgh.2	+	11	1496	c.1053T>C	c.(1051-1053)TTT>TTC	p.F351F	IFRD1_uc011kmn.1_Silent_p.F301F|IFRD1_uc003vgj.2_Silent_p.F351F|IFRD1_uc011kmo.1_RNA|IFRD1_uc011kmp.1_Silent_p.F301F|IFRD1_uc003vgk.2_Silent_p.F68F	NM_001007245	NP_001007246	O00458	IFRD1_HUMAN	interferon-related developmental regulator 1	351					multicellular organismal development|myoblast cell fate determination		binding			kidney(1)|central_nervous_system(1)	2						AACGGGATTTTCCAACAGAAA	0.383													55	170					0	0	0.014410	0	0
TES	26136	broad.mit.edu	37	7	115889119	115889119	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:115889119C>T	uc003vho.2	+	3	340	c.159C>T	c.(157-159)GTC>GTT	p.V53V	TES_uc011kmx.1_Silent_p.V53V|TES_uc011kmy.1_Intron|TES_uc010lka.1_Silent_p.V44V|TES_uc003vhp.2_Silent_p.V44V	NM_015641	NP_056456	Q9UGI8	TES_HUMAN	testin isoform 1	53					negative regulation of cell proliferation	cytoplasm|focal adhesion|nucleus|protein complex	zinc ion binding				0	Lung NSC(10;0.0137)|all_lung(10;0.0148)	Breast(660;0.0602)	STAD - Stomach adenocarcinoma(10;0.00878)			AGCATGATGTCCTCTTGAGCA	0.338													27	105					0	0	0.004656	0	0
MET	4233	broad.mit.edu	37	7	116339804	116339804	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:116339804G>A	uc003vij.2	+	2	853	c.666G>A	c.(664-666)ACG>ACA	p.T222T	MET_uc010lkh.2_Silent_p.T222T|MET_uc011knc.1_Silent_p.T222T|MET_uc011knd.1_Silent_p.T222T|MET_uc011kne.1_Silent_p.T222T|MET_uc011knf.1_Silent_p.T222T|MET_uc011kng.1_Silent_p.T222T|MET_uc011knh.1_Silent_p.T222T|MET_uc011kni.1_Silent_p.T222T|MET_uc003vii.1_Silent_p.T241T|MET_uc010lkg.2_Silent_p.T222T|MET_uc011kmz.1_Silent_p.T222T|MET_uc011kna.1_Silent_p.T222T|MET_uc011knb.1_Silent_p.T222T	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	222	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TAAAGGAAACGAAAGATGGTT	0.388			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				257	149					0	0	0.014410	0	0
MET	4233	broad.mit.edu	37	7	116403266	116403266	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:116403266C>T	uc003vij.2	+	11	2714	c.2527C>T	c.(2527-2529)CCT>TCT	p.P843S	MET_uc010lkh.2_Missense_Mutation_p.P861S|MET_uc011knh.1_3'UTR|MET_uc011kni.1_Missense_Mutation_p.P843S|MET_uc011knj.1_Missense_Mutation_p.P413S	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	843	Extracellular (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TGTGTTTAAGCCTTTTGAAAA	0.358			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				54	44					0	0	0.014410	0	0
ASZ1	136991	broad.mit.edu	37	7	117023050	117023050	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:117023050G>A	uc003vjb.2	-	7	865	c.802C>T	c.(802-804)CAC>TAC	p.H268Y	ASZ1_uc011kno.1_Missense_Mutation_p.H268Y|ASZ1_uc011knp.1_Missense_Mutation_p.H60Y	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	268					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			CTAAAAATGTGATCTTTTTCT	0.254													18	98					0	0	0.014323	0	0
C7orf58	79974	broad.mit.edu	37	7	120686958	120686958	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:120686958G>A	uc003vjq.3	+	4	898	c.451G>A	c.(451-453)GAT>AAT	p.D151N	C7orf58_uc003vjr.1_Missense_Mutation_p.D151N|C7orf58_uc003vjs.3_Missense_Mutation_p.D151N	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	151						endoplasmic reticulum		p.D151G(1)		ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GGGCTCTTGGGATCTGCTCAT	0.333													20	189					0	0	0.002780	0	0
C7orf58	79974	broad.mit.edu	37	7	120876767	120876767	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:120876767G>A	uc003vjq.3	+	17	2503	c.2056_splice	c.e17-1	p.D686_splice	C7orf58_uc003vjs.3_Splice_Site_p.D686_splice|C7orf58_uc003vjt.3_Splice_Site_p.D466_splice	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1							endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TTTTAATGCAGGATTGTGGTT	0.313													20	146					0	0	0.003954	0	0
ASB15	142685	broad.mit.edu	37	7	123270153	123270153	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:123270153C>A	uc003vku.1	+	11	1866	c.1574C>A	c.(1573-1575)CCA>CAA	p.P525Q	ASB15_uc003vkw.1_Missense_Mutation_p.P525Q	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	525	SOCS box.				intracellular signal transduction					skin(2)|lung(1)	3						AGAGAATGGCCAGAAATCCGC	0.358													78	50					9.55688e-25	9.81554e-25	0.014410	1	0
LRRC4	64101	broad.mit.edu	37	7	127670333	127670333	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:127670333C>T	uc003vmk.2	-	2	498	c.361G>A	c.(361-363)GGC>AGC	p.G121S	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	121	LRR 2.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		CTGGCCAGGCCGTTGAAGGCC	0.622													15	94					0	0	0.004990	0	0
FLNC	2318	broad.mit.edu	37	7	128491542	128491542	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:128491542A>C	uc003vnz.3	+	35	5911	c.5702A>C	c.(5701-5703)AAG>ACG	p.K1901T	FLNC_uc003voa.3_Missense_Mutation_p.K1868T	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1901	Filamin 17.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGCCCATCCAAGGCAGAGATC	0.612													17	162					0	0	0.006122	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				112	80					0	0	0.004672	0	0
TAS2R3	50831	broad.mit.edu	37	7	141464237	141464237	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:141464237C>T	uc003vwp.1	+	1	341	c.279C>T	c.(277-279)AAC>AAT	p.N93N		NM_016943	NP_058639	Q9NYW6	TA2R3_HUMAN	taste receptor T2R3	93	Extracellular (Potential).				sensory perception of taste		taste receptor activity			central_nervous_system(1)	1	Melanoma(164;0.0171)					CATTTACAAACCATCTGAGCA	0.408													77	555					0	0	0.014410	0	0
TAS2R4	50832	broad.mit.edu	37	7	141478951	141478951	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:141478951G>T	uc003vwq.1	+	1	663	c.663G>T	c.(661-663)CAG>CAT	p.Q221H		NM_016944	NP_058640	Q9NYW5	TA2R4_HUMAN	taste receptor T2R4	221	Cytoplasmic (Potential).				sensory perception of taste	cilium membrane	taste receptor activity				0	Melanoma(164;0.0171)			BRCA - Breast invasive adenocarcinoma(188;0.196)		GGAATCCCCAGACGGAAGCTC	0.433													16	138					1.62849e-17	1.66309e-17	0.004007	1	0
PRSS37	136242	broad.mit.edu	37	7	141536973	141536973	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:141536973C>T	uc003vws.1	-	4	878	c.506G>A	c.(505-507)GGA>GAA	p.G169E	PRSS37_uc011krk.1_Missense_Mutation_p.G156E|PRSS37_uc011krl.1_Missense_Mutation_p.G168E|PRSS37_uc003vwt.1_Missense_Mutation_p.G156E	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	169	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						GTGGCTTTTTCCTTGTTCTGT	0.433													20	125					0	0	0.010504	0	0
CLCN1	1180	broad.mit.edu	37	7	143027865	143027865	+	Missense_Mutation	SNP	G	A	A	rs150885084		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:143027865G>A	uc003wcr.1	+	8	941	c.854G>A	c.(853-855)GGA>GAA	p.G285E	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Missense_Mutation_p.E81K	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	285			G -> E (in MCR).		muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GCCCCTGCAGGAGTGCTATTT	0.537													26	100					0	0	0.006320	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144077105	144077105	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:144077105C>T	uc003wel.2	+	15	4868	c.4750C>T	c.(4750-4752)CGA>TGA	p.R1584*	ARHGEF5_uc003wem.2_Nonsense_Mutation_p.R385*	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	1584					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					GGAAGCTCATCGAGTCAAGAC	0.547													24	172					0	0	0.003954	0	0
SSPO	23145	broad.mit.edu	37	7	149492425	149492425	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr7:149492425A>G	uc010lpk.2	+	43	6314	c.6314A>G	c.(6313-6315)CAG>CGG	p.Q2105R		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2105	F5/8 type C.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCCAGCCCTCAGGGATGGCAC	0.662													24	14					0	0	0.014323	0	0
MTMR9	66036	broad.mit.edu	37	8	11162451	11162452	+	Missense_Mutation	DNP	TC	GT	GT	rs144999294		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:11162451_11162452TC>GT	uc003wtm.2	+	4	917_918	c.519_520TC>GT	c.(517-522)CTTCGG>CTGTGG	p.R174W	MTMR9_uc010lrx.2_Missense_Mutation_p.R67W|MTMR9_uc011kxa.1_Missense_Mutation_p.R89W	NM_015458	NP_056273	Q96QG7	MTMR9_HUMAN	myotubularin related protein 9	174	Myotubularin phosphatase.					cytoplasm	phosphatase activity|protein binding				0			STAD - Stomach adenocarcinoma(15;0.215)	COAD - Colon adenocarcinoma(149;0.0678)		ATGAAGCTCTTCGGAAGGTAGC	0.455													34	132					0	0	0.004672	0	0
FDFT1	2222	broad.mit.edu	37	8	11683691	11683691	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:11683691C>T	uc003wui.2	+	5	821	c.669C>T	c.(667-669)GAC>GAT	p.D223D	FDFT1_uc003wuh.2_Silent_p.D159D|FDFT1_uc010lsa.1_Silent_p.D138D|FDFT1_uc011kxe.1_Silent_p.D159D|FDFT1_uc011kxf.1_Silent_p.D180D|FDFT1_uc011kxg.1_Silent_p.D56D|FDFT1_uc003wuj.2_Silent_p.D216D|FDFT1_uc010lsb.2_Silent_p.D159D|FDFT1_uc011kxh.1_Silent_p.D159D|FDFT1_uc011kxi.1_RNA|FDFT1_uc011kxj.1_Silent_p.D159D|FDFT1_uc003wuk.2_Silent_p.D282D|FDFT1_uc011kxk.1_Silent_p.D138D	NM_004462	NP_004453	P37268	FDFT_HUMAN	squalene synthase	223					cholesterol biosynthetic process|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	farnesyl-diphosphate farnesyltransferase activity|oxidoreductase activity|protein binding|squalene synthase activity				0	all_epithelial(15;0.234)		STAD - Stomach adenocarcinoma(15;0.00225)	COAD - Colon adenocarcinoma(149;0.18)		ATCTGGAAGACCAGCAAGGAG	0.423													34	103					0	0	0.009718	0	0
C8orf79	57604	broad.mit.edu	37	8	12878930	12878930	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:12878930C>T	uc010lsq.2	+	5	1234	c.742C>T	c.(742-744)CGT>TGT	p.R248C	C8orf79_uc011kxw.1_Intron|C8orf79_uc003wwj.3_Missense_Mutation_p.R161C|C8orf79_uc010lsr.2_Missense_Mutation_p.R122C	NM_020844	NP_065895	Q9P272	K1456_HUMAN	hypothetical protein LOC57604 isoform 1	248							methyltransferase activity				0						AAAATCGTTTCGTTCCTGGTT	0.418													20	39					0	0	0.010504	0	0
PDGFRL	5157	broad.mit.edu	37	8	17447050	17447050	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:17447050G>A	uc003wxr.2	+	2	190	c.129G>A	c.(127-129)AAG>AAA	p.K43K		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	43						extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		CTACCAACAAGAAGGTGAAGC	0.453													46	89					0	0	0.009718	0	0
ADAM28	10863	broad.mit.edu	37	8	24188673	24188673	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:24188673C>T	uc003xdy.2	+	12	1197	c.1114C>T	c.(1114-1116)CCC>TCC	p.P372S	ADAM28_uc003xdx.2_Missense_Mutation_p.P372S|ADAM28_uc011kzz.1_Missense_Mutation_p.P139S|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.P59S	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	372	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CTTCTATATACCCACAGACTT	0.393													34	102					0	0	0.014410	0	0
RNF122	79845	broad.mit.edu	37	8	33406291	33406291	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:33406291G>A	uc003xjo.1	-	6	850	c.448C>T	c.(448-450)CTA>TTA	p.L150L		NM_024787	NP_079063	Q9H9V4	RN122_HUMAN	ring finger protein 122	150						endoplasmic reticulum|Golgi apparatus|integral to membrane	zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0966)|Kidney(114;0.116)		TCATCCAATAGAATCCCAATG	0.547													44	132					0	0	0.014410	0	0
RP1	6101	broad.mit.edu	37	8	55541939	55541939	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:55541939G>A	uc003xsd.1	+	4	5645	c.5497G>A	c.(5497-5499)GAC>AAC	p.D1833N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1833					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTTTCATGAGGACTTGCTGGA	0.428													19	68					0	0	0.012319	0	0
CSPP1	79848	broad.mit.edu	37	8	68007843	68007843	+	Missense_Mutation	SNP	C	T	T	rs114953032	by1000genomes	TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:68007843C>T	uc003xxi.2	+	8	962	c.931C>T	c.(931-933)CGT>TGT	p.R311C	CSPP1_uc003xxg.1_Missense_Mutation_p.R303C|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Missense_Mutation_p.R276C|CSPP1_uc003xxk.2_5'UTR	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	311						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			TAATGAGGATCGTGTTTTTGA	0.373													12	77					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	8	73150434	73150434	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:73150434C>T	uc010lzg.2	-	7	810	c.274G>A	c.(274-276)GAA>AAA	p.E92K						Homo sapiens cDNA, FLJ99767.																		CCGTGCTCTTCACCTTTAGAA	0.383													9	6					0	0	0.004482	0	0
KCNB2	9312	broad.mit.edu	37	8	73849559	73849559	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:73849559G>A	uc003xzb.2	+	3	2557	c.1969G>A	c.(1969-1971)GAG>AAG	p.E657K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	657	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TCTATCCAGAGAGAAAGGACC	0.577													34	43					0	0	0.003755	0	0
ZBTB10	65986	broad.mit.edu	37	8	81412391	81412391	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:81412391A>T	uc003ybx.3	+	2	2233	c.1635A>T	c.(1633-1635)GAA>GAT	p.E545D	ZBTB10_uc003ybv.3_Missense_Mutation_p.E253D|ZBTB10_uc003ybw.3_Missense_Mutation_p.E545D|ZBTB10_uc010lzt.2_Missense_Mutation_p.E545D	NM_001105539	NP_001099009	Q96DT7	ZBT10_HUMAN	zinc finger and BTB domain containing 10 isoform	545					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			lung(1)	1	all_cancers(3;1.68e-09)|all_epithelial(4;5.13e-11)|Lung NSC(7;1.75e-07)|all_lung(9;7.38e-07)|Breast(3;2.96e-06)		BRCA - Breast invasive adenocarcinoma(6;0.000434)|Epithelial(68;0.00486)|all cancers(69;0.0296)			GATCTCCTGAAATGGCTGAAA	0.393													10	19					0	0	0.008291	0	0
SLC7A13	157724	broad.mit.edu	37	8	87229736	87229736	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:87229736C>T	uc003ydq.1	-	3	1240	c.1142G>A	c.(1141-1143)CGG>CAG	p.R381Q	SLC7A13_uc003ydr.1_Missense_Mutation_p.R372Q	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	381	Cytoplasmic (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						CTGGTATCTCCGCCTTAGTAT	0.289													5	53					0	0	0.000602	0	0
FBXO43	286151	broad.mit.edu	37	8	101154218	101154218	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:101154218A>T	uc003yjd.2	-	2	977	c.264T>A	c.(262-264)AAT>AAA	p.N88K	FBXO43_uc003yje.2_Missense_Mutation_p.N54K|FBXO43_uc010mbp.1_Missense_Mutation_p.N88K	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	88					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			CTTTATCTATATTATCAAAGC	0.368													9	46					0	0	0.004482	0	0
TRHR	7201	broad.mit.edu	37	8	110099751	110099751	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:110099751G>A	uc003ymz.3	+	1	26	c.10G>A	c.(10-12)GAG>AAG	p.E4K		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	4	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			GATGGAAAACGAGACAGTCAG	0.458													38	47					0	0	0.014410	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110422196	110422196	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:110422196G>A	uc003yne.2	+	19	2178	c.2074G>A	c.(2074-2076)GAT>AAT	p.D692N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	692	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTATGAAACTGATTTTAATCT	0.299										HNSCC(38;0.096)			13	19					0	0	0.002450	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457224	110457224	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:110457224C>T	uc003yne.2	+	38	5230	c.5126C>T	c.(5125-5127)GCC>GTC	p.A1709V		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1709	IPT/TIG 9.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AATTATACGGCCATTGAATGT	0.458										HNSCC(38;0.096)			32	287					0	0	0.003271	0	0
CSMD3	114788	broad.mit.edu	37	8	113317024	113317024	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:113317024C>T	uc003ynu.2	-	52	8351	c.8192G>A	c.(8191-8193)GGA>GAA	p.G2731E	CSMD3_uc003yns.2_Missense_Mutation_p.G1933E|CSMD3_uc003ynt.2_Missense_Mutation_p.G2691E|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2731	Extracellular (Potential).|Sushi 16.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGGACCTAGTCCATGATAACC	0.398										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			81	73					0	0	0.014410	0	0
CSMD3	114788	broad.mit.edu	37	8	113318352	113318352	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:113318352G>A	uc003ynu.2	-	51	8114	c.7955C>T	c.(7954-7956)ACG>ATG	p.T2652M	CSMD3_uc003yns.2_Missense_Mutation_p.T1854M|CSMD3_uc003ynt.2_Missense_Mutation_p.T2612M|CSMD3_uc011lhx.1_Missense_Mutation_p.T2548M	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2652	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GGTAACTCGCGTTCCTACCAA	0.383										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			11	117					0	0	0.010729	0	0
SNTB1	6641	broad.mit.edu	37	8	121587439	121587439	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:121587439C>T	uc010mdg.2	-	4	1249	c.1023G>A	c.(1021-1023)TGG>TGA	p.W341*	SNTB1_uc003ype.2_Nonsense_Mutation_p.W341*	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	341	PH 2.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			GGGCTGGTTTCCACTGTTTCT	0.493													40	152					0	0	0.014410	0	0
FER1L6	654463	broad.mit.edu	37	8	125082755	125082755	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:125082755G>A	uc003yqw.2	+	30	4088	c.3882G>A	c.(3880-3882)TGG>TGA	p.W1294*	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1294	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TTGAAGACTGGGTGAAAACTT	0.418													33	179					0	0	0.003271	0	0
TRIB1	10221	broad.mit.edu	37	8	126448443	126448443	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:126448443C>T	uc003yrx.2	+	3	1431	c.849C>T	c.(847-849)CCC>CCT	p.P283P	TRIB1_uc011lis.1_Silent_p.P117P|TRIB1_uc010mdn.2_Silent_p.P52P	NM_025195	NP_079471	Q96RU8	TRIB1_HUMAN	G-protein-coupled receptor induced protein	283	Protein kinase.				JNK cascade|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|regulation of MAP kinase activity|response to lipopolysaccharide	cytoplasm|nucleus	ATP binding|mitogen-activated protein kinase kinase binding|protein kinase activity|protein kinase inhibitor activity|transcription factor binding|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			lung(1)	1	all_hematologic(1;4.97e-05)|Ovarian(258;0.00167)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			GACGATACCCCTTCCATGACT	0.567													63	46					0	0	0.014410	0	0
EFR3A	23167	broad.mit.edu	37	8	133023051	133023051	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:133023051C>T	uc003yte.2	+	23	2576	c.2375C>T	c.(2374-2376)CCA>CTA	p.P792L		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	792						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			CCTCCCAGTCCATCAGGAACA	0.428													14	73					0	0	0.004007	0	0
TG	7038	broad.mit.edu	37	8	133925383	133925383	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:133925383C>T	uc003ytw.2	+	20	4292	c.4251C>T	c.(4249-4251)TTC>TTT	p.F1417F	TG_uc010mdw.2_Silent_p.F176F	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1417					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CCAAGACGTTCCCAGCGGAAA	0.547													43	37					0	0	0.014410	0	0
KHDRBS3	10656	broad.mit.edu	37	8	136470166	136470166	+	Silent	SNP	C	T	T	rs147742474		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:136470166C>T	uc003yuv.2	+	1	451	c.57C>T	c.(55-57)TCC>TCT	p.S19S	KHDRBS3_uc003yuw.2_Silent_p.S19S	NM_006558	NP_006549	O75525	KHDR3_HUMAN	KH domain containing, RNA binding, signal	19					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	SH3 domain binding			ovary(2)	2	all_epithelial(106;2.85e-16)|all_neural(2;2.72e-06)|Lung NSC(106;3.95e-06)|all_lung(105;1.11e-05)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.247)			TGGACCCCTCCTTCACGCACG	0.716													4	21					0	0	0.001168	0	0
DENND3	22898	broad.mit.edu	37	8	142178127	142178127	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:142178127C>G	uc003yvy.2	+	13	1816	c.1538C>G	c.(1537-1539)CCG>CGG	p.P513R	DENND3_uc010mep.2_Missense_Mutation_p.P474R|DENND3_uc003yvz.1_Missense_Mutation_p.P197R	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	513										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CCGAAGTCCCCGTATACATTC	0.502													51	204					0	0	0.014410	0	0
ZC3H3	23144	broad.mit.edu	37	8	144550407	144550407	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr8:144550407G>A	uc003yyd.2	-	8	2176	c.2147C>T	c.(2146-2148)CCC>CTC	p.P716L		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	716	C3H1-type 2.				mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			GTGGGAGAAGGGGCAGGTCCC	0.667													46	40					0	0	0.014410	0	0
CER1	9350	broad.mit.edu	37	9	14722314	14722314	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:14722314C>T	uc003zlj.2	-	1	402	c.357G>A	c.(355-357)ATG>ATA	p.M119I		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	119					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		TCTCCATTTTCATTCCATCTA	0.507													13	49					0	0	0.001855	0	0
KIAA1797	54914	broad.mit.edu	37	9	20953018	20953018	+	Silent	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:20953018T>C	uc003zog.1	+	37	4449	c.4086T>C	c.(4084-4086)AGT>AGC	p.S1362S	KIAA1797_uc003zoh.1_Silent_p.S798S	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1362						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		CTGAAAGCAGTTTTATTGGAG	0.368													21	38					0	0	0.002780	0	0
TEK	7010	broad.mit.edu	37	9	27192519	27192519	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:27192519G>A	uc003zqi.3	+	11	1964	c.1522G>A	c.(1522-1524)GAA>AAA	p.E508K	TEK_uc011lno.1_Missense_Mutation_p.E465K|TEK_uc011lnp.1_Missense_Mutation_p.E361K|TEK_uc003zqj.1_Missense_Mutation_p.E442K	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	508	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CAACTATTTGGAACCTCGGAC	0.473													37	110					0	0	0.006999	0	0
RECK	8434	broad.mit.edu	37	9	36087794	36087794	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:36087794C>T	uc003zyv.2	+	9	827	c.741C>T	c.(739-741)ATC>ATT	p.I247I	RECK_uc003zyw.2_Silent_p.I119I|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	247	Knot 4.|5 X Knot repeats.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			ATGGTCTCATCGAGGGTTGTA	0.468													24	45					0	0	0.004656	0	0
FRMPD1	22844	broad.mit.edu	37	9	37740121	37740121	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:37740121G>A	uc004aag.1	+	15	1640	c.1596G>A	c.(1594-1596)GTG>GTA	p.V532V	FRMPD1_uc004aah.1_Silent_p.V532V|FRMPD1_uc011lqm.1_Silent_p.V354V|FRMPD1_uc011lqn.1_Silent_p.V401V	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	532						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		CCTCTGAGGTGGACTGCGTAC	0.547													36	84					0	0	0.004878	0	0
PRKACG	5568	broad.mit.edu	37	9	71628660	71628660	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:71628660G>A	uc004agy.2	-	1	380	c.349C>T	c.(349-351)CTG>TTG	p.L117L		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	117	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						ACCAGGTACAGGTAGGAGTTG	0.572													22	67					0	0	0.002780	0	0
C9orf135	138255	broad.mit.edu	37	9	72435858	72435858	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:72435858C>T	uc004ahl.2	+	1	128	c.63C>T	c.(61-63)ATC>ATT	p.I21I	C9orf135_uc011lrw.1_5'UTR|C9orf135_uc010moq.2_5'UTR|C9orf135_uc011lrx.1_RNA|C9orf135_uc010mop.2_Silent_p.I21I|uc004ahk.2_5'Flank	NM_001010940	NP_001010940	Q5VTT2	CI135_HUMAN	hypothetical protein LOC138255	21	Extracellular (Potential).					integral to membrane				ovary(1)	1						GGTTGGAGATCGGACCACCGG	0.577													16	39					0	0	0.004007	0	0
SMC5	23137	broad.mit.edu	37	9	72893539	72893539	+	Missense_Mutation	SNP	G	A	A	rs141003657	by1000genomes	TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:72893539G>A	uc004ahr.2	+	5	793	c.676G>A	c.(676-678)GAG>AAG	p.E226K		NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	226	Potential.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						AAAACAGCTCGAGGTACTTTA	0.358													12	38					0	0	0.001855	0	0
VPS13A	23230	broad.mit.edu	37	9	79946935	79946935	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:79946935C>T	uc004akr.2	+	46	6261	c.6001C>T	c.(6001-6003)CAT>TAT	p.H2001Y	VPS13A_uc004akp.3_Missense_Mutation_p.H2001Y|VPS13A_uc004akq.3_Missense_Mutation_p.H2001Y|VPS13A_uc004aks.2_Missense_Mutation_p.H1962Y|VPS13A_uc004akt.2_Missense_Mutation_p.H341Y	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2001					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						GATAAGAAATCATTTTTCAGT	0.313													39	114					0	0	0.013114	0	0
Unknown	0	broad.mit.edu	37	9	90745035	90745035	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:90745035C>T	uc011lti.1	-	4	2946	c.2917G>A	c.(2917-2919)GGA>AGA	p.G973R	uc004apx.1_5'Flank					SubName: Full=cDNA FLJ59639;																		GTCCTCAATCCTTGAAACATT	0.473													27	86					0	0	0.003271	0	0
SYK	6850	broad.mit.edu	37	9	93650807	93650807	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:93650807G>A	uc004aqz.2	+	13	1938	c.1733G>A	c.(1732-1734)GGA>GAA	p.G578E	SYK_uc004ara.2_Missense_Mutation_p.G555E|SYK_uc004arb.2_Missense_Mutation_p.G555E|SYK_uc004arc.2_Missense_Mutation_p.G578E|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	578	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						GGGATGAAAGGAAGTGAAGTC	0.403			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								7	14					0	0	0.006214	0	0
IARS	3376	broad.mit.edu	37	9	95022473	95022473	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:95022473G>A	uc004art.1	-	18	2088	c.1831C>T	c.(1831-1833)CCA>TCA	p.P611S	IARS_uc004ars.1_Missense_Mutation_p.P456S|IARS_uc004aru.3_Missense_Mutation_p.P611S|IARS_uc010mqr.2_Missense_Mutation_p.P501S|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	611					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	ATGGAAACTGGATCTGGATAA	0.378													20	108					0	0	0.002780	0	0
SUSD3	203328	broad.mit.edu	37	9	95846867	95846867	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:95846867G>A	uc004atb.2	+	5	642	c.606G>A	c.(604-606)GTG>GTA	p.V202V	SUSD3_uc004atc.2_Silent_p.V189V	NM_145006	NP_659443	Q96L08	SUSD3_HUMAN	sushi domain containing 3	202	Cytoplasmic (Potential).					integral to membrane				breast(2)|skin(2)|ovary(1)|lung(1)	6						CCCGCAGCGTGGACAAGGACC	0.592													21	54					0	0	0.010504	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432661	104432661	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:104432661C>T	uc004bbp.1	-	3	2634	c.2033G>A	c.(2032-2034)TGG>TAG	p.W678*	GRIN3A_uc004bbq.1_Nonsense_Mutation_p.W678*	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	678	Helical; (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	AATCCCCAGCCACATTGTCCA	0.522													35	75					0	0	0.003271	0	0
OR13C8	138802	broad.mit.edu	37	9	107331891	107331891	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:107331891C>T	uc011lvo.1	+	1	443	c.443C>T	c.(442-444)TCC>TTC	p.S148F		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GCAGCTGGGTCCTGGGTCACT	0.493													26	54					0	0	0.008361	0	0
SVEP1	79987	broad.mit.edu	37	9	113312198	113312199	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:113312198_113312199CC>TT	uc010mtz.2	-	2	1054_1055	c.717_718GG>AA	c.(715-720)AAGGAG>AAAAAG	p.E240K	SVEP1_uc010mua.1_Missense_Mutation_p.E240K|SVEP1_uc004beu.2_Missense_Mutation_p.E240K|SVEP1_uc004bev.2_5'UTR	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	240	VWFA.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CAGTGCTCCTCCTTTGGGGTGG	0.475													3	21					0	0	0.004672	0	0
MUSK	4593	broad.mit.edu	37	9	113563006	113563006	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:113563006C>T	uc004bey.2	+	14	2446	c.2348C>T	c.(2347-2349)TCT>TTT	p.S783F	MUSK_uc004bez.1_Missense_Mutation_p.S363F	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	783	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						ACTACAGAGTCTGATGTGTGG	0.498													13	40					0	0	0.013537	0	0
DFNB31	25861	broad.mit.edu	37	9	117168916	117168916	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:117168916G>T	uc004biz.3	-	9	2604	c.1955C>A	c.(1954-1956)GCC>GAC	p.A652D	DFNB31_uc004bix.2_Missense_Mutation_p.A301D|DFNB31_uc004biy.3_Missense_Mutation_p.A269D|DFNB31_uc004bja.3_Missense_Mutation_p.A652D	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	652	Pro-rich.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GGAGACGGAGGCATAGATGGG	0.672													22	54					2.39556e-15	2.443e-15	0.002780	1	0
ASTN2	23245	broad.mit.edu	37	9	119903705	119903705	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:119903705C>T	uc004bjs.1	-	4	1169	c.1068G>A	c.(1066-1068)AAG>AAA	p.K356K	ASTN2_uc004bjr.1_Silent_p.K356K|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	356	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GGAAACTCTCCTTGAACTTCT	0.592													7	37					0	0	0.004482	0	0
LHX6	26468	broad.mit.edu	37	9	124971981	124971981	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:124971981C>T	uc010mvw.2	-	8	1092	c.983G>A	c.(982-984)GGG>GAG	p.G328E	LHX6_uc004blx.3_Missense_Mutation_p.G357E|LHX6_uc004bly.3_Intron	NM_014368	NP_055183	Q9UPM6	LHX6_HUMAN	LIM homeobox protein 6 isoform 1	328					cell maturation|cerebral cortex GABAergic interneuron migration|cerebral cortex radially oriented cell migration|cerebral cortex tangential migration	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						gtgcacctgcccgcactgtac	0.199													25	37					0	0	0.004656	0	0
OR1N1	138883	broad.mit.edu	37	9	125289194	125289194	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:125289194G>A	uc004bmn.1	-	1	379	c.379C>T	c.(379-381)CCC>TCC	p.P127S		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						TAGCAGAGGGGGTGGCAAATG	0.527													16	37					0	0	0.004990	0	0
OR1N2	138882	broad.mit.edu	37	9	125316247	125316247	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:125316247C>T	uc011lyx.1	+	1	799	c.799C>T	c.(799-801)CTC>TTC	p.L267F		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	267	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						GGTGGTTCTGCTCTTCTATGG	0.473													25	74					0	0	0.006320	0	0
RABGAP1	23637	broad.mit.edu	37	9	125865465	125865465	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:125865465C>T	uc011lzh.1	+	26	3317	c.3183C>T	c.(3181-3183)ACC>ACT	p.T1061T	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc011lzj.1_Silent_p.T400T	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	1061					cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						AGACAGCAACCGGGGTTCAAG	0.522											OREG0019466	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	84					0	0	0.010504	0	0
PBX3	5090	broad.mit.edu	37	9	128678003	128678003	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:128678003G>A	uc004bqb.2	+	3	429	c.313G>A	c.(313-315)GAT>AAT	p.D105N	PBX3_uc004bqc.2_Intron|PBX3_uc004bqd.2_Intron|PBX3_uc011lzw.1_Missense_Mutation_p.D30N|PBX3_uc011lzx.1_Missense_Mutation_p.D16N|PBX3_uc004bqe.2_5'UTR	NM_006195	NP_006186	P40426	PBX3_HUMAN	pre-B-cell leukemia homeobox 3 isoform 1	105					anterior compartment pattern formation|posterior compartment specification		sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						GGACCCTCCCGATCCCCAGCT	0.458													14	25					0	0	0.001855	0	0
RALGPS1	9649	broad.mit.edu	37	9	129937044	129937044	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:129937044C>T	uc004bqo.1	+	11	1160	c.893C>T	c.(892-894)TCC>TTC	p.S298F	RALGPS1_uc011mab.1_Missense_Mutation_p.S298F|RALGPS1_uc011mac.1_Missense_Mutation_p.S298F|RALGPS1_uc004bqq.3_Missense_Mutation_p.S298F	NM_014636	NP_055451	Q5JS13	RGPS1_HUMAN	Ral GEF with PH domain and SH3 binding motif 1	298					small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity			ovary(1)	1						CTAGTCTCTTCCAAGGAAGAT	0.493													30	78					0	0	0.010818	0	0
ODF2	4957	broad.mit.edu	37	9	131255052	131255052	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:131255052C>T	uc011mbd.1	+	16	2031	c.1720C>T	c.(1720-1722)CTT>TTT	p.L574F	ODF2_uc011maz.1_Missense_Mutation_p.L574F|ODF2_uc011mbb.1_Missense_Mutation_p.L508F|ODF2_uc011mbc.1_Missense_Mutation_p.L493F|ODF2_uc004bva.2_Missense_Mutation_p.L527F|ODF2_uc004bvb.2_Missense_Mutation_p.L550F|ODF2_uc011mbe.1_Missense_Mutation_p.L569F|ODF2_uc004bvc.2_Missense_Mutation_p.L550F|ODF2_uc011mbf.1_Missense_Mutation_p.L555F|ODF2_uc004bvd.3_Missense_Mutation_p.L574F|ODF2_uc004bve.2_Missense_Mutation_p.L555F	NM_002540	NP_002531	Q5BJF6	ODFP2_HUMAN	outer dense fiber of sperm tails 2 isoform 1	574	Potential.				cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centriole|cilium|cytosol|microtubule|spindle pole	protein binding|structural molecule activity			ovary(1)	1						GAACAAGATCCTTAAAGATGA	0.448													8	38					0	0	0.004482	0	0
GTF3C5	9328	broad.mit.edu	37	9	135929310	135929310	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:135929310C>T	uc004cci.3	+	6	1306	c.969C>T	c.(967-969)ATC>ATT	p.I323I	GTF3C5_uc010mzz.2_Silent_p.I198I|GTF3C5_uc004ccj.3_Silent_p.I323I	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	323						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		ATTTCCGAATCCGTTGTGGAA	0.438													12	37					0	0	0.001855	0	0
CEL	1056	broad.mit.edu	37	9	135942011	135942011	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:135942011C>T	uc010naa.1	+	5	658	c.642C>T	c.(640-642)TTC>TTT	p.F214F		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	211					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		TCACGCTCTTCGGGGAGTCTG	0.622													38	77					0	0	0.014410	0	0
ABO	28	broad.mit.edu	37	9	136131230	136131230	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:136131230G>A	uc004cda.1	-	8	913	c.888C>T	c.(886-888)ATC>ATT	p.I296I	ABO_uc010naf.1_Silent_p.I155I|ABO_uc011mcz.1_Silent_p.I155I|ABO_uc010nag.1_Silent_p.I155I	NM_020469	NP_065202	P16442	BGAT_HUMAN	ABO blood group (alpha	296	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	fucosylgalactoside 3-alpha-galactosyltransferase activity|glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity|metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(145;5.82e-06)|Epithelial(140;3.45e-05)		ACACGGCCTCGATGCCGTTGG	0.647													18	43					0	0	0.012319	0	0
KIAA0649	9858	broad.mit.edu	37	9	138377523	138377523	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:138377523C>T	uc004cfr.1	+	4	1716	c.1167C>T	c.(1165-1167)CCC>CCT	p.P389P		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	389						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		GGGACCTGCCCCAGAGGGTCC	0.627													8	25					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	X	2541473	2541473	+	RNA	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:2541473C>T	uc004cqi.1	+	8		c.563C>T			uc004cqj.1_RNA|uc004cqk.1_RNA					Homo sapiens cDNA FLJ13471 fis, clone PLACE1003566.																		AAATCCAAACCCCAAGCAGCC	0.458													8	32					0	0	0.010729	0	0
MXRA5	25878	broad.mit.edu	37	X	3228258	3228258	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:3228258G>A	uc004crg.3	-	7	8143	c.7986C>T	c.(7984-7986)CCC>CCT	p.P2662P		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2662	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GCCCAGCCCCGGGAGGGGTGC	0.592													26	21					0	0	0.004656	0	0
MSL3	10943	broad.mit.edu	37	X	11782026	11782026	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:11782026C>T	uc004cuw.2	+	8	982	c.877C>T	c.(877-879)CCA>TCA	p.P293S	MSL3_uc004cuv.1_Missense_Mutation_p.P293S|MSL3_uc004cux.2_Missense_Mutation_p.P234S|MSL3_uc011mig.1_Missense_Mutation_p.P144S|MSL3_uc011mih.1_Missense_Mutation_p.P281S|MSL3_uc004cuy.2_Missense_Mutation_p.P127S|MSL3_uc011mii.1_Missense_Mutation_p.P127S	NM_078629	NP_523353	Q8N5Y2	MS3L1_HUMAN	male-specific lethal 3-like 1 isoform a	293					histone H4-K16 acetylation|multicellular organismal development|transcription from RNA polymerase II promoter	MSL complex	DNA binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATTTTTTCTTCCAATTAAGGA	0.373													17	13					0	0	0.004990	0	0
FAM9C	171484	broad.mit.edu	37	X	13058954	13058954	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:13058954C>T	uc004cvh.1	-	5	462	c.252G>A	c.(250-252)AGG>AGA	p.R84R	FAM9C_uc004cvg.2_Silent_p.R84R	NM_174901	NP_777561	Q8IZT9	FAM9C_HUMAN	family with sequence similarity 9, member C	84						nucleus					0						TCTTTTCAATCCTTTTTCTCT	0.294													6	4					0	0	0.003080	0	0
ZFX	7543	broad.mit.edu	37	X	24229353	24229353	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:24229353T>G	uc004dbf.2	+	9	2536	c.2278T>G	c.(2278-2280)TCA>GCA	p.S760A	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Missense_Mutation_p.S799A|ZFX_uc010nfz.2_Missense_Mutation_p.S416A	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	760	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						TACAGATGCCTCAGGCTTTAA	0.448													64	79					0	0	0.014410	0	0
FAM47A	158724	broad.mit.edu	37	X	34148922	34148922	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:34148922G>A	uc004ddg.2	-	1	1507	c.1474C>T	c.(1474-1476)CAC>TAC	p.H492Y		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	492										ovary(4)|central_nervous_system(1)	5						GGCTGCGAGTGGAGACTGGAC	0.637													21	23					0	0	0.003330	0	0
CXorf59	286464	broad.mit.edu	37	X	36117968	36117968	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:36117968G>A	uc004ddk.1	+	7	1010	c.824G>A	c.(823-825)TGG>TAG	p.W275*		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	275						integral to membrane				central_nervous_system(1)	1						AAACGGGCATGGACAGATGTA	0.333													17	27					0	0	0.008871	0	0
UXT	8409	broad.mit.edu	37	X	47516644	47516644	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:47516644G>A	uc004din.2	-	5	350	c.294C>T	c.(292-294)TTC>TTT	p.F98F	UXT_uc004dim.2_Silent_p.F110F|LOC100133957_uc011mls.1_5'Flank|LOC100133957_uc011mlt.1_5'Flank	NM_004182	NP_004173	Q9UBK9	UXT_HUMAN	ubiquitously-expressed transcript isoform 2	98					centrosome organization|mitochondrion transport along microtubule|protein folding	centrosome|nucleus|prefoldin complex	beta-tubulin binding|microtubule binding|unfolded protein binding				0						TCAACTCCAGGAAAAAACCAT	0.418													5	5					0	0	0.001984	0	0
SLC7A3	84889	broad.mit.edu	37	X	70148819	70148819	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:70148819G>A	uc004dyn.2	-	3	562	c.404C>T	c.(403-405)GCT>GTT	p.A135V	SLC7A3_uc004dyo.2_Missense_Mutation_p.A135V	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	135	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GTTGTCAAAAGCAGAGCTCCA	0.537													20	18					0	0	0.004656	0	0
PHKA1	5255	broad.mit.edu	37	X	71840661	71840661	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:71840661C>T	uc004eax.3	-	19	2352	c.2051G>A	c.(2050-2052)GGA>GAA	p.G684E	PHKA1_uc004eay.3_Missense_Mutation_p.G684E|PHKA1_uc011mqi.1_Intron	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	684					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					ATCTAGCCCTCCCTTCTGTGA	0.512													25	16					0	0	0.005443	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83419355	83419356	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:83419355_83419356CC>TT	uc004eej.1	-	2	198_199	c.121_122GG>AA	c.(121-123)GGA>AAA	p.G41K	RPS6KA6_uc011mqt.1_Missense_Mutation_p.G41K|RPS6KA6_uc011mqu.1_5'UTR	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	41					axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						ATCTGCTTCTCCCTCTTCCATT	0.312													13	27					0	0	0.004672	0	0
ARMCX2	9823	broad.mit.edu	37	X	100911032	100911032	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:100911032G>A	uc004eid.2	-	3	1898	c.1543C>T	c.(1543-1545)CGT>TGT	p.R515C	ARMCX2_uc004eie.3_Missense_Mutation_p.R515C|ARMCX2_uc004eif.3_Missense_Mutation_p.R515C|ARMCX2_uc004eig.3_Missense_Mutation_p.R515C|ARMCX2_uc010nnt.2_Missense_Mutation_p.R515C	NM_177949	NP_808818	Q7L311	ARMX2_HUMAN	ALEX2 protein	515	ARM 3.					integral to membrane	binding			ovary(6)	6						GATAGCAAACGGAAAAAGTTT	0.363													40	57					0	0	0.011902	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106109209	106109209	+	Silent	SNP	T	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:106109209T>C	uc004emo.2	+	16	2773	c.2608T>C	c.(2608-2610)TTA>CTA	p.L870L	MORC4_uc004emp.3_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	870	EF-hand.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						ATTCAGATTGTTAGATGAAAA	0.368													30	24					0	0	0.007291	0	0
COL4A5	1287	broad.mit.edu	37	X	107815042	107815042	+	Missense_Mutation	SNP	G	A	A	rs104886053		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:107815042G>A	uc004enz.1	+	8	642	c.440G>A	c.(439-441)GGA>GAA	p.G147E	COL4A5_uc011mso.1_Missense_Mutation_p.G147E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	147	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TAATAATAGGGACCCCCTGGG	0.348									Alport_syndrome_with_Diffuse_Leiomyomatosis				11	8					0	0	0.001855	0	0
ATP11C	286410	broad.mit.edu	37	X	138878606	138878606	+	Silent	SNP	G	A	A			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:138878606G>A	uc004faz.2	-	12	1140	c.1041C>T	c.(1039-1041)TTC>TTT	p.F347F	ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Silent_p.F347F	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	347	Helical; (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					TAAATGATAGGAAGTCGGTGA	0.318													30	29					0	0	0.005524	0	0
CDR1	1038	broad.mit.edu	37	X	139865809	139865809	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:139865809C>T	uc004fbg.1	-	1	915	c.723G>A	c.(721-723)TGG>TGA	p.W241*	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	241											0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				TCAGTGTCTTCCAGAAAGAAA	0.423													53	47					0	0	0.014410	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995266	140995266	+	Silent	SNP	C	T	T			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:140995266C>T	uc004fbt.2	+	4	2362	c.2076C>T	c.(2074-2076)CTC>CTT	p.L692L	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	692							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGTCTCCTCTCCAAATTCCTC	0.567										HNSCC(15;0.026)			20	17					0	0	0.010504	0	0
GABRA3	2556	broad.mit.edu	37	X	151453208	151453208	+	Splice_Site	SNP	C	T	T	rs144364391		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:151453208C>T	uc010ntk.1	-	4	503	c.263_splice	c.e4-1	p.D88_splice		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3						gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GTCACTGCATCTGCGTGAAAG	0.438													29	14					0	0	0.010818	0	0
KIAA1751	85452	broad.mit.edu	37	1	1897924	1897929	+	In_Frame_Del	DEL	CAGCAA	-	-	rs60018876		TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:1897924_1897929delCAGCAA	uc001aim.1	-	12	1438_1443	c.1282_1287delTTGCTG	c.(1282-1287)TTGCTGdel	p.LL428del	KIAA1751_uc009vkz.1_In_Frame_Del_p.LL428del	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	428_429										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		AAACGACTTCCAGCAACCGAGAGGGC	0.587													6	12	---	---	---	---					
LAMC1	3915	broad.mit.edu	37	1	183100434	183100434	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr1:183100434delT	uc001gpy.3	+	20	3744	c.3487delT	c.(3487-3489)TCAfs	p.S1163fs		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	1163	Potential.|Domain II and I.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCTGTGCAGTCAGTCACTCA	0.388													24	208	---	---	---	---					
ANXA7	310	broad.mit.edu	37	10	75143420	75143420	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr10:75143420delA	uc001jtz.2	-	9	801	c.728delT	c.(727-729)TTAfs	p.L243fs	ANXA7_uc001jua.2_Frame_Shift_Del_p.L221fs|ANXA7_uc001jub.2_Frame_Shift_Del_p.L181fs|ANXA7_uc010qki.1_Frame_Shift_Del_p.L131fs|ANXA7_uc009xre.2_Frame_Shift_Del_p.L150fs|ANXA7_uc009xrf.1_Frame_Shift_Del_p.L163fs	NM_004034	NP_004025	P20073	ANXA7_HUMAN	annexin VII isoform 2	243	Annexin 1.						calcium ion binding|calcium-dependent phospholipid binding|calcium-dependent protein binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					ATTTCCACTTAACTCTGATTT	0.358													17	31	---	---	---	---					
OTX2	5015	broad.mit.edu	37	14	57268851	57268852	+	Frame_Shift_Ins	INS	-	GATG	GATG			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr14:57268851_57268852insGATG	uc001xcp.2	-	3	642_643	c.471_472insCATC	c.(469-474)ATCTCCfs	p.I157fs	OTX2_uc010aou.2_Frame_Shift_Ins_p.I157fs|OTX2_uc001xcq.2_Frame_Shift_Ins_p.I165fs	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	157_158					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					GACAGTGGGGAGATGGAAGCTG	0.545													20	77	---	---	---	---					
CHD9	80205	broad.mit.edu	37	16	53338468	53338470	+	In_Frame_Del	DEL	TCC	-	-			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr16:53338468_53338470delTCC	uc002ehb.2	+	30	6714_6716	c.6550_6552delTCC	c.(6550-6552)TCCdel	p.S2193del	CHD9_uc002egy.2_In_Frame_Del_p.S2193del|CHD9_uc002ehc.2_In_Frame_Del_p.S2193del|CHD9_uc002ehf.2_In_Frame_Del_p.S1307del|CHD9_uc010cbw.2_Intron|CHD9_uc002ehg.1_In_Frame_Del_p.S199del	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2193	Ser-rich.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				ctccacctcttcctcctcctcct	0.232													2	4	---	---	---	---					
C3orf32	51066	broad.mit.edu	37	3	8661633	8661644	+	In_Frame_Del	DEL	TAGACATAAGTC	-	-			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr3:8661633_8661644delTAGACATAAGTC	uc003bqu.2	-	12	1218_1229	c.972_983delGACTTATGTCTA	c.(970-984)AAGACTTATGTCTAC>AAC	p.324_328KTYVY>N	C3orf32_uc003bqz.2_In_Frame_Del_p.324_328KTYVY>N|C3orf32_uc003bqs.1_RNA|C3orf32_uc003bqt.2_In_Frame_Del_p.273_277KTYVY>N|C3orf32_uc011atg.1_In_Frame_Del_p.346_350KTYVY>N|C3orf32_uc003bqv.2_In_Frame_Del_p.273_277KTYVY>N|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_RNA|C3orf32_uc003bqy.2_In_Frame_Del_p.324_328KTYVY>N	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	324_328										skin(1)	1						ATAGATGTAGTAGACATAAGTCTTTCCTTGGT	0.453													11	99	---	---	---	---					
SENP6	26054	broad.mit.edu	37	6	76376441	76376443	+	In_Frame_Del	DEL	TGA	-	-			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr6:76376441_76376443delTGA	uc003pid.3	+	10	1627_1629	c.1008_1010delTGA	c.(1006-1011)AGTGAT>AGT	p.D341del	SENP6_uc003pie.3_In_Frame_Del_p.D334del|SENP6_uc010kbf.2_RNA|SENP6_uc003pic.2_In_Frame_Del_p.D334del|SENP6_uc003pif.1_In_Frame_Del_p.D232del	NM_015571	NP_056386	Q9GZR1	SENP6_HUMAN	SUMO1/sentrin specific peptidase 6 isoform 1	341					proteolysis	cytoplasm|nucleus	cysteine-type peptidase activity			breast(2)|urinary_tract(1)|ovary(1)|lung(1)|skin(1)	6		all_hematologic(105;0.189)				TTTTGTCCAGTGATGATGATGAT	0.296													7	69	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	90744800	90744801	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chr9:90744800_90744801insC	uc011lti.1	-	4	3180_3181	c.3151_3152insG	c.(3151-3153)GAAfs	p.E1051fs	uc004apx.1_5'Flank					SubName: Full=cDNA FLJ59639;																		CCTCTCAGCTTCAGCACTGCTG	0.480													23	87	---	---	---	---					
DDX3X	1654	broad.mit.edu	37	X	41202462	41202468	+	Splice_Site	DEL	TTAACAG	-	-			TCGA-DA-A1I0-06A-11D-A20D-08	TCGA-DA-A1I0-10B-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0e033bc-8e97-4322-b3b1-8626f1e2449b	74f05e46-0aeb-4a0e-924f-546b009bf0a3	g.chrX:41202462_41202468delTTAACAG	uc004dfe.2	+	7	1399	c.544_splice	c.e7-1	p.F182_splice	DDX3X_uc010nhf.1_Splice_Site_p.F166_splice|DDX3X_uc004dff.2_Splice_Site_p.F182_splice|DDX3X_uc011mkq.1_Splice_Site_p.F166_splice|DDX3X_uc011mkr.1_Splice_Site_p.F182_splice|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_Splice_Site|DDX3X_uc011mkt.1_Splice_Site	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3						interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						ATTGAATTTCTTAACAGTTCAGTGATG	0.367										HNSCC(61;0.18)			9	25	---	---	---	---					
