Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	865651	865651	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:865651C>T	uc001abw.1	+	3	269	c.189C>T	c.(187-189)CCC>CCT	p.P63P	SAMD11_uc001abv.1_Silent_p.P63P	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	63						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		GGAGTGGCCCCACCTGTGGGC	0.637													4	5					0	0	1	0	0
NADK	65220	broad.mit.edu	37	1	1688036	1688036	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:1688036G>A	uc009vkw.2	-	5	526	c.405C>T	c.(403-405)ATC>ATT	p.I135I	NADK_uc001aic.2_Silent_p.I135I|NADK_uc001aid.3_Silent_p.I135I|NADK_uc001aie.2_Silent_p.I280I|NADK_uc010nyv.1_Silent_p.I103I|NADK_uc009vkx.1_Silent_p.I13I	NM_023018	NP_075394	O95544	NADK_HUMAN	NAD kinase	135					ATP metabolic process|NAD metabolic process|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|NAD+ kinase activity|protein binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;8.75e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.33e-23)|GBM - Glioblastoma multiforme(42;1.35e-07)|Colorectal(212;0.000203)|COAD - Colon adenocarcinoma(227;0.000225)|Kidney(185;0.00265)|STAD - Stomach adenocarcinoma(132;0.00655)|BRCA - Breast invasive adenocarcinoma(365;0.00855)|KIRC - Kidney renal clear cell carcinoma(229;0.0382)|Lung(427;0.207)		CCACATACACGATCATGTTCT	0.547													15	19					0	0	1	0	0
SLC45A1	50651	broad.mit.edu	37	1	8386059	8386059	+	Silent	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:8386059C>A	uc001apb.2	+	3	672	c.672C>A	c.(670-672)CCC>CCA	p.P224P		NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	224					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TGTGCAGCCCCGCAGACCAGG	0.662													4	81					0.150653	0.151231	1	1	0
CLSTN1	22883	broad.mit.edu	37	1	9833398	9833398	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:9833398T>C	uc001aqh.2	-	2	905	c.146A>G	c.(145-147)AAC>AGC	p.N49S	CLSTN1_uc001aqi.2_Missense_Mutation_p.N49S|CLSTN1_uc010oag.1_Missense_Mutation_p.N49S	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	49	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		GGTGTTGTCGTTCTCTGTGAC	0.483													14	16					0	0	1	0	0
PGD	5226	broad.mit.edu	37	1	10477453	10477453	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:10477453C>T	uc001arc.2	+	10	1086	c.996C>T	c.(994-996)ATC>ATT	p.I332I	PGD_uc001ard.2_Silent_p.I252I|PGD_uc010oak.1_Silent_p.I310I|PGD_uc010oal.1_Silent_p.I319I	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	332					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		CTTCCAAGATCATCTCTTACG	0.507													65	73					0	0	1	0	0
CLCN6	1185	broad.mit.edu	37	1	11897473	11897474	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:11897473_11897474CC>TT	uc001ate.3	+	20	2325_2326	c.2212_2213CC>TT	c.(2212-2214)CCT>TTT	p.P738F	CLCN6_uc010oat.1_Missense_Mutation_p.P454F|CLCN6_uc010oau.1_Missense_Mutation_p.P716F|CLCN6_uc010oav.1_5'Flank|CLCN6_uc010oaw.1_5'Flank|CLCN6_uc010oax.1_5'Flank|CLCN6_uc010oay.1_5'Flank|CLCN6_uc010oaz.1_5'Flank|CLCN6_uc010oba.1_5'Flank	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	738	Cytoplasmic (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GCGGTTCCGCCCTCTGACCTTC	0.554													29	38					0	0	1	0	0
TNFRSF1B	7133	broad.mit.edu	37	1	12267016	12267016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:12267016G>A	uc001att.2	+	10	1414	c.1325G>A	c.(1324-1326)GGG>GAG	p.G442E	TNFRSF1B_uc001atu.2_Missense_Mutation_p.G247E|TNFRSF1B_uc009vnk.2_RNA	NM_001066	NP_001057	P20333	TNR1B_HUMAN	tumor necrosis factor receptor 2 precursor	442	Cytoplasmic (Potential).				apoptosis	extracellular region|integral to membrane|membrane raft|plasma membrane	tumor necrosis factor receptor activity			liver(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.72e-05)|all_lung(284;9.92e-05)|Renal(390;0.000147)|Colorectal(325;0.000584)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;5.52e-07)|COAD - Colon adenocarcinoma(227;0.000345)|BRCA - Breast invasive adenocarcinoma(304;0.000353)|Kidney(185;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00302)|STAD - Stomach adenocarcinoma(313;0.00815)|READ - Rectum adenocarcinoma(331;0.0284)	Etanercept(DB00005)|Infliximab(DB00065)	ACCCTGCTGGGGAGCACCGAA	0.632													17	28					0	0	1	0	0
DHRS3	9249	broad.mit.edu	37	1	12639420	12639420	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:12639420C>T	uc001auc.2	-	3	827	c.360G>A	c.(358-360)CTG>CTA	p.L120L	DHRS3_uc001aub.2_Silent_p.L35L|DHRS3_uc009vnm.2_Silent_p.L120L	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	120					retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	CATTGTTCACCAGGATGGTGA	0.542													15	23					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907865	12907865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:12907865C>T	uc009vno.2	-	1	373	c.278G>A	c.(277-279)GGA>GAA	p.G93E	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G93E	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	93							nucleic acid binding|nucleotide binding				0						ACCTGCGTTTCCTCGGTTCAC	0.483													19	109					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16901664	16901664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:16901664G>A	uc009vos.1	-	20	3068	c.2180C>T	c.(2179-2181)TCG>TTG	p.S727L	NBPF1_uc009vot.1_Missense_Mutation_p.S185L|NBPF1_uc001ayz.1_Missense_Mutation_p.S185L|NBPF1_uc010oce.1_Missense_Mutation_p.S456L	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	727	NBPF 3.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GGGGGCAGACGATTTCTGCAC	0.428													20	386					0	0	1	0	0
MST1P9	11223	broad.mit.edu	37	1	17085053	17085053	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:17085053C>T	uc010ock.1	-	11	1422	c.1422G>A	c.(1420-1422)AAG>AAA	p.K474K	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Silent_p.K48K	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GATCCACCCTCTTGCCACACT	0.602													4	42					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19433125	19433125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:19433125G>A	uc001bbi.2	-	83	12335	c.12331C>T	c.(12331-12333)CGT>TGT	p.R4111C	UBR4_uc001bbg.2_5'Flank|UBR4_uc001bbh.2_5'Flank	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	4111					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TTCCCCCGACGACTCAGGAAC	0.557													60	63					0	0	1	0	0
KIAA0090	23065	broad.mit.edu	37	1	19568942	19568942	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:19568942G>A	uc001bbo.2	-	5	449	c.406C>T	c.(406-408)CTG>TTG	p.L136L	KIAA0090_uc001bbp.2_Silent_p.L136L|KIAA0090_uc001bbq.2_Silent_p.L136L|KIAA0090_uc001bbr.2_Silent_p.L114L	NM_015047	NP_055862	Q8N766	K0090_HUMAN	hypothetical protein LOC23065 precursor	136	Extracellular (Potential).					integral to membrane	protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|Breast(348;0.00366)|all_lung(284;0.00519)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.84e-05)|Kidney(64;0.000191)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|GBM - Glioblastoma multiforme(114;0.005)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		GACTCCTGCAGGCCAACCAGC	0.557													15	26					0	0	1	0	0
PQLC2	54896	broad.mit.edu	37	1	19653762	19653762	+	Silent	SNP	C	T	T	rs139194294	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:19653762C>T	uc001bby.2	+	8	1012	c.660C>T	c.(658-660)TTC>TTT	p.F220F	PQLC2_uc001bbz.2_Silent_p.F155F|PQLC2_uc001bca.2_Silent_p.F220F|PQLC2_uc001bcb.2_Silent_p.F109F|PQLC2_uc001bcc.2_Silent_p.F109F	NM_017765	NP_060235	Q6ZP29	PQLC2_HUMAN	PQ loop repeat containing 2 isoform 1	220	PQ-loop 2.|Helical; (Potential).					integral to membrane					0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;1.89e-05)|Kidney(64;0.000177)|GBM - Glioblastoma multiforme(114;0.00124)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		ACTCTCTGTTCGCGCTGGTGA	0.552													18	32					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24402672	24402672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:24402672G>A	uc001bin.3	-	21	2841	c.2678C>T	c.(2677-2679)CCC>CTC	p.P893L	MYOM3_uc001bim.3_Missense_Mutation_p.P550L|MYOM3_uc001bio.2_Missense_Mutation_p.P893L	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	893	Fibronectin type-III 5.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CAGGAGCACGGGATCAGTGGG	0.617													18	53					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24434504	24434504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:24434504G>A	uc001bin.3	-	3	384	c.221C>T	c.(220-222)ACG>ATG	p.T74M	MYOM3_uc001bio.2_Missense_Mutation_p.T74M|MYOM3_uc001bip.1_Translation_Start_Site	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	74										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GGAGGAGGCCGTCAGAGCCAG	0.637													30	58					0	0	1	0	0
IL22RA1	58985	broad.mit.edu	37	1	24448010	24448010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:24448010G>A	uc001biq.1	-	7	1049	c.1010C>T	c.(1009-1011)CCC>CTC	p.P337L	IL22RA1_uc010oeg.1_Missense_Mutation_p.P269L|IL22RA1_uc009vrb.1_Missense_Mutation_p.P201L|IL22RA1_uc010oeh.1_Missense_Mutation_p.P337L	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	337	Cytoplasmic (Potential).					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		CACGTTGGAGGGCTGGAGGAT	0.642													30	68					0	0	1	0	0
TMEM50A	23585	broad.mit.edu	37	1	25679392	25679392	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:25679392C>T	uc001bke.2	+	5	444	c.294C>T	c.(292-294)TTC>TTT	p.F98F	TMEM50A_uc010oeq.1_Intron|TMEM50A_uc009vrr.2_RNA|TMEM50A_uc009vrs.2_Intron	NM_014313	NP_055128	O95807	TM50A_HUMAN	small membrane protein 1	98	Helical; (Potential).					endoplasmic reticulum|integral to membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;3.47e-27)|Colorectal(126;1.1e-08)|COAD - Colon adenocarcinoma(152;7.48e-07)|STAD - Stomach adenocarcinoma(196;0.00035)|BRCA - Breast invasive adenocarcinoma(304;0.00047)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|GBM - Glioblastoma multiforme(114;0.00106)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.204)		TTTGGCTTTTCGTTGGTTTCA	0.333													12	47					0	0	1	0	0
AIM1L	55057	broad.mit.edu	37	1	26664929	26664929	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:26664929G>A	uc001bmd.3	-	6	679	c.249C>T	c.(247-249)CCC>CCT	p.P83P	AIM1L_uc001bmf.3_5'UTR	NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like	83	Beta/gamma crystallin 'Greek key' 2.						sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		CCAGGATGTAGGGAGTGTCTT	0.562													30	85					0	0	1	0	0
DHDDS	79947	broad.mit.edu	37	1	26769298	26769298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:26769298C>T	uc001bml.2	+	4	378	c.257C>T	c.(256-258)TCC>TTC	p.S86F	DHDDS_uc001bmk.2_Missense_Mutation_p.S86F|DHDDS_uc001bmm.2_5'UTR|DHDDS_uc001bmn.2_Missense_Mutation_p.S86F|DHDDS_uc010ofd.1_Missense_Mutation_p.S86F	NM_205861	NP_995583	Q86SQ9	DHDDS_HUMAN	dehydrodolichyl diphosphate synthase isoform b	86							protein binding|transferase activity, transferring alkyl or aryl (other than methyl) groups			breast(3)	3		all_cancers(24;2.04e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.0161)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.166)|LUSC - Lung squamous cell carcinoma(448;0.239)		TTCAAACGCTCCAAGAGTGAG	0.522													35	74					0	0	1	0	0
GPR3	2827	broad.mit.edu	37	1	27720803	27720803	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:27720803G>A	uc001bod.2	+	2	596	c.501G>A	c.(499-501)CTG>CTA	p.L167L		NM_005281	NP_005272	P46089	GPR3_HUMAN	G protein-coupled receptor 3	167	Helical; Name=4; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane				ovary(1)	1		Breast(348;1.53e-05)|Ovarian(437;0.0606)|all_lung(284;0.157)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;2.81e-26)|Colorectal(126;1.24e-08)|KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;4.45e-06)|Lung(427;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|LUSC - Lung squamous cell carcinoma(448;0.008)|READ - Rectum adenocarcinoma(331;0.0419)		CCCTGGGCCTGGGGCTGCTGC	0.562													56	114					0	0	1	0	0
GMEB1	10691	broad.mit.edu	37	1	29028969	29028969	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:29028969C>T	uc001bra.2	+	7	786	c.648C>T	c.(646-648)GCC>GCT	p.A216A	GMEB1_uc001bqz.2_Silent_p.A206A|GMEB1_uc001brb.2_Silent_p.A206A	NM_006582	NP_006573	Q9Y692	GMEB1_HUMAN	glucocorticoid modulatory element binding	216					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|metal ion binding|transcription coactivator activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		CGCAGATTGCCATCTCAGAAG	0.463													21	67					0	0	1	0	0
GMEB1	10691	broad.mit.edu	37	1	29040629	29040629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:29040629C>T	uc001bra.2	+	10	1204	c.1066C>T	c.(1066-1068)CAC>TAC	p.H356Y	GMEB1_uc001bqz.2_Missense_Mutation_p.H346Y|GMEB1_uc001brb.2_Missense_Mutation_p.H346Y	NM_006582	NP_006573	Q9Y692	GMEB1_HUMAN	glucocorticoid modulatory element binding	356	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|metal ion binding|transcription coactivator activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		AGGCCAGGATCACAGGCTGAA	0.473													38	86					0	0	1	0	0
SERINC2	347735	broad.mit.edu	37	1	31896635	31896635	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:31896635C>T	uc010ogh.1	+	2	348	c.147C>T	c.(145-147)TTC>TTT	p.F49F	SERINC2_uc010ogg.1_Silent_p.F46F|SERINC2_uc009vtw.1_Silent_p.F45F|SERINC2_uc001bst.2_Silent_p.F45F|SERINC2_uc001bsu.2_5'UTR|SERINC2_uc001bsv.2_5'UTR	NM_178865	NP_849196	Q96SA4	SERC2_HUMAN	tumor differentially expressed 2-like	45	Helical; (Potential).					integral to membrane					0		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0629)|Breast(348;0.0707)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0541)|READ - Rectum adenocarcinoma(331;0.151)		TCACGTTCTTCCTCTTCCTGG	0.667													37	90					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32207058	32207058	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:32207058G>A	uc001btn.2	-	11	2064	c.1710C>T	c.(1708-1710)CTC>CTT	p.L570L	BAI2_uc010ogo.1_Silent_p.L212L|BAI2_uc010ogp.1_Silent_p.L503L|BAI2_uc010ogq.1_Silent_p.L570L|BAI2_uc001bto.2_Silent_p.L570L|BAI2_uc001btq.1_Silent_p.L503L|BAI2_uc010ogr.1_Intron	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	570	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GGGCACTGAGGAGACAGCGGC	0.632													4	9					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32259361	32259361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:32259361C>T	uc001bts.1	-	12	2579	c.2521G>A	c.(2521-2523)GAA>AAA	p.E841K	SPOCD1_uc001btr.1_5'Flank|SPOCD1_uc001btt.2_Missense_Mutation_p.E146K|SPOCD1_uc001btu.2_Missense_Mutation_p.E841K|SPOCD1_uc001btv.2_Missense_Mutation_p.E334K	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	841					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		TCCTGTGGTTCCGTGGGAGAC	0.582													30	72					0	0	1	0	0
TRIM62	55223	broad.mit.edu	37	1	33625345	33625345	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:33625345C>T	uc001bxb.2	-	3	1343	c.705G>A	c.(703-705)CGG>CGA	p.R235R		NM_018207	NP_060677	Q9BVG3	TRI62_HUMAN	tripartite motif-containing 62	235	Potential.					intracellular	zinc ion binding				0		Myeloproliferative disorder(586;0.0393)				TTTCAGCCAGCCGCTCCTGCA	0.692													22	29					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34038265	34038265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:34038265G>A	uc001bxn.1	-	51	7638	c.7609C>T	c.(7609-7611)CCC>TCC	p.P2537S	CSMD2_uc001bxm.1_Missense_Mutation_p.P2535S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2537	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCATTCTTGGGGGCCTCAGGA	0.488													21	48					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34182076	34182076	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:34182076G>A	uc001bxn.1	-	20	2936	c.2907C>T	c.(2905-2907)TTC>TTT	p.F969F	CSMD2_uc001bxm.1_Silent_p.F1009F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	969	Extracellular (Potential).|CUB 6.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TTTCCAGGTGGAAGGTGTGGA	0.557													6	24					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34286101	34286101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:34286101C>T	uc001bxn.1	-	8	1077	c.1048G>A	c.(1048-1050)GAA>AAA	p.E350K	CSMD2_uc001bxm.1_Missense_Mutation_p.E390K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	350	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TTGCCCCTTTCGGGTATGCCA	0.458													55	148					0	0	1	0	0
HMGB4	127540	broad.mit.edu	37	1	34330328	34330328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:34330328G>A	uc001bxp.2	+	2	2279	c.536G>A	c.(535-537)AGA>AAA	p.R179K	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_Missense_Mutation_p.R105K	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	179						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AACCGGTGCAGAGGGAAAAGA	0.453													13	33					0	0	1	0	0
GJB5	2709	broad.mit.edu	37	1	35223641	35223641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:35223641C>T	uc001bxu.2	+	2	810	c.710C>T	c.(709-711)TCC>TTC	p.S237F	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	237	Cytoplasmic (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				ACCACCTCTTCCTGCAAACAA	0.557													19	37					0	0	1	0	0
GJA4	2701	broad.mit.edu	37	1	35260571	35260571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:35260571G>A	uc001bya.2	+	2	845	c.757G>A	c.(757-759)GGC>AGC	p.G253S	GJA4_uc009vul.2_Missense_Mutation_p.G329S|GJA4_uc009vum.1_Missense_Mutation_p.G253S	NM_002060	NP_002051	P35212	CXA4_HUMAN	connexin 37	253	Cytoplasmic (Potential).				cell-cell junction assembly	integral to plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				CCCGACCCAGGGCACCTCCTC	0.652													11	26					0	0	1	0	0
C1orf216	127703	broad.mit.edu	37	1	36181741	36181741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:36181741G>A	uc001bzh.1	-	2	670	c.182C>T	c.(181-183)TCC>TTC	p.S61F		NM_152374	NP_689587	Q8TAB5	CA216_HUMAN	hypothetical protein LOC127703	61										skin(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				TGACTCAGAGGAGCTCCTCCT	0.602											OREG0013357	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	63					0	0	1	0	0
DNALI1	7802	broad.mit.edu	37	1	38025064	38025064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:38025064C>T	uc001cbj.2	+	3	440	c.430C>T	c.(430-432)CCT>TCT	p.P144S	DNALI1_uc010oie.1_Intron	NM_003462	NP_003453	O14645	IDLC_HUMAN	dynein, axonemal, light intermediate chain 1	122					cellular component movement|single fertilization	axonemal dynein complex	microtubule motor activity			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AGGCATCTGCCCTGTCCGCAG	0.592													18	31					0	0	1	0	0
DNALI1	7802	broad.mit.edu	37	1	38027169	38027169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:38027169C>T	uc001cbj.2	+	4	485	c.475C>T	c.(475-477)CGG>TGG	p.R159W	DNALI1_uc010oie.1_RNA	NM_003462	NP_003453	O14645	IDLC_HUMAN	dynein, axonemal, light intermediate chain 1	137					cellular component movement|single fertilization	axonemal dynein complex	microtubule motor activity			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGAGTTGATCCGGGAGGTCAC	0.587											OREG0013380	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	18					0	0	1	0	0
SF3A3	10946	broad.mit.edu	37	1	38453276	38453276	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:38453276A>G	uc001cci.2	-	4	396	c.272T>C	c.(271-273)ATA>ACA	p.I91T	SF3A3_uc010oik.1_Intron	NM_006802	NP_006793	Q12874	SF3A3_HUMAN	splicing factor 3a, subunit 3	91					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nuclear speck	nucleic acid binding|protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GAATTCCTTTATTTGCTTGAG	0.378													29	75					0	0	1	0	0
MPL	4352	broad.mit.edu	37	1	43805033	43805033	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:43805033C>T	uc001ciw.2	+	4	528	c.483C>T	c.(481-483)ATC>ATT	p.I161I	MPL_uc001civ.2_Silent_p.I161I|MPL_uc009vwr.2_Silent_p.I154I	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	161	Extracellular (Potential).|Fibronectin type-III 1.				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CTCCAGAAATCAGTGATTTCC	0.592			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						15	36					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47282773	47282773	+	Missense_Mutation	SNP	G	T	T	rs144321901		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:47282773G>T	uc001cqm.3	+	9	1208	c.1124G>T	c.(1123-1125)CGC>CTC	p.R375L	CYP4B1_uc001cqn.3_Missense_Mutation_p.R376L|CYP4B1_uc009vym.2_Missense_Mutation_p.R361L|CYP4B1_uc010omk.1_Missense_Mutation_p.R212L	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	375					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GAGAGCTTCCGCCTCTACCCA	0.552													30	76					3.99451e-17	4.08215e-17	1	1	0
CYP4X1	260293	broad.mit.edu	37	1	47498981	47498981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:47498981C>T	uc001cqt.2	+	4	683	c.433C>T	c.(433-435)CAT>TAT	p.H145Y	CYP4X1_uc001cqr.2_Missense_Mutation_p.H144Y|CYP4X1_uc001cqs.2_Missense_Mutation_p.H80Y	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	145						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						TCCTGGATTCCATTTTAACAT	0.453													13	34					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47504382	47504382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:47504382G>A	uc001cqt.2	+	7	1076	c.826G>A	c.(826-828)GAT>AAT	p.D276N	CYP4X1_uc001cqr.2_Missense_Mutation_p.D275N|CYP4X1_uc001cqs.2_Missense_Mutation_p.D211N	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	276						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						GGTAAAGCAGGATAACACTCC	0.393													17	35					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515764	47515764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:47515764G>A	uc001cqt.2	+	12	1698	c.1448G>A	c.(1447-1449)AGG>AAG	p.R483K	CYP4X1_uc001cqr.2_Missense_Mutation_p.R482K|CYP4X1_uc001cqs.2_Missense_Mutation_p.R418K	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	483						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						GACCCCACCAGGCCTCTTACT	0.458													43	75					0	0	1	0	0
BEND5	79656	broad.mit.edu	37	1	49208377	49208377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:49208377G>A	uc001crx.3	-	4	856	c.812C>T	c.(811-813)ACT>ATT	p.T271I	AGBL4_uc001cru.2_Intron|AGBL4_uc010omw.1_Intron|AGBL4_uc010omx.1_Intron|AGBL4_uc001crv.1_Intron|AGBL4_uc010omy.1_Intron|BEND5_uc001crw.3_Missense_Mutation_p.T102I	NM_024603	NP_078879	Q7L4P6	BEND5_HUMAN	BEN domain containing 5	271										skin(1)	1						CTCACTGAAAGTGCTCCGTAA	0.468													32	69					0	0	1	0	0
C1orf177	163747	broad.mit.edu	37	1	55272741	55272741	+	Silent	SNP	T	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:55272741T>G	uc001cyb.3	+	2	231	c.177T>G	c.(175-177)CGT>CGG	p.R59R	C1orf177_uc001cya.3_Silent_p.R59R	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	59											0						ACTCCACGCGTTATTCTACCC	0.572													63	91					0	0	1	0	0
TMEM61	199964	broad.mit.edu	37	1	55452017	55452017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:55452017C>T	uc001cyd.2	+	2	537	c.263C>T	c.(262-264)TCC>TTC	p.S88F		NM_182532	NP_872338	Q8N0U2	TMM61_HUMAN	transmembrane protein 61	88	Helical; (Potential).					integral to membrane					0						CTGCTGTGGTCCGTCAAGGCC	0.637													56	101					0	0	1	0	0
BSND	7809	broad.mit.edu	37	1	55470708	55470708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:55470708C>T	uc001cye.2	+	2	434	c.191C>T	c.(190-192)CCT>CTT	p.P64L		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	64	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						ACCTTCGTCCCTGCTGACTCT	0.582													18	38					0	0	1	0	0
C8B	732	broad.mit.edu	37	1	57415241	57415241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:57415241C>T	uc001cyp.2	-	6	918	c.851G>A	c.(850-852)CGA>CAA	p.R284Q	C8B_uc010oon.1_Missense_Mutation_p.R222Q|C8B_uc010ooo.1_Missense_Mutation_p.R232Q	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	284	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ATGAGAGAATCGTTTGGTTCT	0.254													7	24					0	0	1	0	0
SLC44A5	204962	broad.mit.edu	37	1	75672358	75672358	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:75672358G>A	uc001dgu.2	-	24	2238	c.2094C>T	c.(2092-2094)TTC>TTT	p.F698F	SLC44A5_uc001dgt.2_Intron|SLC44A5_uc001dgs.2_Intron|SLC44A5_uc001dgr.2_Intron|SLC44A5_uc010oqz.1_Intron|SLC44A5_uc010ora.1_Silent_p.F692F|SLC44A5_uc010orb.1_Silent_p.F568F	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	698	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TAGGGGTTACGAAGTAGGGTT	0.413													20	65					0	0	1	0	0
ZZZ3	26009	broad.mit.edu	37	1	78034136	78034136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:78034136G>A	uc001dhq.2	-	13	2823	c.2347C>T	c.(2347-2349)CCT>TCT	p.P783S	ZZZ3_uc001dhr.2_Missense_Mutation_p.P289S|ZZZ3_uc001dhp.2_Missense_Mutation_p.P782S	NM_015534	NP_056349	Q8IYH5	ZZZ3_HUMAN	zinc finger, ZZ-type containing 3	783					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|large_intestine(1)	5						TACATGATAGGAATACTTTCG	0.259													9	15					0	0	1	0	0
USP33	23032	broad.mit.edu	37	1	78191348	78191348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:78191348G>A	uc001dht.2	-	12	1675	c.1328C>T	c.(1327-1329)TCA>TTA	p.S443L	USP33_uc001dhs.2_Missense_Mutation_p.S164L|USP33_uc001dhu.2_Missense_Mutation_p.S412L|USP33_uc001dhv.2_Missense_Mutation_p.S248L|USP33_uc001dhw.2_Missense_Mutation_p.S443L	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	443					axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						CAAATTGCCTGATTTAGGAGG	0.408													16	27					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82431800	82431800	+	Silent	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:82431800G>T	uc001dit.3	+	11	2206	c.2025G>T	c.(2023-2025)CTG>CTT	p.L675L	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Silent_p.L675L|LPHN2_uc001div.2_Silent_p.L675L|LPHN2_uc009wcd.2_Silent_p.L675L|LPHN2_uc001diw.2_Silent_p.L259L	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	688	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AATTTCCTCTGGGCATCAAAG	0.438													18	54					1.56452e-12	1.59109e-12	1	1	0
MCOLN2	255231	broad.mit.edu	37	1	85424216	85424216	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:85424216T>A	uc001dkm.2	-	3	648	c.407A>T	c.(406-408)AAT>ATT	p.N136I	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	136						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		ACTTGCCTGATTAATAGCAAA	0.338													27	73					0	0	1	0	0
CLCA1	1179	broad.mit.edu	37	1	86965350	86965350	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:86965350C>T	uc001dlt.2	+	14	2496	c.2367C>T	c.(2365-2367)ATC>ATT	p.I789I		NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	789					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		ACAAGTATATCATTCGAATAA	0.308													15	32					0	0	1	0	0
BRDT	676	broad.mit.edu	37	1	92445279	92445279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:92445279G>A	uc001dok.3	+	8	1601	c.1252G>A	c.(1252-1254)GAG>AAG	p.E418K	BRDT_uc001dol.3_Missense_Mutation_p.E418K|BRDT_uc010osz.1_Missense_Mutation_p.E422K|BRDT_uc009wdf.2_Missense_Mutation_p.E345K|BRDT_uc010ota.1_Missense_Mutation_p.E372K|BRDT_uc010otb.1_Missense_Mutation_p.E372K|BRDT_uc001dom.3_Missense_Mutation_p.E418K	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	418	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TTCTGAAGATGAGCGAGTTAA	0.378													15	45					0	0	1	0	0
BTBD8	284697	broad.mit.edu	37	1	92568184	92568184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:92568184C>T	uc001doo.2	+	3	769	c.502C>T	c.(502-504)CCA>TCA	p.P168S	BTBD8_uc010otc.1_RNA	NM_183242	NP_899065	Q5XKL5	BTBD8_HUMAN	BTB (POZ) domain containing 8	168						nucleus				ovary(1)	1		all_lung(203;0.0484)|Lung NSC(277;0.126)|Glioma(108;0.222)		all cancers(265;0.0153)|Epithelial(280;0.0982)		GCATGAAATTCCAGAGGATAT	0.328													17	28					0	0	1	0	0
RPL5	6125	broad.mit.edu	37	1	93301928	93301928	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:93301928G>T	uc001doz.2	+	5	584	c.506G>T	c.(505-507)GGA>GTA	p.G169V	FAM69A_uc001dpc.2_Intron|RPL5_uc001dpa.2_RNA|RPL5_uc001dpb.2_Missense_Mutation_p.G119V|RPL5_uc001dpd.2_5'UTR|SNORD21_uc001dpe.2_5'Flank	NM_000969	NP_000960	P46777	RL5_HUMAN	ribosomal protein L5	169					endocrine pancreas development|ribosomal large subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	5S rRNA binding|protein binding|structural constituent of ribosome				0		all_lung(203;0.00265)|Lung NSC(277;0.0056)|all_neural(321;0.185)|Melanoma(281;0.192)|Glioma(108;0.203)		GBM - Glioblastoma multiforme(16;0.000305)|all cancers(265;0.000343)|Epithelial(280;0.0927)		GCTGTGGATGGAGGCTTGTCT	0.493													24	58					7.07758e-08	7.15266e-08	1	1	0
NTNG1	22854	broad.mit.edu	37	1	107691441	107691441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:107691441C>T	uc001dvh.3	+	2	944	c.226C>T	c.(226-228)CCT>TCT	p.P76S	NTNG1_uc001dvf.3_Missense_Mutation_p.P76S|NTNG1_uc010out.1_Missense_Mutation_p.P76S|NTNG1_uc001dvc.3_Missense_Mutation_p.P76S|NTNG1_uc001dvd.1_Missense_Mutation_p.P76S	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	76	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		TGGAGACCCTCCTGAGACGTT	0.438													22	59					0	0	1	0	0
ST7L	54879	broad.mit.edu	37	1	113153619	113153619	+	Nonsense_Mutation	SNP	C	A	A	rs140260708	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:113153619C>A	uc001ecd.2	-	3	600	c.295G>T	c.(295-297)GAA>TAA	p.E99*	ST7L_uc009wgh.2_RNA|ST7L_uc001ecc.2_5'UTR|ST7L_uc010owg.1_Nonsense_Mutation_p.E99*|ST7L_uc010owh.1_Nonsense_Mutation_p.E99*|ST7L_uc001ece.2_Nonsense_Mutation_p.E99*|ST7L_uc001ecf.2_Nonsense_Mutation_p.E82*|ST7L_uc001ecg.2_RNA|ST7L_uc010owi.1_Nonsense_Mutation_p.E34*|ST7L_uc001ech.2_Nonsense_Mutation_p.E82*|ST7L_uc001eci.2_Nonsense_Mutation_p.E99*|ST7L_uc009wgi.1_RNA|ST7L_uc010owj.1_Nonsense_Mutation_p.E82*	NM_017744	NP_060214	Q8TDW4	ST7L_HUMAN	suppression of tumorigenicity 7-like isoform 1	99	Helical; (Potential).				negative regulation of cell growth	integral to membrane	binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACCACCATTCAAATATCTAT	0.383													13	19					3.27435e-08	3.31388e-08	1	1	0
DCLRE1B	64858	broad.mit.edu	37	1	114454215	114454215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:114454215C>T	uc001eeg.2	+	4	1172	c.1001C>T	c.(1000-1002)CCA>CTA	p.P334L	DCLRE1B_uc001eeh.2_Missense_Mutation_p.P208L|DCLRE1B_uc001eei.2_Missense_Mutation_p.P208L	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	334					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCTAGAAAACCAAGCCTTCTC	0.522								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					18	42					0	0	1	0	0
HSD3B2	3284	broad.mit.edu	37	1	119964988	119964988	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:119964988C>T	uc001ehs.2	+	3	1637	c.864C>T	c.(862-864)ACC>ACT	p.T288T	HSD3B2_uc001eht.2_Silent_p.T288T|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	288	Helical; (Potential).				androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	TTCCTTTAACCCTGATGTACT	0.478													31	76					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144865923	144865923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:144865923G>A	uc001elw.3	-	35	5948	c.5657C>T	c.(5656-5658)ACT>ATT	p.T1886I	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.T1780I|PDE4DIP_uc001elv.3_Missense_Mutation_p.T893I|PDE4DIP_uc001ema.2_Missense_Mutation_p.T73I	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1886	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GAAGTTAGAAGTGGATCCTGT	0.463			T	PDGFRB	MPD								86	341					0	0	1	0	0
OTUD7B	56957	broad.mit.edu	37	1	149942998	149942998	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:149942998G>A	uc001etn.2	-	3	623	c.267C>T	c.(265-267)ATC>ATT	p.I89I	OTUD7B_uc001eto.2_Missense_Mutation_p.S55L	NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	89					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			TACCTTGAACGATGTCATCCT	0.522													56	63					0	0	1	0	0
PLEKHO1	51177	broad.mit.edu	37	1	150129122	150129122	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:150129122C>T	uc001ett.2	+	4	614	c.336C>T	c.(334-336)TTC>TTT	p.F112F	PLEKHO1_uc001etr.2_5'UTR|PLEKHO1_uc001ets.2_5'UTR|PLEKHO1_uc001etu.2_5'UTR	NM_016274	NP_057358	Q53GL0	PKHO1_HUMAN	pleckstrin homology domain containing, family O	112	PH.					cytoplasm|nucleus|plasma membrane				lung(1)	1	Lung NSC(24;7.78e-28)|Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			ACCTGATCTTCCTGGCAGTGA	0.502													35	82					0	0	1	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150526424	150526424	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:150526424G>A	uc001eux.2	+	6	1193	c.957G>A	c.(955-957)ACG>ACA	p.T319T	ADAMTSL4_uc001euw.2_Silent_p.T319T|ADAMTSL4_uc009wlw.2_Silent_p.T319T|ADAMTSL4_uc010pcg.1_Silent_p.T319T	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	319					apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CTTGGGGAACGGGGGGGACTC	0.721													12	16					0	0	1	0	0
TDRKH	11022	broad.mit.edu	37	1	151754020	151754020	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:151754020C>T	uc009wnb.1	-	3	350	c.168G>A	c.(166-168)GAG>GAA	p.E56E	TDRKH_uc001eyy.2_5'UTR|TDRKH_uc001ezb.3_Silent_p.E56E|TDRKH_uc001ezc.3_Silent_p.E56E|TDRKH_uc001eza.3_Silent_p.E56E|TDRKH_uc001ezd.3_Silent_p.E56E|TDRKH_uc010pdn.1_5'UTR	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	56	KH 1.						RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GAACCCGCATCTCTATCTCAA	0.463													22	114					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059011	152059011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:152059011C>T	uc001ezo.1	-	3	1212	c.1147G>A	c.(1147-1149)GAA>AAA	p.E383K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	383							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TCAGATGTTTCTGAACCATTT	0.463													212	132					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152185640	152185640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:152185640C>T	uc001ezt.1	-	3	8541	c.8465G>A	c.(8464-8466)GGA>GAA	p.G2822E		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2822					keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCAGAACTTCCCCCATCATG	0.438													106	78					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152283121	152283121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:152283121C>T	uc001ezu.1	-	3	4277	c.4241G>A	c.(4240-4242)GGA>GAA	p.G1414E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1414	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCAGCTTGTCCGTGGGCTGA	0.567									Ichthyosis				104	433					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152286641	152286641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:152286641C>T	uc001ezu.1	-	3	757	c.721G>A	c.(721-723)GAT>AAT	p.D241N	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	241					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TAGGCTTCATCCTGGATTGTG	0.353									Ichthyosis				85	88					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152325163	152325163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:152325163C>T	uc001ezw.3	-	3	5172	c.5099G>A	c.(5098-5100)GGA>GAA	p.G1700E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1700							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGGTATCTCCTGTCTGTCC	0.488													261	203					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152325811	152325811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:152325811C>T	uc001ezw.3	-	3	4524	c.4451G>A	c.(4450-4452)GGA>GAA	p.G1484E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1484	Filaggrin 5.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTGGATTTTCCATGATGATA	0.517													340	294					0	0	1	0	0
S100A8	6279	broad.mit.edu	37	1	153362584	153362584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:153362584C>T	uc001fbs.2	-	3	332	c.277G>A	c.(277-279)GAG>AAG	p.E93K		NM_002964	NP_002955	P05109	S10A8_HUMAN	S100 calcium-binding protein A8	93				VAAHKKSHEESHKE -> WQPTKKAMKKATKSS (in Ref. 1; CAA68390).	chemotaxis	cytoplasm|cytoskeleton|plasma membrane	calcium ion binding|protein binding				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTCAGCTACTCTTTGTGGCTT	0.473													29	174					0	0	1	0	0
KCNN3	3782	broad.mit.edu	37	1	154841945	154841945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:154841945C>T	uc001ffp.2	-	1	810	c.496G>A	c.(496-498)GAC>AAC	p.D166N	KCNN3_uc009wox.1_Missense_Mutation_p.D166N	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	171						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GGGTTGCTGTCCCGCCGGTGC	0.647													10	108					0	0	1	0	0
PYGO2	90780	broad.mit.edu	37	1	154931902	154931902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:154931902G>A	uc001fft.2	-	3	780	c.574C>T	c.(574-576)CCC>TCC	p.P192S		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	192	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GAGATCATGGGACCAAATCCC	0.587													23	112					0	0	1	0	0
CLK2	1196	broad.mit.edu	37	1	155233150	155233150	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:155233150G>A	uc001fjy.2	-	13	1649	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F	RAG1AP1_uc010pey.1_Intron|SCAMP3_uc001fjr.2_5'Flank|SCAMP3_uc001fjs.2_5'Flank|SCAMP3_uc001fju.2_5'Flank|SCAMP3_uc001fjv.2_5'Flank|SCAMP3_uc001fjt.2_5'Flank|CLK2_uc001fjw.2_Silent_p.F452F|CLK2_uc001fjx.2_Silent_p.F225F|CLK2_uc009wqm.2_Silent_p.F453F	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	453	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CAATCAGATCGAAGAGCTGGT	0.562								Other_conserved_DNA_damage_response_genes					72	33					0	0	1	0	0
LMNA	4000	broad.mit.edu	37	1	156105716	156105716	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:156105716C>T	uc001fni.2	+	6	1210	c.961C>T	c.(961-963)CGA>TGA	p.R321*	LMNA_uc001fnf.1_Nonsense_Mutation_p.R321*|LMNA_uc001fng.2_Nonsense_Mutation_p.R321*|LMNA_uc001fnh.2_Nonsense_Mutation_p.R321*|LMNA_uc009wro.1_Nonsense_Mutation_p.R321*|LMNA_uc010pgz.1_Nonsense_Mutation_p.R209*|LMNA_uc001fnj.2_Nonsense_Mutation_p.R240*|LMNA_uc001fnk.2_Nonsense_Mutation_p.R222*|LMNA_uc009wrp.2_Silent_p.F48F|LMNA_uc010pha.1_5'UTR	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	321	Coil 2.|Rod.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					GGCGAAGCTTCGAGACCTGGA	0.657									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				66	307					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156823895	156823895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:156823895C>T	uc010pht.1	-	2	540	c.286G>A	c.(286-288)GAC>AAC	p.D96N	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Missense_Mutation_p.D96N	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	96					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGGAAGAGGTCGCGCAGGCTC	0.637													17	74					0	0	1	0	0
NTRK1	4914	broad.mit.edu	37	1	156845906	156845906	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:156845906C>T	uc001fqh.1	+	13	1592	c.1536C>T	c.(1534-1536)CTC>CTT	p.L512L	NTRK1_uc001fqf.1_Silent_p.L476L|NTRK1_uc009wsi.1_Silent_p.L211L|NTRK1_uc001fqi.1_Silent_p.L506L|NTRK1_uc009wsk.1_Silent_p.L509L	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	512	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	ACATCGTGCTCAAGTGGGAGC	0.622			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			119	81					0	0	1	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156939110	156939110	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:156939110C>T	uc001fqo.2	-	9	1709	c.669G>A	c.(667-669)TTG>TTA	p.L223L	ARHGEF11_uc001fqn.2_Silent_p.L263L	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	223					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TCCCAGAGTCCAAGCCACTGT	0.562													5	20					0	0	1	0	0
CD1A	909	broad.mit.edu	37	1	158224966	158224966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:158224966G>A	uc001frt.2	+	2	684	c.151G>A	c.(151-153)GAT>AAT	p.D51N		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	51	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	TTGGCTGAGTGATTTGCAGAC	0.517													21	33					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158636129	158636129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:158636129C>T	uc001fst.1	-	16	2396	c.2197G>A	c.(2197-2199)GAG>AAG	p.E733K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	733	Spectrin 8.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ACAGCCGACTCCAGGAGGCCG	0.522													10	12					0	0	1	0	0
FCER1A	2205	broad.mit.edu	37	1	159273776	159273776	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:159273776G>A	uc001ftq.2	+	4	234	c.135G>A	c.(133-135)GAG>GAA	p.E45E		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	45	Extracellular (Potential).|Ig-like 1.					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	TTAAAGGAGAGAATGTGACTC	0.368													48	34					0	0	1	0	0
APCS	325	broad.mit.edu	37	1	159557927	159557927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:159557927C>T	uc001ftv.2	+	2	197	c.101C>T	c.(100-102)TCT>TTT	p.S34F		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	34	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					CCTAGAGAATCTGTTACTGAT	0.423													98	77					0	0	1	0	0
DCAF8	50717	broad.mit.edu	37	1	160194883	160194883	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:160194883G>A	uc001fvo.2	-	9	1482	c.1170C>T	c.(1168-1170)ATC>ATT	p.I390I	DCAF8_uc001fvn.2_Silent_p.I390I|DCAF8_uc009wth.2_Silent_p.I390I|DCAF8_uc010pjb.1_Silent_p.I390I|DCAF8_uc010pjc.1_Silent_p.I544I	NM_015726	NP_056541	Q5TAQ9	DCAF8_HUMAN	DDB1 and CUL4 associated factor 8	390	WD 5.					CUL4 RING ubiquitin ligase complex	protein binding			skin(2)	2						CAAGACAGGTGATGTTTGCTT	0.547													15	76					0	0	1	0	0
NDUFS2	4720	broad.mit.edu	37	1	161179046	161179046	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:161179046C>A	uc001fyv.2	+	5	905	c.457C>A	c.(457-459)CTA>ATA	p.L153I	NDUFS2_uc010pki.1_Missense_Mutation_p.L55I|NDUFS2_uc001fyw.2_Missense_Mutation_p.L153I|NDUFS2_uc010pkj.1_Missense_Mutation_p.L102I|NDUFS2_uc001fyx.2_Missense_Mutation_p.L153I|NDUFS2_uc001fyy.1_3'UTR	NM_004550	NP_004541	O75306	NDUS2_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 2	153					mitochondrial electron transport, NADH to ubiquinone|response to oxidative stress|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|NAD binding|NADH dehydrogenase (ubiquinone) activity|protein binding|quinone binding			skin(1)	1	all_cancers(52;1.16e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		NADH(DB00157)	GGCCTATTCTCTAGCTGTGGA	0.532											OREG0013941	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	46					2.98393e-07	3.00978e-07	1	1	0
DUSP27	92235	broad.mit.edu	37	1	167097243	167097243	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:167097243A>G	uc001geb.1	+	5	2875	c.2875A>G	c.(2875-2877)AGA>GGA	p.R959G		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	959	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TGGAAGTTCCAGAGGGAAGTA	0.493													25	23					0	0	1	0	0
TBX19	9095	broad.mit.edu	37	1	168282176	168282176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:168282176C>T	uc001gfl.2	+	8	1334	c.1283C>T	c.(1282-1284)CCC>CTC	p.P428L	TBX19_uc001gfj.3_Missense_Mutation_p.P296L|TBX19_uc001gfm.2_Missense_Mutation_p.P131L	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	428					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					GCCTCGCATCCCTTCGCGGGC	0.622													17	49					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175375367	175375367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:175375367C>T	uc001gkp.1	-	1	565	c.484G>A	c.(484-486)GAA>AAA	p.E162K	TNR_uc009wwu.1_Missense_Mutation_p.E162K|TNR_uc010pmz.1_Missense_Mutation_p.E162K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	162	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GCAGCACTTTCTTGGCAGCAG	0.612													25	33					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181764100	181764100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:181764100G>A	uc001gow.2	+	45	6164	c.5999G>A	c.(5998-6000)AGT>AAT	p.S2000N	CACNA1E_uc009wxs.2_Missense_Mutation_p.S1888N|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1269N	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2043	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GAGCGAAGCAGTGAAAATACC	0.527													13	62					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181767606	181767606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:181767606C>T	uc001gow.2	+	47	6614	c.6449C>T	c.(6448-6450)TCC>TTC	p.S2150F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S2038F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1419F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2193	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GAGGAGGGCTCCCCGCTGACC	0.647													37	62					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181767737	181767737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:181767737G>A	uc001gow.2	+	47	6745	c.6580G>A	c.(6580-6582)GAA>AAA	p.E2194K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E2082K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E1463K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2237	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GGCCCTGCACGAAGACTCCCA	0.622													17	24					0	0	1	0	0
RNASEL	6041	broad.mit.edu	37	1	182555226	182555227	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:182555226_182555227CC>TG	uc001gpj.1	-	1	882_883	c.715_716GG>CA	c.(715-717)GGG>CAG	p.G239Q	RNASEL_uc009wxz.1_Missense_Mutation_p.G239Q|RNASEL_uc001gpk.2_Missense_Mutation_p.G239Q|RNASEL_uc009wya.1_Missense_Mutation_p.G239Q	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	239	2-5A binding (P-loop) 1.|ANK 7.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						GGGAGTCTTCCCTCTTTCTCCC	0.515									Hereditary_Prostate_Cancer				25	42					0	0	1	0	0
RNASEL	6041	broad.mit.edu	37	1	182555381	182555381	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:182555381G>A	uc001gpj.1	-	1	728	c.561C>T	c.(559-561)CTC>CTT	p.L187L	RNASEL_uc009wxz.1_Silent_p.L187L|RNASEL_uc001gpk.2_Silent_p.L187L|RNASEL_uc009wya.1_Silent_p.L187L	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	187	ANK 5.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						TCTCATCAAGGAGAATCTTCA	0.517									Hereditary_Prostate_Cancer				22	49					0	0	1	0	0
NPL	80896	broad.mit.edu	37	1	182787806	182787806	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:182787806C>T	uc009wyb.2	+	9	728	c.588C>T	c.(586-588)TTC>TTT	p.F196F	NPL_uc010pnx.1_Silent_p.F177F|NPL_uc010pny.1_Intron|NPL_uc001gpo.1_Silent_p.F177F|NPL_uc009wyc.2_Silent_p.F196F|NPL_uc001gpp.3_Silent_p.F196F|NPL_uc001gpq.1_Silent_p.F196F	NM_030769	NP_110396	Q9BXD5	NPL_HUMAN	N-acetylneuraminate pyruvate lyase	196					carbohydrate metabolic process	cytoplasm	N-acetylneuraminate lyase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGTTTGCTTTCCTTTTTGGGG	0.453													16	27					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186089163	186089163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:186089163C>T	uc001grq.1	+	80	12344	c.12115C>T	c.(12115-12117)CCT>TCT	p.P4039S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4039	Ig-like C2-type 39.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGCAGTTCTTCCTAGTGGCGG	0.453													28	26					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190067969	190067969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:190067969C>T	uc001gse.1	-	8	1712	c.1480G>A	c.(1480-1482)GAT>AAT	p.D494N	FAM5C_uc010pot.1_Missense_Mutation_p.D392N	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	494						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					ATCTCGAGATCTTGCAGGTCA	0.502													48	74					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390638	197390638	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:197390638C>T	uc001gtz.2	+	6	1815	c.1680C>T	c.(1678-1680)CAC>CAT	p.H560H	CRB1_uc010poz.1_Silent_p.H491H|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.H448H|CRB1_uc010ppb.1_Silent_p.H560H|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.H41H|CRB1_uc001gub.1_Silent_p.H209H	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	560	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TCATTTCCCACAACACCAGCG	0.463													30	45					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200969668	200969668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:200969668C>T	uc001gvs.1	-	11	1852	c.1535G>A	c.(1534-1536)AGG>AAG	p.R512K	KIF21B_uc001gvr.1_Missense_Mutation_p.R512K|KIF21B_uc009wzl.1_Missense_Mutation_p.R512K|KIF21B_uc010ppn.1_Missense_Mutation_p.R512K	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	512	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GTAGGGGCTCCTAGCCGAGGC	0.667													23	115					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200972904	200972904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:200972904G>A	uc001gvs.1	-	8	1339	c.1022C>T	c.(1021-1023)ACC>ATC	p.T341I	KIF21B_uc001gvr.1_Missense_Mutation_p.T341I|KIF21B_uc009wzl.1_Missense_Mutation_p.T341I|KIF21B_uc010ppn.1_Missense_Mutation_p.T341I|KIF21B_uc001gvt.1_Missense_Mutation_p.T199I	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	341					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GATCATGATGGTCTGGCTGGG	0.572													66	36					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201354881	201354881	+	Missense_Mutation	SNP	C	T	T	rs143101113		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:201354881C>T	uc001gwm.2	-	4	1314	c.1079G>A	c.(1078-1080)CGA>CAA	p.R360Q	LAD1_uc009wzu.1_Missense_Mutation_p.R382Q	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	360						basement membrane	structural molecule activity				0						GCTGTAGGTTCGCTGTGTGGG	0.537											OREG0014078	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	146	112					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201356024	201356024	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:201356024G>A	uc001gwm.2	-	3	700	c.465C>T	c.(463-465)GCC>GCT	p.A155A	LAD1_uc009wzu.1_Silent_p.A177A	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	155						basement membrane	structural molecule activity				0						CCTCCTCCAGGGCCCAGGGGC	0.592													33	168					0	0	1	0	0
LMOD1	25802	broad.mit.edu	37	1	201868629	201868629	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:201868629C>T	uc001gxb.2	-	2	1760	c.1512G>A	c.(1510-1512)GTG>GTA	p.V504V	LMOD1_uc010ppu.1_Silent_p.V453V	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	504					muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						AGCCCTTAGCCACGGCCCCGG	0.592													19	53					0	0	1	0	0
PPFIA4	8497	broad.mit.edu	37	1	203015021	203015021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:203015021G>A	uc009xaj.2	+	12	1352	c.1352G>A	c.(1351-1353)CGC>CAC	p.R451H	PPFIA4_uc010pqf.1_Missense_Mutation_p.R11H			O75335	LIPA4_HUMAN	SubName: Full=Liprin alpha4;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell communication	cell surface|cytoplasm	protein binding	p.R451P(1)		ovary(4)|skin(1)	5						CTGGAGAAGCGCTACCTGGCT	0.572													12	223					0	0	1	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204399119	204399119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:204399119G>A	uc001haw.2	-	30	4807	c.4328C>T	c.(4327-4329)GCC>GTC	p.A1443V	PIK3C2B_uc010pqv.1_Missense_Mutation_p.A1415V	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1443	PX.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			CCGCCGCTCGGCCACCGCCTC	0.657													80	24					0	0	1	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204433169	204433169	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:204433169C>T	uc001haw.2	-	6	1760	c.1281G>A	c.(1279-1281)AAG>AAA	p.K427K	PIK3C2B_uc010pqv.1_Silent_p.K427K|PIK3C2B_uc001hax.1_Silent_p.K427K|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	427					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GCCCGCAGGGCTTTAGCACAA	0.547													38	206					0	0	1	0	0
TMCC2	9911	broad.mit.edu	37	1	205238736	205238736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:205238736C>T	uc001hbz.1	+	4	1850	c.1406C>T	c.(1405-1407)TCC>TTC	p.S469F	TMCC2_uc010prf.1_Missense_Mutation_p.S391F|TMCC2_uc001hca.2_Missense_Mutation_p.S244F|TMCC2_uc001hcb.1_Missense_Mutation_p.S229F|TMCC2_uc001hcc.1_Missense_Mutation_p.S90F|TMCC2_uc001hcd.2_Missense_Mutation_p.S236F	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	469						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			ACACTCGTCTCCAGCCCCAAG	0.682													24	94					0	0	1	0	0
RAB7L1	8934	broad.mit.edu	37	1	205739572	205739572	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:205739572A>G	uc001hdf.3	-	6	850	c.510T>C	c.(508-510)ATT>ATC	p.I170I	RAB7L1_uc009xbp.2_Silent_p.I98I|RAB7L1_uc001hde.3_Silent_p.I170I|RAB7L1_uc010prr.1_Silent_p.I146I|RAB7L1_uc009xbq.2_RNA	NM_003929	NP_003920	O14966	RAB7L_HUMAN	RAB7, member RAS oncogene family-like 1 isoform	170					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)	1	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			TCATCTTTTCAATGAGGACTC	0.408													9	12					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205884511	205884511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:205884511G>A	uc001hdq.2	-	21	2464	c.2350C>T	c.(2350-2352)CAC>TAC	p.H784Y	SLC26A9_uc001hdm.2_5'UTR|SLC26A9_uc001hdn.2_5'UTR|SLC26A9_uc001hdo.2_Missense_Mutation_p.H452Y|SLC26A9_uc001hdp.2_Missense_Mutation_p.H784Y	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	784						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			GTCTCTGCGTGAAACATGCTC	0.582													60	92					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205890904	205890904	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:205890904G>A	uc001hdq.2	-	17	1959	c.1845C>T	c.(1843-1845)ACC>ACT	p.T615T	SLC26A9_uc001hdo.2_Silent_p.T283T|SLC26A9_uc001hdp.2_Silent_p.T615T	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	615	STAS.					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			CGTTAGCCGGGGTCTGGTTGT	0.647													3	9					0	0	1	0	0
FAM72A	729533	broad.mit.edu	37	1	206145485	206145485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:206145485C>T	uc001hdr.3	+	3	656	c.262C>T	c.(262-264)CCA>TCA	p.P88S		NM_001123168	NP_001116640	Q5TYM5	FA72A_HUMAN	hypothetical protein LOC729533	88											0						TGTGATTGTTCCATGTAGTTC	0.373													139	150					0	0	1	0	0
AVPR1B	553	broad.mit.edu	37	1	206230971	206230971	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:206230971C>T	uc001hds.2	+	2	1262	c.1104C>T	c.(1102-1104)TCC>TCT	p.S368S		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	368	Cytoplasmic (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	GGCGGCTCTCCGACGGCAGCC	0.697													16	13					0	0	1	0	0
RASSF5	83593	broad.mit.edu	37	1	206711563	206711563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:206711563G>A	uc001hed.2	+	2	577	c.520G>A	c.(520-522)GAG>AAG	p.E174K	RASSF5_uc001hec.1_Missense_Mutation_p.E174K|RASSF5_uc001hee.2_Missense_Mutation_p.E174K	NM_182663	NP_872604	Q8WWW0	RASF5_HUMAN	Ras association (RalGDS/AF-6) domain family 5	174					apoptosis|intracellular signal transduction	cytoplasm|microtubule	metal ion binding|protein binding			ovary(1)	1	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			CAGTCAGCAGGAGGGTTTATC	0.547													39	229					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207643227	207643227	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:207643227G>A	uc001hfw.2	+	6	1099	c.1005G>A	c.(1003-1005)TGG>TGA	p.W335*	CR2_uc001hfv.2_Nonsense_Mutation_p.W335*|CR2_uc009xch.2_Nonsense_Mutation_p.W335*|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	335	Sushi 5.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CTGGGACCTGGAGTGGCCCTG	0.522													14	34					0	0	1	0	0
CR1L	1379	broad.mit.edu	37	1	207890829	207890829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:207890829C>T	uc001hga.3	+	11	1556	c.1435C>T	c.(1435-1437)CCA>TCA	p.P479S	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	479	Sushi 8.					cytoplasm|extracellular region|membrane					0						TCCAAATCCTCCAGCTATCCT	0.413													33	89					0	0	1	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209933640	209933640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:209933640G>A	uc001hho.2	+	3	546	c.256G>A	c.(256-258)GAG>AAG	p.E86K	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.E86K|TRAF3IP3_uc001hhm.1_Missense_Mutation_p.E86K|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.E86K|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.E86K	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	86	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		CCAGGCCAGGGAGCAAGGGCC	0.602													14	20					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216348792	216348792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:216348792C>T	uc001hku.1	-	21	4816	c.4429G>A	c.(4429-4431)GGA>AGA	p.G1477R	USH2A_uc001hkv.2_Missense_Mutation_p.G1477R	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1477	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTGTTGATTCCTTTAACCAGA	0.413										HNSCC(13;0.011)			11	28					0	0	1	0	0
EPRS	2058	broad.mit.edu	37	1	220192405	220192405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:220192405G>A	uc001hly.1	-	11	1636	c.1366C>T	c.(1366-1368)CCT>TCT	p.P456S	EPRS_uc010puf.1_Missense_Mutation_p.P207S|EPRS_uc001hlz.1_Missense_Mutation_p.P456S|EPRS_uc009xdt.1_Missense_Mutation_p.P179S	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	456	Glutamyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	CGAACCGTAGGAAATCTTGGG	0.378													23	50					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222713617	222713617	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:222713617G>A	uc001hnh.1	-	4	1243	c.1185C>T	c.(1183-1185)TAC>TAT	p.Y395Y		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	395					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		AGGGGACTCGGTACCGCTTGC	0.537													456	283					0	0	1	0	0
C1orf65	164127	broad.mit.edu	37	1	223568625	223568625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:223568625G>A	uc001hoa.2	+	1	1911	c.1808G>A	c.(1807-1809)AGC>AAC	p.S603N		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	603										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		CCTCCCAACAGCTCCCTTGAT	0.582													11	67					0	0	1	0	0
ITPKB	3707	broad.mit.edu	37	1	226835002	226835002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:226835002C>T	uc010pvo.1	-	4	2452	c.2112G>A	c.(2110-2112)ATG>ATA	p.M704I		NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	704							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				GCACATCCACCATCAGCCGGT	0.592													11	22					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228451914	228451914	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:228451914C>T	uc009xez.1	+	16	4727	c.4683C>T	c.(4681-4683)GCC>GCT	p.A1561A	OBSCN_uc001hsn.2_Silent_p.A1561A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1561	Ig-like 16.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGGCCCAGGCCCAGACAGAGG	0.657													38	67					0	0	1	0	0
ACTA1	58	broad.mit.edu	37	1	229568806	229568806	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:229568806C>T	uc001htm.2	-	2	162	c.57G>A	c.(55-57)GTG>GTA	p.V19V		NM_001100	NP_001091	P68133	ACTS_HUMAN	actin, alpha 1, skeletal muscle	19					muscle filament sliding|skeletal muscle fiber development|skeletal muscle thin filament assembly	actin filament|cytosol|stress fiber|striated muscle thin filament	ADP binding|ATP binding|myosin binding|structural constituent of cytoskeleton				0	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.167)			Dornase Alfa(DB00003)	AGCCGGCTTTCACCAGGCCGG	0.677													22	95					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394138	233394138	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:233394138C>T	uc001hvl.2	-	5	1705	c.1470G>A	c.(1468-1470)TGG>TGA	p.W490*	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	490						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ACACCGATTCCCAGGGTTCCC	0.547													42	41					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233489572	233489572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:233489572G>A	uc001hvt.3	+	3	1267	c.1006G>A	c.(1006-1008)GAA>AAA	p.E336K	KIAA1804_uc001hvs.1_Missense_Mutation_p.E336K	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	336	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GCTGCTGTGGGAACTGCTCAC	0.488													57	47					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233518443	233518443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:233518443G>A	uc001hvt.3	+	10	3358	c.3097G>A	c.(3097-3099)GAA>AAA	p.E1033K	KIAA1804_uc001hvu.3_Missense_Mutation_p.E479K	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	1033					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				ACTGGAGAAAGAATTCCTGTC	0.423													26	19					0	0	1	0	0
KCNK1	3775	broad.mit.edu	37	1	233807252	233807252	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:233807252C>T	uc010pxo.1	+	3	1155	c.987C>T	c.(985-987)TGC>TGT	p.C329C	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	329	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	CATCTGCCTGCGTGGATGGCC	0.498													18	86					0	0	1	0	0
LYST	1130	broad.mit.edu	37	1	235972340	235972340	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:235972340A>G	uc001hxj.2	-	5	1953	c.1778T>C	c.(1777-1779)ATT>ACT	p.I593T	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.I593T	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	593					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GAGCAAAGGAATGATTACAGA	0.388									Chediak-Higashi_syndrome				25	78					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240256751	240256751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:240256751G>A	uc010pyd.1	+	1	1567	c.1342G>A	c.(1342-1344)GAA>AAA	p.E448K	FMN2_uc010pye.1_Missense_Mutation_p.E448K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	448					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GAGGCGGCCGGAACCCTCCCT	0.697													22	66					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370999	240370999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:240370999G>A	uc010pyd.1	+	5	3112	c.2887G>A	c.(2887-2889)GGC>AGC	p.G963S	FMN2_uc010pye.1_Missense_Mutation_p.G967S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	963	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TCCCGGGGCAGGCATACCCCT	0.697													10	29					0	0	1	0	0
RGS7	6000	broad.mit.edu	37	1	241099902	241099902	+	Nonsense_Mutation	SNP	G	A	A	rs138071681		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:241099902G>A	uc001hyv.2	-	5	661	c.331C>T	c.(331-333)CAA>TAA	p.Q111*	RGS7_uc010pyh.1_Nonsense_Mutation_p.Q85*|RGS7_uc010pyj.1_Nonsense_Mutation_p.Q27*|RGS7_uc001hyu.2_Nonsense_Mutation_p.Q111*|RGS7_uc009xgn.1_Intron|RGS7_uc001hyw.2_Nonsense_Mutation_p.Q111*	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	111	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			AAACTTACTTGAAACCGGTAA	0.393													28	61					0	0	1	0	0
ZNF238	10472	broad.mit.edu	37	1	244217611	244217611	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:244217611C>T	uc001iae.2	+	1	1030	c.508C>T	c.(508-510)CTG>TTG	p.L170L	ZNF238_uc001iad.3_Silent_p.L179L|ZNF238_uc001iaf.1_Silent_p.L170L	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	170				KLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHAT AAGKTVASPCSSTESLSQRSVTSVRDSADVDCVLDLSVKSS LSGVENLNSSYFSSQ -> IEHPAQQKGLGGRAWEHVDAIA LRLSRHPPGWRRGRATRHSSWKNSSQPLQLNRVFVPE (in Ref. 1; AAA81368).	negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			ATTGAACATCCTGCCCAGCAA	0.562													15	90					0	0	1	0	0
KIF26B	55083	broad.mit.edu	37	1	245850315	245850316	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:245850315_245850316TC>AT	uc001ibf.1	+	12	4470_4471	c.4030_4031TC>AT	c.(4030-4032)TCT>ATT	p.S1344I	KIF26B_uc001ibg.1_Missense_Mutation_p.S962I|KIF26B_uc001ibh.1_Missense_Mutation_p.S586I	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1344					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GCTCATCCTGTCTGAGATGGGA	0.554													42	14					0	0	1	0	0
OR2G3	81469	broad.mit.edu	37	1	247769028	247769028	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:247769028C>T	uc010pyz.1	+	1	141	c.141C>T	c.(139-141)ATC>ATT	p.I47I		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CCATAATCATCATCTCATATC	0.458													66	213					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247875979	247875979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:247875979G>A	uc001idj.1	-	1	79	c.79C>T	c.(79-81)CTC>TTC	p.L27F		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			AGCATAAAGAGAGAGAGCTGA	0.458													42	155					0	0	1	0	0
OR14A16	284532	broad.mit.edu	37	1	247978971	247978971	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:247978971T>C	uc001idm.1	-	1	61	c.61A>G	c.(61-63)ATG>GTG	p.M21V		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAAATGCACATATTTTTATTG	0.383													10	34					0	0	1	0	0
OR2M5	127059	broad.mit.edu	37	1	248308623	248308623	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:248308623C>T	uc010pze.1	+	1	174	c.174C>T	c.(172-174)CCC>CCT	p.P58P		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			TCCACACCCCCATGTACTTCC	0.522													177	210					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616209	248616210	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:248616209_248616210GG>AA	uc001iek.1	+	1	111_112	c.111_112GG>AA	c.(109-114)GTGGTG>GTAATG	p.V38M		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCATCTTTGTGGTGGCTATAAC	0.525													35	211					0	0	1	0	0
OR2T10	127069	broad.mit.edu	37	1	248756757	248756757	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:248756757G>A	uc010pzn.1	-	1	313	c.313C>T	c.(313-315)CTG>TTG	p.L105L		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCCAACTGCAGGTAGAAGTAC	0.537													14	11					0	0	1	0	0
DIP2C	22982	broad.mit.edu	37	10	395384	395384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:395384G>A	uc001ifp.2	-	25	3086	c.2996C>T	c.(2995-2997)GCG>GTG	p.A999V	DIP2C_uc009xhi.1_Missense_Mutation_p.A385V	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	999						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CAGCGAGTTCGCTATCGCACC	0.532													23	42					0	0	1	0	0
ADARB2	105	broad.mit.edu	37	10	1279772	1279772	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:1279772G>A	uc009xhq.2	-	6	1751	c.1377C>T	c.(1375-1377)GAC>GAT	p.D459D		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	459	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		ATCGCTCTGAGTCCTCGCGCC	0.522													17	37					0	0	1	0	0
AKR1C3	8644	broad.mit.edu	37	10	5141520	5141520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:5141520C>T	uc001ihr.2	+	5	632	c.449C>T	c.(448-450)GCC>GTC	p.A150V	AKR1C3_uc010qap.1_Missense_Mutation_p.A127V|AKR1C3_uc001ihu.2_Missense_Mutation_p.A150V	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	150					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	TCTCCACAGGCCATGGAGAAG	0.478													14	30					0	0	1	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5203849	5203849	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:5203849G>A	uc009xhz.2	-	3		c.431C>T				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						GAATAATGAAGAGATCTACAT	0.413													9	23					0	0	1	0	0
ITIH5	80760	broad.mit.edu	37	10	7618460	7618460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:7618460G>A	uc001ijq.2	-	10	2013	c.1934C>T	c.(1933-1935)CCC>CTC	p.P645L	ITIH5_uc001ijp.2_Missense_Mutation_p.P431L|ITIH5_uc001ijr.1_Missense_Mutation_p.P645L	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	645					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CACCGGTTCGGGTCCCATGGC	0.672													9	26					0	0	1	0	0
NUDT5	11164	broad.mit.edu	37	10	12221127	12221127	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:12221127A>G	uc001ilj.2	-	4	552	c.136T>C	c.(136-138)TGG>CGG	p.W46R	NUDT5_uc001ilk.2_Missense_Mutation_p.W46R	NM_014142	NP_054861	Q9UKK9	NUDT5_HUMAN	nudix-type motif 5	46	Substrate binding; shared with dimeric partner.			W->A: Reduces affinity for substrate about 6-fold. Strongly reduced catalytic activity and strongly reduced affinity for substrate; when associated with A-28.	D-ribose catabolic process|ribonucleoside diphosphate catabolic process	intracellular	ADP-ribose diphosphatase activity|magnesium ion binding			ovary(1)|pancreas(1)	2		Renal(717;0.228)				ACTGATTCCCAAGTTCTGTTC	0.408													116	276					0	0	1	0	0
CCDC3	83643	broad.mit.edu	37	10	12940554	12940554	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:12940554C>T	uc001ilq.1	-	3	809	c.675G>A	c.(673-675)AAG>AAA	p.K225K	CCDC3_uc009xjb.1_RNA|CCDC3_uc001ilr.2_RNA|CCDC3_uc009xjc.1_RNA	NM_031455	NP_113643	Q9BQI4	CCDC3_HUMAN	coiled-coil domain containing 3 precursor	225	Potential.					endoplasmic reticulum|extracellular region				ovary(1)	1		Ovarian(717;0.0822)	BRCA - Breast invasive adenocarcinoma(52;0.163)			GCAAGGACCTCTTGACCTTCT	0.622													22	91					0	0	1	0	0
OLAH	55301	broad.mit.edu	37	10	15106425	15106425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:15106425G>A	uc001inu.2	+	5	580	c.326G>A	c.(325-327)AGG>AAG	p.R109K	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.R162K	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	109					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						ATTGCTTTTAGGACTGCACTA	0.358													10	41					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21129757	21129757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:21129757C>T	uc001iqi.2	-	13	1646	c.1249G>A	c.(1249-1251)GAA>AAA	p.E417K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	417	Nebulin 11.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						ATCTCATTTTCCAAATCTTTT	0.343													7	27					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21178808	21178808	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:21178808T>A	uc001iqi.2	-	3	621	c.224A>T	c.(223-225)AAC>ATC	p.N75I	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	75	Nebulin 2.			N -> T (in Ref. 2; AAF24858).	regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TTTTACATGGTTTAGCATAGG	0.308													13	34					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26414365	26414365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:26414365G>A	uc001isn.2	+	19	2302	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K	MYO3A_uc009xko.1_Missense_Mutation_p.E648K|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	648	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TGAGCTACAAGAAGCTCTCAC	0.433													11	54					0	0	1	0	0
GAD2	2572	broad.mit.edu	37	10	26575315	26575315	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:26575315C>T	uc001isp.2	+	13	1781	c.1278C>T	c.(1276-1278)CTC>CTT	p.L426L	GAD2_uc001isq.2_Silent_p.L426L	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	426					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CCTCCTACCTCTTTCAGCAAG	0.398													23	45					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687745	27687745	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:27687745G>A	uc001itu.2	-	4	1900	c.1782C>T	c.(1780-1782)CCC>CCT	p.P594P		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	594					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TTGTGAGAAAGGGGCCAAAAT	0.363													7	20					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702972	27702972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:27702972C>T	uc001itu.2	-	1	326	c.208G>A	c.(208-210)GAG>AAG	p.E70K		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	70					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TCGTCCCCCTCTGGCAGGGGT	0.716													23	50					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28225687	28225687	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:28225687C>T	uc009xky.2	-	15	2318	c.2220G>A	c.(2218-2220)TGG>TGA	p.W740*	ARMC4_uc010qds.1_Nonsense_Mutation_p.W265*|ARMC4_uc010qdt.1_Nonsense_Mutation_p.W432*|ARMC4_uc001itz.2_Nonsense_Mutation_p.W740*	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	740							binding			ovary(4)|skin(2)	6						TGGAACATTTCCATATAGCCC	0.443													29	100					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28233336	28233336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:28233336C>T	uc009xky.2	-	12	1656	c.1558G>A	c.(1558-1560)GAA>AAA	p.E520K	ARMC4_uc010qds.1_Missense_Mutation_p.E45K|ARMC4_uc010qdt.1_Missense_Mutation_p.E212K|ARMC4_uc001itz.2_Missense_Mutation_p.E520K|ARMC4_uc010qdu.1_Missense_Mutation_p.E212K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	520	ARM 1.						binding			ovary(4)|skin(2)	6						TGACTGATTTCCTTCAGTATT	0.343													12	17					0	0	1	0	0
MPP7	143098	broad.mit.edu	37	10	28358748	28358748	+	Missense_Mutation	SNP	C	T	T	rs147738330		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:28358748C>T	uc001iua.1	-	15	1561	c.1157G>A	c.(1156-1158)CGA>CAA	p.R386Q	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.R386Q|MPP7_uc009xla.2_Missense_Mutation_p.R386Q|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	386	Guanylate kinase-like.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						CAGCAGCTTTCGTTTCAGTTC	0.438													12	25					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315735	30315736	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:30315735_30315736GG>AA	uc001iux.2	-	2	3400_3401	c.3341_3342CC>TT	c.(3340-3342)CCC>CTT	p.P1114L	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.P976L|KIAA1462_uc009xle.1_Missense_Mutation_p.P1114L	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1114										ovary(4)	4						CACTTGCATCGGGCTCAGCAGG	0.634													19	57					0	0	1	0	0
ZEB1	6935	broad.mit.edu	37	10	31810202	31810202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:31810202C>T	uc001ivs.3	+	7	2002	c.1939C>T	c.(1939-1941)CCT>TCT	p.P647S	ZEB1_uc001ivr.3_Missense_Mutation_p.P429S|ZEB1_uc010qee.1_Missense_Mutation_p.P429S|ZEB1_uc010qef.1_Missense_Mutation_p.P429S|ZEB1_uc009xlj.1_Missense_Mutation_p.P573S|ZEB1_uc010qeg.1_Missense_Mutation_p.P506S|ZEB1_uc009xlk.1_Missense_Mutation_p.P429S|ZEB1_uc001ivt.3_Missense_Mutation_p.P429S|ZEB1_uc001ivu.3_Missense_Mutation_p.P648S|ZEB1_uc001ivv.3_Missense_Mutation_p.P627S|ZEB1_uc010qeh.1_Missense_Mutation_p.P580S|ZEB1_uc009xlo.1_Missense_Mutation_p.P630S|ZEB1_uc009xlp.2_Missense_Mutation_p.P631S	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	647					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ACCATCTTCTCCTGAACCAGG	0.418													13	17					0	0	1	0	0
NRP1	8829	broad.mit.edu	37	10	33491907	33491907	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:33491907C>T	uc001iwx.3	-	11	2299	c.1776G>A	c.(1774-1776)CCG>CCA	p.P592P	NRP1_uc001iwv.3_Silent_p.P592P|NRP1_uc009xlz.2_Silent_p.P592P|NRP1_uc001iww.3_Silent_p.P411P|NRP1_uc001iwy.3_Silent_p.P592P|NRP1_uc001iwz.2_Silent_p.P592P|NRP1_uc001ixa.2_Intron|NRP1_uc001ixb.1_Silent_p.P592P	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	592	Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TGGGAGTGGTCGGTCCAGCTG	0.502													15	58					0	0	1	0	0
PARD3	56288	broad.mit.edu	37	10	34400111	34400111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:34400111G>A	uc010qej.1	-	25	4057	c.4057C>T	c.(4057-4059)CCC>TCC	p.P1353S	PARD3_uc010qek.1_Missense_Mutation_p.P1350S|PARD3_uc010qel.1_Missense_Mutation_p.P1316S|PARD3_uc010qem.1_Missense_Mutation_p.P1337S|PARD3_uc010qen.1_Missense_Mutation_p.P1307S|PARD3_uc010qeo.1_Missense_Mutation_p.P1270S|PARD3_uc010qep.1_Missense_Mutation_p.P1263S|PARD3_uc010qeq.1_Missense_Mutation_p.P1241S|uc001ixe.1_5'Flank	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	1353					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				GAATAGAAGGGCCTCCCTTTC	0.502													21	59					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37478473	37478473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:37478473G>A	uc001iza.1	+	25	2431	c.2332G>A	c.(2332-2334)GGA>AGA	p.G778R		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	834						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TAAAATAAATGGAAAATTAGA	0.308													21	26					0	0	1	0	0
ZNF37B	100129482	broad.mit.edu	37	10	43016349	43016349	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:43016349G>A	uc001jab.3	-	5		c.2851C>T			ZNF37B_uc001jac.3_RNA|ZNF37B_uc001jaa.3_RNA					Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein.												0						GAATTCTCAGGGAAAGCTTTC	0.373													11	27					0	0	1	0	0
BMS1	9790	broad.mit.edu	37	10	43312104	43312104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:43312104C>T	uc001jaj.2	+	14	2745	c.2387C>T	c.(2386-2388)TCA>TTA	p.S796L		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	796					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						AAGGGAAAATCAGGCCCCAAT	0.483													8	37					0	0	1	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43650774	43650774	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:43650774C>T	uc001jan.2	+	2	512	c.177C>T	c.(175-177)GCC>GCT	p.A59A	CSGALNACT2_uc001jam.1_Silent_p.A59A	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	59	Lumenal (Potential).|Potential.				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						ATTATCAAGCCCTCCTACAGG	0.413													14	26					0	0	1	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43651086	43651086	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:43651086C>T	uc001jan.2	+	2	824	c.489C>T	c.(487-489)CTC>CTT	p.L163L	CSGALNACT2_uc001jam.1_Silent_p.L163L	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	163	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						AAATGGGTCTCACTCGCCATC	0.413													12	29					0	0	1	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285055	44285055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:44285055C>T	uc010qfe.1	-	1	811	c.781G>A	c.(781-783)GGA>AGA	p.G261R		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						tcacctcctccataactacct	0.025													18	29					0	0	1	0	0
AGAP4	119016	broad.mit.edu	37	10	46321421	46321421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:46321421G>A	uc001jcx.3	-	7	2060	c.1934C>T	c.(1933-1935)TCC>TTC	p.S645F	AGAP4_uc010qfl.1_Missense_Mutation_p.S668F|AGAP4_uc001jcy.3_Missense_Mutation_p.S560F|uc010qfm.1_5'Flank	NM_133446	NP_597703	Q96P64	AGAP4_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	645	ANK 2.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			ovary(1)	1						CTCCTGGCTGGAGGCCTGCCG	0.582													33	104					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48385879	48385879	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:48385879G>A	uc001jez.2	-	2	3327	c.3213C>T	c.(3211-3213)ATC>ATT	p.I1071I		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1071	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CCGTGTGCATGATCTTCTTCC	0.562													33	82					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48388515	48388515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:48388515C>T	uc001jez.2	-	1	2477	c.2363G>A	c.(2362-2364)AGC>AAC	p.S788N		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	788	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CGTGGAGTAGCTGCCAGGGTT	0.617													4	29					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48388693	48388693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:48388693G>A	uc001jez.2	-	1	2299	c.2185C>T	c.(2185-2187)CTT>TTT	p.L729F		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	729	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GCCTCAATAAGGTAGGTGAGC	0.632													18	44					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48390122	48390122	+	Silent	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:48390122G>T	uc001jez.2	-	1	870	c.756C>A	c.(754-756)GCC>GCA	p.A252A		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	252	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CCACCACGATGGCCCTGCGCA	0.647													11	23					4.68919e-08	4.7435e-08	1	1	0
GDF2	2658	broad.mit.edu	37	10	48413649	48413649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:48413649C>T	uc001jfa.1	-	2	1382	c.1219G>A	c.(1219-1221)GAT>AAT	p.D407N		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	407					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CCCATGTCATCCTTGTAGAGG	0.612													6	22					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	49218327	49218327	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:49218327C>T	uc001jgd.2	-	8	1971	c.1812G>A	c.(1810-1812)CTG>CTA	p.L604L	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		CGTACCAGATCAGGAGCTGCT	0.657													54	283					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49395325	49395325	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:49395325C>A	uc001jgi.2	-	17	2283	c.2176G>T	c.(2176-2178)GGC>TGC	p.G726C	FRMPD2_uc001jgh.2_Missense_Mutation_p.G694C|FRMPD2_uc001jgj.2_Missense_Mutation_p.G704C	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	726					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TGCTCCCGGCCAGTGCAGGGG	0.562													7	20					0.000442599	0.000445362	1	1	0
ARHGAP22	58504	broad.mit.edu	37	10	49687743	49687743	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:49687743G>A	uc001jgt.2	-	4	684	c.387C>T	c.(385-387)TCC>TCT	p.S129S	ARHGAP22_uc001jgs.2_Silent_p.S39S|ARHGAP22_uc001jgu.2_Silent_p.S129S|ARHGAP22_uc010qgl.1_Intron|ARHGAP22_uc010qgm.1_Silent_p.S135S|ARHGAP22_uc001jgv.2_5'UTR|uc001jgw.2_5'Flank	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	129	PH.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						TGTCACGCTGGGAGCTGGCCA	0.677													8	11					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50121667	50121667	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:50121667G>A	uc001jhd.2	-	1	614	c.534C>T	c.(532-534)CCC>CCT	p.P178P	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.P178P	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	178	LRR 7.					cytoplasm				ovary(1)|pancreas(1)	2						GCTTTGGAAAGGGGTTCCGCT	0.512													12	41					0	0	1	0	0
ERCC6	2074	broad.mit.edu	37	10	50740990	50740990	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:50740990G>A	uc001jhs.3	-	2	175	c.21C>T	c.(19-21)CCC>CCT	p.P7P	PGBD3_uc009xoe.2_Silent_p.P7P|PGBD3_uc001jhu.2_Silent_p.P7P	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	7					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						GACTTGAGTGGGGGATTCCCT	0.373								Direct_reversal_of_damage|NER					20	32					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52580326	52580326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:52580326C>T	uc001jjj.2	-	8	1041	c.853G>A	c.(853-855)GCT>ACT	p.A285T	A1CF_uc010qhn.1_Missense_Mutation_p.A293T|A1CF_uc001jji.2_Missense_Mutation_p.A285T|A1CF_uc001jjh.2_Missense_Mutation_p.A293T|A1CF_uc010qho.1_Missense_Mutation_p.A293T|A1CF_uc009xov.2_Missense_Mutation_p.A285T	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	285	RRM 3.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CCATTTAAAGCTTTCATAGCC	0.403													7	30					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52603817	52603817	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:52603817G>A	uc001jjj.2	-	4	353	c.165C>T	c.(163-165)GGC>GGT	p.G55G	A1CF_uc010qhn.1_Silent_p.G63G|A1CF_uc001jji.2_Silent_p.G55G|A1CF_uc001jjh.2_Silent_p.G63G|A1CF_uc010qho.1_Silent_p.G63G|A1CF_uc009xov.2_Silent_p.G55G|A1CF_uc001jjk.1_Silent_p.G55G	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	55					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						AAATTTCACAGCCCCTTTCAG	0.423													29	64					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55566598	55566598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:55566598G>A	uc010qhq.1	-	36	5185	c.4790C>T	c.(4789-4791)TCA>TTA	p.S1597L	PCDH15_uc010qhr.1_Missense_Mutation_p.S1592L	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGGCCCCTTTGATAATGTGTT	0.458										HNSCC(58;0.16)			67	164					0	0	1	0	0
SLC16A9	220963	broad.mit.edu	37	10	61443980	61443980	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:61443980A>G	uc010qig.1	-	2	519	c.70T>C	c.(70-72)TTT>CTT	p.F24L		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	24	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						TAACACAAAAACTGAGTAAGG	0.478													36	91					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61802491	61802491	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:61802491C>T	uc001jky.2	-	43	13284	c.13092G>A	c.(13090-13092)ACG>ACA	p.T4364T	ANK3_uc001jkw.2_Silent_p.T988T|ANK3_uc009xpa.2_Silent_p.T987T|ANK3_uc001jkx.2_Silent_p.T1031T|ANK3_uc010qih.1_Silent_p.T1855T|ANK3_uc001jkz.3_Silent_p.T1848T|ANK3_uc001jkv.2_Silent_p.T387T	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4364					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTCTTTCTTCGTTTTCACCT	0.398													21	71					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61815475	61815475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:61815475C>T	uc001jky.2	-	42	13198	c.13006G>A	c.(13006-13008)GAT>AAT	p.D4336N	ANK3_uc001jkw.2_Missense_Mutation_p.D960N|ANK3_uc009xpa.2_Missense_Mutation_p.D960N|ANK3_uc001jkx.2_Missense_Mutation_p.D1004N|ANK3_uc010qih.1_Missense_Mutation_p.D1827N|ANK3_uc001jkz.3_Missense_Mutation_p.D1820N|ANK3_uc001jkv.2_Missense_Mutation_p.D359N	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4336					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGCTTGCCATCTGCTGGAGAA	0.453													65	172					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	67726406	67726406	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:67726406C>T	uc009xpn.1	-	17	2487	c.2364G>A	c.(2362-2364)GAG>GAA	p.E788E	CTNNA3_uc001jmw.2_Silent_p.E788E	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	788					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						GGTTCTGGATCTCAGCTTTAA	0.463													19	53					0	0	1	0	0
STOX1	219736	broad.mit.edu	37	10	70644268	70644268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:70644268C>T	uc001jos.2	+	3	803	c.716C>T	c.(715-717)TCC>TTC	p.S239F	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Missense_Mutation_p.S129F	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	239						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						GCCCCCATATCCCACTGTCAG	0.527													23	49					0	0	1	0	0
DDX21	9188	broad.mit.edu	37	10	70737410	70737410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:70737410C>T	uc001jov.1	+	12	1958	c.1868C>T	c.(1867-1869)TCC>TTC	p.S623F	DDX21_uc001jow.1_Missense_Mutation_p.S555F	NM_004728	NP_004719	Q9NR30	DDX21_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	623						nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)	3						GGTGCCACGTCCGTAGACCAG	0.488													25	73					0	0	1	0	0
TACR2	6865	broad.mit.edu	37	10	71175909	71175909	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:71175909G>A	uc001jpn.2	-	1	766	c.171C>T	c.(169-171)ATC>ATT	p.I57I		NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	57	Cytoplasmic (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	GGGCCAGGATGATCCAGATGA	0.602													18	40					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73330619	73330619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:73330619G>A	uc001jrx.3	+	8	1074	c.697G>A	c.(697-699)GAC>AAC	p.D233N	CDH23_uc001jrw.3_Missense_Mutation_p.D233N|CDH23_uc009xql.2_Missense_Mutation_p.D278N	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	233	Cadherin 2.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCAGGACATGGACCCCATCTT	0.537											OREG0020254	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	25					0	0	1	0	0
PSAP	5660	broad.mit.edu	37	10	73594158	73594158	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:73594158G>A	uc001jsm.2	-	2	249	c.145C>T	c.(145-147)CTG>TTG	p.L49L		NM_002778	NP_002769	P07602	SAP_HUMAN	prosaposin isoform a preproprotein	49	Saposin A-type 1.				glycosphingolipid metabolic process|lipid transport|platelet activation|platelet degranulation	extracellular space|Golgi apparatus|integral to membrane|lysosomal lumen	enzyme activator activity|lipid binding			ovary(1)	1						ACGGTCTGCAGGCAGTGCTTC	0.557													10	18					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75082833	75082833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:75082833G>A	uc009xrc.2	-	10	1131	c.1010C>T	c.(1009-1011)TCG>TTG	p.S337L	TTC18_uc001jty.2_Missense_Mutation_p.S337L|TTC18_uc009xrd.1_Missense_Mutation_p.S145L	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	337							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					ACCATGAAACGAAAGCTGAGC	0.318													23	36					0	0	1	0	0
KIAA0913	23053	broad.mit.edu	37	10	75551948	75551948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:75551948G>A	uc009xrl.2	+	10	1683	c.1651G>A	c.(1651-1653)GGC>AGC	p.G551S	KIAA0913_uc001jve.2_Missense_Mutation_p.G551S|KIAA0913_uc001jvf.2_Missense_Mutation_p.G551S|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_5'UTR|KIAA0913_uc010qkr.1_5'UTR|KIAA0913_uc001jvj.2_5'UTR	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	551	Gly-rich.						zinc ion binding			breast(1)	1	Prostate(51;0.0112)					CAAGCGAAAGGGCTTGGGTGA	0.667													5	22					0	0	1	0	0
KIAA0913	23053	broad.mit.edu	37	10	75552441	75552441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:75552441C>T	uc009xrl.2	+	10	2176	c.2144C>T	c.(2143-2145)ACC>ATC	p.T715I	KIAA0913_uc001jve.2_Missense_Mutation_p.T715I|KIAA0913_uc001jvf.2_Missense_Mutation_p.T715I|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_Missense_Mutation_p.T138I|KIAA0913_uc010qkr.1_Missense_Mutation_p.T138I|KIAA0913_uc001jvj.2_Missense_Mutation_p.T138I	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	715							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					CTTCCCAAAACCAAAGAGGCA	0.602													14	27					0	0	1	0	0
SH2D4B	387694	broad.mit.edu	37	10	82331305	82331305	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:82331305C>T	uc001kck.1	+	3	896	c.466C>T	c.(466-468)CTG>TTG	p.L156L	SH2D4B_uc001kcl.1_Silent_p.L107L	NM_207372	NP_997255	Q5SQS7	SH24B_HUMAN	SH2 domain containing 4B isoform 1	155	Glu-rich.										0			Colorectal(32;0.229)			TGCCAAAGTCCTGGAGGAACG	0.597													16	50					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85960389	85960389	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:85960389C>T	uc001kcv.2	+	6	471	c.471C>T	c.(469-471)GTC>GTT	p.V157V	CDHR1_uc001kcw.2_Silent_p.V157V|CDHR1_uc009xst.2_5'Flank	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	157	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						TCTTTAAGGTCCATGCAGTGG	0.597													9	9					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85972965	85972965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:85972965C>T	uc001kcv.2	+	16	1901	c.1901C>T	c.(1900-1902)TCC>TTC	p.S634F	CDHR1_uc001kcw.2_Missense_Mutation_p.S634F|CDHR1_uc009xst.2_Missense_Mutation_p.S338F|CDHR1_uc001kcx.2_5'UTR	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	634	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						CTCAAGAATTCCATCCGCTCC	0.587													34	78					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87484278	87484278	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:87484278G>A	uc001kdl.1	-	11	1790	c.1689C>T	c.(1687-1689)TTC>TTT	p.F563F	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.F134F	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	563	Helical; (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CCCACACAGCGAAATCAAATG	0.507										Multiple Myeloma(13;0.14)			18	41					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88769257	88769257	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:88769257G>A	uc001kee.2	+	12	2452	c.1248G>A	c.(1246-1248)ACG>ACA	p.T416T	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	416	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						AGGGGCAGACGAAACCCTCAA	0.527													40	134					0	0	1	0	0
FAM22D	728130	broad.mit.edu	37	10	89120453	89120453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:89120453G>A	uc001kes.2	+	2	928	c.382G>A	c.(382-384)GCT>ACT	p.A128T	FAM22D_uc009xte.1_Missense_Mutation_p.A128T	NM_001009610	NP_001009610	Q5VT03	FA22D_HUMAN	hypothetical protein LOC728130	128											0						TGGGGCCGGGGCTTCCAACGT	0.647													12	48					0	0	1	0	0
STAMBPL1	57559	broad.mit.edu	37	10	90673100	90673100	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:90673100C>T	uc001kfk.2	+	6	1086	c.663C>T	c.(661-663)TCC>TCT	p.S221S	STAMBPL1_uc010qmx.1_Silent_p.S221S|STAMBPL1_uc009xto.2_RNA|STAMBPL1_uc001kfl.2_Silent_p.S221S|STAMBPL1_uc001kfn.2_Silent_p.S55S	NM_020799	NP_065850	Q96FJ0	STALP_HUMAN	STAM binding protein-like 1	221							metal ion binding|metallopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0381)		Colorectal(12;6.38e-05)|COAD - Colon adenocarcinoma(12;7.75e-05)		AGAACAATTCCTTGCTGAATG	0.478													20	59					0	0	1	0	0
IFIT2	3433	broad.mit.edu	37	10	91066442	91066443	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:91066442_91066443CC>TT	uc009xts.2	+	2	904_905	c.729_730CC>TT	c.(727-732)GCCCCA>GCTTCA	p.P244S	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron	NM_001547	NP_001538	P09913	IFIT2_HUMAN	interferon-induced protein with	244					negative regulation of protein binding|response to virus|type I interferon-mediated signaling pathway		protein binding			ovary(1)|skin(1)	2		Colorectal(252;0.0161)				TGGAGAAAGCCCCAGGTGTAAC	0.436													17	44					0	0	1	0	0
RPP30	10556	broad.mit.edu	37	10	92634652	92634652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:92634652C>T	uc009xtx.2	+	2	144	c.109C>T	c.(109-111)CAT>TAT	p.H37Y	RPP30_uc001khd.2_Missense_Mutation_p.H37Y|RPP30_uc010qnj.1_Missense_Mutation_p.H37Y	NM_006413	NP_006404	P78346	RPP30_HUMAN	ribonuclease P/MRP 30kDa subunit isoform b	37					tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity				0						TGCTATCAATCATATCGTTGA	0.289													14	30					0	0	1	0	0
CPEB3	22849	broad.mit.edu	37	10	93940758	93940758	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:93940758A>G	uc001khw.1	-	4	1357	c.1184T>C	c.(1183-1185)TTC>TCC	p.F395S	CPEB3_uc001khu.1_Missense_Mutation_p.F395S|CPEB3_uc001khv.1_Missense_Mutation_p.F372S|CPEB3_uc010qnn.1_Missense_Mutation_p.F372S	NM_014912	NP_055727	Q8NE35	CPEB3_HUMAN	cytoplasmic polyadenylation element binding	395							nucleotide binding|RNA binding				0		Colorectal(252;0.0869)				TGGATGATGGAAATTTATCCC	0.264													9	32					0	0	1	0	0
MYOF	26509	broad.mit.edu	37	10	95111581	95111581	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:95111581G>A	uc001kin.2	-	33	3627	c.3504C>T	c.(3502-3504)TTC>TTT	p.F1168F	MYOF_uc001kio.2_Silent_p.F1155F|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1168	Cytoplasmic (Potential).|C2 4.				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						TCCGATGGAGGAAACAGATAT	0.438													14	35					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	96030337	96030337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:96030337G>A	uc001kjk.2	+	18	5118	c.4484G>A	c.(4483-4485)CGA>CAA	p.R1495Q	PLCE1_uc010qnx.1_Missense_Mutation_p.R1479Q|PLCE1_uc001kjm.2_Missense_Mutation_p.R1187Q	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1495	PI-PLC X-box.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CCTCAGCAACGAAAAATGGCA	0.403													22	52					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96740982	96740982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:96740982G>A	uc001kka.3	+	7	1029	c.1004G>A	c.(1003-1005)CGG>CAG	p.R335Q	CYP2C9_uc009xut.2_Missense_Mutation_p.R333Q	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	335					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GGCAGAAACCGGAGCCCCTGC	0.493													43	93					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96748604	96748604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:96748604G>A	uc001kka.3	+	9	1317	c.1292G>A	c.(1291-1293)GGA>GAA	p.G431E	CYP2C9_uc009xut.2_Missense_Mutation_p.G429E	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	431					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CTATTTTCAGGAAAACGGATT	0.438													29	74					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96802787	96802787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:96802787G>A	uc001kkb.2	-	7	1104	c.1009C>T	c.(1009-1011)CCC>TCC	p.P337S	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.P267S|CYP2C8_uc010qob.1_Missense_Mutation_p.P251S|CYP2C8_uc010qoc.1_Missense_Mutation_p.P235S|CYP2C8_uc010qod.1_Missense_Mutation_p.P251S	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	337					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	TGCATGCAGGGGCTCCTGTGT	0.483													22	52					0	0	1	0	0
PYROXD2	84795	broad.mit.edu	37	10	100152729	100152729	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:100152729G>A	uc001kpc.2	-	9	983	c.897C>T	c.(895-897)ACC>ACT	p.T299T	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	299							oxidoreductase activity			central_nervous_system(1)	1						CTCCATGTGTGGTGGCTGAGC	0.577													29	46					0	0	1	0	0
HPS1	3257	broad.mit.edu	37	10	100177398	100177398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:100177398G>A	uc010qpf.1	-	20	2272	c.2026C>T	c.(2026-2028)CCC>TCC	p.P676S	PYROXD2_uc001kpc.2_5'Flank|PYROXD2_uc001kpd.2_5'Flank|PYROXD2_uc010qpe.1_5'Flank|HPS1_uc001kpi.1_Missense_Mutation_p.P677S|HPS1_uc001kpj.1_Missense_Mutation_p.P585L|HPS1_uc001kpk.1_Missense_Mutation_p.P501S	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	676					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		AGGTCAGTGGGGATGACAGAC	0.677									Hermansky-Pudlak_syndrome				8	33					0	0	1	0	0
ENTPD7	57089	broad.mit.edu	37	10	101464379	101464379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:101464379C>T	uc001kqa.3	+	13	1932	c.1754C>T	c.(1753-1755)CCA>CTA	p.P585L	ENTPD7_uc009xwl.2_Missense_Mutation_p.P587L	NM_020354	NP_065087	Q9NQZ7	ENTP7_HUMAN	ectonucleoside triphosphate diphosphohydrolase	585	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	hydrolase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;4.72e-10)|all cancers(201;3.75e-08)		GCCTCAGCTCCATTGGACTTG	0.562													7	27					0	0	1	0	0
CPN1	1369	broad.mit.edu	37	10	101814184	101814184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:101814184C>T	uc001kql.2	-	7	1291	c.1031G>A	c.(1030-1032)GGA>GAA	p.G344E		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	344					proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		AAGCACCATTCCCTTGATGCC	0.338													31	66					0	0	1	0	0
WNT8B	7479	broad.mit.edu	37	10	102239763	102239763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:102239763C>T	uc001krb.2	+	3	349	c.235C>T	c.(235-237)CGC>TGC	p.R79C		NM_003393	NP_003384	Q93098	WNT8B_HUMAN	wingless-type MMTV integration site family,	79					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|determination of dorsal identity|endoderm development|eye development|gastrulation|hypothalamus development|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|otic placode formation|positive regulation of gene expression|response to estradiol stimulus|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(1)|breast(1)|large_intestine(1)|skin(1)	4		Colorectal(252;0.117)		Epithelial(162;1.87e-10)|all cancers(201;1.64e-08)		TGGTGGGCTTCGCAGTGGTAA	0.577													13	32					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103900286	103900286	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:103900286T>C	uc001kum.2	+	5	2060	c.2021T>C	c.(2020-2022)GTT>GCT	p.V674A	PPRC1_uc001kun.2_Missense_Mutation_p.V554A|PPRC1_uc010qqj.1_Missense_Mutation_p.V674A|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	674					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GTTGACCCTGTTCCTAATGAC	0.557													11	54					0	0	1	0	0
ELOVL3	83401	broad.mit.edu	37	10	103987394	103987395	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:103987394_103987395TC>AT	uc001kut.2	+	2	276_277	c.113_114TC>AT	c.(112-114)TTC>TAT	p.F38Y		NM_152310	NP_689523	Q9HB03	ELOV3_HUMAN	elongation of very long chain fatty acids like	38	Helical; (Potential).				fatty acid elongation, monounsaturated fatty acid|fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding			ovary(2)	2		Colorectal(252;0.207)		Epithelial(162;4.47e-08)|all cancers(201;7.96e-07)		GCAACCTCATTCCCCATAGCCC	0.54													35	101					0	0	1	0	0
ELOVL3	83401	broad.mit.edu	37	10	103988208	103988208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:103988208G>A	uc001kut.2	+	3	431	c.268G>A	c.(268-270)GGG>AGG	p.G90R		NM_152310	NP_689523	Q9HB03	ELOV3_HUMAN	elongation of very long chain fatty acids like	90					fatty acid elongation, monounsaturated fatty acid|fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding			ovary(2)	2		Colorectal(252;0.207)		Epithelial(162;4.47e-08)|all cancers(201;7.96e-07)		GGGCATTATGGGGACTGTGCT	0.507													16	34					0	0	1	0	0
CALHM1	255022	broad.mit.edu	37	10	105215174	105215174	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:105215174G>A	uc001kxe.2	-	2	1026	c.886C>T	c.(886-888)CAA>TAA	p.Q296*	CALHM2_uc001kxd.1_5'Flank	NM_001001412	NP_001001412	Q8IU99	CAHM1_HUMAN	calcium homeostasis modulator 1	296						endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel activity|identical protein binding			ovary(1)	1						ATGGTGCCTTGATCCGTGATG	0.672													6	21					0	0	1	0	0
ADD3	120	broad.mit.edu	37	10	111879043	111879043	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:111879043C>T	uc001kyt.3	+	8	1106	c.792C>T	c.(790-792)GAC>GAT	p.D264D	ADD3_uc001kys.3_Silent_p.D264D|ADD3_uc001kyu.2_Silent_p.D264D|ADD3_uc001kyv.2_Silent_p.D264D|ADD3_uc001kyw.2_Silent_p.D264D	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	264						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		CCTATTATGACTACCAAGGGT	0.428													17	51					0	0	1	0	0
SMC3	9126	broad.mit.edu	37	10	112364028	112364028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:112364028G>A	uc001kze.2	+	29	3748	c.3622G>A	c.(3622-3624)GAC>AAC	p.D1208N		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	1208					cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		GATGGCCAAAGACTTTGTAGA	0.333													12	30					0	0	1	0	0
PDCD4	27250	broad.mit.edu	37	10	112641009	112641009	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:112641009A>G	uc001kzh.2	+	3	305	c.62A>G	c.(61-63)GAC>GGC	p.D21G	PDCD4_uc001kzg.2_Missense_Mutation_p.D10G|PDCD4_uc010qre.1_Intron	NM_014456	NP_055271	Q53EL6	PDCD4_HUMAN	programmed cell death 4 isoform 1	21					apoptosis|cell aging|negative regulation of cell cycle|negative regulation of JUN kinase activity|negative regulation of transcription, DNA-dependent	cytosol|nucleus	protein binding|RNA binding			ovary(1)|breast(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.000526)|all cancers(201;0.00794)|BRCA - Breast invasive adenocarcinoma(275;0.125)		AACTTAAGTGACTCTCTCTTT	0.303													27	74					0	0	1	0	0
SEC23IP	11196	broad.mit.edu	37	10	121675273	121675273	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:121675273G>A	uc001leu.1	+	8	1488	c.1416G>A	c.(1414-1416)AGG>AGA	p.R472R	SEC23IP_uc010qtc.1_Silent_p.R261R	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	472					Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		ATGATTTTAGGGTGGTTTCTC	0.358													17	30					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124358450	124358450	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:124358450C>T	uc001lgk.1	+	26	3223	c.3117C>T	c.(3115-3117)GCC>GCT	p.A1039A	DMBT1_uc001lgl.1_Silent_p.A1029A|DMBT1_uc001lgm.1_Silent_p.A540A|DMBT1_uc009xzz.1_Silent_p.A1039A|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1039	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTGGCTGGGCCATGTCAGCCC	0.602													168	113					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124358464	124358464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:124358464G>A	uc001lgk.1	+	26	3237	c.3131G>A	c.(3130-3132)GGA>GAA	p.G1044E	DMBT1_uc001lgl.1_Missense_Mutation_p.G1034E|DMBT1_uc001lgm.1_Missense_Mutation_p.G545E|DMBT1_uc009xzz.1_Missense_Mutation_p.G1044E|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.G5E	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1044	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCAGCCCCAGGAAATGCCCGG	0.612													152	104					0	0	1	0	0
C10orf120	399814	broad.mit.edu	37	10	124457628	124457628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:124457628C>T	uc001lgn.2	-	3	661	c.629G>A	c.(628-630)CGA>CAA	p.R210Q		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	210										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				GTCTTCCTTTCGTCTGGCCTT	0.433													32	15					0	0	1	0	0
ACADSB	36	broad.mit.edu	37	10	124802592	124802592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:124802592G>A	uc001lhb.2	+	6	829	c.712G>A	c.(712-714)GAT>AAT	p.D238N	ACADSB_uc010qub.1_Missense_Mutation_p.D136N	NM_001609	NP_001600	P45954	ACDSB_HUMAN	acyl-Coenzyme A dehydrogenase, short/branched	238					branched chain family amino acid catabolic process|fatty acid metabolic process	mitochondrial matrix	flavin adenine dinucleotide binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.0811)|COAD - Colon adenocarcinoma(40;0.0835)	L-Isoleucine(DB00167)	CTTCTTAGTAGATCGTGATAC	0.403													59	35					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	134627675	134627676	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:134627675_134627676CC>TT	uc010qux.1	-	46	6546_6547	c.6546_6547GG>AA	c.(6544-6549)CTGGGA>CTAAGA	p.G2183R		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		TGCTTGCTTCCCAGATGTCCCG	0.584													17	14					0	0	1	0	0
C10orf93	255352	broad.mit.edu	37	10	134743195	134743195	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:134743195A>T	uc001llt.1	-	9	1056	c.980T>A	c.(979-981)ATG>AAG	p.M327K		NM_173572	NP_775843	Q5SR76	CJ093_HUMAN	hypothetical protein LOC255352	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							binding			pancreas(1)	1		all_cancers(35;1.8e-07)|all_epithelial(44;6.22e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Colorectal(31;0.119)|Glioma(114;0.172)|Melanoma(40;0.175)		Epithelial(32;4.28e-05)|OV - Ovarian serous cystadenocarcinoma(35;4.31e-05)|all cancers(32;5.02e-05)		CAGCAGTGTCATGAAGCCACT	0.537													56	47					0	0	1	0	0
FRG2B	441581	broad.mit.edu	37	10	135440236	135440236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr10:135440236C>T	uc010qvg.1	-	1	64	c.11G>A	c.(10-12)GGA>GAA	p.G4E		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	4						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GTCTTCATTTCCCTTTCCCAT	0.522													12	232					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1016881	1016881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:1016881C>T	uc001lsw.2	-	31	5971	c.5920G>A	c.(5920-5922)GGG>AGG	p.G1974R		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1974	Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGACTGCTCCCTGTAGGTGGG	0.587													15	529					0	0	1	0	0
NUP98	4928	broad.mit.edu	37	11	3744453	3744453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:3744453G>A	uc001lyh.2	-	16	2371	c.2080C>T	c.(2080-2082)CAT>TAT	p.H694Y	NUP98_uc001lyi.2_Missense_Mutation_p.H694Y|NUP98_uc001lyj.1_Missense_Mutation_p.H694Y|NUP98_uc001lyk.1_Missense_Mutation_p.H711Y	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	711					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		GACTCATCATGAAAAGACGTT	0.423			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								28	29					0	0	1	0	0
OR52I2	143502	broad.mit.edu	37	11	4608150	4608150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:4608150G>A	uc010qyh.1	+	1	108	c.108G>A	c.(106-108)ATG>ATA	p.M36I		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	36	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCACACAATGGAAACCCCTG	0.453													35	47					0	0	1	0	0
OR51A2	401667	broad.mit.edu	37	11	4976460	4976461	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:4976460_4976461GG>AA	uc010qyt.1	-	1	483_484	c.483_484CC>TT	c.(481-486)TTCCCT>TTTTCT	p.P162S		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	162	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAAGTGAAAGGGAAGGGAAGAA	0.436													34	48					0	0	1	0	0
HBD	3045	broad.mit.edu	37	11	5255304	5255304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:5255304G>A	uc001maf.1	-	2	427	c.232C>T	c.(232-234)CAC>TAC	p.H78Y		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	78					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTGTCCAGGTGAGCCAGGCCA	0.542													28	34					0	0	1	0	0
OR51B6	390058	broad.mit.edu	37	11	5373574	5373574	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:5373574C>T	uc010qzb.1	+	1	837	c.837C>T	c.(835-837)TTC>TTT	p.F279F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATCCACTTCCTTTTCCCAC	0.393													28	46					0	0	1	0	0
OR51B6	390058	broad.mit.edu	37	11	5373625	5373625	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:5373625G>A	uc010qzb.1	+	1	888	c.888G>A	c.(886-888)CAG>CAA	p.Q296Q	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAACTAAGCAGATTCAGAGTG	0.418													19	33					0	0	1	0	0
CNGA4	1262	broad.mit.edu	37	11	6261650	6261650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:6261650C>T	uc001mco.2	+	4	733	c.626C>T	c.(625-627)CCT>CTT	p.P209L	CNGA4_uc010raa.1_Intron|CNGA4_uc001mcn.2_Missense_Mutation_p.P169L	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	209	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCGCGCAGCCTGGCTTTGAG	0.582													37	66					0	0	1	0	0
OR5P2	120065	broad.mit.edu	37	11	7818017	7818017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:7818017G>A	uc001mfp.1	-	1	473	c.473C>T	c.(472-474)TCC>TTC	p.S158F		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	158	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AAAATAGAAGGAAGTAGTATA	0.393													24	26					0	0	1	0	0
OR10A3	26496	broad.mit.edu	37	11	7960409	7960409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:7960409C>T	uc010rbi.1	-	1	659	c.659G>A	c.(658-660)CGA>CAA	p.R220Q		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R220*(1)		pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AAACAGAACTCGAATGTAAGA	0.448													10	10					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10597933	10597933	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:10597933C>T	uc010rcc.1	-	21	3071	c.2685G>A	c.(2683-2685)CAG>CAA	p.Q895Q	uc001miu.2_Intron|MRVI1_uc001miw.2_Silent_p.Q886Q|MRVI1_uc010rcb.1_Silent_p.Q887Q|MRVI1_uc009ygb.1_Silent_p.Q580Q|MRVI1_uc001mix.2_Silent_p.Q580Q|MRVI1_uc001miz.2_Silent_p.Q804Q|MRVI1_uc009ygc.1_Silent_p.Q804Q|MRVI1_uc010rcd.1_Silent_p.Q689Q|MRVI1_uc009ygd.1_Silent_p.Q580Q	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	868					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		AGGAGTCCCTCTGGGCTGCCG	0.562													16	21					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	30902748	30902748	+	RNA	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:30902748C>A	uc001mss.1	-	15		c.2284G>T			uc009yjk.1_Missense_Mutation_p.M1175I|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		CACAGATGACCATATCTCGCT	0.448													7	21					5.18039e-06	5.22024e-06	1	1	0
PAMR1	25891	broad.mit.edu	37	11	35456111	35456111	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:35456111C>T	uc001mwg.2	-	10	1618	c.1575G>A	c.(1573-1575)GGG>GGA	p.G525G	PAMR1_uc001mwf.2_Silent_p.G542G|PAMR1_uc010rew.1_Silent_p.G414G|PAMR1_uc010rex.1_Silent_p.G485G	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	525	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						GGTAGAATTTCCCCAAAACAA	0.532													29	33					0	0	1	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136898	40136898	+	Nonsense_Mutation	SNP	C	T	T	rs151083424		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:40136898C>T	uc001mxa.1	-	2	2909	c.945G>A	c.(943-945)TGG>TGA	p.W315*	LRRC4C_uc001mxc.1_Nonsense_Mutation_p.W311*|LRRC4C_uc001mxd.1_Nonsense_Mutation_p.W311*|LRRC4C_uc001mxb.1_Nonsense_Mutation_p.W311*	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	315	LRRCT.				regulation of axonogenesis	integral to membrane	protein binding	p.W315*(1)		ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TGTCTTTTATCCACCAGCTGA	0.493													20	14					0	0	1	0	0
ALX4	60529	broad.mit.edu	37	11	44331188	44331189	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:44331188_44331189CC>TT	uc001myb.2	-	1	528_529	c.424_425GG>AA	c.(424-426)GGC>AAC	p.G142N		NM_021926	NP_068745	Q9H161	ALX4_HUMAN	aristaless-like homeobox 4	142					hair follicle development						0						GCCGCTGCTGCCTTCCTGGAGT	0.589													9	6					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48286018	48286018	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:48286018C>T	uc010rht.1	+	1	606	c.606C>T	c.(604-606)GGC>GGT	p.G202G		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						CCAATGGCGGCTCCATCTCCG	0.547													23	15					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48346903	48346903	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:48346903C>T	uc010rhv.1	+	1	411	c.411C>T	c.(409-411)ATC>ATT	p.I137I		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTGTTGAGATCATTCTGCTCA	0.478													36	105					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49973998	49973998	+	Silent	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:49973998A>T	uc010rhz.1	+	1	24	c.24A>T	c.(22-24)ACA>ACT	p.T8T		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ACAATGTGACAGAGTTTATTC	0.299													32	38					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55135686	55135686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:55135686G>A	uc010rif.1	+	1	327	c.327G>A	c.(325-327)ATG>ATA	p.M109I		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	109	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTCCCAAAATGATTGTTGACT	0.418													29	41					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55135906	55135906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:55135906C>T	uc010rif.1	+	1	547	c.547C>T	c.(547-549)CAC>TAC	p.H183Y		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	183	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGGCTTTCTTCACTCATTGGT	0.428													25	64					0	0	1	0	0
OR4C16	219428	broad.mit.edu	37	11	55339783	55339783	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:55339783C>T	uc010rih.1	+	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				TGTTCTTCTTCCTTTTCTACT	0.398													39	44					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55541375	55541375	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:55541375G>A	uc010ril.1	+	1	462	c.462G>A	c.(460-462)GGG>GGA	p.G154G		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				ATACATGGGGGATAGTGTGCT	0.398													60	71					0	0	1	0	0
OR8J1	219477	broad.mit.edu	37	11	56127902	56127902	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:56127902C>T	uc010rjh.1	+	1	180	c.180C>T	c.(178-180)TAC>TAT	p.Y60Y		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					CCCCCATGTACTTTTTCCTGC	0.448													43	41					0	0	1	0	0
OR8J1	219477	broad.mit.edu	37	11	56128589	56128589	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:56128589G>A	uc010rjh.1	+	1	867	c.867G>A	c.(865-867)TTG>TTA	p.L289L		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TGAATCCCTTGATCTACAGCC	0.388													15	34					0	0	1	0	0
CLP1	10978	broad.mit.edu	37	11	57426975	57426975	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:57426975G>A	uc001nkw.2	+	2	166	c.27G>A	c.(25-27)AAG>AAA	p.K9K	CLP1_uc010rjw.1_Silent_p.K9K|CLP1_uc009yml.2_Silent_p.K9K	NM_006831	NP_006822	Q92989	CLP1_HUMAN	ATP/GTP-binding protein isoform 1	9					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|siRNA loading onto RISC involved in RNA interference|targeting of mRNA for destruction involved in RNA interference|termination of RNA polymerase II transcription|tRNA splicing, via endonucleolytic cleavage and ligation	nucleoplasm|tRNA-intron endonuclease complex	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity			ovary(1)	1						ATGATGACAAGAAGCCAACCA	0.423													10	9					0	0	1	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722338	58722338	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:58722338C>T	uc001nnf.2	+	6	658	c.282C>T	c.(280-282)ATC>ATT	p.I94I	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Silent_p.I125I|GLYATL1_uc001nni.1_Silent_p.I94I|GLYATL1_uc001nnj.1_Silent_p.I94I			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	94						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	ATTGTGAGATCGTAAACTGGA	0.318													9	8					0	0	1	0	0
CCDC86	79080	broad.mit.edu	37	11	60615428	60615428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:60615428C>T	uc001nqa.2	+	2	959	c.790C>T	c.(790-792)CGC>TGC	p.R264C	CCDC86_uc001nqb.2_Missense_Mutation_p.R8C	NM_024098	NP_077003	Q9H6F5	CCD86_HUMAN	coiled-coil domain containing 86	264					interspecies interaction between organisms	nucleus					0						CAAGCCCCTGCGCACATCGTG	0.617													12	87					0	0	1	0	0
C11orf9	745	broad.mit.edu	37	11	61533560	61533560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:61533560C>T	uc001nsc.1	+	3	361	c.265C>T	c.(265-267)CCC>TCC	p.P89S	C11orf9_uc001nse.1_Missense_Mutation_p.P80S	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	89	Pro-rich.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						GCGCCATGGTCCCCTCCCACC	0.741													12	15					0	0	1	0	0
SLC22A9	114571	broad.mit.edu	37	11	63173968	63173968	+	Splice_Site	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:63173968G>A	uc001nww.2	+	7	1342	c.1074_splice	c.e7-1	p.R358_splice	SLC22A9_uc001nwx.2_Splice_Site	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation						transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						AATCATCACAGATTTGCAAAC	0.398													23	25					0	0	1	0	0
CCDC88B	283234	broad.mit.edu	37	11	64122705	64122705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:64122705C>T	uc001nzy.2	+	25	4183	c.4139C>T	c.(4138-4140)TCC>TTC	p.S1380F	CCDC88B_uc001oaa.2_Missense_Mutation_p.P485S|CCDC88B_uc001oab.1_Missense_Mutation_p.S211F|CCDC88B_uc001oac.2_5'UTR	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	1380					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GCCCAGAGCTCCCTCTGCCTG	0.677													10	6					0	0	1	0	0
PYGM	5837	broad.mit.edu	37	11	64519471	64519471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:64519471C>T	uc001oax.3	-	14	2510	c.1693G>A	c.(1693-1695)GAC>AAC	p.D565N	PYGM_uc001oay.3_Missense_Mutation_p.D477N	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	565					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	ACCTGGATGTCGAAGAGTGAG	0.517													36	46					0	0	1	0	0
PYGM	5837	broad.mit.edu	37	11	64526124	64526124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:64526124G>A	uc001oax.3	-	2	1113	c.296C>T	c.(295-297)ACC>ATC	p.T99I	PYGM_uc001oay.3_Intron	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	99					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	GTTCACCATGGTGTTCTGTAG	0.587													24	26					0	0	1	0	0
SLC22A20	440044	broad.mit.edu	37	11	64981824	64981824	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:64981824C>G	uc010roc.1	+	2	406	c.403C>G	c.(403-405)CTC>GTC	p.L135V	SLC22A20_uc010rob.1_Missense_Mutation_p.L135V	NM_001004326	NP_001004326	A6NK97	S22AK_HUMAN	solute carrier family 22, member 20	135	Extracellular (Potential).				ion transport	integral to membrane	transmembrane transporter activity			central_nervous_system(1)	1						GGCCCGCACTCTCCGAGACCT	0.677													9	15					0	0	1	0	0
DPP3	10072	broad.mit.edu	37	11	66260348	66260350	+	Missense_Mutation	TNP	TCC	CTA	CTA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:66260348_66260350TCC>CTA	uc001oig.1	+	10	1212_1214	c.1150_1152TCC>CTA	c.(1150-1152)TCC>CTA	p.S384L	DPP3_uc001oif.1_Missense_Mutation_p.S384L|DPP3_uc010rpe.1_Missense_Mutation_p.S373L	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	384					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						CTTCGCTGGCTCCGGCATCCCTG	0.611													16	40					0	0	1	0	0
CPT1A	1374	broad.mit.edu	37	11	68560846	68560846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:68560846G>A	uc001oog.3	-	9	1074	c.904C>T	c.(904-906)CCA>TCA	p.P302S	CPT1A_uc001oof.3_Missense_Mutation_p.P302S|CPT1A_uc009ysj.2_Missense_Mutation_p.P302S	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	302	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	GAGCAGAGTGGAATCGTGGAT	0.443													7	5					0	0	1	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68704194	68704194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:68704194C>T	uc001ook.1	+	13	2348	c.2246C>T	c.(2245-2247)TCC>TTC	p.S749F	IGHMBP2_uc001ool.1_Missense_Mutation_p.S373F|IGHMBP2_uc001oom.1_Missense_Mutation_p.S327F	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	749	R3H.|SS DNA-binding (By similarity).				cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TTTCCTCCTTCCCTCAATTCC	0.587													16	17					0	0	1	0	0
FOLR1	2348	broad.mit.edu	37	11	71906375	71906375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:71906375G>A	uc001orz.1	+	4	367	c.229G>A	c.(229-231)GAT>AAT	p.D77N	FOLR1_uc001osa.1_Missense_Mutation_p.D77N|FOLR1_uc001osb.1_Missense_Mutation_p.D77N|FOLR1_uc001osc.1_Missense_Mutation_p.D77N|FOLR1_uc001osd.1_Missense_Mutation_p.D77N	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	77					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						AGCCCATAAGGATGTTTCCTA	0.502													50	74					0	0	1	0	0
FAM168A	23201	broad.mit.edu	37	11	73130926	73130926	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:73130926C>T	uc001otz.1	-	5	576	c.297G>A	c.(295-297)GCG>GCA	p.A99A	FAM168A_uc001oty.1_Silent_p.A90A|FAM168A_uc009ytp.1_Silent_p.A90A	NM_015159	NP_055974	Q92567	F168A_HUMAN	hypothetical protein LOC23201	99											0						TACTGAAAGCCGCAGAGGATG	0.498													14	20					0	0	1	0	0
CCDC89	220388	broad.mit.edu	37	11	85396579	85396579	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:85396579G>A	uc001pau.1	-	1	742	c.595C>T	c.(595-597)CAG>TAG	p.Q199*		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	199	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CAGGCATCCTGAGCACACCTC	0.612													49	60					0	0	1	0	0
CCDC83	220047	broad.mit.edu	37	11	85606383	85606383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:85606383G>A	uc001pbh.1	+	6	1071	c.559G>A	c.(559-561)GAA>AAA	p.E187K	CCDC83_uc001pbg.1_Missense_Mutation_p.E187K|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Missense_Mutation_p.E88K	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	187										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				AATAATCAAGGAAACTTTGTT	0.269													14	16					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92088481	92088481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:92088481G>A	uc001pdj.3	+	1	3220	c.3203G>A	c.(3202-3204)CGA>CAA	p.R1068Q		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1068	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTGACTGCTCGAGATGAAGAC	0.483										TCGA Ovarian(4;0.039)			153	205					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93170756	93170756	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:93170756C>T	uc001pdq.2	+	14	1786	c.1686C>T	c.(1684-1686)TTC>TTT	p.F562F		NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	562	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				CACAGCATTTCCTTCTGGAAG	0.363													27	23					0	0	1	0	0
PIWIL4	143689	broad.mit.edu	37	11	94352941	94352941	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:94352941G>A	uc001pfa.2	+	18	2395	c.2184G>A	c.(2182-2184)GTG>GTA	p.V728V	PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	728	Piwi.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GACTGTCGGTGATTGTGGTCA	0.378													12	9					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	100169958	100169958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:100169958G>A	uc001pga.2	+	20	2789	c.2450G>A	c.(2449-2451)GGA>GAA	p.G817E	CNTN5_uc001pfz.2_Missense_Mutation_p.G817E|CNTN5_uc001pgb.2_Missense_Mutation_p.G743E|CNTN5_uc010ruk.1_Missense_Mutation_p.G88E	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	817	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AGACCCAATGGAACACGTGGC	0.393													8	10					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	100226884	100226884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:100226884C>T	uc001pga.2	+	25	3575	c.3236C>T	c.(3235-3237)TCT>TTT	p.S1079F	CNTN5_uc001pgb.2_Missense_Mutation_p.S1005F|CNTN5_uc010ruk.1_Missense_Mutation_p.S350F	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	1079					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ACCCTTCACTCTCTCTCCACA	0.408													4	5					0	0	1	0	0
MMP27	64066	broad.mit.edu	37	11	102573610	102573610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:102573610G>A	uc001phd.1	-	4	516	c.493C>T	c.(493-495)CAT>TAT	p.H165Y		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	165		Zinc 1 (By similarity).			collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CACCGACCATGGACTGAGATA	0.473													14	32					0	0	1	0	0
MMP10	4319	broad.mit.edu	37	11	102650040	102650040	+	Missense_Mutation	SNP	C	T	T	rs142065601		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:102650040C>T	uc001phg.1	-	3	422	c.400G>A	c.(400-402)GAG>AAG	p.E134K		NM_002425	NP_002416	P09238	MMP10_HUMAN	matrix metalloproteinase 10 preproprotein	134					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			kidney(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_epithelial(12;0.00961)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0303)|Lung(13;0.0828)|all cancers(10;0.116)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0145)		AGAGCTTTCTCAATGGCAGAA	0.408													33	47					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108380663	108380663	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:108380663G>A	uc001pkk.2	-	6	5682	c.5571C>T	c.(5569-5571)TCC>TCT	p.S1857S	EXPH5_uc010rvy.1_Silent_p.S1669S|EXPH5_uc010rvz.1_Silent_p.S1701S|EXPH5_uc010rwa.1_Silent_p.S1781S	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1857					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TTCCATCACAGGAGGGGAGTT	0.453													21	11					0	0	1	0	0
HTR3A	3359	broad.mit.edu	37	11	113860275	113860275	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:113860275G>A	uc010rxb.1	+	8	1574	c.1341G>A	c.(1339-1341)CGG>CGA	p.R447R	HTR3A_uc010rxa.1_Silent_p.R415R|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Silent_p.R394R	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	409	Cytoplasmic (Potential).		R -> Q.		digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	CACCACCTCGGGAGGCCTCGC	0.642													38	36					0	0	1	0	0
FAM55D	54827	broad.mit.edu	37	11	114453255	114453255	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:114453255C>T	uc001ppc.2	-	3	766	c.585G>A	c.(583-585)AGG>AGA	p.R195R	FAM55D_uc001ppd.2_Intron	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	195						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		AGCCTTGGTTCCTTGCACTCC	0.532													9	32					0	0	1	0	0
FAM55D	54827	broad.mit.edu	37	11	114453576	114453576	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:114453576G>A	uc001ppc.2	-	3	445	c.264C>T	c.(262-264)TTC>TTT	p.F88F	FAM55D_uc001ppd.2_5'UTR	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	88						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		TCACGTGGGTGAAAGGTCTGG	0.498													46	66					0	0	1	0	0
FAM55B	120406	broad.mit.edu	37	11	114568808	114568808	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:114568808G>A	uc009yyy.2	+	3	272	c.174G>A	c.(172-174)GGG>GGA	p.G58G		NM_182495	NP_872301	Q96DL1	FA55B_HUMAN	hypothetical protein LOC120406	58						integral to membrane				ovary(1)	1						TGAACCAAGGGAACATCTTCA	0.358													2	1					0	0	1	0	0
APOA5	116519	broad.mit.edu	37	11	116662534	116662534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:116662534G>A	uc001ppr.2	-	1	51	c.43C>T	c.(43-45)CTT>TTT	p.L15F	APOA5_uc009yze.2_Missense_Mutation_p.L15F|APOA5_uc009yzf.2_Missense_Mutation_p.L15F|APOA5_uc009yzg.2_Intron	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	15					acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		CCACCTGAAAGAAGAGCCAGA	0.632											OREG0021366|OREG0003485	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)|type=REGULATORY REGION|Gene=APOA5|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	50	63					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121348826	121348826	+	Splice_Site	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:121348826G>A	uc001pxx.2	+	3	483	c.403_splice	c.e3-1	p.V135_splice		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class						cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CTGTATTCCAGGTGTACGTGT	0.313													23	22					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121481797	121481797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:121481797C>T	uc001pxx.2	+	39	5332	c.5252C>T	c.(5251-5253)CCA>CTA	p.P1751L	SORL1_uc010rzp.1_Missense_Mutation_p.P597L|SORL1_uc010rzq.1_Missense_Mutation_p.P366L	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1751	Extracellular (Potential).|Fibronectin type-III 3.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ATCCCACCACCAGATATCCAC	0.418													20	49					0	0	1	0	0
STT3A	3703	broad.mit.edu	37	11	125479396	125479396	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:125479396C>T	uc001qcd.2	+	10	1139	c.1029C>T	c.(1027-1029)ATC>ATT	p.I343I	STT3A_uc009zbm.2_Silent_p.I343I|STT3A_uc001qce.2_Silent_p.I343I|STT3A_uc010sbg.1_Silent_p.I251I|STT3A_uc009zbn.2_Intron	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1	343	Cytoplasmic (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		AGAACAACATCCCCATCATTG	0.483													34	65					0	0	1	0	0
OPCML	4978	broad.mit.edu	37	11	132399032	132399032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:132399032C>T	uc001qgs.2	-	3	499	c.449G>A	c.(448-450)GGA>GAA	p.G150E	OPCML_uc001qgu.2_Missense_Mutation_p.G143E|OPCML_uc010sck.1_Missense_Mutation_p.G150E|OPCML_uc001qgt.2_Missense_Mutation_p.G150E|OPCML_uc010scl.1_Missense_Mutation_p.G109E	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	150	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity			ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		CACACTGCTTCCCTCATTCAC	0.468													14	17					0	0	1	0	0
IGSF9B	22997	broad.mit.edu	37	11	133816061	133816061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr11:133816061C>T	uc001qgx.3	-	2	388	c.157G>A	c.(157-159)GGA>AGA	p.G53R	IGSF9B_uc001qgz.2_RNA	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	53	Extracellular (Potential).|Ig-like 1.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GGGGGCTGTCCCGTCACTGGG	0.622													6	7					0	0	1	0	0
LRTM2	654429	broad.mit.edu	37	12	1940547	1940547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:1940547C>T	uc001qjt.2	+	4	1320	c.514C>T	c.(514-516)CGC>TGC	p.R172C	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.R172C|LRTM2_uc010sdx.1_Missense_Mutation_p.R172C|LRTM2_uc001qjv.2_Intron	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	172	Extracellular (Potential).|LRR 5.					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			CCTCTCGCTTCGCTCCAACCG	0.627													19	50					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2693743	2693743	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:2693743A>T	uc009zdu.1	+	16	2612	c.2299A>T	c.(2299-2301)AAG>TAG	p.K767*	CACNA1C_uc009zdv.1_Nonsense_Mutation_p.K764*|CACNA1C_uc001qkb.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkc.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qke.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkf.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qjz.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkd.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkg.2_Nonsense_Mutation_p.K767*|CACNA1C_uc009zdw.1_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkh.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkl.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkn.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qko.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkp.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkr.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qku.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkq.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qks.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qkt.2_Nonsense_Mutation_p.K767*|CACNA1C_uc001qka.1_Nonsense_Mutation_p.K302*|CACNA1C_uc001qki.1_Nonsense_Mutation_p.K503*|CACNA1C_uc001qkj.1_Nonsense_Mutation_p.K503*|CACNA1C_uc001qkk.1_Nonsense_Mutation_p.K503*|CACNA1C_uc001qkm.1_Nonsense_Mutation_p.K503*|CACNA1C_uc001qkw.2_Nonsense_Mutation_p.K56*	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	767	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ATCTGCCCaaaaggaggagga	0.433													14	50					0	0	1	0	0
GALNT8	26290	broad.mit.edu	37	12	4853838	4853838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:4853838G>A	uc001qne.1	+	4	924	c.832G>A	c.(832-834)GAT>AAT	p.D278N		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	278	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						CGCCATCTTGGATGCTCACAT	0.493													8	22					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	6030408	6030408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:6030408C>T	uc001qnm.2	-	3	392	c.320G>A	c.(319-321)GGG>GAG	p.G107E		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	111	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CAGGTGCACCCCGCGTTTCCG	0.597													9	26					0	0	1	0	0
CHD4	1108	broad.mit.edu	37	12	6687654	6687655	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:6687654_6687655GG>AA	uc001qpo.2	-	35	5203_5204	c.5039_5040CC>TT	c.(5038-5040)CCC>CTT	p.P1680L	CHD4_uc001qpn.2_Missense_Mutation_p.P1673L|CHD4_uc001qpp.2_Missense_Mutation_p.P1705L|uc001qpq.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1680	Required for interaction with PCNT.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TCAGGTCCTTGGGGGTCTCTCC	0.411													22	28					0	0	1	0	0
C1R	715	broad.mit.edu	37	12	7187929	7187929	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:7187929G>A	uc010sfy.1	-	10	2084	c.2025C>T	c.(2023-2025)TCC>TCT	p.S675S		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	675	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CGATGCCCCAGGACACGATGC	0.587													22	46					0	0	1	0	0
ACSM4	341392	broad.mit.edu	37	12	7469819	7469819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:7469819C>T	uc001qsx.1	+	4	707	c.707C>T	c.(706-708)CCT>CTT	p.P236L		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	236	ATP (By similarity).				fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						ACAGGCTTTCCTAAAATGGCC	0.453													7	9					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7635337	7635337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:7635337G>A	uc001qsz.3	-	14	3277	c.3149C>T	c.(3148-3150)TCC>TTC	p.S1050F	CD163_uc001qta.3_Missense_Mutation_p.S1050F|CD163_uc009zfw.2_Missense_Mutation_p.S1083F	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1050	Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TGCAATAAAGGATGACTGACG	0.423													28	43					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7639223	7639223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:7639223C>T	uc001qsz.3	-	10	2458	c.2330G>A	c.(2329-2331)GGA>GAA	p.G777E	CD163_uc001qta.3_Missense_Mutation_p.G777E|CD163_uc009zfw.2_Missense_Mutation_p.G810E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	777	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GGGCCCTGTTCCTTCCCCAAA	0.542													70	142					0	0	1	0	0
CLEC4C	170482	broad.mit.edu	37	12	7883451	7883451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:7883451G>A	uc001qtg.1	-	5	613	c.439C>T	c.(439-441)CCA>TCA	p.P147S	CLEC4C_uc001qth.1_Missense_Mutation_p.P147S|CLEC4C_uc001qti.1_Missense_Mutation_p.P116S	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	147	Extracellular (Potential).|C-type lectin.				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		CGACCCCCTGGATCTGACAGC	0.408													22	67					0	0	1	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376706	8376706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:8376706C>T	uc001qui.2	-	5	788	c.229G>A	c.(229-231)GAA>AAA	p.E77K	FAM90A1_uc001quh.2_Missense_Mutation_p.E77K	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	77							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TCCTTCCCTTCCTTTTCCCCA	0.552													37	89					0	0	1	0	0
LOC642846	642846	broad.mit.edu	37	12	9453702	9453702	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:9453702C>T	uc010sgp.1	+	10		c.1341C>T			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						GGTGGTGCTGCCCTATCAGAT	0.662													3	10					0	0	1	0	0
KLRK1	22914	broad.mit.edu	37	12	10532318	10532318	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:10532318C>T	uc009zhj.2	-	4	386	c.222G>A	c.(220-222)TGG>TGA	p.W74*	uc001qya.1_RNA|KLRK1_uc001qyb.2_RNA|KLRK1_uc001qyc.2_Nonsense_Mutation_p.W74*|KLRK1_uc009zhk.2_Nonsense_Mutation_p.W74*|KLRK1_uc001qyd.2_Nonsense_Mutation_p.W74*	NM_007360	NP_031386	P26718	NKG2D_HUMAN	NKG2-D type II integral membrane protein	74	Extracellular (Potential).				natural killer cell activation|T cell costimulation	integral to plasma membrane	sugar binding				0						ATACAGCACTCCATATTGTTA	0.338													9	31					0	0	1	0	0
PRB3	5544	broad.mit.edu	37	12	11420803	11420803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:11420803C>T	uc001qzs.2	-	3	418	c.380G>A	c.(379-381)GGA>GAA	p.G127E	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	127	4.|10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|Pro-rich.					extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			CTGGTTTCCTCCTTGTGGGGG	0.647													48	103					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14774015	14774015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:14774015G>A	uc001rcd.2	-	23	2874	c.2737C>T	c.(2737-2739)CCT>TCT	p.P913S		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	913	Cytoplasmic (Potential).|Guanylate cyclase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						GGGAGGCCAGGAAGATGCTCC	0.468													15	35					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14827637	14827637	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:14827637G>A	uc001rcd.2	-	8	1143	c.1006C>T	c.(1006-1008)CTG>TTG	p.L336L	GUCY2C_uc009zhz.2_Silent_p.L336L	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	336	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AATATCTTCAGCATATGTCCA	0.353													28	48					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18876251	18876251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:18876251C>T	uc010sid.1	-	4	552	c.361G>A	c.(361-363)GAA>AAA	p.E121K	PLCZ1_uc001rdv.3_Missense_Mutation_p.E17K|PLCZ1_uc001rdw.3_Intron	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	121					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					ATACCTTCTTCGATAGGCTCG	0.294													4	15					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891712	18891712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:18891712G>A	uc001rdy.2	+	1	668	c.510G>A	c.(508-510)TGG>TGA	p.W170*	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	170					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				ACGGACTTTGGAAATCTAAAT	0.388													11	29					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20803400	20803400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:20803400G>A	uc001reh.1	+	14	2813	c.2791G>A	c.(2791-2793)GAT>AAT	p.D931N		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	931	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TGTTGGAATAGATTGGACCAA	0.308													18	41					0	0	1	0	0
TM7SF3	51768	broad.mit.edu	37	12	27132786	27132786	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:27132786T>G	uc010sjl.1	-	9	1358	c.1120A>C	c.(1120-1122)ATC>CTC	p.I374L		NM_016551	NP_057635	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3 precursor	374	Helical; (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(2)	2	Colorectal(261;0.0847)					AGCATGCAGATCGAGAGGATT	0.483													10	19					0	0	1	0	0
SYT10	341359	broad.mit.edu	37	12	33532878	33532878	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:33532878G>A	uc001rll.1	-	6	1686	c.1389C>T	c.(1387-1389)GTC>GTT	p.V463V	SYT10_uc009zju.1_Silent_p.V273V	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	463	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					ACACTCCTATGACCTCATTGT	0.423													22	58					0	0	1	0	0
SYT10	341359	broad.mit.edu	37	12	33560282	33560282	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:33560282G>A	uc001rll.1	-	3	816	c.519C>T	c.(517-519)TCC>TCT	p.S173S	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	173	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					GTCTTCGGAAGGAACTGTGGC	0.438													22	53					0	0	1	0	0
KIF21A	55605	broad.mit.edu	37	12	39703441	39703441	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:39703441A>G	uc001rly.2	-	33	4370	c.4224T>C	c.(4222-4224)TCT>TCC	p.S1408S	KIF21A_uc001rlv.2_Silent_p.S353S|KIF21A_uc001rlw.2_Silent_p.S678S|KIF21A_uc001rlx.2_Silent_p.S1395S|KIF21A_uc001rlz.2_Silent_p.S1355S|KIF21A_uc010skl.1_Silent_p.S1371S|KIF21A_uc001rlt.2_Silent_p.S28S|KIF21A_uc001rlu.2_Silent_p.S28S	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	1408	WD 2.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				CCTTAATATAAGATGTTGATA	0.388													10	21					0	0	1	0	0
ABCD2	225	broad.mit.edu	37	12	39997802	39997802	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:39997802A>G	uc001rmb.2	-	5	1838	c.1412T>C	c.(1411-1413)GTT>GCT	p.V471A		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	471					fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						CACATCAATAACTTTTCCTGT	0.313													23	46					0	0	1	0	0
ABCD2	225	broad.mit.edu	37	12	39998563	39998563	+	Splice_Site	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:39998563C>T	uc001rmb.2	-	4	1831	c.1405_splice	c.e4+1	p.G469_splice		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2						fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						GAGTTTAATACCTTTAATTGC	0.328													19	38					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43777456	43777456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:43777456C>T	uc010skx.1	-	31	4702	c.4702G>A	c.(4702-4704)GAA>AAA	p.E1568K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1568	TSP type-1 13.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TAGACTATTTCATTCACTTGT	0.368													17	28					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826249	43826249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:43826249C>T	uc010skx.1	-	21	2954	c.2954G>A	c.(2953-2955)GGG>GAG	p.G985E	ADAMTS20_uc001rno.1_Missense_Mutation_p.G139E|ADAMTS20_uc001rnp.1_Missense_Mutation_p.G139E	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	985	TSP type-1 4.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AGACCTTTCCCCTCCTCCACA	0.363													14	54					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457951	45457951	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:45457951C>T	uc001rol.2	-	1		c.1244G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TGAGGAATTTCTCTTTCAGCT	0.423													11	43					0	0	1	0	0
ARID2	196528	broad.mit.edu	37	12	46298784	46298784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:46298784C>T	uc001ros.1	+	21	5431	c.5431C>T	c.(5431-5433)CTT>TTT	p.L1811F	ARID2_uc009zkg.1_Missense_Mutation_p.L1267F|ARID2_uc009zkh.1_Missense_Mutation_p.L1438F|ARID2_uc001rou.1_3'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1811					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TTCCTCCACCCTTGCCAAATG	0.353													8	32					0	0	1	0	0
AMIGO2	347902	broad.mit.edu	37	12	47472390	47472390	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:47472390C>T	uc001rpm.2	-	3	1051	c.396G>A	c.(394-396)GTG>GTA	p.V132V	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Silent_p.V132V|AMIGO2_uc001rpl.2_Silent_p.V132V	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	132	LRR 3.|Extracellular (Potential).				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CAGCATTTTTCACCGTCTTCA	0.433													25	45					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47629749	47629749	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:47629749C>T	uc001rpn.2	+	4	1634	c.903C>T	c.(901-903)CCC>CCT	p.P301P	FAM113B_uc010slj.1_Silent_p.P181P|FAM113B_uc001rpq.2_Silent_p.P301P	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	301	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					cataccgccccctgcttgggt	0.249													10	29					0	0	1	0	0
FMNL3	91010	broad.mit.edu	37	12	50045760	50045760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:50045760G>A	uc001ruv.1	-	14	1793	c.1559C>T	c.(1558-1560)CCA>CTA	p.P520L	FMNL3_uc001ruw.1_Missense_Mutation_p.P469L|FMNL3_uc001rut.1_Missense_Mutation_p.P86L|FMNL3_uc001ruu.1_Missense_Mutation_p.P370L	NM_175736	NP_783863	Q8IVF7	FMNL3_HUMAN	formin-like 3 isoform 1	520	Pro-rich.				actin cytoskeleton organization		actin binding|Rho GTPase binding			breast(2)|pancreas(2)	4						AGCTGGTGGTGGAGGAAGAGG	0.657													4	7					0	0	1	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50187179	50187179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:50187179G>A	uc009zlk.2	-	10	3498	c.3296C>T	c.(3295-3297)TCG>TTG	p.S1099L	NCKAP5L_uc001rvc.3_Missense_Mutation_p.S303L|NCKAP5L_uc001rvb.2_Missense_Mutation_p.S692L	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	1095	Pro-rich.									central_nervous_system(1)	1						GCTGTCCTCCGAGGGCATCTC	0.662													23	52					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50348455	50348455	+	Missense_Mutation	SNP	G	A	A	rs104894341		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:50348455G>A	uc001rvn.2	+	3	658	c.568G>A	c.(568-570)GCT>ACT	p.A190T	AQP2_uc009zll.1_5'Flank	NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	190	Extracellular (Potential).		A -> T (in ANDI; mutant protein does not fold properly and is not functional).		cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						CCGCTCCCTGGCTCCAGCTGT	0.552													29	77					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50349313	50349313	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:50349313G>A	uc001rvn.2	+	4	828	c.738G>A	c.(736-738)TGG>TGA	p.W246*	AQP2_uc009zll.1_5'Flank	NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	246	Cytoplasmic (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						ACACCGATTGGGAGGAGCGCG	0.692													12	14					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51752919	51752919	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:51752919T>C	uc001ryk.2	-	7	1590	c.1365A>G	c.(1363-1365)CAA>CAG	p.Q455Q	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Silent_p.Q455Q|GALNT6_uc001ryj.1_Silent_p.Q20Q	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	455	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						CTCTCACCTCTTGGGCCATCT	0.517													4	319					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51857462	51857462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:51857462G>A	uc001rys.1	+	11	1491	c.1313G>A	c.(1312-1314)GGG>GAG	p.G438E	SLC4A8_uc010sni.1_Missense_Mutation_p.G385E|SLC4A8_uc001rym.2_Missense_Mutation_p.G385E|SLC4A8_uc001ryn.2_Missense_Mutation_p.G385E|SLC4A8_uc001ryo.2_Missense_Mutation_p.G385E|SLC4A8_uc010snj.1_Missense_Mutation_p.G465E|SLC4A8_uc001ryq.3_Missense_Mutation_p.G438E|SLC4A8_uc001ryr.2_Missense_Mutation_p.G438E|SLC4A8_uc010snk.1_Missense_Mutation_p.G385E	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	438	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		GAACCACATGGGGGTCACAGT	0.463													25	98					0	0	1	0	0
KRT80	144501	broad.mit.edu	37	12	52567548	52567548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:52567548C>T	uc001rzx.2	-	5	765	c.667G>A	c.(667-669)GAG>AAG	p.E223K	KRT80_uc001rzw.2_Missense_Mutation_p.E258K|KRT80_uc001rzy.2_Missense_Mutation_p.E223K	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	223	Coil 1B.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		TCCTTCAGCTCCTGACCGGGC	0.647													13	38					0	0	1	0	0
KRT82	3888	broad.mit.edu	37	12	52790747	52790747	+	Missense_Mutation	SNP	G	A	A	rs139209735	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:52790747G>A	uc001sai.1	-	6	1103	c.988C>T	c.(988-990)CGC>TGC	p.R330C		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	330	Coil 2.|Rod.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		TTACGGTTGCGGAGGTTGTCA	0.557													20	30					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53070165	53070165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:53070165C>T	uc001sau.1	-	7	1428	c.1369G>A	c.(1369-1371)GAC>AAC	p.D457N	KRT1_uc001sav.1_Missense_Mutation_p.D457N	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	457	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						CGGGCCAGGTCTTCCTTGGCC	0.592													16	40					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54796786	54796786	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:54796786G>A	uc001sga.2	-	19	2031	c.1963C>T	c.(1963-1965)CTG>TTG	p.L655L		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	655	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						TCCAGCTGCAGGTCAGGCACA	0.522													29	52					0	0	1	0	0
KIAA0748	9840	broad.mit.edu	37	12	55356606	55356606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:55356606G>A	uc001sgn.3	-	9	1186	c.1076C>T	c.(1075-1077)CCA>CTA	p.P359L	KIAA0748_uc001sgl.3_Missense_Mutation_p.P221L|KIAA0748_uc001sgm.3_Missense_Mutation_p.P106L|KIAA0748_uc010spb.1_Missense_Mutation_p.P106L|KIAA0748_uc010spc.1_Missense_Mutation_p.P221L|KIAA0748_uc010spd.1_Missense_Mutation_p.P359L|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	359										ovary(1)|central_nervous_system(1)	2						GAAGACACATGGATAGGGAGA	0.522													4	31					0	0	1	0	0
OR6C4	341418	broad.mit.edu	37	12	55945204	55945204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:55945204C>T	uc010spp.1	+	1	194	c.194C>T	c.(193-195)TCC>TTC	p.S65F		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CGGAATTTCTCCTTCTTAGAA	0.428													47	89					0	0	1	0	0
CS	1431	broad.mit.edu	37	12	56666955	56666955	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:56666955C>T	uc001sks.1	-	11	1504	c.1314G>A	c.(1312-1314)TGG>TGA	p.W438*	CS_uc010sql.1_Nonsense_Mutation_p.W425*|CS_uc001skr.1_Nonsense_Mutation_p.W372*|CS_uc001skt.1_Nonsense_Mutation_p.W393*	NM_004077	NP_004068	O75390	CISY_HUMAN	citrate synthase precursor	438					cellular carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	citrate (Si)-synthase activity				0		Myeloproliferative disorder(1001;0.000374)		BRCA - Breast invasive adenocarcinoma(357;6.17e-07)		AGGCTCGGCTCCAGATGAGCT	0.502													24	37					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57573329	57573329	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:57573329C>T	uc001snd.2	+	29	5422	c.4956C>T	c.(4954-4956)GTC>GTT	p.V1652V		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1652	LDL-receptor class B 13.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TGGAGACAGTCGTCTCTGCAG	0.627													10	28					0	0	1	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57869688	57869688	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:57869688G>T	uc001sod.2	-	13	1645	c.1452C>A	c.(1450-1452)TTC>TTA	p.F484L	ARHGAP9_uc001sny.2_5'Flank|ARHGAP9_uc001snz.2_Missense_Mutation_p.F229L|ARHGAP9_uc001soa.2_Missense_Mutation_p.F83L|ARHGAP9_uc001sob.2_Missense_Mutation_p.F413L|ARHGAP9_uc001soc.2_Missense_Mutation_p.F413L|ARHGAP9_uc001soe.1_Missense_Mutation_p.F492L	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	413	PH.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			ACTGCAGCAGGAACTCGTGGC	0.647													9	17					1.33987e-11	1.35998e-11	1	1	0
AVIL	10677	broad.mit.edu	37	12	58197420	58197420	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:58197420C>T	uc001sqj.1	-	14	1733	c.1704G>A	c.(1702-1704)AAG>AAA	p.K568K	AVIL_uc009zqe.1_Silent_p.K561K|AVIL_uc001sqk.1_Silent_p.K146K	NM_006576	NP_006567	O75366	AVIL_HUMAN	advillin	568	Core (By similarity).				actin filament capping|cilium morphogenesis|cytoskeleton organization|positive regulation of neuron projection development	actin cytoskeleton|axon|cytoplasm	actin binding			central_nervous_system(1)	1	Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					TGGCCAGCTCCTTAGCCATTG	0.587											OREG0021955	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	28					0	0	1	0	0
AVPR1A	552	broad.mit.edu	37	12	63541150	63541150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:63541150C>T	uc001sro.1	-	2	3220	c.1246G>A	c.(1246-1248)GTT>ATT	p.V416I		NM_000706	NP_000697	P37288	V1AR_HUMAN	arginine vasopressin receptor 1A	416	Cytoplasmic (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|generation of precursor metabolites and energy	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity				0			BRCA - Breast invasive adenocarcinoma(9;0.193)	GBM - Glioblastoma multiforme(28;0.0569)	Conivaptan(DB00872)|Desmopressin(DB00035)|Felypressin(DB00093)|Terlipressin(DB02638)|Vasopressin(DB00067)	CAAGTTGAAACAGGAATGAAT	0.383													18	48					0	0	1	0	0
SRGAP1	57522	broad.mit.edu	37	12	64472794	64472794	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:64472794C>T	uc010ssp.1	+	9	1277	c.1221C>T	c.(1219-1221)TCC>TCT	p.S407S	SRGAP1_uc001srt.2_Silent_p.S407S|SRGAP1_uc001srv.2_Silent_p.S367S	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	407					axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		ACAGTCGTTCCACAGAATCAG	0.473													16	32					0	0	1	0	0
XPOT	11260	broad.mit.edu	37	12	64825499	64825499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:64825499C>T	uc001ssb.2	+	18	2584	c.2158C>T	c.(2158-2160)CTT>TTT	p.L720F		NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	720	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		GGAAGAAGTTCTTCCGTTCAT	0.418													7	39					0	0	1	0	0
TBK1	29110	broad.mit.edu	37	12	64849723	64849723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:64849723C>T	uc001ssc.1	+	2	135	c.73C>T	c.(73-75)CGT>TGT	p.R25C		NM_013254	NP_037386	Q9UHD2	TBK1_HUMAN	TANK-binding kinase 1	25	Protein kinase.				I-kappaB kinase/NF-kappaB cascade|innate immune response|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|large_intestine(1)|breast(1)	5				GBM - Glioblastoma multiforme(28;0.0386)		AAATGTCTTTCGTGGAAGACA	0.388													6	12					0	0	1	0	0
RPSAP52	204010	broad.mit.edu	37	12	66152054	66152054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:66152054C>T	uc001sso.2	-	2	890	c.469G>A	c.(469-471)GAA>AAA	p.E157K		NR_026825				SubName: Full=Putative uncharacterized protein RPSAP52;												0						TCTGCAACTTCAGGCTGAGTA	0.502													7	9					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70049370	70049370	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:70049370T>A	uc001svg.2	-	10	1551	c.1324A>T	c.(1324-1326)AAC>TAC	p.N442Y	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.N229Y|BEST3_uc010stm.1_Missense_Mutation_p.N336Y	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	442	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CTGGGGGGGTTTCTTGAGGGC	0.582													26	61					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70980852	70980852	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:70980852T>A	uc001swb.3	-	7	1622	c.1592A>T	c.(1591-1593)TAC>TTC	p.Y531F	PTPRB_uc010sto.1_Missense_Mutation_p.Y531F|PTPRB_uc010stp.1_Missense_Mutation_p.Y441F|PTPRB_uc001swc.3_Missense_Mutation_p.Y749F|PTPRB_uc001swa.3_Missense_Mutation_p.Y749F|PTPRB_uc001swd.3_Missense_Mutation_p.Y748F|PTPRB_uc009zrr.1_Missense_Mutation_p.Y628F	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	531	Fibronectin type-III 6.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGTAGCCATGTATTTTCGTCC	0.378													28	55					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	73012798	73012798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:73012798G>A	uc001sxa.2	+	13	2344	c.2314G>A	c.(2314-2316)GAA>AAA	p.E772K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	772	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GGACCGCATGGAAAACTACAA	0.333													8	39					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	73015526	73015526	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:73015526G>A	uc001sxa.2	+	15	2565	c.2535G>A	c.(2533-2535)AGG>AGA	p.R845R		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	845	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						CCAGCAACAGGAACAGGTAAA	0.393													9	17					0	0	1	0	0
BBS10	79738	broad.mit.edu	37	12	76740304	76740304	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:76740304T>C	uc001syd.1	-	2	1545	c.1461A>G	c.(1459-1461)TTA>TTG	p.L487L		NM_024685	NP_078961	Q8TAM1	BBS10_HUMAN	Bardet-Biedl syndrome 10	487					cellular protein metabolic process|nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	cilium	ATP binding			ovary(1)|skin(1)	2						AATGTACTTTTAAATATGTTT	0.368									Bardet-Biedl_syndrome				24	61					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	81741409	81741409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:81741409G>A	uc001szo.1	-	18	2296	c.2135C>T	c.(2134-2136)TCG>TTG	p.S712L	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_Intron	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	638										ovary(3)|lung(2)|pancreas(1)	6						ACTGGCCAGCGATGAAGCTGT	0.532													50	106					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85450336	85450336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:85450336G>A	uc001tac.2	+	8	1876	c.1765G>A	c.(1765-1767)GAA>AAA	p.E589K	LRRIQ1_uc001tab.1_Missense_Mutation_p.E589K|LRRIQ1_uc001taa.1_Missense_Mutation_p.E564K	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	589										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		AGTAGAAAAAGAAGAGATACA	0.289													4	15					0	0	1	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373909	86373909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:86373909G>A	uc001tai.3	-	8	1845	c.595C>T	c.(595-597)CGT>TGT	p.R199C	MGAT4C_uc001tal.3_Missense_Mutation_p.R199C|MGAT4C_uc001taj.3_Missense_Mutation_p.R199C|MGAT4C_uc001tak.3_Missense_Mutation_p.R199C|MGAT4C_uc010sum.1_Missense_Mutation_p.R223C|MGAT4C_uc001tah.3_Missense_Mutation_p.R199C	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	199	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TGCTTGGAACGAAATTTGACT	0.338													20	54					0	0	1	0	0
MGAT4C	25834	broad.mit.edu	37	12	86374166	86374166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:86374166C>T	uc001tai.3	-	8	1588	c.338G>A	c.(337-339)GGA>GAA	p.G113E	MGAT4C_uc001tal.3_Missense_Mutation_p.G113E|MGAT4C_uc001taj.3_Missense_Mutation_p.G113E|MGAT4C_uc001tak.3_Missense_Mutation_p.G113E|MGAT4C_uc010sum.1_Missense_Mutation_p.G137E|MGAT4C_uc001tah.3_Missense_Mutation_p.G113E	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	113	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TAAATAGTTTCCTTTTTTTCG	0.328													14	20					0	0	1	0	0
C12orf12	196477	broad.mit.edu	37	12	91348214	91348214	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:91348214G>A	uc001tbj.2	-	1	740	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	102										central_nervous_system(1)|pancreas(1)	2						CCGGGCAGGGGAATTTCCAGA	0.642													10	16					0	0	1	0	0
BTG1	694	broad.mit.edu	37	12	92537991	92537991	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:92537991G>A	uc001tby.3	-	2	743	c.381C>T	c.(379-381)GCC>GCT	p.A127A	BTG1_uc001tbv.1_5'Flank|BTG1_uc001tbw.1_5'Flank|BTG1_uc001tbx.1_5'Flank|BTG1_uc009zss.1_5'Flank|uc001tca.2_5'Flank	NM_001731	NP_001722	P62324	BTG1_HUMAN	B-cell translocation protein 1	127					cell migration|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of endothelial cell differentiation|positive regulation of myoblast differentiation|regulation of apoptosis|regulation of transcription, DNA-dependent	cytoplasm|nucleus	kinase binding|transcription cofactor activity				0		Acute lymphoblastic leukemia(6;3.02e-13)|all_hematologic(6;4.32e-09)				CTGCTGGTGAGGCTTCATACA	0.512			T	MYC	BCLL						OREG0022024	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	75					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	95228418	95228418	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:95228418G>A	uc001tdk.2	+	1		c.245G>A								Homo sapiens mRNA for keratin 19, partial cds, isolate:K19-141.																		GCATGAGGAGGAAATCAATGC	0.557													7	12					0	0	1	0	0
ELK3	2004	broad.mit.edu	37	12	96641178	96641179	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:96641178_96641179CC>TA	uc001teo.1	+	3	947_948	c.668_669CC>TA	c.(667-669)TCC>TTA	p.S223L		NM_005230	NP_005221	P41970	ELK3_HUMAN	ELK3 protein	223					negative regulation of transcription, DNA-dependent|signal transduction	mitochondrion	protein binding|purine-rich negative regulatory element binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	all_cancers(2;0.00173)					GCCAAGATCTCCTCTTTAATGT	0.619													33	80					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97147538	97147538	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:97147538C>G	uc001tet.1	+	23	3055	c.2977C>G	c.(2977-2979)CAA>GAA	p.Q993E		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	993										skin(6)|ovary(1)	7						AGTGGCCAAGCAAGTATATTA	0.428													12	56					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97150267	97150267	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:97150267G>A	uc001tet.1	+	24	3225	c.3147G>A	c.(3145-3147)GAG>GAA	p.E1049E		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1049										skin(6)|ovary(1)	7						TAATGGAAGAGAAATCTCCAA	0.308													5	22					0	0	1	0	0
APAF1	317	broad.mit.edu	37	12	99106141	99106141	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:99106141T>C	uc001tfz.2	+	21	3463	c.2886T>C	c.(2884-2886)GCT>GCC	p.A962A	APAF1_uc001tfy.2_Silent_p.A951A|APAF1_uc001tga.2_Silent_p.A908A|APAF1_uc001tgb.2_Silent_p.A919A|APAF1_uc001tgc.2_Intron|APAF1_uc009zto.2_Silent_p.A328A	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	962	WD 8.				activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	TGACTGAAGCTCAAGTTAGCT	0.378													8	25					0	0	1	0	0
ANKS1B	56899	broad.mit.edu	37	12	99548100	99548100	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:99548100C>T	uc001tge.1	-	15	2910	c.2493G>A	c.(2491-2493)CTG>CTA	p.L831L	ANKS1B_uc001tgf.1_Silent_p.L407L|ANKS1B_uc001tgk.2_Silent_p.L128L|ANKS1B_uc001tgd.1_Silent_p.L57L|ANKS1B_uc001tgi.2_Silent_p.L57L|ANKS1B_uc009ztr.2_Silent_p.L57L|ANKS1B_uc001tgj.2_Silent_p.L57L|ANKS1B_uc001tgg.3_5'UTR|ANKS1B_uc010svg.1_Silent_p.L26L|ANKS1B_uc009zts.1_Silent_p.L57L|ANKS1B_uc001tgm.1_Silent_p.L57L	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	831	SAM 1.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CATTAGCCATCAGGTGGTTCT	0.478													15	41					0	0	1	0	0
SLC17A8	246213	broad.mit.edu	37	12	100813679	100813679	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:100813679G>A	uc010svi.1	+	12	1825	c.1512G>A	c.(1510-1512)GGG>GGA	p.G504G	SLC17A8_uc009ztx.2_Silent_p.G454G	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	504	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TTGCTTCTGGGGAGAAACAGG	0.468													22	53					0	0	1	0	0
SLC17A8	246213	broad.mit.edu	37	12	100813733	100813733	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:100813733C>T	uc010svi.1	+	12	1879	c.1566C>T	c.(1564-1566)ATC>ATT	p.I522I	SLC17A8_uc009ztx.2_Silent_p.I472I	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	522	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						AATGTGGAATCATTGACCAGG	0.473													13	31					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101381320	101381320	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:101381320C>T	uc010svm.1	+	8	1178	c.606C>T	c.(604-606)ATC>ATT	p.I202I	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Silent_p.I167I|ANO4_uc001thx.2_Silent_p.I202I	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	202	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ACCACAGGATCGATAAACAAA	0.498										HNSCC(74;0.22)	OREG0022059	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	128	274					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101581202	101581202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:101581202C>T	uc001thz.3	-	7	1315	c.925G>A	c.(925-927)GAT>AAT	p.D309N		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	309	Extracellular (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						GTCCAAGGATCACAGTCATGG	0.433													11	25					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104118760	104118760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:104118760G>A	uc001tjw.2	+	45	4877	c.4691G>A	c.(4690-4692)GGC>GAC	p.G1564D	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1564	Extracellular (Potential).|EGF-like 14.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CAGAAAAATGGCGGCTGTAGT	0.463													86	185					0	0	1	0	0
POLR3B	55703	broad.mit.edu	37	12	106820975	106820975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:106820975C>T	uc001tlp.2	+	13	1324	c.1102C>T	c.(1102-1104)CTT>TTT	p.L368F	POLR3B_uc001tlq.2_Missense_Mutation_p.L310F	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	368					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						TTTTTTTTAGCTTTTATCTCT	0.274													3	0					0	0	1	0	0
TMEM119	338773	broad.mit.edu	37	12	108985963	108985963	+	Missense_Mutation	SNP	G	A	A	rs146247958		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:108985963G>A	uc001tng.2	-	2	360	c.197C>T	c.(196-198)TCG>TTG	p.S66L	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	66	Extracellular (Potential).					integral to membrane				ovary(1)	1						GGGCCCCATCGATGTGGGGCT	0.672													13	41					0	0	1	0	0
TRPV4	59341	broad.mit.edu	37	12	110252501	110252501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:110252501G>A	uc001tpj.1	-	1	196	c.101C>T	c.(100-102)TCC>TTC	p.S34F	TRPV4_uc001tpg.1_Intron|TRPV4_uc001tph.1_Missense_Mutation_p.S34F|TRPV4_uc001tpi.1_Missense_Mutation_p.S34F|TRPV4_uc001tpk.1_Missense_Mutation_p.S34F|TRPV4_uc001tpl.1_Missense_Mutation_p.S34F	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	34	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GGCCAGGGAGGAGAGAGGAAA	0.572													6	9					0	0	1	0	0
RPH3A	22895	broad.mit.edu	37	12	113321148	113321148	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:113321148G>A	uc010syl.1	+	16	1739	c.1377G>A	c.(1375-1377)TGG>TGA	p.W459*	RPH3A_uc001ttz.2_Nonsense_Mutation_p.W459*|RPH3A_uc001tty.2_Nonsense_Mutation_p.W455*|RPH3A_uc009zwe.1_Nonsense_Mutation_p.W455*|RPH3A_uc010sym.1_Nonsense_Mutation_p.W410*|RPH3A_uc001tua.2_Nonsense_Mutation_p.W219*	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	459	C2 1.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		ACCCCATCTGGAATGAGACCC	0.567													7	25					0	0	1	0	0
FBXO21	23014	broad.mit.edu	37	12	117627100	117627100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:117627100G>A	uc001twk.2	-	2	346	c.307C>T	c.(307-309)CGG>TGG	p.R103W	FBXO21_uc001twj.2_Missense_Mutation_p.R103W|FBXO21_uc009zwq.2_Missense_Mutation_p.R103W	NM_033624	NP_296373	O94952	FBX21_HUMAN	F-box only protein 21 isoform 1	103					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			kidney(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0291)		GCTTTTTGCCGAACTTTATAC	0.478													29	72					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117768438	117768438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:117768438G>A	uc001twm.1	-	2	1123	c.437C>T	c.(436-438)CCC>CTC	p.P146L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	146	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CACTGCCAGGGGCTGTTCTTT	0.682													27	65					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119978481	119978481	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:119978481G>A	uc001txe.2	+	14	2079	c.1614G>A	c.(1612-1614)CGG>CGA	p.R538R	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	538										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		TGCAGAGCCGGATCAACATAC	0.522													16	77					0	0	1	0	0
ACADS	35	broad.mit.edu	37	12	121177141	121177141	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:121177141C>G	uc001tza.3	+	10	1247	c.1129C>G	c.(1129-1131)CCG>GCG	p.P377A	ACADS_uc001tzb.3_Missense_Mutation_p.P258A	NM_000017	NP_000008	P16219	ACADS_HUMAN	short-chain acyl-CoA dehydrogenase precursor	377						mitochondrial matrix	butyryl-CoA dehydrogenase activity			central_nervous_system(2)	2	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)	Lung NSC(355;0.163)			NADH(DB00157)	GACAGAGATGCCGGCAGAGCG	0.632													124	263					0	0	1	0	0
HNF1A	6927	broad.mit.edu	37	12	121416631	121416631	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:121416631G>A	uc001tzg.2	+	1	83	c.60G>A	c.(58-60)GGG>GGA	p.G20G	HNF1A_uc001tze.1_Silent_p.G20G|HNF1A_uc001tzf.2_Silent_p.G20G|HNF1A_uc010szn.1_Silent_p.G20G	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	20	Dimerization.		G -> R (in MODY3; abolishes interaction with PCBD1 and DNA).		glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding	p.L21fs*1(1)|p.?(1)		liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCGAGTCAGGGCTGAGCAAAG	0.692									Hepatic_Adenoma_Familial_Clustering_of				117	283					0	0	1	0	0
OASL	8638	broad.mit.edu	37	12	121458471	121458471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:121458471C>T	uc001tzj.1	-	6	1444	c.1438G>A	c.(1438-1440)GGC>AGC	p.G480S	OASL_uc001tzk.1_3'UTR	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	480	Ubiquitin-like 2.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AGGACTTGGCCTTGGAATTCC	0.537													109	267					0	0	1	0	0
GTF2H3	2967	broad.mit.edu	37	12	124139515	124139515	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:124139515C>T	uc001ufo.1	+	8	557	c.531C>T	c.(529-531)TTC>TTT	p.F177F	GTF2H3_uc010tau.1_Silent_p.F136F	NM_001516	NP_001507	Q13889	TF2H3_HUMAN	general transcription factor IIH, polypeptide 3,	177					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	core TFIIH complex|holo TFIIH complex	damaged DNA binding|metal ion binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|translation factor activity, nucleic acid binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.1e-05)|Epithelial(86;0.000388)|all cancers(50;0.00362)		ATATGAACTTCATGAATGTCA	0.413								NER					10	32					0	0	1	0	0
ATP6V0A2	23545	broad.mit.edu	37	12	124221681	124221681	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:124221681C>T	uc001ufr.2	+	9	1149	c.901C>T	c.(901-903)CAG>TAG	p.Q301*	ATP6V0A2_uc001ufq.1_Nonsense_Mutation_p.Q301*	NM_012463	NP_036595	Q9Y487	VPP2_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	301	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|immune response|insulin receptor signaling pathway|transferrin transport	endosome membrane|integral to membrane|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000224)|Epithelial(86;0.000625)|all cancers(50;0.00775)		CCGTGTGATCCAGGTGAAGAA	0.517													33	69					0	0	1	0	0
NCOR2	9612	broad.mit.edu	37	12	124824657	124824657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:124824657G>A	uc010tay.1	-	39	5768	c.5612C>T	c.(5611-5613)TCC>TTC	p.S1871F	NCOR2_uc010taz.1_Missense_Mutation_p.S1855F|NCOR2_uc010tax.1_5'UTR	NM_006312	NP_006303	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 1	1872					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GGTCCGAGGGGAGATGGGCGA	0.493													22	43					0	0	1	0	0
NCOR2	9612	broad.mit.edu	37	12	124824947	124824947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:124824947G>A	uc010tba.1	-	36	5522	c.5405C>T	c.(5404-5406)TCC>TTC	p.S1802F	NCOR2_uc010tay.1_Missense_Mutation_p.S1801F|NCOR2_uc010taz.1_Missense_Mutation_p.S1785F|NCOR2_uc010tbb.1_Missense_Mutation_p.S1794F|NCOR2_uc010tbc.1_Missense_Mutation_p.S1784F|NCOR2_uc010tax.1_5'Flank	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1802					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CTCCCGCTCGGACGAGGACGT	0.622													12	20					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126128809	126128809	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:126128809C>A	uc001uhe.1	+	6	1618	c.1610C>A	c.(1609-1611)CCG>CAG	p.P537Q	TMEM132B_uc001uhf.1_Missense_Mutation_p.P49Q	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	537	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TGGAGGATCCCGGTTGCTGCC	0.572													14	28					6.31663e-08	6.38671e-08	1	1	0
ZNF10	7556	broad.mit.edu	37	12	133732654	133732654	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:133732654C>T	uc009zzb.2	+	5	1269	c.822C>T	c.(820-822)TTC>TTT	p.F274F	ZNF268_uc010tbv.1_Intron|ZNF10_uc001ulq.2_Silent_p.F274F	NM_015394	NP_056209	P21506	ZNF10_HUMAN	zinc finger protein 10	274	C2H2-type 2.			Missing (in Ref. 1).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;1.28e-06)|all_epithelial(31;0.0051)|Lung NSC(355;0.00948)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		GAAAATTCTTCAGCTGGCGCT	0.403													19	41					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19435649	19435649	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:19435649C>T	uc010tcj.1	-	1		c.10461G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TCTATAAAATCCTACCTGACT	0.194													19	46					0	0	1	0	0
EFHA1	221154	broad.mit.edu	37	13	22096766	22096766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:22096766G>A	uc001uof.2	-	5	512	c.490C>T	c.(490-492)CTT>TTT	p.L164F		NM_152726	NP_689939	Q8IYU8	EFHA1_HUMAN	EF-hand domain family, member A1	164							calcium ion binding				0		all_cancers(29;1.24e-15)|all_epithelial(30;5.4e-14)|all_lung(29;2.04e-13)|Lung SC(185;0.0367)		all cancers(112;0.000171)|Epithelial(112;0.000398)|OV - Ovarian serous cystadenocarcinoma(117;0.00641)|Lung(94;0.189)		AGCAAGAAAAGATACTCGGTA	0.323													13	30					0	0	1	0	0
PARP4	143	broad.mit.edu	37	13	25029162	25029162	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:25029162G>A	uc001upl.2	-	22	2857	c.2751C>T	c.(2749-2751)TTC>TTT	p.F917F	PARP4_uc010tdc.1_Silent_p.F917F	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	917	VWFA.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		CACCTGTGCCGAACTGGATAA	0.532													48	136					0	0	1	0	0
WASF3	10810	broad.mit.edu	37	13	27256917	27256917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:27256917C>T	uc001uqv.2	+	9	1382	c.1157C>T	c.(1156-1158)CCC>CTC	p.P386L	WASF3_uc001uqw.2_Missense_Mutation_p.P383L	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	386					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CCTCACCCACCCTCCACCGGG	0.692													15	53					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28896933	28896933	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:28896933C>A	uc001usb.3	-	21	3232	c.2947G>T	c.(2947-2949)GAG>TAG	p.E983*	FLT1_uc010aap.2_5'Flank|FLT1_uc010aaq.2_Nonsense_Mutation_p.E108*|FLT1_uc001usa.3_Nonsense_Mutation_p.E201*	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	983	Cytoplasmic (Potential).|Protein kinase.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	CTACCCTCCTCTTCCTCAACA	0.408													37	100					2.66277e-13	2.71193e-13	1	1	0
MTUS2	23281	broad.mit.edu	37	13	30075288	30075288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:30075288G>A	uc001usl.3	+	13	3941	c.3883G>A	c.(3883-3885)GAA>AAA	p.E1295K	MTUS2_uc001usm.3_Missense_Mutation_p.E264K|MTUS2_uc010aau.2_Missense_Mutation_p.E174K|MTUS2_uc010tdq.1_Missense_Mutation_p.E47K	NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1285	Potential.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						ACAGCAGAACGAAGACCTCAA	0.428													19	42					0	0	1	0	0
SLC7A1	6541	broad.mit.edu	37	13	30091756	30091756	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:30091756A>G	uc001uso.2	-	10	1851	c.1464T>C	c.(1462-1464)CCT>CCC	p.P488P		NM_003045	NP_003036	P30825	CTR1_HUMAN	solute carrier family 7 (cationic amino acid	488	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	receptor activity				0		Lung SC(185;0.0257)|Breast(139;0.238)		all cancers(112;0.0148)|OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(112;0.0875)|GBM - Glioblastoma multiforme(144;0.179)	L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	AGATTTTGGAAGGCTCCATGT	0.458													38	104					0	0	1	0	0
ALOX5AP	241	broad.mit.edu	37	13	31338126	31338126	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:31338126C>T	uc001utf.1	+	5	443	c.369C>T	c.(367-369)TTC>TTT	p.F123F	ALOX5AP_uc010tdr.1_Silent_p.F180F	NM_001629	NP_001620	P20292	AL5AP_HUMAN	arachidonate 5-lipoxygenase-activating protein	123	Inhibitor binding.|Helical.			F->A: Decreased affinity for the inhibitor MK-591.	cellular response to calcium ion|leukotriene biosynthetic process|leukotriene production involved in inflammatory response|protein homotrimerization	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	arachidonic acid binding|protein N-terminus binding				0		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0187)|Epithelial(112;0.0803)|OV - Ovarian serous cystadenocarcinoma(117;0.0864)		TCTTCCTGTTCCTCATGTCCG	0.433													51	118					0	0	1	0	0
RXFP2	122042	broad.mit.edu	37	13	32332520	32332520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:32332520G>A	uc001utt.2	+	2	291	c.220G>A	c.(220-222)GGG>AGG	p.G74R	RXFP2_uc010aba.2_Missense_Mutation_p.G57R	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	74	Extracellular (Potential).|LDL-receptor class A.					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		CTGTGGGAACGGGGCGGACGA	0.512													34	89					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33635583	33635583	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:33635583C>T	uc001uus.2	+	4	2375	c.2367C>T	c.(2365-2367)TTC>TTT	p.F789F	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	789	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		TTCCTTATTTCACTGAAGATG	0.413													7	31					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33638239	33638239	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:33638239C>T	uc001uus.2	+	5	2963	c.2955C>T	c.(2953-2955)TTC>TTT	p.F985F		NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	985	Helical; (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		TACTGGCTTTCATAGCTTTTC	0.373													24	40					0	0	1	0	0
STARD13	90627	broad.mit.edu	37	13	33700223	33700223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:33700223C>T	uc001uuw.2	-	7	2203	c.2077G>A	c.(2077-2079)GAT>AAT	p.D693N	STARD13_uc001uuu.2_Missense_Mutation_p.D685N|STARD13_uc001uuv.2_Missense_Mutation_p.D575N|STARD13_uc001uux.2_Missense_Mutation_p.D658N|STARD13_uc010tec.1_RNA	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	693	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		CCTACCTGATCGAGGCAGTTG	0.552													27	54					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38320349	38320349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:38320349G>A	uc001uws.2	-	3	857	c.622C>T	c.(622-624)CTC>TTC	p.L208F	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.L208F|TRPC4_uc010tey.1_Missense_Mutation_p.L208F|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Missense_Mutation_p.L208F|TRPC4_uc010aby.2_Missense_Mutation_p.L208F	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	208	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		AGTGCAATGAGAGAGGGACTG	0.498													12	51					0	0	1	0	0
SPERT	220082	broad.mit.edu	37	13	46287907	46287908	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:46287907_46287908CC>TT	uc001van.1	+	3	827_828	c.747_748CC>TT	c.(745-750)CTCCTC>CTTTTC	p.L250F	SPERT_uc001vao.2_Missense_Mutation_p.L214F	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	250	Potential.					cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		CCCTGCAGCTCCTCCGGGAGGA	0.673													5	16					0	0	1	0	0
KLF5	688	broad.mit.edu	37	13	73636401	73636402	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:73636401_73636402CC>TT	uc001vje.2	+	2	988_989	c.664_665CC>TT	c.(664-666)CCT>TTT	p.P222F	KLF5_uc001vjd.2_Missense_Mutation_p.P131F	NM_001730	NP_001721	Q13887	KLF5_HUMAN	Kruppel-like factor 5	222					transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|pancreas(1)	3		Prostate(6;0.00187)|Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.0011)		TCTTTCTGTCCCTACCCAGCAG	0.455													28	57					0	0	1	0	0
LOC647288	647288	broad.mit.edu	37	13	75814283	75814283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:75814283G>A	uc010ths.1	-	1	235	c.194C>T	c.(193-195)TCG>TTG	p.S65L		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						ACTCCTAACCGATCTAAAACT	0.378													18	61					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77651477	77651477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:77651477G>A	uc001vkf.2	-	68	11507	c.11416C>T	c.(11416-11418)CCA>TCA	p.P3806S	MYCBP2_uc010aev.2_Missense_Mutation_p.P3210S|MYCBP2_uc001vke.2_Missense_Mutation_p.P426S	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3806	DOC.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TCCCCTCCTGGAAGTTCACTT	0.433													21	45					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92560288	92560288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:92560288G>A	uc010tif.1	+	6	1744	c.1378G>A	c.(1378-1380)GAT>AAT	p.D460N		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	460						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TCAGATTATTGATAAACTGAA	0.328													7	29					0	0	1	0	0
FARP1	10160	broad.mit.edu	37	13	99047564	99047565	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:99047564_99047565GG>AA	uc001vnj.2	+	13	1584_1585	c.1248_1249GG>AA	c.(1246-1251)AAGGTT>AAAATT	p.V417I	FARP1_uc001vnh.2_Missense_Mutation_p.V417I	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	417					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			AGGAACCGAAGGTTTCCGCCGG	0.688													21	33					0	0	1	0	0
TM9SF2	9375	broad.mit.edu	37	13	100190108	100190108	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:100190108A>G	uc001voj.1	+	6	840	c.707A>G	c.(706-708)GAA>GGA	p.E236G	TM9SF2_uc010afz.1_Intron	NM_004800	NP_004791	Q99805	TM9S2_HUMAN	transmembrane 9 superfamily member 2 precursor	236	Lumenal (Potential).				transport	endosome membrane|integral to plasma membrane				ovary(1)	1	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.218)					GCTAAACTTGAACCGAAAAGG	0.318													3	18					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103698508	103698508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:103698508C>T	uc001vpy.3	-	6	1619	c.1022G>A	c.(1021-1023)GGA>GAA	p.G341E		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	341	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TTGAAATCCTCCATTTGCCTT	0.363													13	44					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103703631	103703631	+	Missense_Mutation	SNP	C	T	T	rs138811603		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:103703631C>T	uc001vpy.3	-	4	1334	c.737G>A	c.(736-738)AGA>AAA	p.R246K		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	246	Extracellular (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ACCAGCAATTCTAGCCAGAAG	0.368													18	43					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103703705	103703705	+	Silent	SNP	G	A	A	rs140751551		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:103703705G>A	uc001vpy.3	-	4	1260	c.663C>T	c.(661-663)ATC>ATT	p.I221I		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	221	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity	p.I221I(1)		ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TGGGAGCAATGATCCAGGCGC	0.478													21	46					0	0	1	0	0
LIG4	3981	broad.mit.edu	37	13	108861588	108861588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:108861588C>T	uc001vqn.2	-	2	2302	c.2029G>A	c.(2029-2031)GAC>AAC	p.D677N	LIG4_uc001vqo.2_Missense_Mutation_p.D677N|LIG4_uc010agg.1_Missense_Mutation_p.D610N|LIG4_uc010agf.2_Missense_Mutation_p.D677N|LIG4_uc001vqp.2_Missense_Mutation_p.D677N	NM_002312	NP_002303	P49917	DNLI4_HUMAN	DNA ligase IV	677	BRCT 1.				cell cycle|cell division|cell proliferation|central nervous system development|chromosome organization|DNA ligation involved in DNA recombination|DNA ligation involved in DNA repair|DNA replication|double-strand break repair via nonhomologous end joining|in utero embryonic development|initiation of viral infection|isotype switching|negative regulation of neuron apoptosis|neuron apoptosis|nucleotide-excision repair, DNA gap filling|positive regulation of fibroblast proliferation|positive regulation of neurogenesis|pro-B cell differentiation|provirus integration|response to gamma radiation|response to X-ray|single strand break repair|somatic stem cell maintenance|T cell differentiation in thymus|T cell receptor V(D)J recombination	condensed chromosome|cytoplasm|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|focal adhesion|nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding|protein C-terminus binding				0	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					TTCTCCAGGTCAGGCTTTGGC	0.388								NHEJ					17	33					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109445940	109445940	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:109445940A>T	uc001vqt.1	+	6	753	c.627A>T	c.(625-627)TTA>TTT	p.L209F	MYO16_uc010agk.1_Missense_Mutation_p.L231F|MYO16_uc001vqu.1_Missense_Mutation_p.L9F	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	209	ANK 5.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			AACACTTCTTATCATCTGGAG	0.388													15	39					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111156235	111156235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:111156235C>T	uc001vqx.2	+	44	4469	c.4180C>T	c.(4180-4182)CCC>TCC	p.P1394S		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1394	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			TGCAGGAATCCCCCAGAAGAT	0.682													20	51					0	0	1	0	0
PCID2	55795	broad.mit.edu	37	13	113835476	113835476	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:113835476G>A	uc010tju.1	-	10	835	c.754C>T	c.(754-756)CTG>TTG	p.L252L	PCID2_uc001vtb.2_Silent_p.L85L|PCID2_uc010tjv.1_Silent_p.L252L|PCID2_uc010tjw.1_Silent_p.L252L|PCID2_uc001vte.2_Silent_p.L145L|PCID2_uc001vtd.2_Silent_p.L145L|PCID2_uc001vtf.2_Silent_p.L145L	NM_001127203	NP_001120675	Q5JVF3	PCID2_HUMAN	PCI domain containing 2	252					negative regulation of apoptosis|negative regulation of cysteine-type endopeptidase activity|positive regulation of mitotic cell cycle spindle assembly checkpoint|positive regulation of transcription, DNA-dependent|regulation of mRNA stability|spleen development		protein binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.216)|all_epithelial(44;0.234)	all cancers(43;0.104)			AAATAGATCAGAATCATCCTT	0.413													6	36					0	0	1	0	0
PCID2	55795	broad.mit.edu	37	13	113838775	113838775	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr13:113838775G>A	uc010tju.1	-	9	651	c.570C>T	c.(568-570)CCC>CCT	p.P190P	PCID2_uc001vtb.2_Silent_p.P23P|PCID2_uc010tjv.1_Silent_p.P190P|PCID2_uc010tjw.1_Silent_p.P190P|PCID2_uc001vte.2_Silent_p.P83P|PCID2_uc001vtd.2_Silent_p.P83P|PCID2_uc001vtf.2_Silent_p.P83P	NM_001127203	NP_001120675	Q5JVF3	PCID2_HUMAN	PCI domain containing 2	190					negative regulation of apoptosis|negative regulation of cysteine-type endopeptidase activity|positive regulation of mitotic cell cycle spindle assembly checkpoint|positive regulation of transcription, DNA-dependent|regulation of mRNA stability|spleen development		protein binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.216)|all_epithelial(44;0.234)	all cancers(43;0.104)			CTCTAATTAGGGGTTTACATA	0.338													8	20					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19553664	19553664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:19553664C>T	uc001vuz.1	+	1	300	c.248C>T	c.(247-249)TCT>TTT	p.S83F	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	83										ovary(1)	1						GTGGGCACTTCTGGAGACCAC	0.592													5	209					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19553712	19553712	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:19553712G>T	uc001vuz.1	+	1	348	c.296G>T	c.(295-297)GGC>GTC	p.G99V	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	99										ovary(1)	1						AGCAAGATGGGCAAGTGGTGC	0.622													51	272					1.67886e-27	1.71905e-27	1	1	0
P704P	641455	broad.mit.edu	37	14	20019973	20019973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:20019973G>A	uc001vwc.3	-	1	300	c.248C>T	c.(247-249)TCT>TTT	p.S83F	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	83											0						GTGGTCTCCAGAAGTGCCCAC	0.592													28	190					0	0	1	0	0
OR4M1	441670	broad.mit.edu	37	14	20249039	20249039	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:20249039G>A	uc010tku.1	+	1	558	c.558G>A	c.(556-558)CGG>CGA	p.R186R		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGGTTGTCCGGATTGCCTGTG	0.453													53	122					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20344609	20344609	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:20344609C>T	uc001vwh.1	+	1	183	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTATGTATTTCCTGCTTACCA	0.403													49	96					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20388785	20388785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:20388785C>T	uc010tkw.1	+	1	20	c.20C>T	c.(19-21)TCA>TTA	p.S7L		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCCAATTCTTCAGTGGTGTCT	0.358													15	42					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20389067	20389067	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:20389067T>C	uc010tkw.1	+	1	302	c.302T>C	c.(301-303)ATT>ACT	p.I101T		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATAGCCCAAATTTTCTTTATT	0.418													48	126					0	0	1	0	0
OR4K1	79544	broad.mit.edu	37	14	20404752	20404752	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:20404752G>A	uc001vwj.1	+	1	927	c.927G>A	c.(925-927)TGG>TGA	p.W309*		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TGAACTCCTGGAAAAACTAGG	0.438													12	30					0	0	1	0	0
OR4K14	122740	broad.mit.edu	37	14	20482700	20482700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:20482700G>A	uc010tky.1	-	1	653	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CACGGTGTAGGAGATCAGGAG	0.498													4	26					0	0	1	0	0
OR4L1	122742	broad.mit.edu	37	14	20528394	20528394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:20528394G>A	uc001vwn.1	+	1	191	c.191G>A	c.(190-192)GGA>GAA	p.G64E		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TTTCTCCTTGGAAATCTCTCT	0.458													13	82					0	0	1	0	0
EDDM3A	10876	broad.mit.edu	37	14	21216049	21216049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:21216049G>A	uc001vyb.2	+	2	377	c.310G>A	c.(310-312)GAG>AAG	p.E104K	EDDM3A_uc001vyc.2_Missense_Mutation_p.E104K	NM_006683	NP_006674	Q14507	EP3A_HUMAN	human epididymis-specific 3 alpha precursor	104					sperm displacement	extracellular space					0						CAAAGTACTCGAGTGTCACTG	0.443													9	29					0	0	1	0	0
EDDM3A	10876	broad.mit.edu	37	14	21216051	21216051	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:21216051G>A	uc001vyb.2	+	2	379	c.312G>A	c.(310-312)GAG>GAA	p.E104E	EDDM3A_uc001vyc.2_Silent_p.E104E	NM_006683	NP_006674	Q14507	EP3A_HUMAN	human epididymis-specific 3 alpha precursor	104					sperm displacement	extracellular space					0						AAGTACTCGAGTGTCACTGGG	0.448													9	26					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102351	22102351	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:22102351G>A	uc010tmc.1	-	1	648	c.648C>T	c.(646-648)TTC>TTT	p.F216F		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		GAATTAACATGAAGCAACTGG	0.557													24	42					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102994	22102994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:22102994C>T	uc010tmc.1	-	1	5	c.5G>A	c.(4-6)GGA>GAA	p.G2E		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		TTTGGTCTTTCCCATGTCTTT	0.438													24	74					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22134151	22134151	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:22134151C>T	uc010tmd.1	+	1	855	c.855C>T	c.(853-855)TTC>TTT	p.F285F		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TGAATCCCTTCATTTACACCT	0.453													4	28					0	0	1	0	0
PRMT5	10419	broad.mit.edu	37	14	23392336	23392336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:23392336G>A	uc001whm.1	-	13	1500	c.1409C>T	c.(1408-1410)TCC>TTC	p.S470F	PRMT5_uc001whl.1_Missense_Mutation_p.S453F|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_Missense_Mutation_p.S364F|PRMT5_uc010tng.1_Missense_Mutation_p.S409F|PRMT5_uc010tnh.1_Missense_Mutation_p.S426F|PRMT5_uc001whn.1_Missense_Mutation_p.S299F	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	470					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		AGCCAGAAAGGAAGTGTACTC	0.512													8	17					0	0	1	0	0
PSMB11	122706	broad.mit.edu	37	14	23511897	23511897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:23511897C>T	uc010ake.1	+	1	522	c.463C>T	c.(463-465)CGC>TGC	p.R155C		NM_001099780	NP_001093250	A5LHX3	PSB11_HUMAN	proteasome beta 11 subunit precursor	155					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00643)		CGGCTGGGACCGCTCTGGCCC	0.622													17	49					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23886452	23886452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:23886452G>A	uc001wjx.2	-	32	4535	c.4429C>T	c.(4429-4431)CTC>TTC	p.L1477F		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1477	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCTGTGCTGAGGGAGCGAGCC	0.577													45	90					0	0	1	0	0
CPNE6	9362	broad.mit.edu	37	14	24542791	24542791	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:24542791G>A	uc001wll.2	+	3	351	c.252G>A	c.(250-252)AAG>AAA	p.K84K	CPNE6_uc010tnv.1_Silent_p.K139K|CPNE6_uc001wlm.2_5'UTR|CPNE6_uc001wln.2_5'Flank	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	84	C2 1.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		TTGAGGAGAAGCAGCCCCTGC	0.587													26	70					0	0	1	0	0
IPO4	79711	broad.mit.edu	37	14	24651015	24651015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:24651015G>A	uc001wmv.1	-	27	2973	c.2842C>T	c.(2842-2844)CTC>TTC	p.L948F	IPO4_uc001wmt.1_Missense_Mutation_p.L426F|IPO4_uc001wmu.2_Missense_Mutation_p.L610F|IPO4_uc001wmx.1_Missense_Mutation_p.L812F|IPO4_uc001wmy.1_Missense_Mutation_p.L812F|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Missense_Mutation_p.L948F	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	948	HEAT 6.				intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		CGCGCCAGGAGGGGAAAAAGG	0.622													11	29					0	0	1	0	0
NOVA1	4857	broad.mit.edu	37	14	26917978	26917978	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:26917978G>A	uc001wpy.2	-	5	1029	c.711C>T	c.(709-711)ATC>ATT	p.I237I	NOVA1_uc001wpz.2_Silent_p.I213I|NOVA1_uc001wqa.2_Silent_p.I115I	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	240	KH 2.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		TCTTCTGGATGATAAGTTCAA	0.468													33	49					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33293838	33293838	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:33293838C>T	uc001wrq.2	+	13	6989	c.6819C>T	c.(6817-6819)GCC>GCT	p.A2273A		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2273					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		CTGCTTCAGCCAAATCTAAAG	0.428													17	50					0	0	1	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36197713	36197713	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:36197713A>G	uc001wti.2	-	13	1982	c.1591T>C	c.(1591-1593)TTT>CTT	p.F531L	RALGAPA1_uc001wtj.2_Missense_Mutation_p.F531L|RALGAPA1_uc010tpv.1_Missense_Mutation_p.F531L|RALGAPA1_uc010tpw.1_Missense_Mutation_p.F531L|RALGAPA1_uc001wtk.1_Missense_Mutation_p.F382L	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	531					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TTTATAATAAACACCTAAGAC	0.299													8	21					0	0	1	0	0
C14orf106	55320	broad.mit.edu	37	14	45686323	45686323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:45686323G>A	uc001wwf.2	-	13	3361	c.2902C>T	c.(2902-2904)CTT>TTT	p.L968F		NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106	968					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						TTCCTTTTAAGAGTTCCCACT	0.368													32	76					0	0	1	0	0
MDGA2	161357	broad.mit.edu	37	14	47426821	47426821	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:47426821G>A	uc001wwj.3	-	9	1834	c.1638C>T	c.(1636-1638)TTC>TTT	p.F546F	MDGA2_uc001wwi.3_Silent_p.F317F|MDGA2_uc010ani.2_Silent_p.F106F	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	546	Ig-like 6.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						GGATTTCCAAGAATGCTGGTT	0.453													15	49					0	0	1	0	0
TRIM9	114088	broad.mit.edu	37	14	51467457	51467457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:51467457C>T	uc001wyx.3	-	6	2173	c.1408G>A	c.(1408-1410)GTG>ATG	p.V470M	TRIM9_uc001wyy.2_Missense_Mutation_p.V466M|TRIM9_uc001wyz.3_Missense_Mutation_p.V470M	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	470	Fibronectin type-III.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					TCGGCGGGCACCGTGGACAGA	0.542													13	39					0	0	1	0	0
OTX2	5015	broad.mit.edu	37	14	57271053	57271053	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:57271053G>A	uc001xcp.2	-	2	273	c.102C>T	c.(100-102)ACC>ACT	p.T34T	OTX2_uc010aou.2_Silent_p.T34T|OTX2_uc001xcq.2_Silent_p.T42T	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	34					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					GTTTCCGGGGGGTGGCTGCGG	0.637													17	33					0	0	1	0	0
RTN1	6252	broad.mit.edu	37	14	60212694	60212694	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:60212694G>A	uc001xen.1	-	2	956	c.747C>T	c.(745-747)ATC>ATT	p.I249I		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	249					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		GGTCCTTGATGATTTTTCCCT	0.428													53	100					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63473177	63473177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:63473177C>T	uc001xfx.2	-	3	262	c.211G>A	c.(211-213)GAA>AAA	p.E71K	KCNH5_uc001xfy.2_Missense_Mutation_p.E71K|KCNH5_uc001xfz.1_Missense_Mutation_p.E13K|KCNH5_uc001xga.2_Missense_Mutation_p.E13K	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	71	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TCAGTCAATTCCCCATACATA	0.348													7	32					0	0	1	0	0
C14orf50	145376	broad.mit.edu	37	14	65054985	65054985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:65054985G>A	uc001xhl.1	+	11	1150	c.1054G>A	c.(1054-1056)GGA>AGA	p.G352R	C14orf50_uc001xhm.1_Missense_Mutation_p.G82R	NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	352										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		AAAGCATGTGGGAACTCTGGA	0.527													28	47					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65239538	65239538	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:65239538C>T	uc001xht.2	-	25	5367	c.5313G>A	c.(5311-5313)TGG>TGA	p.W1771*	SPTB_uc001xhr.2_Nonsense_Mutation_p.W1771*|SPTB_uc001xhs.2_Nonsense_Mutation_p.W1771*|SPTB_uc001xhu.2_Nonsense_Mutation_p.W1771*|SPTB_uc010aqi.2_Nonsense_Mutation_p.W432*	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1771	Spectrin 15.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GCCCGTCCTTCCACTCGGCGA	0.632													19	36					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65261206	65261206	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:65261206G>A	uc001xht.2	-	12	1828	c.1774C>T	c.(1774-1776)CTG>TTG	p.L592L	SPTB_uc001xhr.2_Silent_p.L592L|SPTB_uc001xhs.2_Silent_p.L592L|SPTB_uc001xhu.2_Silent_p.L592L	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	592	Spectrin 3.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GTGAACTTCAGGGTGGCTGCG	0.532													57	121					0	0	1	0	0
FUT8	2530	broad.mit.edu	37	14	66209066	66209066	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:66209066T>C	uc001xin.2	+	11	2863	c.1666T>C	c.(1666-1668)TAC>CAC	p.Y556H	FUT8_uc001xio.2_Missense_Mutation_p.Y556H|FUT8_uc010tsp.1_Missense_Mutation_p.Y393H|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Missense_Mutation_p.Y556H|FUT8_uc001xiq.2_Missense_Mutation_p.Y427H|FUT8_uc001xis.2_Missense_Mutation_p.Y150H	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	556	SH3.|Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		ATATCCCTCCTACAAAGTTCG	0.453													3	71					0	0	1	0	0
GPHN	10243	broad.mit.edu	37	14	67579811	67579811	+	Missense_Mutation	SNP	C	T	T	rs138042556		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:67579811C>T	uc001xiy.2	+	15	2571	c.1450C>T	c.(1450-1452)CTT>TTT	p.L484F	GPHN_uc001xix.2_Missense_Mutation_p.L517F|GPHN_uc010tss.1_Missense_Mutation_p.L530F|GPHN_uc010tst.1_Missense_Mutation_p.L453F|GPHN_uc010tsu.1_Missense_Mutation_p.L407F	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	484	MPT adenylyltransferase.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		AGAGATTGGTCTTCTGGCAAC	0.443			T	MLL	AL								14	28					0	0	1	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713324	70713324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:70713324C>T	uc010ttg.1	-	1	1195	c.544G>A	c.(544-546)GAT>AAT	p.D182N		NR_003951				SubName: Full=ADAM21-like protein;												0						AATTCTTCATCATGCTGCATA	0.403													36	150					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71568710	71568710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:71568710C>T	uc001xmo.2	+	31	6039	c.5593C>T	c.(5593-5595)CAT>TAT	p.H1865Y	PCNX_uc010are.1_Missense_Mutation_p.H1754Y|PCNX_uc010arf.1_Missense_Mutation_p.H653Y|PCNX_uc001xmp.2_5'UTR	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1865						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TATTTAGGATCATTTTACTTC	0.323													15	26					0	0	1	0	0
RGS6	9628	broad.mit.edu	37	14	72925077	72925077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:72925077C>T	uc001xna.3	+	5	857	c.334C>T	c.(334-336)CGT>TGT	p.R112C	RGS6_uc010ttn.1_Missense_Mutation_p.R112C|RGS6_uc001xmx.3_Missense_Mutation_p.R112C|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.R112C|RGS6_uc010ttp.1_Missense_Mutation_p.R43C|RGS6_uc001xmz.1_5'Flank|RGS6_uc010arg.2_RNA	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	112	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CACCTTTTATCGTTTCCAGGT	0.453													19	59					0	0	1	0	0
HEATR4	399671	broad.mit.edu	37	14	73989321	73989321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:73989321G>A	uc010tub.1	-	3	858	c.536C>T	c.(535-537)CCT>CTT	p.P179L	HEATR4_uc010tua.1_Missense_Mutation_p.P132L	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		ATCTAGAGAAGGTGGCCGACC	0.572													9	30					0	0	1	0	0
ZNF410	57862	broad.mit.edu	37	14	74388824	74388824	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:74388824C>T	uc001xoz.1	+	10	1367	c.1185C>T	c.(1183-1185)AAC>AAT	p.N395N	ZNF410_uc001xoy.1_RNA|ZNF410_uc010tuf.1_Intron|ZNF410_uc010tug.1_Silent_p.N126N|ZNF410_uc010tuh.1_Silent_p.N322N|ZNF410_uc010tui.1_RNA|ZNF410_uc010arz.1_Silent_p.N412N|ZNF410_uc001xpa.1_Silent_p.N199N|ZNF410_uc001xpb.1_Intron|ZNF410_uc001xpc.1_Silent_p.N342N|ZNF410_uc010tuj.1_Silent_p.N199N	NM_021188	NP_067011	Q86VK4	ZN410_HUMAN	zinc finger protein 410	395					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00369)		CCAGTAAAAACCTGGTGTCTA	0.468													16	40					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74824771	74824771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:74824771C>T	uc001xpw.3	+	2	1476	c.1285C>T	c.(1285-1287)CCT>TCT	p.P429S		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	429					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		ACGCAGGTTCCCTGGCATCTC	0.572													32	65					0	0	1	0	0
ISM2	145501	broad.mit.edu	37	14	77948818	77948818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:77948818C>T	uc001xtz.2	-	4	894	c.820G>A	c.(820-822)GAC>AAC	p.D274N	ISM2_uc001xua.2_Intron|ISM2_uc001xty.2_Missense_Mutation_p.D186N|ISM2_uc010tvl.1_Missense_Mutation_p.D193N	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	274						extracellular region				skin(1)	1						gaaggatagtcctcgtcttcc	0.289													19	41					0	0	1	0	0
KCNK13	56659	broad.mit.edu	37	14	90651053	90651053	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:90651053G>A	uc001xye.1	+	2	1375	c.933G>A	c.(931-933)AGG>AGA	p.R311R		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	311	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				GATCACGCAGGAACGTGGTGA	0.592													35	60					0	0	1	0	0
TTC7B	145567	broad.mit.edu	37	14	91161911	91161911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:91161911C>T	uc001xyp.2	-	6	832	c.710G>A	c.(709-711)AGA>AAA	p.R237K	uc001xyr.1_5'Flank	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	237	TPR 2.						binding			ovary(2)	2		Melanoma(154;0.222)				TCCGACTCCTCTTGTCAAGTT	0.398													10	22					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94069764	94069764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:94069764C>T	uc001ybv.1	+	23	3306	c.3223C>T	c.(3223-3225)CCT>TCT	p.P1075S	KIAA1409_uc001ybs.1_Nonsense_Mutation_p.R1075*	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CTCCAAAATTCGTTGAGTATC	0.473													11	16					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94909132	94909132	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:94909132C>T	uc001ydd.1	-	5	1140	c.1080G>A	c.(1078-1080)GCG>GCA	p.A360A		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	360					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		TGTCCACCATCGCCTTGTGTG	0.562													7	27					0	0	1	0	0
SERPINA13	388007	broad.mit.edu	37	14	95108045	95108045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:95108045C>T	uc001ydt.2	+	2	650	c.562C>T	c.(562-564)CCC>TCC	p.P188S		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						TGGGCAGGGTCCCCGGCTCCT	0.632													26	73					0	0	1	0	0
BDKRB2	624	broad.mit.edu	37	14	96707205	96707205	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:96707205G>A	uc010avm.1	+	3	736	c.540G>A	c.(538-540)GTG>GTA	p.V180V	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.V153V|BDKRB2_uc001yfg.2_Silent_p.V180V	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	180	Helical; Name=4; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		ACAGCTTGGTGATCTGGGGGT	0.607													27	61					0	0	1	0	0
C14orf68	283600	broad.mit.edu	37	14	100793639	100793639	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:100793639G>C	uc001yhc.2	+	4	332	c.259G>C	c.(259-261)GGC>CGC	p.G87R	C14orf68_uc001yhd.2_5'UTR	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	87					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				GCTCCGGTACGGCAACCCTGA	0.692													25	55					0	0	1	0	0
C14orf68	283600	broad.mit.edu	37	14	100795794	100795794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:100795794G>A	uc001yhc.2	+	6	812	c.739G>A	c.(739-741)GCA>ACA	p.A247T	C14orf68_uc001yhd.2_Missense_Mutation_p.A101T	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	247	Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				GAGACTGCAGGCAGACGGGCA	0.667													25	65					0	0	1	0	0
TECPR2	9895	broad.mit.edu	37	14	102881014	102881014	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:102881014C>T	uc001ylw.1	+	5	670	c.522C>T	c.(520-522)TCC>TCT	p.S174S	TECPR2_uc010txw.1_Silent_p.S174S|TECPR2_uc010awl.2_Silent_p.S174S|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	174	WD 3.						protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						AGCCATCTTCCATTGTGCAGC	0.493													37	69					0	0	1	0	0
TRAF3	7187	broad.mit.edu	37	14	103363719	103363719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:103363719C>T	uc001ymc.1	+	10	1294	c.941C>T	c.(940-942)TCC>TTC	p.S314F	TRAF3_uc001yme.1_Missense_Mutation_p.S289F|TRAF3_uc001ymd.1_Missense_Mutation_p.S314F|TRAF3_uc010txy.1_Missense_Mutation_p.S231F	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	314	Potential.				apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		AATAATGAATCCAAAATCCTT	0.378													8	21					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106173899	106173899	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:106173899C>T	uc010tyt.1	-	3633		c.59999G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						GAATGTGTTTCCTGGAGGGTA	0.697													5	31					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106320619	106320619	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:106320619G>A	uc010tyt.1	-	3601		c.56355C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						ACACGGTCAGGATGCTGTGGG	0.652													8	16					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106330906	106330906	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:106330906G>A	uc010tyt.1	-	3521		c.53573C>T			uc001yrs.2_5'Flank|uc001yrt.2_5'Flank|uc001yrw.1_5'Flank|uc001yrx.1_5'Flank|uc001yrz.1_5'Flank|uc001yse.2_5'Flank|uc001ysf.2_Intron|uc001ysj.2_5'Flank|uc001ysk.1_5'Flank|uc001ysl.1_5'Flank|uc001ysm.1_5'Flank|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CAGGACACTCGAATGGGTCAC	0.627													3	6					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106518494	106518494	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:106518494C>T	uc010tyt.1	-	1630		c.32943G>A								Parts of antibodies, mostly variable regions.												0						GATGGTGAATCGGCCCTTCAC	0.532													8	263					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106691775	106691775	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:106691775C>T	uc010tyt.1	-	754		c.20588G>A								Parts of antibodies, mostly variable regions.												0						ATCGGCCCTTCACTGAGTCTG	0.517													68	188					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106757786	106757786	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:106757786G>A	uc010tyt.1	-	472		c.16279C>T								Parts of antibodies, mostly variable regions.												0						TTCGTCATTCGAAAAAATGTG	0.532													33	57					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106829737	106829737	+	RNA	SNP	C	T	T	rs3814933		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:106829737C>T	uc010tyt.1	-	323		c.12768G>A			uc001ysx.1_RNA					Parts of antibodies, mostly variable regions.												0						TGATTGATTTCCCCAATCCAC	0.557													33	81					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106963192	106963192	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:106963192C>T	uc010tyt.1	-	207		c.9492G>A								Parts of antibodies, mostly variable regions.												0						CAGTCTTCTTCACCTCAGCCC	0.592													21	60					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106993908	106993908	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:106993908C>T	uc010tyt.1	-	187		c.8539G>A								Parts of antibodies, mostly variable regions.												0						GATGGTGAATCGGCCCTTCAC	0.502													8	400					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20496664	20496664	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:20496664C>T	uc001ytf.1	+	6		c.717C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		AAGCGCCCGGCTGTGTGTGCT	0.433													4	54					0	0	1	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413978	22413978	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:22413978C>T	uc001yuf.2	+	1	277	c.277C>T	c.(277-279)CAG>TAG	p.Q93*		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TGGCCCAAACCAGCTGGACAA	0.512													16	49					0	0	1	0	0
CYFIP1	23191	broad.mit.edu	37	15	22960866	22960866	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:22960866C>T	uc001yus.2	+	18	2163	c.2059C>T	c.(2059-2061)CTG>TTG	p.L687L	CYFIP1_uc001yut.2_Silent_p.L687L|CYFIP1_uc010aya.1_Silent_p.L715L|CYFIP1_uc001yuu.2_Silent_p.L256L	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	687					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		CAAGCAGTTCCTGTACGACGA	0.502													12	27					0	0	1	0	0
MKRN3	7681	broad.mit.edu	37	15	23811001	23811001	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:23811001G>A	uc001ywh.3	+	1	548	c.72G>A	c.(70-72)AGG>AGA	p.R24R	MKRN3_uc001ywi.2_Silent_p.R24R|MKRN3_uc010ayi.1_Silent_p.R24R	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	24						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		AGGCAGCAAGGGAGGGTGTGT	0.672													16	24					0	0	1	0	0
NDN	4692	broad.mit.edu	37	15	23932279	23932279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:23932279G>A	uc001ywk.2	-	1	172	c.86C>T	c.(85-87)TCG>TTG	p.S29L		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	29					negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		AACCCCCTCCGAAACCCCAGG	0.687									Prader-Willi_syndrome				7	14					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24923034	24923034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:24923034C>T	uc001ywo.2	+	1	2494	c.2020C>T	c.(2020-2022)CCT>TCT	p.P674S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	674					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TCCCATCATTCCTCCTCCAGA	0.512													62	118					0	0	1	0	0
SNORD116-1	100033413	broad.mit.edu	37	15	25296652	25296652	+	RNA	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:25296652A>G	uc001yxg.2	+	1		c.30A>G				NR_003316				Homo sapiens small nucleolar RNA, C/D box 116-1 (SNORD116-1), non-coding RNA.												0						CTATAAAAACATTCCTTGGAA	0.478													34	85					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	25427460	25427460	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:25427460C>T	uc001yyy.1	+	3		c.290C>T			uc001yza.1_5'Flank|SNORD115-7_uc001yyw.1_RNA|SNORD115-7_uc001yyz.2_5'Flank					Homo sapiens clone Rt-7 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.																		GCCCTGGTCTCCTGCATTGAG	0.607													19	55					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28447305	28447305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:28447305G>A	uc001zbj.2	-	47	7677	c.7571C>T	c.(7570-7572)TCT>TTT	p.S2524F	HERC2_uc001zbk.1_Missense_Mutation_p.S59F	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2524					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTCCTCGTCAGAATACTCGTC	0.622													10	18					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	28929412	28929412	+	RNA	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:28929412A>G	uc010azc.2	+	14		c.2117A>G								Homo sapiens I.M.A.G.E. clone 321824, mRNA sequence.																		GTTGTTGTGGAAATTCAATTT	0.478													5	31					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33873807	33873807	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:33873807C>T	uc001zhi.2	+	14	1606	c.1536C>T	c.(1534-1536)GCC>GCT	p.A512A	RYR3_uc010bar.2_Silent_p.A512A	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	512	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GTGGCATGGCCTGGAAAGAAA	0.468													18	54					0	0	1	0	0
GJD2	57369	broad.mit.edu	37	15	35045173	35045173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:35045173C>T	uc001zis.1	-	2	472	c.472G>A	c.(472-474)GAG>AAG	p.E158K	uc001zit.1_5'Flank	NM_020660	NP_065711	Q9UKL4	CXD2_HUMAN	gap junction protein, delta 2, 36kDa	158	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_lung(180;9.67e-07)		all cancers(64;2.75e-18)|GBM - Glioblastoma multiforme(113;1.9e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		CTGGTGTTCTCTGTGTTCTGC	0.512													80	156					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39885299	39885299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:39885299G>A	uc001zkh.2	+	18	3045	c.2866G>A	c.(2866-2868)GAT>AAT	p.D956N	THBS1_uc010bbi.2_Missense_Mutation_p.D428N	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	956					activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CAGTGAGACCGATTTCCGCCG	0.502													19	40					0	0	1	0	0
DISP2	85455	broad.mit.edu	37	15	40655877	40655878	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:40655877_40655878CC>TT	uc001zlk.1	+	2	260_261	c.171_172CC>TT	c.(169-174)TCCCTC>TCTTTC	p.L58F		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	58					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		GAAGCTGCTCCCTCCACAGCTG	0.644													70	110					0	0	1	0	0
INO80	54617	broad.mit.edu	37	15	41377662	41377662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:41377662G>A	uc001zni.2	-	7	991	c.778C>T	c.(778-780)CCC>TCC	p.P260S	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	260	Assembles INO80 complex module with putative regulatory components INO80E, INO80F, UCHL5, NFRKB, MCRS1 and IN80D.|Assembles INO80 complex module consisting of conserved components ACTR8, ACTL6A and YY1.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						GTGCCAGGGGGAGGTGCATCG	0.463													28	42					0	0	1	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42437981	42437981	+	Missense_Mutation	SNP	C	T	T	rs149948316		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:42437981C>T	uc001zoz.2	-	15	1718	c.1655G>A	c.(1654-1656)CGG>CAG	p.R552Q	PLA2G4F_uc010bcq.2_5'Flank|PLA2G4F_uc001zoy.2_Missense_Mutation_p.R184Q|PLA2G4F_uc010bcr.2_Missense_Mutation_p.R303Q|PLA2G4F_uc001zpa.2_Missense_Mutation_p.R303Q|PLA2G4F_uc010bcs.2_Missense_Mutation_p.R339Q	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	552	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		GTAACAGATCCGGGGTTCAGG	0.627													21	47					0	0	1	0	0
VPS39	23339	broad.mit.edu	37	15	42470453	42470453	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:42470453A>G	uc001zpd.2	-	11	1107	c.956T>C	c.(955-957)CTC>CCC	p.L319P	VPS39_uc001zpc.2_Missense_Mutation_p.L308P	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	319					protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		CTTGTCCTGGAGAAGTTGTTG	0.438													21	26					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43045324	43045324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:43045324G>A	uc001zqo.2	-	14	2559	c.2120C>T	c.(2119-2121)CCA>CTA	p.P707L	TTBK2_uc010bcy.2_Missense_Mutation_p.P638L	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	707					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		GTTTTCCCTTGGAGAGTAAAG	0.493													34	82					0	0	1	0	0
TGM7	116179	broad.mit.edu	37	15	43577113	43577113	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:43577113G>A	uc001zrf.1	-	7	908	c.903C>T	c.(901-903)TCC>TCT	p.S301S		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	301					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	AACGGAAATTGGAAACAACAC	0.418													20	47					0	0	1	0	0
TRIM69	140691	broad.mit.edu	37	15	45050909	45050909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:45050909G>A	uc001zuf.2	+	5	1565	c.670G>A	c.(670-672)GAG>AAG	p.E224K	TRIM69_uc001zui.1_Missense_Mutation_p.E20K|TRIM69_uc010bdy.1_Missense_Mutation_p.E20K|TRIM69_uc001zug.1_Missense_Mutation_p.E224K|TRIM69_uc001zuh.1_Missense_Mutation_p.E65K	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	224	Potential.				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		CATTTTAACTGAGCTCCGGGA	0.463													8	42					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45398008	45398008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:45398008C>T	uc010bea.2	-	18	2370	c.2167G>A	c.(2167-2169)GAA>AAA	p.E723K	DUOX2_uc001zun.2_Missense_Mutation_p.E723K	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	723	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CGTTCCTCTTCAGAACTAAAC	0.592													18	58					0	0	1	0	0
MYEF2	50804	broad.mit.edu	37	15	48451941	48451941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:48451941C>T	uc001zwi.3	-	6	710	c.586G>A	c.(586-588)GGA>AGA	p.G196R	MYEF2_uc001zwj.3_Missense_Mutation_p.G196R|MYEF2_uc001zwl.2_Missense_Mutation_p.G36R	NM_016132	NP_057216	Q9P2K5	MYEF2_HUMAN	myelin expression factor 2	196					transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding|nucleotide binding|RNA binding			lung(2)|ovary(1)	3		all_lung(180;0.00217)		all cancers(107;3.73e-10)|GBM - Glioblastoma multiforme(94;7.81e-07)		GGGACGTGTCCTCCTGGAAAT	0.433													9	19					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50209220	50209220	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:50209220G>A	uc001zxu.2	-	20	2194	c.2052C>T	c.(2050-2052)ATC>ATT	p.I684I	ATP8B4_uc010ber.2_Silent_p.I557I|ATP8B4_uc010ufd.1_Silent_p.I494I|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	684	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		AGGCATAACCGATGTTGATGG	0.378													20	59					0	0	1	0	0
GLDN	342035	broad.mit.edu	37	15	51696816	51696816	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:51696816C>G	uc002aba.2	+	10	1690	c.1521C>G	c.(1519-1521)AAC>AAG	p.N507K	GLDN_uc002abb.2_Missense_Mutation_p.N383K	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	507	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		TCAATGCAAACTTTGATTTAA	0.403													40	75					0	0	1	0	0
KIAA1370	56204	broad.mit.edu	37	15	52892394	52892394	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:52892394A>C	uc002acg.3	-	9	2732	c.2579T>G	c.(2578-2580)ATT>AGT	p.I860S	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Missense_Mutation_p.I772S|KIAA1370_uc010ugf.1_Missense_Mutation_p.I867S	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	860											0				all cancers(107;0.0803)		TTTTTCATGAATATCTGGATC	0.308													14	32					0	0	1	0	0
WDR72	256764	broad.mit.edu	37	15	54003658	54003658	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:54003658A>T	uc002acj.2	-	8	774	c.732T>A	c.(730-732)TTT>TTA	p.F244L	WDR72_uc010bfi.1_Missense_Mutation_p.F244L	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	244										lung(1)|skin(1)	2				all cancers(107;0.0511)		GCAGAAGGGAAAAATCACAAT	0.358													10	31					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54306661	54306661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:54306661G>A	uc002ack.2	+	1	1561	c.1561G>A	c.(1561-1563)GAA>AAA	p.E521K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	521					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGATATCTTGGAAAAGCAAAC	0.373													17	37					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54307826	54307826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:54307826C>T	uc002ack.2	+	1	2726	c.2726C>T	c.(2725-2727)TCA>TTA	p.S909L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	909					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GATCACCTTTCATATGAAACA	0.378													21	65					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54614145	54614145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:54614145C>T	uc002ack.2	+	12	4277	c.4277C>T	c.(4276-4278)TCA>TTA	p.S1426L	UNC13C_uc002acl.2_Missense_Mutation_p.S256L	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1426					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGGCACTTTTCATGTCTGTCT	0.368													4	4					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54916041	54916041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:54916041C>T	uc002ack.2	+	30	6248	c.6248C>T	c.(6247-6249)CCC>CTC	p.P2083L	UNC13C_uc002acm.2_Missense_Mutation_p.P4L	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2083	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATGTTCCGCCCCTTTGTGGAA	0.383													11	26					0	0	1	0	0
ANXA2	302	broad.mit.edu	37	15	60653147	60653147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:60653147G>A	uc002agn.2	-	6	510	c.350C>T	c.(349-351)TCC>TTC	p.S117F	ANXA2_uc002agk.2_Missense_Mutation_p.S117F|ANXA2_uc002agl.2_Missense_Mutation_p.S117F|ANXA2_uc002agm.2_Missense_Mutation_p.S135F|ANXA2_uc010uhd.1_RNA|ANXA2_uc010bgj.2_Missense_Mutation_p.S117F	NM_001136015	NP_001129487	P07355	ANXA2_HUMAN	annexin A2 isoform 2	117	Annexin 2.				angiogenesis|positive regulation of vesicle fusion|skeletal system development	basement membrane|melanosome|midbody|soluble fraction	calcium ion binding|calcium-dependent phospholipid binding|cytoskeletal protein binding|phospholipase inhibitor activity			ovary(1)	1					Alteplase(DB00009)|Anistreplase(DB00029)|Tenecteplase(DB00031)	TACCTTCATGGAAGCTTTTAG	0.418													6	21					0	0	1	0	0
TPM1	7168	broad.mit.edu	37	15	63349295	63349295	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:63349295A>T	uc002alg.2	+	3	543	c.352A>T	c.(352-354)AAG>TAG	p.K118*	TPM1_uc002alh.2_Nonsense_Mutation_p.K118*|TPM1_uc010bgn.2_RNA|TPM1_uc002ali.2_Nonsense_Mutation_p.K118*|TPM1_uc002alj.2_Nonsense_Mutation_p.K118*|TPM1_uc002alk.2_Nonsense_Mutation_p.K118*|TPM1_uc002all.2_Nonsense_Mutation_p.K118*|TPM1_uc002alm.2_Nonsense_Mutation_p.K160*|TPM1_uc010uie.1_Nonsense_Mutation_p.K118*|TPM1_uc002alp.2_Nonsense_Mutation_p.K118*|TPM1_uc010uif.1_Nonsense_Mutation_p.K82*|TPM1_uc002alr.2_Nonsense_Mutation_p.K82*|TPM1_uc002als.2_Nonsense_Mutation_p.K82*|TPM1_uc010uig.1_Nonsense_Mutation_p.K82*|TPM1_uc002alt.2_Nonsense_Mutation_p.K82*|TPM1_uc010bgp.2_Intron	NM_001018005	NP_001018005	P09493	TPM1_HUMAN	tropomyosin 1 alpha chain isoform 1	118	By similarity.				cardiac muscle contraction|cellular component movement|cellular response to reactive oxygen species|muscle filament sliding|negative regulation of cell migration|positive regulation of ATPase activity|positive regulation of cell adhesion|positive regulation of heart rate by epinephrine|positive regulation of stress fiber assembly|regulation of muscle contraction|ruffle organization|sarcomere organization|ventricular cardiac muscle tissue morphogenesis|wound healing	bleb|cytosol|muscle thin filament tropomyosin|ruffle membrane|stress fiber	actin binding|structural constituent of cytoskeleton|structural constituent of muscle				0						GGAAGCTGAGAAGGCAGCAGA	0.537													29	65					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	63948490	63948490	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:63948490G>A	uc002amp.2	-	49	9815	c.9667C>T	c.(9667-9669)CGA>TGA	p.R3223*		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	3223					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CACATTAATCGAACTAGCGTT	0.532													10	32					0	0	1	0	0
PIF1	80119	broad.mit.edu	37	15	65112122	65112122	+	Silent	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:65112122C>A	uc002ant.2	-	8	1323	c.1257G>T	c.(1255-1257)GGG>GGT	p.G419G	PIF1_uc002anr.2_5'UTR|PIF1_uc002ans.2_Silent_p.G110G|PIF1_uc010uiq.1_Silent_p.G419G	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	419	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						TGGCCACAATCCCATCTCGCC	0.652													27	47					3.73148e-12	3.793e-12	1	1	0
DENND4A	10260	broad.mit.edu	37	15	66048611	66048612	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:66048611_66048612GG>AA	uc002aph.2	-	3	555_556	c.177_178CC>TT	c.(175-180)GTCCCA>GTTTCA	p.P60S	DENND4A_uc002api.2_Missense_Mutation_p.P60S|DENND4A_uc002apj.3_Missense_Mutation_p.P60S|DENND4A_uc010ujj.1_Missense_Mutation_p.P60S	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	60	MABP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TAATCCTGTGGGACTTCCTCCC	0.371													12	11					0	0	1	0	0
LRRC49	54839	broad.mit.edu	37	15	71305224	71305224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:71305224C>T	uc002asw.2	+	14	1922	c.1675C>T	c.(1675-1677)CGT>TGT	p.R559C	LRRC49_uc002asu.2_Missense_Mutation_p.R549C|LRRC49_uc002asx.2_Missense_Mutation_p.R515C|LRRC49_uc010ukf.1_Missense_Mutation_p.R564C|LRRC49_uc002asy.2_Missense_Mutation_p.R265C|LRRC49_uc002asz.2_Missense_Mutation_p.R531C	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	559						cytoplasm|microtubule				ovary(1)	1						ACCCCAGTATCGTCTGATTTC	0.363													21	65					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72020948	72020948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:72020948G>A	uc002atb.1	+	8	1497	c.1418G>A	c.(1417-1419)GGA>GAA	p.G473E	THSD4_uc002atd.1_Missense_Mutation_p.G147E|THSD4_uc010ukg.1_Missense_Mutation_p.G113E|THSD4_uc002ate.2_Missense_Mutation_p.G113E	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	473						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						GATCGACCAGGAAAATACGAG	0.522													35	93					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72195386	72195386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:72195386G>A	uc002atl.3	-	22	3369	c.2896C>T	c.(2896-2898)CAT>TAT	p.H966Y	MYO9A_uc010biq.2_Missense_Mutation_p.H586Y|MYO9A_uc002atn.1_Missense_Mutation_p.H947Y	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	966	Myosin head-like 2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						AGAAGTACATGGAAGTGGCTC	0.269													12	30					0	0	1	0	0
TMEM202	338949	broad.mit.edu	37	15	72699072	72699073	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:72699072_72699073CC>TT	uc002auq.2	+	3	467_468	c.467_468CC>TT	c.(466-468)TCC>TTT	p.S156F	TMEM202_uc002aur.2_RNA	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	156	Helical; (Potential).					integral to membrane				central_nervous_system(1)|skin(1)	2						CTGAAGGTATCCATGCTCAGCT	0.446													50	120					0	0	1	0	0
STRA6	64220	broad.mit.edu	37	15	74473253	74473253	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:74473253C>T	uc002axk.2	-	18	1892	c.1710G>A	c.(1708-1710)TTG>TTA	p.L570L	STRA6_uc002axi.2_Silent_p.L379L|STRA6_uc010ulh.1_Silent_p.L608L|STRA6_uc002axj.2_Silent_p.L609L|STRA6_uc010bji.2_Silent_p.L570L|STRA6_uc002axl.2_Silent_p.L502L|STRA6_uc002axm.2_Silent_p.L570L|STRA6_uc002axn.2_Silent_p.L561L|STRA6_uc010uli.1_Silent_p.L607L	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	570	Cytoplasmic (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						CTTCAATCTTCAAGAAGTTTC	0.612													30	80					0	0	1	0	0
ETFA	2108	broad.mit.edu	37	15	76584828	76584828	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:76584828T>C	uc002bbt.2	-	4	376	c.295A>G	c.(295-297)ACT>GCT	p.T99A	ETFA_uc010bkq.1_Missense_Mutation_p.T50A|ETFA_uc002bbu.1_Missense_Mutation_p.T99A	NM_000126	NP_000117	P13804	ETFA_HUMAN	electron transfer flavoprotein, alpha	99					respiratory electron transport chain|transport	mitochondrial matrix	electron carrier activity|flavin adenine dinucleotide binding|oxidoreductase activity				0						TGCTTCTGAGTTGCCAAAATC	0.353													16	36					0	0	1	0	0
SGK269	79834	broad.mit.edu	37	15	77472206	77472206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:77472206G>A	uc002bcm.2	-	3	2371	c.2063C>T	c.(2062-2064)ACT>ATT	p.T688I	SGK269_uc002bcn.2_Missense_Mutation_p.T688I	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	688					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		AAACCCTTTAGTTTGAAGACA	0.408													44	140					0	0	1	0	0
IREB2	3658	broad.mit.edu	37	15	78780998	78780998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:78780998C>T	uc002bdr.2	+	16	2123	c.1961C>T	c.(1960-1962)CCC>CTC	p.P654L	IREB2_uc010unb.1_Missense_Mutation_p.P404L	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	654							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		GGTACTGACCCCACCGGCAAG	0.343													14	27					0	0	1	0	0
TMED3	23423	broad.mit.edu	37	15	79614517	79614517	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:79614517C>T	uc002beu.2	+	3	716	c.615C>T	c.(613-615)TTC>TTT	p.F205F	TMED3_uc010unj.1_Intron|TMED3_uc002bev.2_RNA	NM_007364	NP_031390	Q9Y3Q3	TMED3_HUMAN	transmembrane emp24 domain containing 3	205	Cytoplasmic (Potential).				protein transport	ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane				ovary(1)|skin(1)	2						AAAGCTTCTTCACAGAAAAAC	0.557													33	58					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83933428	83933428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:83933428G>A	uc002bjt.1	-	4	663	c.575C>T	c.(574-576)TCC>TTC	p.S192F	BNC1_uc010uos.1_Missense_Mutation_p.S180F	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	192					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TATGATGATGGATTGCTCTTC	0.473													39	114					0	0	1	0	0
ZNF592	9640	broad.mit.edu	37	15	85326896	85326896	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:85326896G>A	uc002bld.2	+	4	1326	c.990G>A	c.(988-990)AAG>AAA	p.K330K	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	330					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGTCACCAAAGAGTCCCCGGA	0.542													32	94					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88678469	88678469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:88678469C>T	uc002bme.1	-	9	1229	c.1067G>A	c.(1066-1068)GGA>GAA	p.G356E	NTRK3_uc002bmh.2_Missense_Mutation_p.G356E|NTRK3_uc002bmf.1_Missense_Mutation_p.G356E|NTRK3_uc010upl.1_Missense_Mutation_p.G258E|NTRK3_uc010bnh.1_Missense_Mutation_p.G356E|NTRK3_uc002bmg.2_Missense_Mutation_p.G356E	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	356	Ig-like C2-type 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GGAAATCTCTCCCTCTTGGTA	0.557			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			31	75					0	0	1	0	0
POLG	5428	broad.mit.edu	37	15	89870213	89870213	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:89870213C>T	uc002bns.3	-	8	1797	c.1515G>A	c.(1513-1515)AAG>AAA	p.K505K	POLG_uc002bnr.3_Silent_p.K505K	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	505					base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			TGGCTGGTTCCTTCTTCACCT	0.572								DNA_polymerases_(catalytic_subunits)					66	148					0	0	1	0	0
PRC1	9055	broad.mit.edu	37	15	91517854	91517854	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:91517854C>T	uc002bqm.2	-	10	1468	c.1311G>A	c.(1309-1311)GAG>GAA	p.E437E	PRC1_uc002bqn.2_Silent_p.E437E|PRC1_uc002bqo.2_Silent_p.E437E|PRC1_uc010uqs.1_Silent_p.E396E	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	437	Potential.|Spectrin-fold.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					ATCGATGCATCTCCCATTGTT	0.433													250	605					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94911016	94911016	+	Missense_Mutation	SNP	G	A	A	rs140445827		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:94911016G>A	uc002btj.2	+	10	1549	c.1484G>A	c.(1483-1485)CGA>CAA	p.R495Q	MCTP2_uc002bti.2_Missense_Mutation_p.R495Q|MCTP2_uc010boj.2_Missense_Mutation_p.R224Q|MCTP2_uc010bok.2_Missense_Mutation_p.R495Q|MCTP2_uc002btk.3_Missense_Mutation_p.R83Q|MCTP2_uc002btl.2_Missense_Mutation_p.R83Q	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	495					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			ATTACCCAGCGATATGTGAGT	0.448													17	38					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94945245	94945245	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:94945245C>T	uc002btj.2	+	16	2147	c.2082C>T	c.(2080-2082)TTC>TTT	p.F694F	MCTP2_uc010boj.2_Silent_p.F423F|MCTP2_uc010bok.2_Silent_p.F694F|MCTP2_uc002btk.3_Silent_p.F282F|MCTP2_uc002btl.2_Silent_p.F282F	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	694					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CAATAGCATTCGCGGTAAGCT	0.383													11	35					0	0	1	0	0
FAM169B	283777	broad.mit.edu	37	15	99023990	99023990	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:99023990T>C	uc002buk.1	-	4	273	c.23A>G	c.(22-24)GAA>GGA	p.E8G		NM_182562	NP_872368	Q8N8A8	F169B_HUMAN	hypothetical protein LOC283777	8											0						CACAACCCTTTCCCCAAACGA	0.373													14	27					0	0	1	0	0
SYNM	23336	broad.mit.edu	37	15	99670160	99670160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:99670160C>T	uc002bup.2	+	6	1715	c.1595C>T	c.(1594-1596)TCC>TTC	p.S532F	SYNM_uc002buo.2_Missense_Mutation_p.S532F|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	532	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						GAGAAGGCTTCCGAGGAGAGA	0.443													5	13					0	0	1	0	0
LINS1	55180	broad.mit.edu	37	15	101109545	101109545	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:101109545G>A	uc002bwe.2	-	8	2463	c.2172C>T	c.(2170-2172)TGC>TGT	p.C724C	LINS1_uc002bwd.2_Silent_p.C311C|LINS1_uc002bwf.2_Silent_p.C724C|LINS1_uc002bwg.2_Silent_p.C724C|LINS1_uc002bwh.2_Silent_p.C724C	NM_001040614	NP_001035704	Q8NG48	LINES_HUMAN	lines homolog 1	724											0	Lung NSC(78;0.0018)|all_lung(78;0.00223)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.00095)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)			TTTGCAAACGGCAGATGGCAT	0.348													28	68					0	0	1	0	0
CHSY1	22856	broad.mit.edu	37	15	101718386	101718386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:101718386G>A	uc002bwt.1	-	4	2099	c.1616C>T	c.(1615-1617)CCT>CTT	p.P539L	CHSY1_uc010usd.1_Missense_Mutation_p.P267L	NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	539	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CCCAGACAAAGGAATCAGTAT	0.443													25	60					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	102292671	102292671	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr15:102292671C>T	uc010usj.1	+	4	318	c.259C>T	c.(259-261)CAA>TAA	p.Q87*	uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		ACTCTCAGACCAAGGAGTTCA	0.617													4	16					0	0	1	0	0
RHBDF1	64285	broad.mit.edu	37	16	112888	112888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:112888G>A	uc002cfl.3	-	9	828	c.680C>T	c.(679-681)TCC>TTC	p.S227F	RHBDF1_uc010uty.1_Missense_Mutation_p.S250F|RHBDF1_uc010utz.1_Missense_Mutation_p.S227F|RHBDF1_uc010bqo.1_RNA	NM_022450	NP_071895	Q96CC6	RHDF1_HUMAN	rhomboid family 1	227	Cytoplasmic (Potential).				cell migration|cell proliferation|negative regulation of protein secretion|protein transport|proteolysis|regulation of epidermal growth factor receptor signaling pathway|regulation of proteasomal protein catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity			ovary(1)|pancreas(1)	2		all_cancers(16;2.56e-05)|all_epithelial(16;0.000116)|Hepatocellular(780;0.0068)|Lung NSC(18;0.0795)|all_lung(18;0.159)				ATCCCTAACGGAGCGGCCCTG	0.642													22	45					0	0	1	0	0
WFIKKN1	117166	broad.mit.edu	37	16	682864	682864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:682864C>T	uc002cht.1	+	2	696	c.454C>T	c.(454-456)CTC>TTC	p.L152F	WFIKKN1_uc002chs.1_3'UTR	NM_053284	NP_444514	Q96NZ8	WFKN1_HUMAN	WAP, follistatin/kazal, immunoglobulin, kunitz	152	Kazal-like.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity				0		Hepatocellular(780;0.00335)				GGGCCTGCACCTCCACATCGT	0.721													10	32					0	0	1	0	0
RHBDL1	9028	broad.mit.edu	37	16	727794	727795	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:727794_727795GG>AA	uc002cis.1	+	7	1086_1087	c.1059_1060GG>AA	c.(1057-1062)GTGGGC>GTAAGC	p.G354S	RHBDL1_uc002cir.1_Missense_Mutation_p.G289S|RHBDL1_uc010uun.1_3'UTR|STUB1_uc002cit.2_5'Flank|STUB1_uc002ciu.2_5'Flank|STUB1_uc010bqz.2_5'Flank|STUB1_uc002civ.2_5'Flank	NM_003961	NP_003952	O75783	RHBL1_HUMAN	rhomboid protease 1	354	Helical; (Potential).				proteolysis|signal transduction	integral to plasma membrane|membrane fraction	calcium ion binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.0218)				GCTCCGAGGTGGGCCGGGCCGT	0.748													3	9					0	0	1	0	0
LMF1	64788	broad.mit.edu	37	16	1004443	1004443	+	Silent	SNP	G	A	A	rs139825245	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:1004443G>A	uc002ckj.2	-	2	421	c.417C>T	c.(415-417)TTC>TTT	p.F139F	LMF1_uc010brh.2_5'UTR|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_5'UTR|LMF1_uc010uuu.1_RNA|LMF1_uc010uuv.1_RNA	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	139	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				TGATCAGTACGAAAGACGAGA	0.557													11	20					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1258083	1258083	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:1258083C>T	uc002cks.2	+	16	3473	c.3225C>T	c.(3223-3225)CCC>CCT	p.P1075P	CACNA1H_uc002ckt.2_Silent_p.P1075P|CACNA1H_uc002cku.2_5'Flank|CACNA1H_uc010brj.2_5'Flank|CACNA1H_uc002ckv.2_5'Flank	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	1075	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TGTCCCCTCCCCTCATCATGT	0.657													6	5					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1265266	1265266	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:1265266C>T	uc002cks.2	+	29	5312	c.5064C>T	c.(5062-5064)ATC>ATT	p.I1688I	CACNA1H_uc002ckt.2_Silent_p.I1682I|CACNA1H_uc002cku.2_Silent_p.I394I|CACNA1H_uc010brj.2_Silent_p.I399I|CACNA1H_uc002ckv.2_Silent_p.I388I	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	1688	Helical; Name=S3 of repeat IV; (Potential).|IV.				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	ACCTGGCCATCGTGCTGCTGT	0.647													6	10					0	0	1	0	0
CLCN7	1186	broad.mit.edu	37	16	1498401	1498401	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:1498401G>A	uc002clv.2	-	21	2078	c.1968C>T	c.(1966-1968)TCC>TCT	p.S656S	CLCN7_uc010brq.1_Silent_p.S26S|CLCN7_uc002clu.2_Silent_p.S104S|CLCN7_uc002clw.2_Silent_p.S632S	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	656	Cytoplasmic (By similarity).|CBS 1.					integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				CGTTGTGATTGGACGCCGTGT	0.632													15	29					0	0	1	0	0
ZNF598	90850	broad.mit.edu	37	16	2050130	2050131	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:2050130_2050131GG>AA	uc002cof.1	-	11	1434_1435	c.1419_1420CC>TT	c.(1417-1422)ATCCCT>ATTTCT	p.P474S	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	474						intracellular	zinc ion binding			lung(1)|breast(1)	2						CCTCTGGCAGGGATGGCGTACG	0.673													23	24					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2169146	2169146	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:2169146T>A	uc002cos.1	-	3	537	c.328A>T	c.(328-330)ATA>TTA	p.I110L	PKD1_uc002cot.1_Missense_Mutation_p.I110L	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	110	LRR 2.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						TTAGCAAATATTCCTTCTTCT	0.478													4	9					0	0	1	0	0
CASKIN1	57524	broad.mit.edu	37	16	2229903	2229903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:2229903C>T	uc010bsg.1	-	18	3498	c.3466G>A	c.(3466-3468)GAG>AAG	p.E1156K		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	1156	Pro-rich.				signal transduction	cytoplasm				skin(2)	2						GCCTCCCGCTCCTTGGCCTTG	0.667													4	14					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2812251	2812251	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:2812251T>C	uc002crk.2	+	11	2271	c.1722T>C	c.(1720-1722)CGT>CGC	p.R574R	SRRM2_uc002crj.1_Silent_p.R478R|SRRM2_uc002crl.1_Silent_p.R574R|SRRM2_uc010bsu.1_Silent_p.R478R	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	574	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GTAGATCTCGTTCTAGAACAC	0.597													11	14					0	0	1	0	0
PAQR4	124222	broad.mit.edu	37	16	3021895	3021895	+	Silent	SNP	C	T	T	rs138017941	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:3021895C>T	uc002csj.3	+	3	1102	c.768C>T	c.(766-768)GCC>GCT	p.A256A	PAQR4_uc002csk.3_Silent_p.A217A|PAQR4_uc002csl.3_Silent_p.A182A|PAQR4_uc010uwm.1_Silent_p.A187A	NM_152341	NP_689554	Q8N4S7	PAQR4_HUMAN	progestin and adipoQ receptor family member IV	256	Helical; (Potential).					integral to membrane	receptor activity				0						AGCTGCACGCCGGCGTCGTGC	0.672													10	38					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3786779	3786779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:3786779C>T	uc002cvv.2	-	27	4636	c.4432G>A	c.(4432-4434)GAA>AAA	p.E1478K	CREBBP_uc002cvw.2_Missense_Mutation_p.E1440K	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1478	Cys/His-rich.|Interaction with TRERF1.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TCATCTCCTTCACTTGGAGGA	0.512			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				51	68					0	0	1	0	0
DNAJA3	9093	broad.mit.edu	37	16	4504910	4504910	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:4504910T>G	uc002cwk.2	+	11	1463	c.1438T>G	c.(1438-1440)TCA>GCA	p.S480A	DNAJA3_uc002cwl.2_Intron|DNAJA3_uc010uxk.1_Intron	NM_005147	NP_005138	Q96EY1	DNJA3_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 3	480					activation of caspase activity|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of cell proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein kinase activity|neuromuscular junction development|positive regulation of apoptosis|positive regulation of protein ubiquitination|protein folding|protein folding|protein stabilization|response to heat|response to interferon-gamma	cytosol|mitochondrial matrix|mitochondrial nucleoid|nucleus	ATP binding|heat shock protein binding|interferon-gamma receptor binding|metal ion binding|NF-kappaB binding|protein kinase binding			ovary(2)|breast(2)	4						AATGTTTACCTCATGATATCC	0.478													6	20					0	0	1	0	0
ABAT	18	broad.mit.edu	37	16	8866690	8866690	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:8866690C>T	uc002czc.3	+	12	1036	c.870C>T	c.(868-870)ATC>ATT	p.I290I	ABAT_uc002czd.3_Silent_p.I290I|ABAT_uc010buh.2_Silent_p.I232I|ABAT_uc010bui.2_Silent_p.I290I	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	290					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	TGGCCGGGATCATCGTGGAGC	0.557													17	41					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857462	9857462	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:9857462G>A	uc002czo.3	-	13	4487	c.3939C>T	c.(3937-3939)CTC>CTT	p.L1313L	GRIN2A_uc010uym.1_Silent_p.L1313L|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1313	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCCTGTCCTTGAGGCTTATGC	0.502													34	75					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857975	9857975	+	Silent	SNP	G	A	A	rs150487431		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:9857975G>A	uc002czo.3	-	13	3974	c.3426C>T	c.(3424-3426)CCC>CCT	p.P1142P	GRIN2A_uc010uym.1_Silent_p.P1142P|GRIN2A_uc010uyn.1_Silent_p.P985P|GRIN2A_uc002czr.3_Silent_p.P1142P	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1142	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCACGTTCTCGGGCAGGGTCA	0.522													30	93					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858383	9858383	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:9858383C>T	uc002czo.3	-	13	3566	c.3018G>A	c.(3016-3018)GCG>GCA	p.A1006A	GRIN2A_uc010uym.1_Silent_p.A1006A|GRIN2A_uc010uyn.1_Silent_p.A849A|GRIN2A_uc002czr.3_Silent_p.A1006A	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1006	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GTCTAGAGTTCGCTTTGGATT	0.507													34	66					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20559389	20559389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:20559389C>T	uc002dhj.3	-	9	1303	c.1093G>A	c.(1093-1095)GAA>AAA	p.E365K	ACSM2B_uc002dhk.3_Missense_Mutation_p.E365K|ACSM2B_uc010bwf.1_Missense_Mutation_p.E365K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	365					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GGTACCGTTTCTGTCTGGCCA	0.493													65	180					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20696586	20696586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:20696586C>T	uc002dhm.1	-	2	400	c.332G>A	c.(331-333)GGA>GAA	p.G111E	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.G111E	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	111					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CAGATGGTCTCCCTGTTGTAG	0.572													29	80					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21069505	21069505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:21069505G>A	uc010vbe.1	-	27	3826	c.3826C>T	c.(3826-3828)CAC>TAC	p.H1276Y		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1276	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AAGACCCAGTGATTTCGAGGG	0.507													9	31					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23226757	23226757	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:23226757G>A	uc002dlm.1	+	13	2056	c.1917G>A	c.(1915-1917)CAG>CAA	p.Q639Q		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	639	Cytoplasmic (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TTTCCAACCAGCTCACAGATA	0.572													22	56					0	0	1	0	0
CACNG3	10368	broad.mit.edu	37	16	24372881	24372881	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:24372881C>T	uc002dmf.2	+	4	1845	c.645C>T	c.(643-645)TTC>TTT	p.F215F		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	215					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		ACTCGGAGTTCCTGAAGAAAT	0.522													16	49					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147546	26147546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:26147546G>A	uc002dof.2	+	2	1740	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	450	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		TTTTCAGTGGGAACAGGAAGA	0.463													5	16					0	0	1	0	0
SBK1	388228	broad.mit.edu	37	16	28331844	28331844	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:28331844C>T	uc002dpd.2	+	4	1666	c.877C>T	c.(877-879)CAG>TAG	p.Q293*		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	293	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						GCGCATGTTCCAGCGCTTACT	0.657													7	14					0	0	1	0	0
KIF22	3835	broad.mit.edu	37	16	29816160	29816160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:29816160C>T	uc002dts.3	+	12	1727	c.1703C>T	c.(1702-1704)CCT>CTT	p.P568L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Missense_Mutation_p.P500L|KIF22_uc010vdw.1_Missense_Mutation_p.P500L|KIF22_uc010bzf.2_Missense_Mutation_p.P514L|KIF22_uc002dtt.1_3'UTR|KIF22_uc002frc.1_RNA|MAZ_uc002dtv.1_5'Flank|MAZ_uc010vdx.1_5'Flank|MAZ_uc002dtw.2_5'Flank|MAZ_uc002dtx.2_5'Flank|MAZ_uc002dty.2_5'Flank|MAZ_uc010bzg.2_5'Flank|MAZ_uc002dtz.1_5'Flank	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	568					blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						GCCCTAGAGCCTGAGGAGAAG	0.597													6	12					0	0	1	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29883583	29883583	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:29883583G>A	uc002duq.3	-	16	2868	c.2628C>T	c.(2626-2628)TTC>TTT	p.F876F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Silent_p.F819F|SEZ6L2_uc002dur.3_Silent_p.F806F|SEZ6L2_uc002dus.3_Silent_p.F775F|SEZ6L2_uc010vec.1_Silent_p.F889F|SEZ6L2_uc010ved.1_Silent_p.F845F	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	876	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						CCGAGAAGCCGAAAAGGGACT	0.602													22	34					0	0	1	0	0
TAOK2	9344	broad.mit.edu	37	16	29990326	29990326	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:29990326C>T	uc002dva.1	+	6	1167	c.384C>T	c.(382-384)ATC>ATT	p.I128I	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Silent_p.I128I|TAOK2_uc002dvc.1_Silent_p.I128I|TAOK2_uc010bzm.1_Silent_p.I128I|TAOK2_uc002dvd.1_5'Flank	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	128	Protein kinase.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						AGGTAGAGATCGCAGCTGTGA	0.577													27	93					0	0	1	0	0
TBC1D10B	26000	broad.mit.edu	37	16	30370638	30370638	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:30370638G>A	uc002dxu.2	-	7	1515	c.1497C>T	c.(1495-1497)CGC>CGT	p.R499R	TBC1D10B_uc002dxt.2_5'UTR	NM_015527	NP_056342	Q4KMP7	TB10B_HUMAN	TBC1 domain family, member 10B	499	Rab-GAP TBC.					cytoplasm	Rab GTPase activator activity				0			Colorectal(24;0.193)			GGGAGGCCCGGCGCAGGAGTG	0.642													3	4					0	0	1	0	0
SEPT1	1731	broad.mit.edu	37	16	30392507	30392507	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:30392507G>T	uc002dxy.2	-	7	686	c.499C>A	c.(499-501)CCA>ACA	p.P167T	SEPT1_uc002dxw.2_5'Flank|SEPT1_uc002dxx.2_5'UTR|SEPT1_uc010veq.1_3'UTR	NM_052838	NP_443070	Q8WYJ6	SEPT1_HUMAN	septin 1	167					cell cycle|cell division	microtubule organizing center|septin complex	GTP binding|protein binding			ovary(1)	1			Colorectal(24;0.193)			CCAATGACTGGGATGATGTTG	0.587													32	85					1.06801e-11	1.08457e-11	1	1	0
PHKB	5257	broad.mit.edu	37	16	47621611	47621611	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:47621611C>T	uc002eev.3	+	9	859	c.807C>T	c.(805-807)CTC>CTT	p.L269L	PHKB_uc002eeu.3_Silent_p.L262L	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	269					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				TTGTGGATCTCGATGCTCACA	0.353													12	41					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48119526	48119526	+	Missense_Mutation	SNP	C	T	T	rs139931213		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:48119526C>T	uc002efc.1	-	27	4152	c.3806G>A	c.(3805-3807)CGA>CAA	p.R1269Q	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1269	ABC transporter 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				GAGAAGAGCTCGGGCCACACA	0.448													14	69					0	0	1	0	0
ADCY7	113	broad.mit.edu	37	16	50339454	50339454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:50339454G>A	uc002egd.1	+	12	1904	c.1636G>A	c.(1636-1638)GAT>AAT	p.D546N	ADCY7_uc002egc.1_Missense_Mutation_p.D546N	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	546	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	TGACTCGTACGATGACGAGAT	0.607													50	117					0	0	1	0	0
SNX20	124460	broad.mit.edu	37	16	50707821	50707821	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:50707821G>A	uc002egk.2	-	4	620	c.447C>T	c.(445-447)TTC>TTT	p.F149F	SNX20_uc010vgp.1_Intron|SNX20_uc002egi.3_Intron	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	149	PX.				cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						TCTCCTCAGCGAAGTTCCCAG	0.617													19	22					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51173406	51173406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:51173406C>T	uc010vgs.1	-	2	2758	c.2727G>A	c.(2725-2727)ATG>ATA	p.M909I	SALL1_uc010vgr.1_Missense_Mutation_p.M812I|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	909					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TTTGGCTTTCCATGTCACCAC	0.577													22	36					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174183	51174183	+	Silent	SNP	G	A	A	rs138705495	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:51174183G>A	uc010vgs.1	-	2	1981	c.1950C>T	c.(1948-1950)GGC>GGT	p.G650G	SALL1_uc010vgr.1_Silent_p.G553G|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	650					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGCCCGCGGGGCCGCAGTCTG	0.622													16	42					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174819	51174819	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:51174819C>T	uc010vgs.1	-	2	1345	c.1314G>A	c.(1312-1314)GCG>GCA	p.A438A	SALL1_uc010vgr.1_Silent_p.A341A|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	438					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AAGTACTTTTCGCTTCAAAGG	0.488													25	88					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51175907	51175907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:51175907C>T	uc010vgs.1	-	2	257	c.226G>A	c.(226-228)GAA>AAA	p.E76K	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	76					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GCTGGATTTTCATTTACGATT	0.443													20	48					0	0	1	0	0
CES4	51716	broad.mit.edu	37	16	55806417	55806417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:55806417G>A	uc002eik.2	+	5	719	c.268G>A	c.(268-270)GAA>AAA	p.E90K	CES4_uc010cce.2_Missense_Mutation_p.E90K	NR_003276				RecName: Full=Inactive carboxylesterase 4; AltName: Full=Placental carboxylesterase 3;          Short=PCE-3; Flags: Precursor;												0						AGTGGGAGGAGAAAGTGTCTC	0.562													9	26					0	0	1	0	0
BBS2	583	broad.mit.edu	37	16	56519580	56519580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:56519580G>A	uc002ejd.2	-	16	2215	c.1981C>T	c.(1981-1983)CGC>TGC	p.R661C		NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	661					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						TTGTTACAGCGAATTTTATAT	0.378									Bardet-Biedl_syndrome				33	83					0	0	1	0	0
SLC12A3	6559	broad.mit.edu	37	16	56928554	56928554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:56928554C>T	uc010ccm.2	+	22	2662	c.2633C>T	c.(2632-2634)GCG>GTG	p.A878V	SLC12A3_uc002ekd.3_Missense_Mutation_p.A887V|SLC12A3_uc010ccn.2_Missense_Mutation_p.A886V	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	878	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	GAGAGAAAGGCGTAAGTGTGG	0.582													7	20					0	0	1	0	0
NLRC5	84166	broad.mit.edu	37	16	57070087	57070087	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:57070087G>A	uc002ekk.1	+	14	2928	c.2703G>A	c.(2701-2703)AGG>AGA	p.R901R	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Silent_p.R650R|NLRC5_uc002ekl.2_Silent_p.R706R|NLRC5_uc002ekm.2_Silent_p.R706R|NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	901	LRR 6.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				ACATCGCCAGGAAGCTGGAGT	0.617													13	25					0	0	1	0	0
NLRC5	84166	broad.mit.edu	37	16	57101722	57101722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:57101722C>T	uc002ekk.1	+	36	4706	c.4481C>T	c.(4480-4482)TCT>TTT	p.S1494F	NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekq.1_Missense_Mutation_p.S36F|NLRC5_uc002ekr.1_Missense_Mutation_p.S381F	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1494	LRR 16.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CTGTCCCTCTCTGAGCTGAAG	0.537													30	57					0	0	1	0	0
KATNB1	10300	broad.mit.edu	37	16	57775705	57775705	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:57775705C>T	uc002eml.1	+	3	521	c.147C>T	c.(145-147)TCC>TCT	p.S49S		NM_005886	NP_005877	Q9BVA0	KTNB1_HUMAN	katanin p80 subunit B 1	49	WD 1.|Interaction with centrosomes.|Interaction with dynein (By similarity).				cell division|mitosis|negative regulation of microtubule depolymerization|positive regulation of microtubule depolymerization|protein targeting	katanin complex|microtubule|spindle pole	microtubule binding|protein heterodimerization activity				0		all_neural(199;0.223)				ACCTGTGGTCCATCAACAAGC	0.662													5	16					0	0	1	0	0
CDH8	1006	broad.mit.edu	37	16	61747794	61747794	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:61747794G>A	uc002eog.1	-	10	1857	c.1605C>T	c.(1603-1605)CTC>CTT	p.L535L		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	535	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TTTCTGGAAGGAGACTGTATA	0.348													10	38					0	0	1	0	0
RRAD	6236	broad.mit.edu	37	16	66957471	66957471	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:66957471G>A	uc002eqn.2	-	4	749	c.597C>T	c.(595-597)ATC>ATT	p.I199I	RRAD_uc002eqo.2_Silent_p.I199I	NM_001128850	NP_001122322	P55042	RAD_HUMAN	Ras-related associated with diabetes	199					small GTPase mediated signal transduction	plasma membrane	calmodulin binding|GTP binding|GTPase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0862)|Epithelial(162;0.198)		TGCCCACGAGGATGATGGGCA	0.622													36	70					0	0	1	0	0
SLC9A5	6553	broad.mit.edu	37	16	67289037	67289037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:67289037C>T	uc002esm.2	+	3	667	c.604C>T	c.(604-606)CTC>TTC	p.L202F	SLC9A5_uc010cee.2_5'UTR|SLC9A5_uc010vji.1_5'UTR	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	202	Helical; (Potential).			L -> V (in Ref. 4; AAA87678).	regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		CAATGAGACTCTCTTTATCAT	0.587													24	64					0	0	1	0	0
SLC9A5	6553	broad.mit.edu	37	16	67304790	67304790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:67304790G>A	uc002esm.2	+	16	2431	c.2368G>A	c.(2368-2370)GGT>AGT	p.G790S	SLC9A5_uc010cee.2_Missense_Mutation_p.G495S|SLC9A5_uc010vji.1_Missense_Mutation_p.G294S	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	790					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		CATGCAGACGGGTTGGAACCA	0.607													23	57					0	0	1	0	0
KCTD19	146212	broad.mit.edu	37	16	67337091	67337091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:67337091C>T	uc002esu.2	-	4	652	c.601G>A	c.(601-603)GTG>ATG	p.V201M	KCTD19_uc002est.2_Translation_Start_Site|KCTD19_uc010vjj.1_Translation_Start_Site	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	201						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		ATGAGGGCCACCGTCTCAGCC	0.612													12	32					0	0	1	0	0
WWP2	11060	broad.mit.edu	37	16	69965095	69965095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:69965095C>T	uc002exu.1	+	15	1575	c.1486C>T	c.(1486-1488)CGG>TGG	p.R496W	WWP2_uc002exv.1_Missense_Mutation_p.R496W|WWP2_uc010vlm.1_Missense_Mutation_p.R380W|WWP2_uc010vln.1_Missense_Mutation_p.R114W|WWP2_uc002exw.1_Missense_Mutation_p.R57W|uc002exx.1_5'Flank|MIR140_hsa-mir-140|MI0000456_5'Flank	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	496					entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						CCGCAGTTTTCGGTGGAAGTA	0.488													38	85					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70889137	70889137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:70889137C>T	uc002ezr.2	-	73	12462	c.12334G>A	c.(12334-12336)GAG>AAG	p.E4112K	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4113										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AACCCCTGCTCCTCCTTGTTA	0.547													24	69					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70908799	70908799	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:70908799C>T	uc002ezr.2	-	63	10706	c.10578G>A	c.(10576-10578)GAG>GAA	p.E3526E		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3527										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGACTCCTAGCTCATCCTGCA	0.517													8	14					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70954575	70954575	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:70954575G>A	uc002ezr.2	-	46	7829	c.7701C>T	c.(7699-7701)TTC>TTT	p.F2567F		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2568										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGATGTCTAGGAAGGGTACGC	0.328													7	14					0	0	1	0	0
DHX38	9785	broad.mit.edu	37	16	72130758	72130759	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:72130758_72130759CC>TT	uc002fcb.2	+	3	716_717	c.361_362CC>TT	c.(361-363)CCG>TTG	p.P121L	TXNL4B_uc010vmn.1_5'Flank|TXNL4B_uc010vmo.1_5'Flank|DHX38_uc010vmp.1_Intron|DHX38_uc010cgn.1_RNA	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	121					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				TCCATCCCATCCGGGTGGTGTG	0.54													54	176					0	0	1	0	0
DHX38	9785	broad.mit.edu	37	16	72138394	72138394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:72138394C>T	uc002fcb.2	+	15	2375	c.2020C>T	c.(2020-2022)CGG>TGG	p.R674W	DHX38_uc010vmp.1_Intron	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	674	Helicase ATP-binding.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				GGTAGTGGCTCGGCGCTCAGA	0.607													16	18					0	0	1	0	0
FA2H	79152	broad.mit.edu	37	16	74752907	74752907	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:74752907G>A	uc002fde.1	-	5	833	c.765C>T	c.(763-765)GTC>GTT	p.V255V	FA2H_uc002fdd.1_5'Flank|FA2H_uc010vmy.1_RNA	NM_024306	NP_077282	Q7L5A8	FA2H_HUMAN	fatty acid 2-hydroxylase	255					cell death|electron transport chain|fatty acid biosynthetic process|sphingolipid metabolic process|transport	endoplasmic reticulum membrane|integral to membrane|microsome	heme binding|oxidoreductase activity				0						GGCCGTGCATGACGAAGTGCA	0.637													16	45					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77396127	77396127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:77396127G>A	uc002ffc.3	-	7	1510	c.1091C>T	c.(1090-1092)TCT>TTT	p.S364F	ADAMTS18_uc010chc.1_5'UTR|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S60F|ADAMTS18_uc010vni.1_Intron	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	364	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ACTATTCAGAGACTGGTCTGC	0.403													10	25					0	0	1	0	0
BCMO1	53630	broad.mit.edu	37	16	81303877	81303877	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:81303877C>T	uc002fgn.1	+	7	1175	c.957C>T	c.(955-957)ATC>ATT	p.I319I	BCMO1_uc010vnp.1_Silent_p.I250I	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	319					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						ACGGCTGCATCGTGTTTGACG	0.552													54	41					0	0	1	0	0
ATP2C2	9914	broad.mit.edu	37	16	84486808	84486808	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:84486808G>A	uc002fhx.2	+	19	1985	c.1896G>A	c.(1894-1896)GTG>GTA	p.V632V	ATP2C2_uc010chj.2_Silent_p.V632V|ATP2C2_uc002fhy.2_Silent_p.V649V|ATP2C2_uc002fhz.2_Silent_p.V481V	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	632	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						TGGACAGCGTGGAGAAGGGCG	0.612													21	36					0	0	1	0	0
USP10	9100	broad.mit.edu	37	16	84792359	84792359	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:84792359G>A	uc002fii.2	+	5	1372	c.1230G>A	c.(1228-1230)GTG>GTA	p.V410V	USP10_uc010voe.1_Silent_p.V414V|USP10_uc010vof.1_5'UTR|USP10_uc002fij.2_Intron	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	410					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						ATAAACCAGTGTCGTTGCAAC	0.448													30	72					0	0	1	0	0
USP10	9100	broad.mit.edu	37	16	84796689	84796689	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:84796689A>G	uc002fii.2	+	9	1791	c.1649A>G	c.(1648-1650)AAT>AGT	p.N550S	USP10_uc010voe.1_Missense_Mutation_p.N554S|USP10_uc010vof.1_Missense_Mutation_p.N112S|USP10_uc002fij.2_Missense_Mutation_p.N76S	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	550					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						TCACCAAGTAATGAAAGTAGG	0.433													22	80					0	0	1	0	0
ZDHHC7	55625	broad.mit.edu	37	16	85010020	85010020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:85010020G>A	uc002fiq.2	-	8	1209	c.856C>T	c.(856-858)CCC>TCC	p.P286S	ZDHHC7_uc010voi.1_Missense_Mutation_p.P323S|ZDHHC7_uc002fir.1_RNA	NM_017740	NP_060210	Q9NXF8	ZDHC7_HUMAN	zinc finger, DHHC-type containing 7 isoform 2	286						integral to membrane	acyltransferase activity|protein binding|zinc ion binding			large_intestine(1)	1						CCCACAAAGGGATTCATCCAG	0.582													20	53					0	0	1	0	0
GALNS	2588	broad.mit.edu	37	16	88902210	88902210	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:88902210G>A	uc002fly.3	-	7	770	c.681C>T	c.(679-681)TTC>TTT	p.F227F	GALNS_uc010cid.2_Silent_p.F233F|GALNS_uc002flz.3_5'UTR	NM_000512	NP_000503	P34059	GALNS_HUMAN	galactosamine (N-acetyl)-6-sulfate sulfatase	227						lysosome	metal ion binding|N-acetylgalactosamine-4-sulfatase activity|N-acetylgalactosamine-6-sulfatase activity			large_intestine(2)	2				BRCA - Breast invasive adenocarcinoma(80;0.0496)	Hyaluronidase(DB00070)	CCCAGTAGAGGAAAAAGGGGT	0.617													24	51					0	0	1	0	0
DPEP1	1800	broad.mit.edu	37	16	89702702	89702702	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:89702702C>T	uc010cin.2	+	4	471	c.268C>T	c.(268-270)CAG>TAG	p.Q90*	DPEP1_uc002fnr.3_Nonsense_Mutation_p.Q90*|DPEP1_uc002fns.3_Nonsense_Mutation_p.Q90*	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	90					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	CTGCGACACCCAGAACAAAGA	0.652													7	24					0	0	1	0	0
C17orf97	400566	broad.mit.edu	37	17	263507	263507	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:263507C>T	uc002frh.2	+	3	919	c.903C>T	c.(901-903)GCC>GCT	p.A301A	C17orf97_uc010vpz.1_RNA	NM_001013672	NP_001013694	Q6ZQX7	CQ097_HUMAN	hypothetical protein LOC400566	321	13.|20 X 10 AA approximative tandem repeat of A-L-K-G-F-H-P-D-P-E.									ovary(1)	1						ACCCCGAGGCCCTCAAGGGCT	0.667													23	39					0	0	1	0	0
TUSC5	286753	broad.mit.edu	37	17	1198819	1198819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:1198819G>A	uc002fsi.1	+	2	761	c.422G>A	c.(421-423)GGC>GAC	p.G141D		NM_172367	NP_758955	Q8IXB3	TUSC5_HUMAN	LOST1	141					response to biotic stimulus	integral to membrane				skin(2)	2				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		AACGTGGACGGCGCCCGGAGG	0.622													65	112					0	0	1	0	0
SCARF1	8578	broad.mit.edu	37	17	1538487	1538487	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:1538487G>A	uc002fsz.1	-	11	2108	c.2058C>T	c.(2056-2058)GGC>GGT	p.G686G	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Silent_p.G600G	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	686	Gly-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TGGTCACAGGGCCCGAGCTCT	0.657													15	38					0	0	1	0	0
TRPV3	162514	broad.mit.edu	37	17	3431398	3431398	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:3431398A>G	uc002fvt.1	-	11	1746	c.1424T>C	c.(1423-1425)CTG>CCG	p.L475P	TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Missense_Mutation_p.L459P|TRPV3_uc010vri.1_Missense_Mutation_p.L430P|TRPV3_uc010vrj.1_Missense_Mutation_p.L459P|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.L459P|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.L475P|TRPV3_uc002fvu.2_Missense_Mutation_p.L475P|TRPV3_uc010vrn.1_Missense_Mutation_p.L57P	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	475	Extracellular (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	CTTGTGCGTCAGGGCCAAGGG	0.592													3	45					0	0	1	0	0
ATP2A3	489	broad.mit.edu	37	17	3844589	3844589	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:3844589G>A	uc002fxb.1	-	14	1927	c.1776C>T	c.(1774-1776)ACC>ACT	p.T592T	ATP2A3_uc002fwx.1_Silent_p.T592T|ATP2A3_uc002fwy.1_Silent_p.T592T|ATP2A3_uc002fwz.1_Silent_p.T592T|ATP2A3_uc002fxa.1_Silent_p.T592T|ATP2A3_uc002fxc.1_Silent_p.T592T|ATP2A3_uc002fxd.1_Silent_p.T592T	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	592	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		AGCCCACGAAGGTCAGGTCCG	0.657													15	56					0	0	1	0	0
ZNF594	84622	broad.mit.edu	37	17	5085533	5085533	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:5085533G>A	uc010cla.1	-	2	2175	c.2019C>T	c.(2017-2019)ATC>ATT	p.I673I		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	673	C2H2-type 20.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						CTCCAGTATGGATTTTCTGGT	0.463													26	57					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5462569	5462569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:5462569C>T	uc002gci.2	-	4	2002	c.1447G>A	c.(1447-1449)GAG>AAG	p.E483K	NLRP1_uc002gcg.1_Missense_Mutation_p.E483K|NLRP1_uc002gck.2_Missense_Mutation_p.E483K|NLRP1_uc002gcj.2_Missense_Mutation_p.E483K|NLRP1_uc002gcl.2_Missense_Mutation_p.E483K|NLRP1_uc002gch.3_Missense_Mutation_p.E483K|NLRP1_uc010clh.2_Missense_Mutation_p.E483K	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	483	NACHT.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CTGCTGGACTCAGAGAACCCC	0.502													16	51					0	0	1	0	0
ASGR1	432	broad.mit.edu	37	17	7081841	7081841	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:7081841C>T	uc002ges.3	-	2	452	c.42G>A	c.(40-42)GAG>GAA	p.E14E	ASGR1_uc010clx.1_5'Flank	NM_001671	NP_001662	P07306	ASGR1_HUMAN	asialoglycoprotein receptor 1	14	Cytoplasmic (Probable).				receptor-mediated endocytosis	integral to plasma membrane	asialoglycoprotein receptor activity|metal ion binding|sugar binding			breast(1)|central_nervous_system(1)	2						GGTCACTCTCCTCATTGTCCA	0.398													17	29					0	0	1	0	0
GPS2	2874	broad.mit.edu	37	17	7217666	7217666	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:7217666G>A	uc002gfv.1	-	3	524	c.261C>T	c.(259-261)TTC>TTT	p.F87F	GPS2_uc002gfw.1_Silent_p.F49F|GPS2_uc002gfx.1_Silent_p.F87F|NEURL4_uc002gfy.1_RNA|GPS2_uc002gfz.1_Silent_p.F87F	NM_004489	NP_004480	Q13227	GPS2_HUMAN	G protein pathway suppressor 2	87					cell cycle|inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of transcription from RNA polymerase II promoter	transcriptional repressor complex	GTPase inhibitor activity|protein binding|transcription corepressor activity			ovary(2)|pancreas(1)	3		Prostate(122;0.157)				TGAGCTGCAGGAAAAGCTGGT	0.478													27	109					0	0	1	0	0
NEURL4	84461	broad.mit.edu	37	17	7230054	7230054	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:7230054G>A	uc002gga.1	-	4	1075	c.1068C>T	c.(1066-1068)CCC>CCT	p.P356P	NEURL4_uc002ggb.1_Silent_p.P356P|NEURL4_uc002ggc.1_5'UTR	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	356	NHR 2.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						TGTCCCGAAGGGGGCGATTGG	0.542													15	27					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7726784	7726784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:7726784G>A	uc002giu.1	+	73	11181	c.11167G>A	c.(11167-11169)GAC>AAC	p.D3723N	DNAH2_uc010cnm.1_Missense_Mutation_p.D661N	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3723					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GGGCCAAATGGACAATCCATG	0.448													33	88					0	0	1	0	0
MYH10	4628	broad.mit.edu	37	17	8409749	8409749	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:8409749G>A	uc002gll.2	-	25	3276	c.3180C>T	c.(3178-3180)CTC>CTT	p.L1060L	MYH10_uc002glm.2_Silent_p.L1091L|MYH10_uc010cnx.2_Silent_p.L1069L	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1060	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TCTCCCCGTCGAGTTTTCTTT	0.517													31	88					0	0	1	0	0
PIK3R6	146850	broad.mit.edu	37	17	8706699	8706699	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:8706699G>A	uc002glq.1	-	21	2397	c.2157C>T	c.(2155-2157)TCC>TCT	p.S719S	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	719					platelet activation	cytosol					0						ACGGTGCCTTGGACTTCTGGG	0.552													9	31					0	0	1	0	0
WDR16	146845	broad.mit.edu	37	17	9515667	9515667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:9515667G>A	uc002gly.2	+	8	965	c.896G>A	c.(895-897)CGA>CAA	p.R299Q	WDR16_uc002glz.2_Missense_Mutation_p.R231Q|WDR16_uc010coc.2_Missense_Mutation_p.R309Q	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	299	WD 4.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						ATCACACTTCGAGGAGAAGGA	0.428													32	43					0	0	1	0	0
WDR16	146845	broad.mit.edu	37	17	9538849	9538849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:9538849G>A	uc002gly.2	+	11	1517	c.1448G>A	c.(1447-1449)GGG>GAG	p.G483E	WDR16_uc002glz.2_Missense_Mutation_p.G415E|WDR16_uc010coc.2_Missense_Mutation_p.G493E	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	483	WD 8.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AGCACCGATGGGACTTGTATC	0.502													14	45					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10214431	10214431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10214431C>T	uc002gmk.1	-	33	4735	c.4645G>A	c.(4645-4647)GAA>AAA	p.E1549K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1549	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TCCACTTCTTCTAAGGCGACC	0.493													35	55					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10258027	10258027	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10258027G>A	uc002gmk.1	-	11	1065	c.975C>T	c.(973-975)ATC>ATT	p.I325I		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	325	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CACTGTCATCGATACTGGCTA	0.453													27	64					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10300232	10300232	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10300232A>G	uc002gmm.2	-	31	4345	c.4250T>C	c.(4249-4251)CTT>CCT	p.L1417P	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1417	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CGTCTTCTCAAGGGAAGCACA	0.498									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				23	52					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10315786	10315786	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10315786G>A	uc002gmm.2	-	14	1412	c.1317C>T	c.(1315-1317)TTC>TTT	p.F439F	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	439	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CCATCCACAGGAACATCTTCT	0.493									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				68	179					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10351250	10351250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10351250C>T	uc002gmn.2	-	34	4961	c.4850G>A	c.(4849-4851)AGG>AAG	p.R1617K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1617	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTTCTTGATCCTCAGAGCATC	0.463													60	122					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10352194	10352194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10352194C>T	uc002gmn.2	-	31	4463	c.4352G>A	c.(4351-4353)AGA>AAA	p.R1451K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1451	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GTCAAAGTTTCTTTGCTTCTT	0.438													28	61					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10428663	10428663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10428663C>T	uc010coi.2	-	33	4668	c.4540G>A	c.(4540-4542)GAG>AAG	p.E1514K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1514K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1514	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCAGAAATCTCCTCTGTTGTT	0.378													13	42					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10533023	10533023	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10533023T>C	uc002gmq.1	-	39	5764	c.5687A>G	c.(5686-5688)AAA>AGA	p.K1896R		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1896	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CTTTCGGAATTTGGTGAGATG	0.532													26	56					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10555849	10555849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10555849G>A	uc002gmq.1	-	3	313	c.236C>T	c.(235-237)GCC>GTC	p.A79V		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	79	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						GGGGTTCATGGCGTACACATC	0.473													43	81					0	0	1	0	0
SCO1	6341	broad.mit.edu	37	17	10590109	10590109	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:10590109G>A	uc002gmr.3	-	5	767	c.706C>T	c.(706-708)CAA>TAA	p.Q236*	SCO1_uc002gms.3_Nonsense_Mutation_p.Q205*	NM_004589	NP_004580	O75880	SCO1_HUMAN	cytochrome oxidase deficient homolog 1	236					cellular copper ion homeostasis|copper ion transport|generation of precursor metabolites and energy|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0						CTGGCCACTTGATCGACCTCT	0.433													42	89					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11666862	11666862	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:11666862G>A	uc002gne.2	+	36	7169	c.7101G>A	c.(7099-7101)AAG>AAA	p.K2367K	DNAH9_uc010coo.2_Silent_p.K1661K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2367					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACTGCCCTAAGGAAATTTATG	0.488													23	51					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11790187	11790187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:11790187G>A	uc002gne.2	+	57	11085	c.11017G>A	c.(11017-11019)GAG>AAG	p.E3673K	DNAH9_uc010coo.2_Missense_Mutation_p.E2967K|DNAH9_uc002gnf.2_5'UTR|DNAH9_uc010vvh.1_Missense_Mutation_p.E26K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3673	Potential.				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CGAGGCCCGAGAGCACTACCG	0.527													21	43					0	0	1	0	0
MPRIP	23164	broad.mit.edu	37	17	17075095	17075095	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:17075095C>T	uc002gqu.1	+	16	2283	c.2227C>T	c.(2227-2229)CAG>TAG	p.Q743*	MPRIP_uc002gqv.1_Nonsense_Mutation_p.Q743*|MPRIP_uc002gqw.1_Nonsense_Mutation_p.Q498*|MPRIP_uc002gqx.1_Nonsense_Mutation_p.Q972*|MPRIP_uc002gqy.1_Nonsense_Mutation_p.Q972*|MPRIP_uc010cpl.1_5'Flank|MPRIP_uc010cpm.1_5'Flank	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	743	Interaction with RHOA.|Potential.					cytoplasm|cytoskeleton	actin binding				0						TGAAGATCTCCAGAGGCAGCA	0.547													61	142					0	0	1	0	0
NT5M	56953	broad.mit.edu	37	17	17248135	17248135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:17248135C>T	uc002grf.2	+	4	642	c.457C>T	c.(457-459)CCT>TCT	p.P153S	NT5M_uc002gre.2_Missense_Mutation_p.P153S|NT5M_uc002grg.2_Missense_Mutation_p.P153S	NM_020201	NP_064586	Q9NPB1	NT5M_HUMAN	5',3'-nucleotidase, mitochondrial precursor	153					DNA replication|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	5'-nucleotidase activity|metal ion binding|nucleotide binding				0						GTACTTTGGCCCTGACTTTCT	0.567													35	98					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18025411	18025412	+	Silent	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:18025411_18025412CC>TT	uc010vxh.1	+	2	3635_3636	c.3297_3298CC>TT	c.(3295-3300)CCCCTG>CCTTTG	p.1099_1100PL>PL		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1099_1100	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCCCAGAGCCCCTGCCCAAGGG	0.683													27	61					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18045494	18045494	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:18045494C>T	uc010vxh.1	+	23	6089	c.5751C>T	c.(5749-5751)TTC>TTT	p.F1917F		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1917	Neck or regulatory domain.|IQ 1.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GTGGCTTCTTCATTAAGCGGC	0.572													23	37					0	0	1	0	0
FLII	2314	broad.mit.edu	37	17	18150582	18150582	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:18150582G>A	uc002gsr.1	-	21	2628	c.2577C>T	c.(2575-2577)CTC>CTT	p.L859L	FLII_uc002gsq.1_Silent_p.L730L|FLII_uc010cpy.1_Silent_p.L848L|FLII_uc010vxn.1_Silent_p.L828L|FLII_uc010vxo.1_Silent_p.L804L|FLII_uc002gss.1_Silent_p.L858L	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	859					multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					CCTTCCCGGAGAGACCCGGGC	0.607													22	60					0	0	1	0	0
SMCR7	125170	broad.mit.edu	37	17	18167891	18167891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:18167891C>T	uc002gst.2	+	4	1389	c.1178C>T	c.(1177-1179)ACG>ATG	p.T393M	SMCR7_uc002gsu.2_3'UTR|SMCR7_uc010vxq.1_Missense_Mutation_p.T404M	NM_139162	NP_631901	Q96C03	SMCR7_HUMAN	Smith-Magenis syndrome chromosome region,	393						integral to membrane	protein binding				0	all_neural(463;0.228)					GTGGATTGGACGGAGGAGGCC	0.667													26	66					0	0	1	0	0
FAM83G	644815	broad.mit.edu	37	17	18874806	18874806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:18874806G>A	uc002guw.2	-	6	2505	c.2338C>T	c.(2338-2340)CCG>TCG	p.P780S	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	780										ovary(1)|central_nervous_system(1)	2						AAGGGACTCGGATGCTCCTCG	0.622													48	126					0	0	1	0	0
ALDH3A1	218	broad.mit.edu	37	17	19646547	19646547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:19646547G>A	uc010cqu.2	-	2	722	c.392C>T	c.(391-393)GCA>GTA	p.A131V	ALDH3A1_uc010vzd.1_Missense_Mutation_p.A131V|ALDH3A1_uc002gwj.2_Missense_Mutation_p.A131V|ALDH3A1_uc010cqv.2_Missense_Mutation_p.A131V|ALDH3A1_uc002gwk.2_Nonsense_Mutation_p.Q48*|ALDH3A1_uc002gwl.1_Missense_Mutation_p.A58V	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	131					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	CCATGCACCTGCAGCGATGGC	0.642													12	18					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	21731246	21731246	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:21731246A>G	uc002gyy.3	+	2	673	c.548A>G	c.(547-549)CAA>CGA	p.Q183R						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GCCAAGATCCAAGATAAAGAA	0.522													10	53					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	21731248	21731248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:21731248G>A	uc002gyy.3	+	2	675	c.550G>A	c.(550-552)GAT>AAT	p.D184N						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		CAAGATCCAAGATAAAGAAGG	0.527													9	56					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	21731256	21731256	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:21731256A>G	uc002gyy.3	+	2	683	c.558A>G	c.(556-558)GAA>GAG	p.E186E						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		AAGATAAAGAAGGCATCCCCC	0.532													9	57					0	0	1	0	0
FOXN1	8456	broad.mit.edu	37	17	26862111	26862111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:26862111G>A	uc010crm.2	+	8	1720	c.1522G>A	c.(1522-1524)GAG>AAG	p.E508K	FOXN1_uc002hbj.2_Missense_Mutation_p.E508K	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	508					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					GCTACTGGCCGAGCCTTCCCC	0.652													14	31					0	0	1	0	0
RAB34	83871	broad.mit.edu	37	17	27043983	27043983	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:27043983C>T	uc002hce.2	-	2	708	c.84G>A	c.(82-84)GGG>GGA	p.G28G	RAB34_uc002hcg.2_Silent_p.G28G|RAB34_uc002hcf.2_Silent_p.G28G|RAB34_uc010was.1_Silent_p.G85G|RAB34_uc010wat.1_Silent_p.G85G|RAB34_uc002hch.2_Silent_p.G28G|RAB34_uc010wau.1_Silent_p.G28G|RAB34_uc010wav.1_Silent_p.G85G	NM_031934	NP_114140	Q9BZG1	RAB34_HUMAN	Ras-related protein RAB34 isoform 1	28					protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	Lung NSC(42;0.00431)					AGTCTTTGTGCCCGTGCAAAG	0.637													4	96					0	0	1	0	0
NEK8	284086	broad.mit.edu	37	17	27064464	27064464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:27064464G>A	uc002hcp.2	+	5	759	c.759G>A	c.(757-759)ATG>ATA	p.M253I		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	253	Protein kinase.					cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					GCCACATCATGGCACAGCCCC	0.657													18	35					0	0	1	0	0
EFCAB5	374786	broad.mit.edu	37	17	28417578	28417578	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:28417578A>T	uc002het.2	+	20	4015	c.3823A>T	c.(3823-3825)ATG>TTG	p.M1275L	EFCAB5_uc010cse.2_Missense_Mutation_p.M1030L|EFCAB5_uc010csf.2_Intron	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	1275							calcium ion binding			ovary(1)|skin(1)	2						CCAAAATAGGATGTTGTTGTG	0.433													40	108					0	0	1	0	0
SLC6A4	6532	broad.mit.edu	37	17	28537578	28537578	+	Silent	SNP	G	T	T	rs140140655		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:28537578G>T	uc002hey.3	-	11	1948	c.1404C>A	c.(1402-1404)GCC>GCA	p.A468A	SLC6A4_uc010csg.2_RNA	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	468	Helical; Name=9; (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	TGATGACCACGGCGAGCACGA	0.597													4	107					1	1	1	1	0
SLC6A4	6532	broad.mit.edu	37	17	28539843	28539843	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:28539843G>A	uc002hey.3	-	9	1663	c.1119C>T	c.(1117-1119)TTC>TTT	p.F373F	SLC6A4_uc010csg.2_5'Flank	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	373	Helical; Name=7; (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	ATCCCGAAACGAAGCTCGTCA	0.547													19	36					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29533315	29533315	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:29533315C>T	uc002hgg.2	+	12	1651	c.1318C>T	c.(1318-1320)CGA>TGA	p.R440*	NF1_uc002hge.1_Nonsense_Mutation_p.R440*|NF1_uc002hgf.1_Nonsense_Mutation_p.R440*|NF1_uc002hgh.2_Nonsense_Mutation_p.R440*|NF1_uc010csn.1_Nonsense_Mutation_p.R300*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	440					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GGTTGAACTTCGAAATATGTT	0.398			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			28	67					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29557904	29557904	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:29557904C>A	uc002hgg.2	+	24	3491	c.3158C>A	c.(3157-3159)TCA>TAA	p.S1053*	NF1_uc002hgh.2_Nonsense_Mutation_p.S1053*|NF1_uc010csn.1_Nonsense_Mutation_p.S913*|NF1_uc002hgi.1_Nonsense_Mutation_p.S86*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1053					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATGGGAACATCAAACCAAGCA	0.358			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			11	13					0.010729	0.0107856	1	1	0
LRRC37B	114659	broad.mit.edu	37	17	30348607	30348607	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:30348607C>T	uc002hgu.2	+	1	453	c.442C>T	c.(442-444)CAG>TAG	p.Q148*	LRRC37B_uc010wbx.1_Nonsense_Mutation_p.Q66*|LRRC37B_uc010csu.2_Nonsense_Mutation_p.Q148*	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	148	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				GGCCCTAGTTCAGCTTCCTCG	0.507													26	66					0	0	1	0	0
ACCN1	40	broad.mit.edu	37	17	32483156	32483156	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:32483156G>A	uc002hhu.2	-	1	670	c.396C>T	c.(394-396)TCC>TCT	p.S132S		NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	132	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	CCTCCAGCACGGAGGGGTCAG	0.612													37	57					0	0	1	0	0
TBC1D3B	414059	broad.mit.edu	37	17	34499226	34499226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:34499226C>T	uc002hky.2	-	7	635	c.485G>A	c.(484-486)CGA>CAA	p.R162Q	uc002hla.1_5'Flank|uc002hlc.2_5'Flank	NM_001001417	NP_001001417	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3B	162	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGTTCCGTATCGATCCCTGAA	0.567													50	556					0	0	1	0	0
ACACA	31	broad.mit.edu	37	17	35609886	35609886	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:35609886A>G	uc002hnm.2	-	15	1983	c.1792T>C	c.(1792-1794)TTA>CTA	p.L598L	ACACA_uc002hnk.2_Silent_p.L520L|ACACA_uc002hnl.2_Silent_p.L540L|ACACA_uc002hnn.2_Silent_p.L598L|ACACA_uc002hno.2_Silent_p.L635L|ACACA_uc010cuz.2_Silent_p.L598L	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	598	Biotin carboxylation.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TCAGTCTCTAACAATTTGATC	0.433													40	67					0	0	1	0	0
HNF1B	6928	broad.mit.edu	37	17	36099564	36099564	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:36099564C>T	uc002hok.3	-	2	632	c.411G>A	c.(409-411)AGG>AGA	p.R137R	HNF1B_uc010wdi.1_Silent_p.R137R	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	137					endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			CGACCACCTCCCTCTGGGGGA	0.552									Hereditary_Prostate_Cancer				236	475					0	0	1	0	0
KRTAP3-1	83896	broad.mit.edu	37	17	39165283	39165283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:39165283G>A	uc002hvt.1	-	1	84	c.44C>T	c.(43-45)CCT>CTT	p.P15L		NM_031958	NP_114164	Q9BYR8	KRA31_HUMAN	keratin associated protein 3.1	15	4 X 5 AA repeats of C-C-X(3).					keratin filament	structural molecule activity				0		Breast(137;0.00043)				GGTGGTGGCAGGGCCGGTGGG	0.562													42	74					0	0	1	0	0
KRTAP1-1	81851	broad.mit.edu	37	17	39197308	39197308	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:39197308G>A	uc002hvw.1	-	1	406	c.342C>T	c.(340-342)ACC>ACT	p.T114T		NM_030967	NP_112229	Q07627	KRA11_HUMAN	keratin associated protein 1-1	114						extracellular region|keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ACCTGATACGGGTGCTCACAG	0.662													18	33					0	0	1	0	0
KRT33B	3884	broad.mit.edu	37	17	39520160	39520160	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:39520160G>A	uc002hwl.2	-	7	1188	c.1143C>T	c.(1141-1143)CCC>CCT	p.P381P		NM_002279	NP_002270	Q14525	KT33B_HUMAN	type I hair keratin 3B	381	Tail.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				AGGATCCAATGGGCTTTTCAC	0.542													26	54					0	0	1	0	0
KRT38	8687	broad.mit.edu	37	17	39597008	39597008	+	Missense_Mutation	SNP	G	A	A	rs148366219		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:39597008G>A	uc002hwq.1	-	1	589	c.166C>T	c.(166-168)CGT>TGT	p.R56C		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	56	Head.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				GACCCCACACGGACTCGGTTG	0.632													18	53					0	0	1	0	0
KRT36	8689	broad.mit.edu	37	17	39645872	39645872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:39645872C>T	uc002hwt.2	-	1	245	c.245G>A	c.(244-246)GGC>GAC	p.G82D		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	82	Head.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				GCAGAACCAGCCCCCGCTCCC	0.612													31	77					0	0	1	0	0
KRT14	3861	broad.mit.edu	37	17	39742796	39742796	+	Silent	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:39742796A>C	uc002hxf.1	-	1	352	c.291T>G	c.(289-291)GGT>GGG	p.G97G	JUP_uc010wfs.1_Intron|KRT14_uc010cxp.1_Silent_p.G97G	NM_000526	NP_000517	P02533	K1C14_HUMAN	keratin 14	97	Head.				epidermis development|hemidesmosome assembly|intermediate filament bundle assembly	cytosol|keratin filament|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.000307)				caaagccaccacccaagccag	0.353													9	59					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	40179017	40179018	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:40179017_40179018GG>AA	uc002hyu.2	-	4	565_566	c.422_423CC>TT	c.(421-423)GCC>GTT	p.A141V						RecName: Full=Zinc finger protein 385C;																		AGAGGGTAGTGGCTGCTGTAGG	0.683													10	24					0	0	1	0	0
NBR1	4077	broad.mit.edu	37	17	41346379	41346379	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:41346379C>T	uc010czd.2	+	13	1677	c.1537C>T	c.(1537-1539)CTG>TTG	p.L513L	NBR1_uc010diz.2_Silent_p.L513L|NBR1_uc010whu.1_Silent_p.L513L|NBR1_uc010whv.1_Silent_p.L513L|NBR1_uc010whw.1_Silent_p.L492L|NBR1_uc010whx.1_Silent_p.L322L	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	513					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		AACTTTTCTTCTGGCTAAAGA	0.453													27	48					0	0	1	0	0
MPP2	4355	broad.mit.edu	37	17	41981850	41981850	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:41981850G>A	uc010wip.1	-	2	171	c.114C>T	c.(112-114)TTC>TTT	p.F38F	MPP2_uc010wim.1_5'Flank|MPP2_uc002ieo.1_5'UTR|MPP2_uc010win.1_5'UTR|MPP2_uc010wio.1_Intron|MPP2_uc010czm.1_Intron	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	Error:Variant_position_missing_in_Q14168_after_alignment					signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		CAAGGGCTCTGAAACGTCTCT	0.552													28	36					0	0	1	0	0
C17orf53	78995	broad.mit.edu	37	17	42225865	42225865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:42225865C>T	uc002ifi.1	+	3	879	c.694C>T	c.(694-696)CCT>TCT	p.P232S	C17orf53_uc010czq.1_Missense_Mutation_p.P232S|C17orf53_uc002ifj.1_Missense_Mutation_p.P232S|C17orf53_uc002ifk.1_RNA	NM_024032	NP_076937	Q8N3J3	CQ053_HUMAN	hypothetical protein LOC78995	232											0		Breast(137;0.0364)|Prostate(33;0.0376)		BRCA - Breast invasive adenocarcinoma(366;0.114)		GTCTCTAGATCCTGTCATCCA	0.552													51	109					0	0	1	0	0
ASB16	92591	broad.mit.edu	37	17	42249505	42249505	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:42249505C>T	uc002ifl.1	+	2	477	c.393C>T	c.(391-393)ATC>ATT	p.I131I	ASB16_uc002ifm.1_RNA	NM_080863	NP_543139	Q96NS5	ASB16_HUMAN	ankyrin repeat and SOCS box-containing protein	131	ANK 2.				intracellular signal transduction		protein binding			kidney(2)	2		Breast(137;0.00765)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.114)		GACACCTGATCCGGCAGGGAG	0.652													33	58					0	0	1	0	0
PLEKHM1	9842	broad.mit.edu	37	17	43530788	43530788	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:43530788G>T	uc002ija.2	-	7	2600	c.2430C>A	c.(2428-2430)TTC>TTA	p.F810L	PLEKHM1_uc010wjm.1_Missense_Mutation_p.F782L|PLEKHM1_uc002ijb.2_Missense_Mutation_p.F285L|PLEKHM1_uc010wjn.1_Missense_Mutation_p.F759L|PLEKHM1_uc002ijc.2_Missense_Mutation_p.F264L	NM_014798	NP_055613	Q9Y4G2	PKHM1_HUMAN	pleckstrin homology domain containing, family M	810					intracellular signal transduction	cytoplasm	metal ion binding				0	Renal(3;0.0405)					ACTGCAGCAGGAAGCCATTCT	0.607													10	21					2.80697e-09	2.84498e-09	1	1	0
IGF2BP1	10642	broad.mit.edu	37	17	47123314	47123314	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:47123314G>A	uc002iom.2	+	13	1792	c.1458G>A	c.(1456-1458)GTG>GTA	p.V486V	IGF2BP1_uc010dbj.2_Silent_p.V347V	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	486	Sufficient for nuclear export.|Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).			V->A: Loss of export activity.	CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						AGGAGGAAGTGAAGCTGGAGA	0.512													10	30					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48605530	48605530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:48605530G>A	uc010wmr.1	+	16	2597	c.2435G>A	c.(2434-2436)CGA>CAA	p.R812Q	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	775					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CAGCTGTGGCGAGATGTGATT	0.532													12	17					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51900463	51900463	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:51900463C>T	uc002iua.2	+	1	225	c.69C>T	c.(67-69)TTC>TTT	p.F23F		NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	23					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						AGCCACATTTCGGAGACATCC	0.562													15	38					0	0	1	0	0
MMD	23531	broad.mit.edu	37	17	53481219	53481219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:53481219G>A	uc002iui.2	-	5	640	c.355C>T	c.(355-357)CGT>TGT	p.R119C		NM_012329	NP_036461	Q15546	PAQRB_HUMAN	monocyte to macrophage	119	Helical; (Potential).				cytolysis	integral to plasma membrane|late endosome membrane|lysosomal membrane|membrane fraction	receptor activity				0						CCAAGTTCACGAAGATTTAAC	0.383													21	55					0	0	1	0	0
TMEM100	55273	broad.mit.edu	37	17	53798339	53798339	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:53798339G>A	uc002iuj.3	-	2	404	c.93C>T	c.(91-93)ATC>ATT	p.I31I	TMEM100_uc002iuk.3_Silent_p.I31I	NM_018286	NP_060756	Q9NV29	TM100_HUMAN	transmembrane protein 100	31						integral to membrane					0						GGACTGTGGTGATCACAACTT	0.537													58	98					0	0	1	0	0
TMEM100	55273	broad.mit.edu	37	17	53798372	53798372	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:53798372C>T	uc002iuj.3	-	2	371	c.60G>A	c.(58-60)ACG>ACA	p.T20T	TMEM100_uc002iuk.3_Silent_p.T20T	NM_018286	NP_060756	Q9NV29	TM100_HUMAN	transmembrane protein 100	20						integral to membrane					0						TCTTCTCCATCGTCGCTGCCA	0.522													57	103					0	0	1	0	0
CUEDC1	404093	broad.mit.edu	37	17	55962751	55962751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:55962751G>A	uc002ivd.1	-	2	894	c.175C>T	c.(175-177)CCC>TCC	p.P59S	CUEDC1_uc002ive.1_Missense_Mutation_p.P59S	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1	59	CUE.									skin(2)	2						TCCATGTTGGGGAACATGGTC	0.572													25	81					0	0	1	0	0
MPO	4353	broad.mit.edu	37	17	56348085	56348085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:56348085G>A	uc002ivu.1	-	12	2347	c.2170C>T	c.(2170-2172)CCC>TCC	p.P724S		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	724					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	AAGTCCCGGGGATATGAGTTG	0.562													15	28					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56389042	56389042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:56389042G>A	uc002ivx.3	-	18	3842	c.2971C>T	c.(2971-2973)CCC>TCC	p.P991S	BZRAP1_uc010dcs.2_Missense_Mutation_p.P931S|BZRAP1_uc010wnt.1_Missense_Mutation_p.P991S	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	991	Fibronectin type-III 3.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCAGGGGAGGGCCCAGGCTCG	0.617													13	27					0	0	1	0	0
PRR11	55771	broad.mit.edu	37	17	57274953	57274953	+	Silent	SNP	C	T	T	rs140410241	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:57274953C>T	uc002ixf.1	+	8	985	c.906C>T	c.(904-906)GTC>GTT	p.V302V	PRR11_uc002ixg.1_RNA	NM_018304	NP_060774	Q96HE9	PRR11_HUMAN	proline rich 11	302										ovary(2)	2	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					TTAGAAAAGTCGATGTAGAGA	0.299													10	48					0	0	1	0	0
USP32	84669	broad.mit.edu	37	17	58282963	58282963	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:58282963G>A	uc002iyo.1	-	26	3380	c.3094C>T	c.(3094-3096)CTA>TTA	p.L1032L	USP32_uc002iyn.1_Silent_p.L702L	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	1032					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			GGTCGGGGTAGGTCCCCATTG	0.413													31	96					0	0	1	0	0
BRIP1	83990	broad.mit.edu	37	17	59761459	59761459	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:59761459A>C	uc002izk.1	-	20	3089	c.2948T>G	c.(2947-2949)ATT>AGT	p.I983S		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	983	Interaction with BRCA1.				DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						GGAAATCACAATTTTTTCTGC	0.348			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				15	25					0	0	1	0	0
MED13	9969	broad.mit.edu	37	17	60033148	60033148	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:60033148A>T	uc002izo.2	-	25	5752	c.5675T>A	c.(5674-5676)CTC>CAC	p.L1892H		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1892					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						CATGTCTTTGAGCCTTTTACT	0.398													18	27					0	0	1	0	0
MAP3K3	4215	broad.mit.edu	37	17	61744305	61744305	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:61744305T>C	uc002jbg.2	+	6	706	c.387T>C	c.(385-387)AGT>AGC	p.S129S	MAP3K3_uc002jbe.2_Silent_p.S160S|MAP3K3_uc002jbf.2_Silent_p.S160S|MAP3K3_uc002jbh.2_Silent_p.S160S|MAP3K3_uc010wpo.1_Silent_p.S44S|MAP3K3_uc010wpp.1_Silent_p.S129S	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	129					MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						TACAGAACAGTTCCTCTCCCC	0.527													15	56					0	0	1	0	0
PSMC5	5705	broad.mit.edu	37	17	61908517	61908517	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:61908517T>C	uc002jcb.2	+	8	842	c.801T>C	c.(799-801)AGT>AGC	p.S267S	PSMC5_uc010ddy.2_Silent_p.S244S|PSMC5_uc010ddz.2_Silent_p.S188S|PSMC5_uc002jcc.2_Silent_p.S259S|PSMC5_uc002jcd.2_Silent_p.S259S	NM_002805	NP_002796	P62195	PRS8_HUMAN	proteasome 26S ATPase subunit 5	267					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of programmed cell death|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|thyrotropin-releasing hormone receptor binding|transcription cofactor activity|transcription factor binding			large_intestine(1)	1						GAGGGGACAGTGAAGTGCAGC	0.567													36	113					0	0	1	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	G	G	rs138671696	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:62968690A>G	uc002jez.3	-	4		c.641T>C			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AAAATTCCACAAGTCTCTTGG	0.373													5	108					0	0	1	0	0
APOH	350	broad.mit.edu	37	17	64225497	64225497	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:64225497T>C	uc002jfn.3	-	1	60	c.1A>G	c.(1-3)ATG>GTG	p.M1V		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	1					blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			GGAGAAATCATTGTGGATGAG	0.378													6	12					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66871838	66871838	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:66871838C>T	uc002jhp.2	-	34	4466	c.4287G>A	c.(4285-4287)AGG>AGA	p.R1429R	ABCA8_uc002jhq.2_Silent_p.R1469R|ABCA8_uc010wqq.1_Silent_p.R1464R	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1429	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GGAGGGCACCCCTTTCCGTGT	0.502													14	32					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67119506	67119506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:67119506G>A	uc002jhw.1	-	10	1485	c.1310C>T	c.(1309-1311)TCA>TTA	p.S437L		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	437					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					ACAAGATGATGAATTCAAGAA	0.358													16	22					0	0	1	0	0
TMEM104	54868	broad.mit.edu	37	17	72832415	72832415	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:72832415C>T	uc002jls.3	+	10	1242	c.1080C>T	c.(1078-1080)TTC>TTT	p.F360F	TMEM104_uc010wrf.1_Intron|TMEM104_uc010wrg.1_Intron|TMEM104_uc010dfx.2_Silent_p.F360F	NM_017728	NP_060198	Q8NE00	TM104_HUMAN	transmembrane protein 104	360	Helical; (Potential).					integral to membrane					0	all_lung(278;0.23)					TGGGCCTCTTCCCCGTCTTCA	0.627													66	147					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73488651	73488651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:73488651C>T	uc002jnz.3	+	15	1968	c.1693C>T	c.(1693-1695)CCC>TCC	p.P565S	KIAA0195_uc010wsa.1_Missense_Mutation_p.P575S|KIAA0195_uc010wsb.1_Missense_Mutation_p.P205S|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	565					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCAGCAGAACCCCTCCTGCAT	0.592													31	55					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73566310	73566310	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:73566310C>T	uc002joh.2	+	15	2002	c.1848C>T	c.(1846-1848)CAC>CAT	p.H616H	LLGL2_uc002joi.2_Silent_p.H616H|LLGL2_uc010dgg.1_Silent_p.H616H|LLGL2_uc002joj.2_Silent_p.H605H|LLGL2_uc010wsd.1_Silent_p.H243H	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	616	WD 10.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			TCTTTGACCACCAGCAGCGGC	0.672													4	17					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73727398	73727398	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:73727398G>A	uc002jpg.2	+	10	1351	c.1164G>A	c.(1162-1164)AAG>AAA	p.K388K	ITGB4_uc002jph.2_Silent_p.K388K|ITGB4_uc010dgo.2_Silent_p.K388K|ITGB4_uc002jpi.3_Silent_p.K388K|ITGB4_uc010dgp.1_Silent_p.K388K|ITGB4_uc002jpj.2_Silent_p.K388K|ITGB4_uc010wsh.1_5'Flank	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	388	Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TCACCTCCAAGATGTTCCAGA	0.637													22	66					0	0	1	0	0
CDK3	1018	broad.mit.edu	37	17	73998027	73998027	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:73998027C>T	uc010dgt.2	+	3	265	c.189C>T	c.(187-189)ATC>ATT	p.I63I	CDK3_uc002jqg.3_Silent_p.I91I	NM_001258	NP_001249	Q00526	CDK3_HUMAN	cyclin-dependent kinase 3	63	Protein kinase.				cell division|cell proliferation|mitosis		ATP binding|cyclin-dependent protein kinase activity			central_nervous_system(1)	1						ACCCCAACATCGTCCGGTGAG	0.597													13	35					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74006303	74006303	+	Missense_Mutation	SNP	C	T	T	rs139325619		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:74006303C>T	uc002jqi.2	-	22	3211	c.2983G>A	c.(2983-2985)GTG>ATG	p.V995M	EVPL_uc010wss.1_Missense_Mutation_p.V1017M|EVPL_uc010wst.1_Missense_Mutation_p.V465M	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	995	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TGGGCTGCCACTTCCAGGTCT	0.662													30	57					0	0	1	0	0
C1QTNF1	114897	broad.mit.edu	37	17	77042653	77042653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:77042653G>A	uc002jwp.2	+	3	512	c.172G>A	c.(172-174)GAA>AAA	p.E58K	C1QTNF1_uc002jwq.2_5'UTR|C1QTNF1_uc002jwr.3_Missense_Mutation_p.E68K|C1QTNF1_uc002jws.2_Missense_Mutation_p.E58K|C1QTNF1_uc002jwt.2_Missense_Mutation_p.E156K	NM_030968	NP_112230	Q9BXJ1	C1QT1_HUMAN	C1q and tumor necrosis factor related protein 1	58						collagen				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(99;0.0294)|OV - Ovarian serous cystadenocarcinoma(97;0.201)			AGAACAACATGAAAAATACAG	0.592											OREG0024791	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	62					0	0	1	0	0
CCDC40	55036	broad.mit.edu	37	17	78022533	78022533	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:78022533C>T	uc010dht.2	+	5	855	c.828C>T	c.(826-828)TCC>TCT	p.S276S	CCDC40_uc010wub.1_Silent_p.S276S|CCDC40_uc002jxm.3_Silent_p.S59S	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	276					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			ACGAAGGGTCCCAGCTGGTGG	0.592													10	10					0	0	1	0	0
RNF213	57674	broad.mit.edu	37	17	78362453	78362453	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:78362453A>G	uc002jyh.1	+	39	9406	c.9183A>G	c.(9181-9183)GAA>GAG	p.E3061E	uc002jyi.1_Intron|RNF213_uc010dhx.1_5'UTR	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	1145										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GGAACTATGAACATCTCTTTA	0.433													77	153					0	0	1	0	0
BAIAP2	10458	broad.mit.edu	37	17	79080642	79080642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:79080642C>T	uc002jzg.2	+	12	1543	c.1435C>T	c.(1435-1437)CCC>TCC	p.P479S	BAIAP2_uc002jyz.3_Missense_Mutation_p.P479S|BAIAP2_uc002jza.2_Missense_Mutation_p.P479S|BAIAP2_uc002jzc.2_Missense_Mutation_p.P480S|BAIAP2_uc002jzb.2_Missense_Mutation_p.P236S|BAIAP2_uc002jzd.2_Missense_Mutation_p.P479S|BAIAP2_uc002jzf.2_Missense_Mutation_p.P479S|BAIAP2_uc002jze.2_Missense_Mutation_p.P512S|BAIAP2_uc010wuh.1_Missense_Mutation_p.P401S|BAIAP2_uc002jzh.2_Missense_Mutation_p.P480S|BAIAP2_uc010wui.1_Missense_Mutation_p.P342S	NM_017451	NP_059345	Q9UQB8	BAIP2_HUMAN	BAI1-associated protein 2 isoform 2	479					axonogenesis|filopodium assembly|insulin receptor signaling pathway|regulation of actin cytoskeleton organization|response to bacterium	cell junction|cytoskeleton|cytosol|filopodium|nucleus|ruffle	cytoskeletal adaptor activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding				0	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			CCGGGCCTTCCCCGCCCAGAC	0.726													19	18					0	0	1	0	0
C17orf70	80233	broad.mit.edu	37	17	79508409	79508409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr17:79508409C>T	uc002kaq.2	-	8	2495	c.2440G>A	c.(2440-2442)GAG>AAG	p.E814K	C17orf70_uc002kao.1_Missense_Mutation_p.E463K|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Missense_Mutation_p.E663K	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	814					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			GTGGCCTGCTCTGTCACCATC	0.672													17	35					0	0	1	0	0
NDC80	10403	broad.mit.edu	37	18	2578003	2578003	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:2578003C>T	uc002kli.2	+	5	521	c.339C>T	c.(337-339)TCC>TCT	p.S113S		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2	113	Interaction with the N-terminus of CDCA1.|Nuclear localization.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						ATAATGTGTCCATGAAATCTC	0.358													16	39					0	0	1	0	0
LOC727896	727896	broad.mit.edu	37	18	2946444	2946444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:2946444G>A	uc010wyu.1	-	1	178	c.91C>T	c.(91-93)CCA>TCA	p.P31S	LPIN2_uc002klo.2_Intron	NR_026659				Homo sapiens cDNA clone IMAGE:4614712, containing frame-shift errors.												0						TGAAAGACTGGAACGCCTGGG	0.463													5	14					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	7023254	7023254	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:7023254G>A	uc002knm.2	-	19	2704	c.2610C>T	c.(2608-2610)TGC>TGT	p.C870C	LAMA1_uc010wzj.1_Silent_p.C346C	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	870	Laminin EGF-like 8.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGCACTTCAGGCACTCCCCGG	0.612													13	27					0	0	1	0	0
KIAA0802	23255	broad.mit.edu	37	18	8720464	8720464	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:8720464C>T	uc002knr.2	+	4	469	c.327C>T	c.(325-327)GCC>GCT	p.A109A	KIAA0802_uc002knq.2_Silent_p.A109A	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	460	Potential.										0						CCAAACAGGCCCTCCAGAATG	0.498													10	28					0	0	1	0	0
MC2R	4158	broad.mit.edu	37	18	13885119	13885119	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:13885119G>A	uc002ksp.1	-	2	576	c.399C>T	c.(397-399)TTC>TTT	p.F133F		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	133	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	GCAGTGCGTGGAAGATGGTGA	0.582													13	40					0	0	1	0	0
ZNF519	162655	broad.mit.edu	37	18	14106164	14106164	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:14106164C>T	uc002kst.1	-	3	528	c.375G>A	c.(373-375)CAG>CAA	p.Q125Q	ZNF519_uc002ksq.1_Intron|ZNF519_uc002ksr.1_Intron|ZNF519_uc010dlm.1_Intron	NM_145287	NP_660330	Q8TB69	ZN519_HUMAN	zinc finger protein 519	125					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGGCTTCTTCTGAAATATTC	0.299													13	34					0	0	1	0	0
ANKRD29	147463	broad.mit.edu	37	18	21218861	21218861	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:21218861G>A	uc002kun.2	-	4	439	c.282C>T	c.(280-282)GTC>GTT	p.V94V	ANKRD29_uc002kuo.2_Silent_p.V94V	NM_173505	NP_775776	Q8N6D5	ANR29_HUMAN	ankyrin repeat domain 29	94	ANK 3.									ovary(3)|breast(1)	4	all_cancers(21;5.07e-05)|all_epithelial(16;2.49e-07)|Lung NSC(20;0.00211)|all_lung(20;0.00676)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GAAATCTCACGACATCATTAT	0.413													21	45					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21330960	21330960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:21330960G>A	uc002kuq.2	+	5	849	c.763G>A	c.(763-765)GCA>ACA	p.A255T	LAMA3_uc010dlv.1_Missense_Mutation_p.A255T|LAMA3_uc002kur.2_Missense_Mutation_p.A255T	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	255	Laminin N-terminal.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTTTACCAAGGCAACAAACAT	0.473													32	54					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21364004	21364004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:21364004G>A	uc002kuq.2	+	12	1572	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	LAMA3_uc010dlv.1_Missense_Mutation_p.E496K|LAMA3_uc002kur.2_Missense_Mutation_p.E496K	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	496	Domain V.|Laminin EGF-like 4.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGTAATCTGGAAGGTGTTCT	0.517													39	117					0	0	1	0	0
DSC3	1825	broad.mit.edu	37	18	28604315	28604315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:28604315C>T	uc002kwj.3	-	6	930	c.775G>A	c.(775-777)GGT>AGT	p.G259S	DSC3_uc002kwi.3_Missense_Mutation_p.G259S	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	259	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			GCAGACTTACCAGGTCTACTA	0.368													4	24					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28742522	28742522	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:28742522G>A	uc002kwn.2	-	1	298	c.36C>T	c.(34-36)TTC>TTT	p.F12F	DSC1_uc002kwm.2_Silent_p.F12F	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	12					homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			GCTGCTTACAGAAGATGCTCC	0.542													14	38					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28914104	28914104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:28914104G>A	uc002kwp.2	+	8	1156	c.944G>A	c.(943-945)GGA>GAA	p.G315E		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	315	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GGAAATGAAGGAAATTGGTTT	0.299													20	52					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28923508	28923508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:28923508C>T	uc002kwp.2	+	12	1995	c.1783C>T	c.(1783-1785)CAT>TAT	p.H595Y	DSG1_uc010xbp.1_5'Flank	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	595	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TGGAGCAATTCATTCATGGGC	0.473													30	68					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28934464	28934464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:28934464C>T	uc002kwp.2	+	15	2517	c.2305C>T	c.(2305-2307)CCA>TCA	p.P769S	DSG1_uc010xbp.1_Missense_Mutation_p.P128S	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	769	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			AGAATCATATCCAGACCTTGA	0.478													33	83					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28968435	28968435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:28968435G>A	uc002kwq.2	+	4	457	c.322G>A	c.(322-324)GAA>AAA	p.E108K	DSG4_uc002kwr.2_Missense_Mutation_p.E108K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	108	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCGCACTGGGGAAATTAACAT	0.398													14	30					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29038546	29038546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:29038546G>A	uc002kws.2	+	4	464	c.355G>A	c.(355-357)GAA>AAA	p.E119K		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	119	Extracellular (Potential).|Cadherin 1.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CGACCGGGAGGAAACTCCAAG	0.438													9	25					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29055931	29055931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:29055931G>A	uc002kws.2	+	16	2817	c.2708G>A	c.(2707-2709)GGA>GAA	p.G903E	DSG3_uc002kwt.2_Missense_Mutation_p.G185E	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	903	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACTTTGTCAGGAAGTCAAGGA	0.502													23	61					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30254720	30254720	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:30254720T>A	uc002kxm.1	-	9	2175	c.1787A>T	c.(1786-1788)AAA>ATA	p.K596I	KLHL14_uc010dmd.1_Missense_Mutation_p.K145I	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	596	Kelch 6.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						CCAGGTTCCTTTCTCTGGACA	0.468													56	132					0	0	1	0	0
C18orf34	374864	broad.mit.edu	37	18	30950043	30950043	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:30950043C>T	uc002kxn.2	-	5	461	c.319G>A	c.(319-321)GAG>AAG	p.E107K	C18orf34_uc010xbr.1_Missense_Mutation_p.E107K|C18orf34_uc010dmf.1_Missense_Mutation_p.E107K|C18orf34_uc002kxo.2_Missense_Mutation_p.E107K|C18orf34_uc002kxp.2_Missense_Mutation_p.E107K	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	107										ovary(1)	1						ATTTTGGACTCCACATCTTGG	0.383													15	46					0	0	1	0	0
RIT2	6014	broad.mit.edu	37	18	40503584	40503584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:40503584G>A	uc002lav.2	-	4	552	c.379C>T	c.(379-381)CCC>TCC	p.P127S	RIT2_uc010dnf.2_Missense_Mutation_p.P127S	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	127					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						AGCACCAGGGGAATTTCATAG	0.478													67	159					0	0	1	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44260436	44260436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:44260436G>A	uc002lcj.1	-	7	1268	c.700C>T	c.(700-702)CGC>TGC	p.R234C	ST8SIA5_uc002lci.1_Missense_Mutation_p.R81C|ST8SIA5_uc010xcy.1_Missense_Mutation_p.R270C|ST8SIA5_uc010xcz.1_Missense_Mutation_p.R203C	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	234	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						TGCAGCACGCGATAGAACGGC	0.637													5	3					0	0	1	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555292	44555292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:44555292C>T	uc010xdb.1	-	1	1158	c.922G>A	c.(922-924)GAA>AAA	p.E308K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	308	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						AAAGCAGCTTCCTCCTGGAGC	0.637													17	925					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45567061	45567061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:45567061C>T	uc002lda.2	-	1	434	c.418G>A	c.(418-420)GAG>AAG	p.E140K	ZBTB7C_uc002ldb.2_Missense_Mutation_p.E140K|ZBTB7C_uc010dnu.2_Missense_Mutation_p.E149K|ZBTB7C_uc010dnv.2_Missense_Mutation_p.E162K|ZBTB7C_uc010dnw.2_Missense_Mutation_p.E140K|ZBTB7C_uc010dnx.1_Missense_Mutation_p.E140K|ZBTB7C_uc010dny.1_Missense_Mutation_p.E140K|ZBTB7C_uc010dnz.1_Missense_Mutation_p.E162K|ZBTB7C_uc010dob.1_Missense_Mutation_p.E140K|ZBTB7C_uc010doc.1_Missense_Mutation_p.E149K|ZBTB7C_uc010dod.1_Missense_Mutation_p.E162K|ZBTB7C_uc010doe.1_Missense_Mutation_p.E140K|ZBTB7C_uc010dof.1_Missense_Mutation_p.E140K|ZBTB7C_uc010dog.1_Missense_Mutation_p.E140K|ZBTB7C_uc010doh.1_Missense_Mutation_p.E149K|ZBTB7C_uc010doi.1_Missense_Mutation_p.E140K|ZBTB7C_uc010doj.1_Missense_Mutation_p.E149K|ZBTB7C_uc010dok.1_Missense_Mutation_p.E189K|ZBTB7C_uc010dol.1_Missense_Mutation_p.E149K|ZBTB7C_uc010doa.1_Missense_Mutation_p.E162K|ZBTB7C_uc010don.1_Missense_Mutation_p.E148K|ZBTB7C_uc010doo.1_Missense_Mutation_p.E140K|ZBTB7C_uc010dop.1_Missense_Mutation_p.E140K|ZBTB7C_uc010doq.1_Missense_Mutation_p.E149K|ZBTB7C_uc010dor.1_Missense_Mutation_p.E162K|ZBTB7C_uc010dos.1_Missense_Mutation_p.E140K|ZBTB7C_uc010dot.1_Missense_Mutation_p.E140K|ZBTB7C_uc010dou.1_Missense_Mutation_p.E149K|ZBTB7C_uc010dom.1_Missense_Mutation_p.E149K	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	140	Glu-rich.|Asp-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						tcatcgtcctccttgtcatcc	0.284													12	22					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47398567	47398567	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:47398567C>T	uc002leb.2	-	27	3861	c.3573G>A	c.(3571-3573)CCG>CCA	p.P1191P	MYO5B_uc002lea.2_Silent_p.P332P	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1191	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GATCTGCATTCGGGTCCAAAT	0.428													117	285					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47563319	47563319	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:47563319T>C	uc002leb.2	-	4	644	c.356A>G	c.(355-357)TAT>TGT	p.Y119C	MYO5B_uc002lec.1_Missense_Mutation_p.Y118C	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	119	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		ATCTTGTCCATAGATTGGCAA	0.473													16	27					0	0	1	0	0
MAPK4	5596	broad.mit.edu	37	18	48190513	48190513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:48190513C>T	uc002lev.2	+	2	1185	c.185C>T	c.(184-186)GCG>GTG	p.A62V	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Missense_Mutation_p.A62V	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	62	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		ATGAAGCACGCGCTCCGAGAG	0.612													19	46					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50278691	50278691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:50278691C>T	uc002lfe.1	+	2	946	c.359C>T	c.(358-360)TCT>TTT	p.S120F	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	120	Extracellular (Potential).|Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGTGAGGCATCTTTAGGAGAT	0.358													30	80					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50432427	50432427	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:50432427C>T	uc002lfe.1	+	3	1013	c.426C>T	c.(424-426)TTC>TTT	p.F142F	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	142	Extracellular (Potential).|Ig-like C2-type 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CACTGAGGTTCCTTTCACAGA	0.388													24	33					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50985602	50985602	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:50985602G>A	uc002lfe.1	+	24	3980	c.3393G>A	c.(3391-3393)AAG>AAA	p.K1131K	DCC_uc010dpf.1_Silent_p.K766K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1131	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGTTCCATAGGAAACGGGCCA	0.443													14	32					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50985695	50985695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:50985695G>A	uc002lfe.1	+	24	4073	c.3486G>A	c.(3484-3486)ATG>ATA	p.M1162I	DCC_uc010dpf.1_Missense_Mutation_p.M797I	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1162	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AAATGGAGATGAAAAATATTG	0.522													33	83					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	51053115	51053115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:51053115G>A	uc002lfe.1	+	28	4827	c.4240G>A	c.(4240-4242)GAG>AAG	p.E1414K	DCC_uc010dpf.1_Missense_Mutation_p.E1047K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1414	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CAAACCAACAGAGGATTCAGC	0.483													14	51					0	0	1	0	0
CCDC68	80323	broad.mit.edu	37	18	52605268	52605268	+	Missense_Mutation	SNP	C	T	T	rs4294894		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:52605268C>T	uc002lfs.2	-	5	437	c.265G>A	c.(265-267)GAT>AAT	p.D89N	CCDC68_uc002lft.2_Missense_Mutation_p.D89N	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	89										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		ATAAGCAAATCCAAACTGCAA	0.353													5	20					0	0	1	0	0
NEDD4L	23327	broad.mit.edu	37	18	55992244	55992244	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:55992244T>A	uc002lgy.2	+	9	804	c.530T>A	c.(529-531)GTT>GAT	p.V177D	NEDD4L_uc002lgz.2_Missense_Mutation_p.V177D|NEDD4L_uc002lgx.2_Missense_Mutation_p.V177D|NEDD4L_uc010xee.1_Missense_Mutation_p.V56D|NEDD4L_uc002lhc.2_Missense_Mutation_p.V169D|NEDD4L_uc002lhd.2_Missense_Mutation_p.V56D|NEDD4L_uc002lhb.2_Missense_Mutation_p.V56D|NEDD4L_uc002lhe.2_Missense_Mutation_p.V169D|NEDD4L_uc002lhf.2_Missense_Mutation_p.V56D|NEDD4L_uc002lhg.2_Missense_Mutation_p.V56D|NEDD4L_uc002lhh.2_Missense_Mutation_p.V56D|NEDD4L_uc010dpm.1_Missense_Mutation_p.V28D	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	177					cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						TGGGAAGTTGTTGACTCAAAT	0.507													67	146					0	0	1	0	0
MALT1	10892	broad.mit.edu	37	18	56367809	56367809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:56367809C>T	uc002lhm.1	+	4	893	c.635C>T	c.(634-636)CCA>CTA	p.P212L	MALT1_uc002lhn.1_Missense_Mutation_p.P212L	NM_006785	NP_006776	Q9UDY8	MALT1_HUMAN	mucosa associated lymphoid tissue lymphoma	212	Ig-like C2-type 2.				activation of NF-kappaB-inducing kinase activity|anti-apoptosis|nuclear export|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of T cell cytokine production|protein oligomerization|proteolysis|T cell receptor signaling pathway	CBM complex|cytosol|nucleus|perinuclear region of cytoplasm	cysteine-type endopeptidase activity|protein self-association|signal transducer activity|ubiquitin-protein ligase activity			ovary(2)|lung(1)|central_nervous_system(1)	4						TGCGACATCCCAGAGAGCTTC	0.373			T	BIRC3	MALT								8	22					0	0	1	0	0
CPLX4	339302	broad.mit.edu	37	18	56985621	56985621	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:56985621T>A	uc002lhy.2	-	1	261	c.74A>T	c.(73-75)AAT>ATT	p.N25I		NM_181654	NP_857637	Q7Z7G2	CPLX4_HUMAN	complexin 4 precursor	25					exocytosis|neurotransmitter transport	cell junction|synapse	syntaxin binding			ovary(1)	1		Colorectal(73;0.175)				TTCTTCTTTATTTTCTTCAGA	0.398													12	56					0	0	1	0	0
CCBE1	147372	broad.mit.edu	37	18	57136752	57136752	+	Missense_Mutation	SNP	C	T	T	rs115982879	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:57136752C>T	uc002lib.2	-	4	423	c.353G>A	c.(352-354)CGA>CAA	p.R118Q		NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	118					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				CCGGTCATATCGGTATCCCGG	0.512													54	99					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59157792	59157792	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:59157792G>A	uc010dps.1	+	1	18	c.6G>A	c.(4-6)TGG>TGA	p.W2*	CDH20_uc002lif.2_5'UTR	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	2					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				ATCCCATGTGGACTTCTGGTA	0.423													27	65					0	0	1	0	0
SERPINB11	89778	broad.mit.edu	37	18	61390289	61390289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:61390289G>A	uc002ljk.3	+	9	897	c.835G>A	c.(835-837)GAA>AAA	p.E279K	SERPINB11_uc010xes.1_Missense_Mutation_p.E104K|SERPINB11_uc010dqd.2_Missense_Mutation_p.E165K|SERPINB11_uc002ljj.3_Missense_Mutation_p.E165K|SERPINB11_uc010dqe.2_Missense_Mutation_p.E78K|SERPINB11_uc010dqf.2_Missense_Mutation_p.E77K	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	279					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				TAACATGATGGAAAGAGAAGT	0.418													4	15					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63430284	63430284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:63430284G>A	uc002ljz.2	+	2	531	c.206G>A	c.(205-207)GGA>GAA	p.G69E	CDH7_uc002lka.2_Missense_Mutation_p.G69E|CDH7_uc002lkb.2_Missense_Mutation_p.G69E	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	69	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CTCTATGTAGGAAAGGTAGGG	0.408													4	31					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63547909	63547909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:63547909G>A	uc002ljz.2	+	12	2462	c.2137G>A	c.(2137-2139)GAA>AAA	p.E713K	CDH7_uc002lkb.2_Missense_Mutation_p.E713K	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	713	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				ATTTATTTGGGAAAGATTAAA	0.438													23	56					0	0	1	0	0
CCDC102B	79839	broad.mit.edu	37	18	66564501	66564501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:66564501G>A	uc002lkk.2	+	8	1322	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	CCDC102B_uc002lki.2_Missense_Mutation_p.E367K|CCDC102B_uc002lkj.1_Missense_Mutation_p.E367K	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	367	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				GGACAAGAGGGAAATACTTGA	0.403													15	62					0	0	1	0	0
CYB5A	1528	broad.mit.edu	37	18	71930586	71930586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:71930586G>A	uc002lli.2	-	2	367	c.256C>T	c.(256-258)CCA>TCA	p.P86S	CYB5A_uc002llh.2_Missense_Mutation_p.P86S	NM_148923	NP_683725	P00167	CYB5_HUMAN	cytochrome b-5 isoform 1	86					electron transport chain|water-soluble vitamin metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane	aldo-keto reductase (NADP) activity|cytochrome-c oxidase activity|enzyme binding|heme binding				0		Esophageal squamous(42;0.0749)|Prostate(75;0.157)|Melanoma(33;0.211)			Methoxyflurane(DB01028)	GTACTTACTGGATGGAGCTCC	0.438													19	49					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72347218	72347218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr18:72347218C>T	uc002llw.2	+	1	4300	c.4243C>T	c.(4243-4245)CGC>TGC	p.R1415C	ZNF407_uc010xfc.1_Missense_Mutation_p.R1415C|ZNF407_uc010dqu.1_Missense_Mutation_p.R1415C|ZNF407_uc002llu.2_Missense_Mutation_p.R1414C	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1415				R -> C (in Ref. 2; BAA91077).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		TACACGAATTCGCTGTGATGA	0.443													20	29					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2878084	2878084	+	Silent	SNP	G	A	A	rs45599940	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:2878084G>A	uc002lwp.1	+	4	1215	c.1128G>A	c.(1126-1128)GGG>GGA	p.G376G	ZNF556_uc002lwq.2_Silent_p.G375G	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	376	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAACGTGTGGGAAAACGTATG	0.502													11	36					0	0	1	0	0
EBI3	10148	broad.mit.edu	37	19	4234773	4234773	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:4234773G>A	uc002lzu.2	+	4	497	c.489G>A	c.(487-489)CTG>CTA	p.L163L		NM_005755	NP_005746	Q14213	IL27B_HUMAN	Epstein-Barr virus induced 3 precursor	163	Fibronectin type-III 2.				humoral immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of interferon-gamma biosynthetic process|T-helper 1 type immune response	extracellular space|plasma membrane	cytokine activity|cytokine receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0336)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTTCTCACTGAAGTACTGGA	0.642													53	137					0	0	1	0	0
FEM1A	55527	broad.mit.edu	37	19	4793243	4793243	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:4793243C>T	uc002mbf.2	+	1	1516	c.1377C>T	c.(1375-1377)ATC>ATT	p.I459I	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	459					regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		GCACCCAGATCGGCTTTGCAG	0.647													84	158					0	0	1	0	0
SAFB2	9667	broad.mit.edu	37	19	5616247	5616247	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:5616247A>T	uc002mcd.2	-	4	651	c.439T>A	c.(439-441)TTT>ATT	p.F147I	SAFB2_uc010xio.1_Missense_Mutation_p.F147I|SAFB2_uc010xip.1_RNA	NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	147					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		TCCTCCCCAAAATCTGGAGCA	0.532													11	35					0	0	1	0	0
DENND1C	79958	broad.mit.edu	37	19	6467759	6467759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:6467759G>A	uc002mfe.2	-	23	2254	c.2162C>T	c.(2161-2163)CCC>CTC	p.P721L	DENND1C_uc002mfb.2_Missense_Mutation_p.P271L|DENND1C_uc002mfc.2_Missense_Mutation_p.P271L|DENND1C_uc002mfd.2_Missense_Mutation_p.P271L|DENND1C_uc010xje.1_Missense_Mutation_p.P677L	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	721						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						GGGCTTTGTGGGGGCCAGAAT	0.602													7	17					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6684423	6684423	+	Missense_Mutation	SNP	G	T	T	rs139100972		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:6684423G>T	uc002mfm.2	-	33	4210	c.4148C>A	c.(4147-4149)ACT>AAT	p.T1383N	C3_uc002mfl.2_Missense_Mutation_p.T119N	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1383					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		AAGGATCATAGTGTTCTTGGC	0.453													36	101					1.57019e-19	1.60543e-19	1	1	0
C3	718	broad.mit.edu	37	19	6707508	6707508	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:6707508G>A	uc002mfm.2	-	16	2078	c.2016C>T	c.(2014-2016)TCC>TCT	p.S672S		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	672					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TGAGCTGCACGGAACGGCGTC	0.662													38	64					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6937282	6937282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:6937282C>T	uc002mfw.2	+	19	2448	c.2410C>T	c.(2410-2412)CTC>TTC	p.L804F	EMR1_uc010dvc.2_Missense_Mutation_p.L739F|EMR1_uc010dvb.2_Missense_Mutation_p.L785F|EMR1_uc010xji.1_Missense_Mutation_p.L663F|EMR1_uc010xjj.1_Missense_Mutation_p.L627F	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	804	Helical; Name=6; (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CTTTGCCCAGCTCTTCATCCT	0.547													36	70					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7117304	7117304	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:7117304G>A	uc002mgd.1	-	22	4021	c.3912C>T	c.(3910-3912)TTC>TTT	p.F1304F	INSR_uc002mge.1_Silent_p.F1292F	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	1304	Cytoplasmic (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCTCGCTGTGGAAGAACGACA	0.567													122	300					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8175829	8175829	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:8175829C>T	uc002mjf.2	-	33	4254	c.4233G>A	c.(4231-4233)GGG>GGA	p.G1411G		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1411	EGF-like 22; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CACAGAGGTTCCCTTGCGCAC	0.632													32	61					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8995693	8995693	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:8995693C>T	uc002mkp.2	-	63	41499	c.41295G>A	c.(41293-41295)GGG>GGA	p.G13765G	MUC16_uc010dwi.2_Intron|MUC16_uc010dwj.2_Silent_p.G582G|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13767	Extracellular (Potential).|ANK 1.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGTGGGGGTCCCAGGAGCTG	0.488													6	16					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9005631	9005631	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9005631G>A	uc002mkp.2	-	46	39979	c.39775C>T	c.(39775-39777)CTG>TTG	p.L13259L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.L76L|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13261	SEA 8.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCTGGCTCAGCTCCCAGTAT	0.562													40	112					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9066121	9066121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9066121G>A	uc002mkp.2	-	3	21529	c.21325C>T	c.(21325-21327)CCT>TCT	p.P7109S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7111	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAATGGGAGGAGGTGAGGTT	0.522													14	44					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075211	9075211	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9075211G>A	uc002mkp.2	-	3	12439	c.12235C>T	c.(12235-12237)CTG>TTG	p.L4079L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4081	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGTTAGACAGCCTGGTGATG	0.493													23	76					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9076139	9076139	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9076139G>A	uc002mkp.2	-	3	11511	c.11307C>T	c.(11305-11307)ATC>ATT	p.I3769I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3770	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGCTGGGCTGATCATGGTTT	0.527													46	68					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9083269	9083269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9083269G>A	uc002mkp.2	-	1	8750	c.8546C>T	c.(8545-8547)CCT>CTT	p.P2849L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2849	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGCTTCACAGGTATCCCTTT	0.537													11	19					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9090293	9090293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9090293C>T	uc002mkp.2	-	1	1726	c.1522G>A	c.(1522-1524)GCA>ACA	p.A508T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	508	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGTGGTTGCCCTCAGGATG	0.557													20	58					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9325379	9325379	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9325379G>A	uc002mla.1	-	1	135	c.135C>T	c.(133-135)ATC>ATT	p.I45I		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CGGCCAGAATGATGAGCAGGT	0.552													26	95					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9580312	9580312	+	Missense_Mutation	SNP	G	A	A	rs149939433	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9580312G>A	uc002mlp.1	-	8	733	c.523C>T	c.(523-525)CTC>TTC	p.L175F	ZNF560_uc010dwr.1_Missense_Mutation_p.L69F	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	175	KRAB 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TCACCTTGGAGAACTCTTGGC	0.448													14	45					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9584930	9584930	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9584930C>T	uc002mlp.1	-	4	312	c.102G>A	c.(100-102)CAG>CAA	p.Q34Q	ZNF560_uc010dwr.1_5'UTR	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	34	KRAB 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						ATAAGTTTCTCTGAACTGGGT	0.433													23	53					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	9800950	9800950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:9800950G>A	uc010xkx.1	-	3	1540	c.917C>T	c.(916-918)ACT>ATT	p.T306I						RecName: Full=Zinc finger protein 562;																		TCTGGTATGAGTTTGCAGGTG	0.403													14	37					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10080595	10080595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:10080595G>A	uc002mmq.1	-	55	4026	c.3940C>T	c.(3940-3942)CCT>TCT	p.P1314S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1314	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TGGCCTGAAGGACCCTTGGAA	0.612													29	78					0	0	1	0	0
TYK2	7297	broad.mit.edu	37	19	10463122	10463122	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:10463122C>A	uc002moc.3	-	23	3684	c.3306G>T	c.(3304-3306)CAG>CAT	p.Q1102H	TYK2_uc010dxe.2_Missense_Mutation_p.Q917H	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	1102	Protein kinase 2.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			TGGGGGGGCTCTGGCTGGAGT	0.512													41	97					5.85753e-14	5.9744e-14	1	1	0
PDE4A	5141	broad.mit.edu	37	19	10578289	10578289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:10578289C>T	uc002moj.2	+	15	2761	c.2653C>T	c.(2653-2655)CCT>TCT	p.P885S	PDE4A_uc002mok.2_Missense_Mutation_p.P859S|PDE4A_uc002mol.2_Missense_Mutation_p.P824S|PDE4A_uc002mom.2_Missense_Mutation_p.P646S|PDE4A_uc002mon.2_Missense_Mutation_p.P340S|PDE4A_uc002moo.2_3'UTR	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	885					signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	AGGTGGAGACCCTACCTGATC	0.652													13	52					0	0	1	0	0
DNM2	1785	broad.mit.edu	37	19	10909219	10909219	+	Missense_Mutation	SNP	C	T	T	rs121909091		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:10909219C>T	uc002mps.1	+	11	1557	c.1393C>T	c.(1393-1395)CGG>TGG	p.R465W	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Missense_Mutation_p.R465W|DNM2_uc002mpv.1_Missense_Mutation_p.R465W|DNM2_uc002mpu.1_Missense_Mutation_p.R465W|DNM2_uc010dxl.1_Missense_Mutation_p.R465W|DNM2_uc002mpw.2_Missense_Mutation_p.R198W	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	465			R -> W (in ADCNM; reduced association with the centrosome; COS7 cells show a reduced uptake of transferrin and low- density lipoprotein complex).		G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			CACTTACATCCGGGAACGGGA	0.438													17	42					0	0	1	0	0
SMARCA4	6597	broad.mit.edu	37	19	11123651	11123651	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:11123651C>T	uc002mqf.3	+	16	2585	c.2301C>T	c.(2299-2301)TCC>TCT	p.S767S	SMARCA4_uc010dxp.2_Silent_p.S767S|SMARCA4_uc010dxo.2_Silent_p.S767S|SMARCA4_uc002mqg.1_Silent_p.S767S|SMARCA4_uc010dxq.2_Silent_p.S767S|SMARCA4_uc010dxr.2_Silent_p.S767S|SMARCA4_uc002mqj.3_Silent_p.S767S|SMARCA4_uc010dxs.2_Silent_p.S767S|SMARCA4_uc010dxt.1_5'UTR	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	767	Helicase ATP-binding.				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.S767F(1)|p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GGCTGGTGTCCCTGTACAACA	0.592			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				20	38					0	0	1	0	0
LPPR2	64748	broad.mit.edu	37	19	11474442	11474442	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:11474442C>T	uc002mre.1	+	8	1231	c.894C>T	c.(892-894)CTC>CTT	p.L298L	LPPR2_uc002mrf.1_Silent_p.L273L|LPPR2_uc010dxy.1_Silent_p.L105L	NM_022737	NP_073574	Q96GM1	LPPR2_HUMAN	lipid phosphate phosphatase-related protein type	298						integral to membrane	phosphatidate phosphatase activity			large_intestine(1)	1						GCCGAAGGCTCTCTCCCTGGG	0.632													16	51					0	0	1	0	0
ZNF563	147837	broad.mit.edu	37	19	12430286	12430286	+	Nonsense_Mutation	SNP	G	A	A	rs150045277		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:12430286G>A	uc002mtp.2	-	4	791	c.553C>T	c.(553-555)CGA>TGA	p.R185*	ZNF563_uc002mtq.2_Nonsense_Mutation_p.R185*	NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	185	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATGTGTCTTCGAAGGTTTCTA	0.418													38	100					0	0	1	0	0
ZNF490	57474	broad.mit.edu	37	19	12692534	12692534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:12692534G>A	uc002mtz.2	-	5	484	c.355C>T	c.(355-357)CCT>TCT	p.P119S		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	119	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCAACCATAGGACTTCTGTAA	0.323													22	50					0	0	1	0	0
ZNF791	163049	broad.mit.edu	37	19	12738595	12738595	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:12738595C>T	uc002mua.2	+	4	414	c.252C>T	c.(250-252)TTC>TTT	p.F84F	ZNF791_uc010xml.1_Silent_p.F52F|ZNF791_uc010dyu.1_5'UTR|ZNF791_uc010xmm.1_5'UTR	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	84	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CAGAAAACTTCAGTCCCAATC	0.428													54	95					0	0	1	0	0
FBXW9	84261	broad.mit.edu	37	19	12799959	12799959	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:12799959G>A	uc010xmp.1	-	8		c.1255C>T			uc002mul.1_Missense_Mutation_p.G73R|FBXW9_uc002mum.1_3'UTR|FBXW9_uc002mun.1_3'UTR|FBXW9_uc010dyx.2_3'UTR			Q5XUX1	FBXW9_HUMAN	Homo sapiens cDNA FLJ41042 fis, clone NT2RI2005166, highly similar to F-box/WD repeat protein 9.								protein binding			ovary(1)	1						CCAACATTGGGGATGGTCCCC	0.667													5	19					0	0	1	0	0
RTBDN	83546	broad.mit.edu	37	19	12936681	12936681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:12936681C>T	uc002mvi.2	-	6	659	c.529G>A	c.(529-531)GGA>AGA	p.G177R	RTBDN_uc002mvh.1_3'UTR|RTBDN_uc002mvj.2_Missense_Mutation_p.G209R	NM_001080997	NP_001074466	Q9BSG5	RTBDN_HUMAN	retbindin isoform 1	177						extracellular region					0						TGACGGGCTCCAGGAGCAGCC	0.662											OREG0025275	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	25					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15289974	15289974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:15289974G>A	uc002nan.2	-	22	3656	c.3580C>T	c.(3580-3582)CCC>TCC	p.P1194S	NOTCH3_uc002nao.1_Missense_Mutation_p.P1142S	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1194	Extracellular (Potential).|EGF-like 30; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			TATCCTGGGGGACAGGTGCAG	0.662													8	17					0	0	1	0	0
AKAP8	10270	broad.mit.edu	37	19	15483971	15483971	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:15483971A>G	uc002nav.2	-	5	613	c.552T>C	c.(550-552)GAT>GAC	p.D184D	AKAP8_uc010dzy.2_5'UTR|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_5'UTR	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	184					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						GCATGAAGCCATCAAGGGAGC	0.682													17	45					0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15587070	15587070	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:15587070G>A	uc002nbf.3	-	2	544	c.411C>T	c.(409-411)GTC>GTT	p.V137V	PGLYRP2_uc002nbg.3_Silent_p.V137V	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	137					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						GCAAATTTATGACCCTGCGCC	0.602													32	58					0	0	1	0	0
CYP4F22	126410	broad.mit.edu	37	19	15651427	15651427	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:15651427C>T	uc002nbh.3	+	8	1005	c.838C>T	c.(838-840)CAG>TAG	p.Q280*		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	280						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						TGAAGTCATCCAGGAACGGCG	0.612													25	71					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15806853	15806853	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:15806853T>A	uc002nbl.2	+	10	1284	c.1223T>A	c.(1222-1224)CTC>CAC	p.L408H		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GACATTGTTCTCCCAGATGGC	0.612													34	57					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15807289	15807289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:15807289C>T	uc002nbl.2	+	12	1425	c.1364C>T	c.(1363-1365)CCT>CTT	p.P455L		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GGGAGGTCACCTCTGGCTTTT	0.557													48	103					0	0	1	0	0
OR10H5	284433	broad.mit.edu	37	19	15905325	15905325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:15905325G>A	uc010xos.1	+	1	467	c.467G>A	c.(466-468)GGG>GAG	p.G156E		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTGGTCATGGGGATGGTGGTG	0.612													24	52					0	0	1	0	0
CYP4F2	8529	broad.mit.edu	37	19	16003245	16003245	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:16003245C>T	uc002nbs.1	-	5	449	c.399G>A	c.(397-399)GGG>GGA	p.G133G	CYP4F2_uc010xot.1_5'UTR|CYP4F2_uc010xou.1_5'UTR	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	133					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GGAGCCCATCCCCTAGCAGGG	0.592													34	61					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16024623	16024623	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:16024623G>A	uc002nbu.2	-	13	1530	c.1494C>T	c.(1492-1494)CCC>CCT	p.P498P	CYP4F11_uc010eab.1_3'UTR|CYP4F11_uc002nbt.2_Silent_p.P498P	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	498					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GTTTCCTGCGGGGTTCAGTGT	0.637													11	15					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17038878	17038878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:17038878G>A	uc002nfb.2	-	25	3484	c.3452C>T	c.(3451-3453)ACC>ATC	p.T1151I		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1104						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GACCCCCAGGGTGAAGGCCTC	0.637													39	48					0	0	1	0	0
ANKLE1	126549	broad.mit.edu	37	19	17394615	17394615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:17394615G>A	uc002nga.2	+	5	1318	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Missense_Mutation_p.E370K|ANKLE1_uc010xpn.1_Missense_Mutation_p.E402K|ANKLE1_uc002nfy.2_Missense_Mutation_p.E337K|ANKLE1_uc002nfz.2_Missense_Mutation_p.E54K	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	348						nuclear envelope					0						AGGTGGCAGGGAACCTGTCGG	0.582													12	39					0	0	1	0	0
SLC5A5	6528	broad.mit.edu	37	19	17992853	17992853	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:17992853G>A	uc002nhr.3	+	9	1490	c.1143G>A	c.(1141-1143)AGG>AGA	p.R381R		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	381	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TGGCACCCAGGAAACTCGTGA	0.582													17	45					0	0	1	0	0
ARRDC2	27106	broad.mit.edu	37	19	18119156	18119156	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:18119156T>C	uc002nhv.2	+	1	180	c.37T>C	c.(37-39)TTG>CTG	p.L13L	ARRDC2_uc002nhu.2_Intron	NM_015683	NP_056498	Q8TBH0	ARRD2_HUMAN	arrestin domain containing 2 isoform 1	13										pancreas(1)	1						CTCGGTGCAGTTGGACGGCGC	0.697													11	36					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19745420	19745420	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:19745420G>A	uc002nnd.2	-	18	2097	c.1980C>T	c.(1978-1980)ACC>ACT	p.T660T	GMIP_uc010xrb.1_Silent_p.T634T|GMIP_uc010xrc.1_Silent_p.T631T	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	660	Rho-GAP.				negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						TGGGGCTGGGGGTCCCAGGGT	0.622													54	158					0	0	1	0	0
LOC284441	284441	broad.mit.edu	37	19	20369281	20369281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:20369281G>A	uc002nov.2	+	1	825	c.74G>A	c.(73-75)CGA>CAA	p.R25Q		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						GGCATAGTACGAAATTGGGAT	0.378													35	72					0	0	1	0	0
LOC284441	284441	broad.mit.edu	37	19	20369815	20369815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:20369815G>A	uc002nov.2	+	1	1359	c.608G>A	c.(607-609)AGA>AAA	p.R203K		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						GGGGGAGAGAGATTTGAAACA	0.398													6	15					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22156775	22156775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:22156775G>A	uc002nqp.2	-	4	1210	c.1061C>T	c.(1060-1062)TCA>TTA	p.S354L	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGTAAGGATTGAGAACTTACT	0.403													16	50					0	0	1	0	0
ZNF257	113835	broad.mit.edu	37	19	22270818	22270818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:22270818G>A	uc010ecx.2	+	4	435	c.266G>A	c.(265-267)CGA>CAA	p.R89Q	ZNF257_uc010ecy.2_Missense_Mutation_p.R57Q	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	89					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGCCCAGAGCGAGACATAAAA	0.313													8	37					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22363780	22363780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:22363780G>A	uc002nqs.1	-	3	1057	c.739C>T	c.(739-741)CAT>TAT	p.H247Y		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	247	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TCTCCAGTATGAATTATCTTA	0.368													16	75					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22364370	22364370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:22364370G>A	uc002nqs.1	-	3	467	c.149C>T	c.(148-150)TCC>TTC	p.S50F		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	50					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				AAACTCTTGGGAAAAATGAGA	0.274													8	20					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22939459	22939459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:22939459C>T	uc010xrh.1	-	7	2712	c.2712G>A	c.(2710-2712)ATG>ATA	p.M904I		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTTATGTTTCATAAGGGTCG	0.353													18	29					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940632	22940632	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:22940632C>T	uc010xrh.1	-	5	1806	c.1806G>A	c.(1804-1806)AGG>AGA	p.R602R		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTTATGTTTCCTAAGGGCTG	0.373													20	47					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22941198	22941198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:22941198C>T	uc010xrh.1	-	5	1240	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GGTTTCTCTTCCATATGAATT	0.348													16	27					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22941365	22941365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:22941365C>T	uc010xrh.1	-	5	1073	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GGGTTGCTTTCCAGTATGAAT	0.368													13	33					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	23159561	23159561	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:23159561C>T	uc002nqy.1	-	3		c.589G>A			uc002nqz.1_Missense_Mutation_p.R129K					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		AGTATAAATTCTTTTATGTTG	0.333													8	21					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30934865	30934865	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:30934865C>T	uc002nsu.1	+	2	534	c.396C>T	c.(394-396)TGC>TGT	p.C132C	ZNF536_uc010edd.1_Silent_p.C132C	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	132	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AGTACCCGTGCCCACTCTGCG	0.622													17	43					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935393	30935393	+	Silent	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:30935393G>T	uc002nsu.1	+	2	1062	c.924G>T	c.(922-924)GCG>GCT	p.A308A	ZNF536_uc010edd.1_Silent_p.A308A	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	308	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GCGACTTCGCGGCTTCGCAGG	0.642													4	123					0.150653	0.151231	1	1	0
ZNF536	9745	broad.mit.edu	37	19	30935979	30935979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:30935979G>A	uc002nsu.1	+	2	1648	c.1510G>A	c.(1510-1512)GAG>AAG	p.E504K	ZNF536_uc010edd.1_Missense_Mutation_p.E504K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	504					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CAGCTGCATCGAGCGGCTGCA	0.652													21	52					0	0	1	0	0
ANKRD27	84079	broad.mit.edu	37	19	33089106	33089106	+	Missense_Mutation	SNP	G	A	A	rs150349860		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:33089106G>A	uc002ntn.1	-	29	3254	c.3098C>T	c.(3097-3099)CCG>CTG	p.P1033L		NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	1033					early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					AGCAGCCTCCGGGCCCTGGGA	0.617													32	54					0	0	1	0	0
CCDC123	84902	broad.mit.edu	37	19	33392208	33392208	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:33392208A>G	uc002nty.2	-	15	1765	c.1676T>C	c.(1675-1677)TTG>TCG	p.L559S	CCDC123_uc002ntx.2_Missense_Mutation_p.L312S|CCDC123_uc010edg.2_RNA	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123	559	Potential.					centrosome|spindle pole					0	Esophageal squamous(110;0.137)					TTGCTCTGTCAAACTGTTCTT	0.418													36	72					0	0	1	0	0
RHPN2	85415	broad.mit.edu	37	19	33493752	33493752	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:33493752G>A	uc002nuf.2	-	8	981	c.915C>T	c.(913-915)TTC>TTT	p.F305F	RHPN2_uc010xro.1_Silent_p.F154F|RHPN2_uc002nue.2_Silent_p.F35F	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	305	BRO1.				signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					TCACCAGCATGAAGAATTCAT	0.547													15	53					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	34583506	34583506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:34583506C>T	uc002nuz.2	-	1	708	c.656G>A	c.(655-657)GGT>GAT	p.G219D						full-length cDNA clone CS0DE007YF24 of Placenta of Homo sapiens (human).																		GAAGCGGATACCCTTTCCTCG	0.453													4	6					0	0	1	0	0
FFAR1	2864	broad.mit.edu	37	19	35842971	35842971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:35842971G>A	uc002nzc.2	+	1	527	c.517G>A	c.(517-519)GCC>ACC	p.A173T		NM_005303	NP_005294	O14842	FFAR1_HUMAN	free fatty acid receptor 1	173	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;4.58e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.67e-19)|all cancers(14;2.01e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)		Icosapent(DB00159)	CTGCCTGGAGGCCTGGGACCC	0.647													14	30					0	0	1	0	0
APLP1	333	broad.mit.edu	37	19	36362174	36362175	+	Missense_Mutation	DNP	GA	TC	TC			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:36362174_36362175GA>TC	uc002oce.2	+	4	598_599	c.460_461GA>TC	c.(460-462)GAA>TCA	p.E154S	APLP1_uc010xsz.1_Missense_Mutation_p.E115S|APLP1_uc002ocf.2_Missense_Mutation_p.E154S|APLP1_uc002ocg.2_Missense_Mutation_p.E57S|APLP1_uc010xta.1_Missense_Mutation_p.E148S	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	154	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCTGGTGCCTGAAGGCTGCCGG	0.609													4	16					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38976641	38976641	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:38976641C>T	uc002oit.2	+	34	5476	c.5346C>T	c.(5344-5346)TTC>TTT	p.F1782F	RYR1_uc002oiu.2_Silent_p.F1782F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1782	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCCCCTGTTTCGTGGCCGCTC	0.682													25	33					0	0	1	0	0
MAP4K1	11184	broad.mit.edu	37	19	39108532	39108533	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:39108532_39108533CC>TT	uc002oix.1	-	1	111_112	c.3_4GG>AA	c.(1-6)ATGGAC>ATAAAC	p.1_2MD>IN	MAP4K1_uc002oiy.1_Missense_Mutation_p.1_2MD>IN|EIF3K_uc010xuh.1_5'Flank|EIF3K_uc002oiz.1_5'Flank|EIF3K_uc010xui.1_5'Flank	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	1_2					activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TCCACGACGTCCATCCCTGGGG	0.653													27	47					0	0	1	0	0
TIMM50	92609	broad.mit.edu	37	19	39977088	39977088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:39977088C>T	uc002olu.1	+	8	1091	c.958C>T	c.(958-960)CGC>TGC	p.R320C	TIMM50_uc002olt.1_RNA|TIMM50_uc002olv.1_Missense_Mutation_p.R19C	NM_001001563	NP_001001563	Q3ZCQ8	TIM50_HUMAN	translocase of inner mitochondrial membrane 50	217	Mitochondrial intermembrane (Potential).|FCP1 homology.				mitochondrial membrane organization|protein transport|release of cytochrome c from mitochondria|transmembrane transport	integral to membrane|mitochondrial inner membrane presequence translocase complex|nuclear speck	interleukin-2 receptor binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|ribonucleoprotein binding|RNA binding			ovary(1)	1	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CATCTCCTACCGCCTATTCCG	0.582													25	71					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40367841	40367841	+	Silent	SNP	T	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:40367841T>G	uc002omp.3	-	29	13127	c.13119A>C	c.(13117-13119)GCA>GCC	p.A4373A		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4373	TIL 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TCGTAAGGGGTGCAGGGGACG	0.627													5	51					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40419615	40419615	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:40419615T>A	uc002omp.3	-	6	3387	c.3379A>T	c.(3379-3381)AGG>TGG	p.R1127W		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1127						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TCTTCACTCCTCCAGGGGTGC	0.493													33	83					0	0	1	0	0
AKT2	208	broad.mit.edu	37	19	40762863	40762863	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:40762863G>A	uc002onf.2	-	3	407	c.145C>T	c.(145-147)CTA>TTA	p.L49L	AKT2_uc010egs.2_Silent_p.L49L|AKT2_uc010egt.2_5'UTR|AKT2_uc010xvj.1_5'UTR|AKT2_uc010egu.1_5'UTR|AKT2_uc010xvk.1_Silent_p.L49L	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	49	PH.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			AAGGGGGGTAGAGTCTGATCA	0.562			A		ovarian|pancreatic 								119	371					0	0	1	0	0
HIPK4	147746	broad.mit.edu	37	19	40886649	40886649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:40886649C>T	uc002onp.2	-	3	1534	c.1249G>A	c.(1249-1251)GAG>AAG	p.E417K		NM_144685	NP_653286	Q8NE63	HIPK4_HUMAN	homeodomain interacting protein kinase 4	417						cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2			Lung(22;4.95e-05)|LUSC - Lung squamous cell carcinoma(20;0.000292)			GGTGCCTTCTCCTCTCGGAAG	0.627													32	71					0	0	1	0	0
HIPK4	147746	broad.mit.edu	37	19	40889927	40889927	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:40889927C>T	uc002onp.2	-	2	870	c.585G>A	c.(583-585)AAG>AAA	p.K195K		NM_144685	NP_653286	Q8NE63	HIPK4_HUMAN	homeodomain interacting protein kinase 4	195	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2			Lung(22;4.95e-05)|LUSC - Lung squamous cell carcinoma(20;0.000292)			ACACGTCCACCTTCTCGCAGA	0.632													21	28					0	0	1	0	0
CEACAM7	1087	broad.mit.edu	37	19	42187889	42187889	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:42187889A>G	uc002ori.1	-	3	535	c.533T>C	c.(532-534)CTG>CCG	p.L178P	CEACAM7_uc010ehx.2_Missense_Mutation_p.L178P|CEACAM7_uc010ehy.1_Intron	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	178	Ig-like C2-type.					anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		TACCCACCACAGGTAGGTTGT	0.507													40	93					0	0	1	0	0
ARHGEF1	9138	broad.mit.edu	37	19	42396720	42396720	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:42396720C>T	uc002orx.2	+	7	523	c.414C>T	c.(412-414)TTC>TTT	p.F138F	ARHGEF1_uc002orw.1_Silent_p.F138F|ARHGEF1_uc002ory.2_Silent_p.F105F|ARHGEF1_uc002orz.2_5'UTR|ARHGEF1_uc002osa.2_Silent_p.F153F|ARHGEF1_uc002osb.2_Silent_p.F120F|ARHGEF1_uc002osc.2_5'Flank	NM_004706	NP_004697	Q92888	ARHG1_HUMAN	Rho guanine nucleotide exchange factor 1 isoform	138	RGSL.				cell proliferation|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(3)|large_intestine(1)	4		Renal(1328;0.000518)|Hepatocellular(1079;0.0046)|Medulloblastoma(540;0.0425)		Epithelial(262;5.89e-46)|GBM - Glioblastoma multiforme(1328;2.49e-12)|STAD - Stomach adenocarcinoma(1328;0.00644)		AGCGGCGGTTCGTGCAGGAGG	0.662													23	32					0	0	1	0	0
PSG3	5671	broad.mit.edu	37	19	43233375	43233375	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:43233375G>A	uc002oue.2	-	5	1275	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.I381I|PSG3_uc010eil.2_Silent_p.I403I	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	381	Ig-like C2-type 3.			Missing (in Ref. 9).	defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TAATCTGGGGGATAAAGAGCT	0.458													80	201					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43430593	43430593	+	Missense_Mutation	SNP	G	A	A	rs111443232		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:43430593G>A	uc002ovl.3	-	5	1087	c.985C>T	c.(985-987)CTC>TTC	p.L329F	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Missense_Mutation_p.L207F	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	329					female pregnancy	extracellular region					0		Prostate(69;0.00682)				TACTCACAGAGGACATTCAGG	0.522													47	97					0	0	1	0	0
PSG2	5670	broad.mit.edu	37	19	43579737	43579737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:43579737C>T	uc002ovr.2	-	3	571	c.478G>A	c.(478-480)GAG>AAG	p.E160K	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.E160K|PSG2_uc010eiq.1_Missense_Mutation_p.E160K|PSG2_uc002ovs.3_Missense_Mutation_p.E160K|PSG2_uc002ovt.3_Missense_Mutation_p.E160K	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	160	Ig-like C2-type 1.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				TCCATGGCCTCCCTGGGGTTT	0.517													62	159					0	0	1	0	0
PSG9	5678	broad.mit.edu	37	19	43762387	43762387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:43762387C>T	uc002owd.3	-	5	1309	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	PSG9_uc002owe.3_Missense_Mutation_p.E311K|PSG9_uc010xwm.1_Missense_Mutation_p.E311K|PSG9_uc002owf.3_Missense_Mutation_p.E218K|PSG9_uc002owg.2_Missense_Mutation_p.E311K|PSG9_uc002owh.2_Missense_Mutation_p.E218K	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	404	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTGGAGATTTCCTTGCCAGTG	0.448													59	162					0	0	1	0	0
ZNF404	342908	broad.mit.edu	37	19	44377351	44377351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:44377351C>T	uc002oxs.3	-	2	1015	c.1006G>A	c.(1006-1008)GGC>AGC	p.G336S		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	339	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				AGGCTTGAGCCCTTACCAAAA	0.398													20	48					0	0	1	0	0
TRAPPC6A	79090	broad.mit.edu	37	19	45668431	45668431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:45668431C>T	uc002paw.2	-	2	125	c.106G>A	c.(106-108)GTC>ATC	p.V36I	TRAPPC6A_uc002pav.2_Missense_Mutation_p.V50I			O75865	TPC6A_HUMAN	SubName: Full=TRAPPC6Adelta29-42; SubName: Full=Trafficking protein particle complex 6A, isoform CRA_a;	36					vesicle-mediated transport	endoplasmic reticulum|Golgi apparatus	guanylate cyclase activity|heme binding				0		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00872)|GBM - Glioblastoma multiforme(486;0.233)		CCCTCCAGGACCGACAGGCTC	0.701													3	1					0	0	1	0	0
EML2	24139	broad.mit.edu	37	19	46119792	46119792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:46119792G>A	uc002pcn.2	-	15	1471	c.1436C>T	c.(1435-1437)TCC>TTC	p.S479F	EML2_uc002pco.2_Intron|EML2_uc002pcp.2_Missense_Mutation_p.S363F|EML2_uc010xxl.1_Missense_Mutation_p.S626F|EML2_uc010xxm.1_Missense_Mutation_p.S680F|EML2_uc010xxn.1_RNA	NM_012155	NP_036287	O95834	EMAL2_HUMAN	echinoderm microtubule associated protein like	479	WD 8.				sensory perception of sound|visual perception	cytoplasm|intracellular membrane-bounded organelle|microtubule|microtubule associated complex	catalytic activity|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00553)|GBM - Glioblastoma multiforme(486;0.131)|Epithelial(262;0.197)		GTTGTCGTGGGAGCCCACGGC	0.706													22	38					0	0	1	0	0
IRF2BP1	26145	broad.mit.edu	37	19	46387736	46387737	+	Silent	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:46387736_46387737GG>AA	uc002pds.1	-	1	1640_1641	c.1296_1297CC>TT	c.(1294-1299)GCCCTG>GCTTTG	p.432_433AL>AL		NM_015649	NP_056464	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein	432_433					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		GAGTGGCCCAGGGCTTCGGCCA	0.728													4	17					0	0	1	0	0
PNMAL2	57469	broad.mit.edu	37	19	46997226	46997226	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:46997226G>A	uc002pes.2	-	1	1944	c.1497C>T	c.(1495-1497)TCC>TCT	p.S499S	uc002peu.1_5'Flank	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	499										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		ACCCCTCGTTGGACCCCATGT	0.627													36	75					0	0	1	0	0
PTGIR	5739	broad.mit.edu	37	19	47124880	47124880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:47124880C>T	uc002pex.2	-	3	931	c.818G>A	c.(817-819)GGG>GAG	p.G273E		NM_000960	NP_000951	P43119	PI2R_HUMAN	prostaglandin I2 (prostacyclin) receptor (IP)	273	Extracellular (Potential).				cell-cell signaling|G-protein signaling, coupled to cyclic nucleotide second messenger|platelet activation	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000327)|all cancers(93;0.000641)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0331)	Dinoprost Tromethamine(DB01160)|Dinoprostone(DB00917)|Epoprostenol(DB01240)|Iloprost(DB01088)|Misoprostol(DB00929)	AAGGAGGTCCCCCATCTCACT	0.627													23	39					0	0	1	0	0
DHX34	9704	broad.mit.edu	37	19	47870377	47870377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:47870377C>T	uc010xyn.1	+	7	2074	c.1733C>T	c.(1732-1734)TCC>TTC	p.S578F	DHX34_uc010elc.1_Missense_Mutation_p.S493F	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	578						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		CCCATTGGGTCCCTGCTAGCC	0.647													5	17					0	0	1	0	0
ELSPBP1	64100	broad.mit.edu	37	19	48511977	48511977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:48511977C>T	uc002pht.2	+	2	208	c.53C>T	c.(52-54)TCC>TTC	p.S18F		NM_022142	NP_071425	Q96BH3	ESPB1_HUMAN	epididymal sperm binding protein 1 precursor	18					single fertilization	extracellular region					0		all_cancers(25;8.7e-09)|all_lung(116;1.15e-06)|all_epithelial(76;1.17e-06)|Lung NSC(112;2.56e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000253)|all cancers(93;0.00129)|Epithelial(262;0.0314)|GBM - Glioblastoma multiforme(486;0.0606)		CTTCTCTATTCCTATGAGTCA	0.453													5	11					0	0	1	0	0
LIG1	3978	broad.mit.edu	37	19	48660362	48660362	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:48660362G>A	uc002pia.1	-	5	399	c.279C>T	c.(277-279)CCC>CCT	p.P93P	LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Silent_p.P93P|LIG1_uc010xzg.1_Silent_p.P63P|LIG1_uc010xzh.1_RNA	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	93					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	TGGCAGGACGGGGCGGGGAGA	0.562								NER					48	101					0	0	1	0	0
TULP2	7288	broad.mit.edu	37	19	49391338	49391338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:49391338C>T	uc002pkz.2	-	8	968	c.817G>A	c.(817-819)GAA>AAA	p.E273K		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	273					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		ACGTAGGCTTCCATGTCCTCC	0.642													12	28					0	0	1	0	0
NUCB1	4924	broad.mit.edu	37	19	49416303	49416303	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:49416303T>A	uc002plb.3	+	6	588	c.516T>A	c.(514-516)CAT>CAA	p.H172Q	NUCB1_uc002pla.2_Missense_Mutation_p.H172Q|NUCB1_uc002plc.2_Missense_Mutation_p.H172Q	NM_006184	NP_006175	Q02818	NUCB1_HUMAN	nucleobindin 1 precursor	172	Potential.|Potential.					ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|membrane|microtubule cytoskeleton	calcium ion binding|DNA binding				0		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000171)|all cancers(93;0.000333)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0244)		ACGCAGCCCATCATGAAGAGT	0.597													37	83					0	0	1	0	0
ALDH16A1	126133	broad.mit.edu	37	19	49963007	49963007	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:49963007T>C	uc002pnt.2	+	4	517	c.401T>C	c.(400-402)GTT>GCT	p.V134A	ALDH16A1_uc010yar.1_Missense_Mutation_p.V134A|ALDH16A1_uc010yas.1_5'UTR|ALDH16A1_uc010yat.1_Intron	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	134							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		GTTCGAGAGGTTCGAGACGGG	0.647													13	37					0	0	1	0	0
PRR12	57479	broad.mit.edu	37	19	50098289	50098289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:50098289G>A	uc002poo.3	+	4	697	c.697G>A	c.(697-699)GAC>AAC	p.D233N		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		TGGCCCCCCAGACCCACCACC	0.697													8	10					0	0	1	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50461681	50461681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:50461681C>T	uc010ybh.1	-	8	1601	c.1510G>A	c.(1510-1512)GAG>AAG	p.E504K	SIGLEC11_uc010ybi.1_Intron	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	504	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GGGGTGACCTCGAAGGAGCCC	0.692													9	33					0	0	1	0	0
KLK6	5653	broad.mit.edu	37	19	51465129	51465129	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:51465129G>A	uc002pui.2	-	6	713	c.453C>T	c.(451-453)TTC>TTT	p.F151F	KLK6_uc010eoj.2_Intron|KLK6_uc002puh.2_Silent_p.F160F|KLK6_uc002puj.2_Silent_p.F44F|KLK6_uc010ycn.1_Silent_p.F44F|KLK6_uc002pul.2_Silent_p.F151F|KLK6_uc002pum.2_Silent_p.F44F	NM_001012964	NP_001012982	Q92876	KLK6_HUMAN	kallikrein-related peptidase 6 isoform A	151	Peptidase S1.				amyloid precursor protein metabolic process|central nervous system development|collagen catabolic process|hormone metabolic process|myelination|positive regulation of G-protein coupled receptor protein signaling pathway|protein autoprocessing|proteolysis|regulation of cell differentiation|tissue regeneration	endoplasmic reticulum|extracellular region|microsome|mitochondrion|nucleolus	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00372)|GBM - Glioblastoma multiforme(134;0.00871)		TGGTGTCAGGGAAATCACCTG	0.587													22	46					0	0	1	0	0
KLK7	5650	broad.mit.edu	37	19	51483547	51483547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:51483547G>A	uc002puo.2	-	4	520	c.418C>T	c.(418-420)CCT>TCT	p.P140S	KLK7_uc002pup.2_Missense_Mutation_p.P140S|KLK7_uc010yco.1_Missense_Mutation_p.P14S|KLK7_uc010eok.2_Missense_Mutation_p.P68S	NM_139277	NP_644806	P49862	KLK7_HUMAN	stratum corneum chymotryptic enzyme	140	Peptidase S1.				epidermis development|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00382)|GBM - Glioblastoma multiforme(134;0.00895)		GTGGTTCCAGGGGGTTCGCAG	0.468													6	34					0	0	1	0	0
KLK9	284366	broad.mit.edu	37	19	51509946	51509946	+	Silent	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:51509946G>T	uc002pux.1	-	3	321	c.234C>A	c.(232-234)CTC>CTA	p.L78L	KLK9_uc002puw.1_RNA|KLK9_uc010eol.1_Silent_p.L49L|KLK9_uc002puv.1_5'Flank	NM_012315	NP_036447	Q9UKQ9	KLK9_HUMAN	kallikrein-related peptidase 9 precursor	78	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.0652)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		CCCATTTCCAGAGGTGGTGCT	0.582													14	23					1.5842e-08	1.6041e-08	1	1	0
SIGLEC7	27036	broad.mit.edu	37	19	51645996	51645996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:51645996C>T	uc002pvv.1	+	1	439	c.370C>T	c.(370-372)CGT>TGT	p.R124C	SIGLEC7_uc002pvw.1_Missense_Mutation_p.R124C|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_Missense_Mutation_p.R124C	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	124	Extracellular (Potential).	Sialic acid.			cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		ATACTTCTTTCGTATGGAGAA	0.478													31	51					0	0	1	0	0
ZNF841	284371	broad.mit.edu	37	19	52569316	52569316	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:52569316T>A	uc002pyl.1	-	5	2023	c.1471A>T	c.(1471-1473)ATT>TTT	p.I491F	ZNF841_uc010ydh.1_Missense_Mutation_p.I607F|ZNF841_uc010epk.1_Intron	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	491	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCACTGTCAATGAAGACCTTG	0.438													37	78					0	0	1	0	0
ZNF610	162963	broad.mit.edu	37	19	52857061	52857061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:52857061G>A	uc002pyx.3	+	4	596	c.190G>A	c.(190-192)GGA>AGA	p.G64R	ZNF610_uc002pyy.3_Missense_Mutation_p.G64R|ZNF610_uc002pyz.3_Missense_Mutation_p.G64R|ZNF610_uc002pza.2_Missense_Mutation_p.G64R	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	64	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		GGTCTTTCTGGGTGAGGATGA	0.507													29	86					0	0	1	0	0
VN1R2	317701	broad.mit.edu	37	19	53762570	53762570	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:53762570C>T	uc002qbi.2	+	1	1026	c.942C>T	c.(940-942)ATC>ATT	p.I314I		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	314	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		ACAGAGCCATCCAAAGCATCC	0.468													38	93					0	0	1	0	0
MIR519D	574480	broad.mit.edu	37	19	54216635	54216635	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:54216635C>T	hsa-mir-519d|MI0003162	+			c.35C>T																				0						GAAGCGCTTTCTGTTTGTTTT	0.438													27	58					0	0	1	0	0
MIR516B2	574485	broad.mit.edu	37	19	54228773	54228773	+	RNA	SNP	C	T	T	rs141891128	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:54228773C>T	hsa-mir-516b-2|MI0003167	+			c.78C>T			MIR526A2_hsa-mir-526a-2|MI0003168_5'Flank																	0						GAGGGTTACTCTTTGAGAAAA	0.393													9	17					0	0	1	0	0
MIR517C	574492	broad.mit.edu	37	19	54244625	54244625	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:54244625C>T	hsa-mir-517c|MI0003174	+			c.59C>T			MIR520H_hsa-mir-520h|MI0003175_5'Flank|uc010yeb.1_5'Flank																	0						AAGAAAAGATCGTGCATCCTT	0.393													15	29					0	0	1	0	0
LILRB5	10990	broad.mit.edu	37	19	54759940	54759940	+	Silent	SNP	C	T	T	rs144716655		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:54759940C>T	uc002qex.2	-	4	732	c.621G>A	c.(619-621)TCG>TCA	p.S207S	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Silent_p.S198S|LILRB5_uc002qey.2_Silent_p.S207S|LILRB5_uc002qez.2_Intron|LILRB5_uc002qfa.1_Intron|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	207	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CACTGGGGTTCGACCACACCT	0.522													38	66					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54802747	54802747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:54802747G>A	uc002qfd.2	-	5	759	c.694C>T	c.(694-696)CCG>TCG	p.P232S	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.P168S	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	232	Ig-like C2-type 3.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ACAGGACCCGGCTGCACTGAG	0.572													20	6					0	0	1	0	0
LAIR1	3903	broad.mit.edu	37	19	54872792	54872792	+	Missense_Mutation	SNP	G	A	A	rs141229178		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:54872792G>A	uc002qfk.1	-	3	405	c.95C>T	c.(94-96)TCG>TTG	p.S32L	LAIR1_uc002qfl.1_Missense_Mutation_p.S32L|LAIR1_uc002qfm.1_Missense_Mutation_p.S31L|LAIR1_uc002qfn.1_Missense_Mutation_p.S31L|LAIR1_uc010yex.1_Missense_Mutation_p.S25L|LAIR1_uc002qfo.2_Missense_Mutation_p.S14L	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	32	Extracellular (Potential).|Ig-like C2-type.					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		TGGCTCAGCCGAGATGGAGGG	0.507													40	92					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55349114	55349114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:55349114G>A	uc002qhm.1	+	3	200	c.154G>A	c.(154-156)GAT>AAT	p.D52N	KIR2DS4_uc010yfj.1_Missense_Mutation_p.D45N|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.D52N|KIR2DS4_uc002qhn.1_5'UTR	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	52	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		ATGTTGGTCGGATGTCATGTT	0.498													95	55					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55494523	55494523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:55494523G>A	uc002qij.2	+	6	1543	c.1457G>A	c.(1456-1458)GGA>GAA	p.G486E	NLRP2_uc010yfp.1_Missense_Mutation_p.G463E|NLRP2_uc010esn.2_Missense_Mutation_p.G462E|NLRP2_uc010eso.2_Missense_Mutation_p.G483E|NLRP2_uc010esp.2_Missense_Mutation_p.G464E	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	486	NACHT.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		TTCCTGGACGGAGACATCCTC	0.617													22	39					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55501423	55501423	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:55501423G>A	uc002qij.2	+	9	2486	c.2400G>A	c.(2398-2400)TGG>TGA	p.W800*	NLRP2_uc010yfp.1_Nonsense_Mutation_p.W777*|NLRP2_uc010esn.2_Nonsense_Mutation_p.W776*|NLRP2_uc010eso.2_Nonsense_Mutation_p.W797*|NLRP2_uc010esp.2_Nonsense_Mutation_p.W778*	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	800					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CTCAGCAGTGGGCTGATCTCT	0.418													36	79					0	0	1	0	0
CCDC106	29903	broad.mit.edu	37	19	56163871	56163871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:56163871G>A	uc002qlr.2	+	6	1337	c.602G>A	c.(601-603)CGG>CAG	p.R201Q	CCDC106_uc002qls.2_Missense_Mutation_p.R201Q|U2AF2_uc002qlt.2_5'Flank|U2AF2_uc002qlu.2_5'Flank	NM_013301	NP_037433	Q9BWC9	CC106_HUMAN	coiled-coil domain containing 106	201						nucleus					0		Colorectal(82;0.00403)|Ovarian(87;0.133)	BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		AGCATGTCGCGGGCCTTCGAG	0.667													20	38					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56243804	56243804	+	Missense_Mutation	SNP	C	T	T	rs146896528		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:56243804C>T	uc002qly.2	-	2	1421	c.1393G>A	c.(1393-1395)GAT>AAT	p.D465N		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	465	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GGGTTAGGATCGTCTTTGGGT	0.483													49	127					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56300293	56300293	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:56300293A>G	uc010ygf.1	-	11	3446	c.2735T>C	c.(2734-2736)GTT>GCT	p.V912A	NLRP11_uc002qlz.2_Missense_Mutation_p.V759A|NLRP11_uc002qmb.2_Missense_Mutation_p.V813A|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	912							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GGTGGTAAGAACAGAGGCAAG	0.453													13	45					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56321651	56321651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:56321651C>T	uc010ygf.1	-	5	1036	c.325G>A	c.(325-327)GAA>AAA	p.E109K	NLRP11_uc002qlz.2_Missense_Mutation_p.E10K|NLRP11_uc002qmb.2_Missense_Mutation_p.E10K|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	109							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GTGTGACTTTCCCATTGCAGC	0.378													7	20					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56369832	56369832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:56369832G>A	uc002qmd.3	+	3	1495	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	NLRP4_uc002qmf.2_Missense_Mutation_p.G283E|NLRP4_uc010etf.2_Missense_Mutation_p.G189E	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	358	NACHT.						ATP binding	p.G358R(1)		ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ATGCAGAAAGGAAAAGACCTG	0.512													17	43					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56421954	56421954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:56421954G>A	uc010ygg.1	-	6	2282	c.2257C>T	c.(2257-2259)CCA>TCA	p.P753S		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	753							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TTGCATCTTGGATTTTTCAGT	0.458													21	61					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56481950	56481950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:56481950C>T	uc002qmh.2	+	6	2493	c.2422C>T	c.(2422-2424)CTT>TTT	p.L808F	NLRP8_uc010etg.2_Missense_Mutation_p.L808F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	808						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTGGACTGATCTTGGCAATAA	0.478													42	122					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56549405	56549405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:56549405G>A	uc002qmj.2	+	10	2630	c.2630G>A	c.(2629-2631)GGA>GAA	p.G877E	NLRP5_uc002qmi.2_Missense_Mutation_p.G858E	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	877	LRR 6.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GATTGCTGTGGATTGACCCAT	0.443													14	37					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57640381	57640381	+	Missense_Mutation	SNP	C	T	T	rs147501741	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:57640381C>T	uc002qny.2	+	4	694	c.338C>T	c.(337-339)TCT>TTT	p.S113F		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	113					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CCCATGAAATCTGATGATGAT	0.353													8	24					0	0	1	0	0
ZNF530	348327	broad.mit.edu	37	19	58117086	58117086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:58117086C>T	uc002qpk.2	+	3	413	c.193C>T	c.(193-195)CCT>TCT	p.P65S	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	65	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TGAGGGGACGCCTTCTGCAGA	0.468													14	60					0	0	1	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58189737	58189737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr19:58189737G>A	uc002qpu.2	+	5	1463	c.766G>A	c.(766-768)GGG>AGG	p.G256R		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	256					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATCTCAGGAAGGGTCCATAAA	0.512													10	45					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1914070	1914070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:1914070C>T	uc002qxe.2	-	13	2586	c.1759G>A	c.(1759-1761)GAA>AAA	p.E587K	MYT1L_uc002qxd.2_Missense_Mutation_p.E585K|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	587					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TGGTGCTTTTCCTGTGCCTTG	0.592													15	40					0	0	1	0	0
SOX11	6664	broad.mit.edu	37	2	5833756	5833756	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:5833756G>A	uc002qyj.2	+	1	958	c.903G>A	c.(901-903)GCG>GCA	p.A301A		NM_003108	NP_003099	P35716	SOX11_HUMAN	SRY-box 11	301					cardiac ventricle formation|closure of optic fissure|cornea development in camera-type eye|embryonic digestive tract morphogenesis|embryonic skeletal system morphogenesis|eyelid development in camera-type eye|glial cell proliferation|hard palate development|lens morphogenesis in camera-type eye|limb bud formation|lung morphogenesis|negative regulation of cell death|negative regulation of glial cell proliferation|negative regulation of lymphocyte proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|neural crest cell development|neural tube formation|neuroepithelial cell differentiation|noradrenergic neuron differentiation|outflow tract morphogenesis|positive regulation of BMP signaling pathway|positive regulation of hippo signaling cascade|positive regulation of hormone secretion|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of ossification|positive regulation of osteoblast differentiation|positive regulation of stem cell proliferation|regulation of transforming growth factor beta receptor signaling pathway|signal transduction involved in G1/S transition checkpoint|soft palate development|somite development|spinal cord development|sympathetic nervous system development|ventricular septum morphogenesis	cytoplasm|nucleolus	enhancer sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity|translation factor activity, nucleic acid binding			central_nervous_system(3)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			OV - Ovarian serous cystadenocarcinoma(76;0.132)		GGGCCGGCGCGACCTCGGGCG	0.726													3	6					0	0	1	0	0
ASAP2	8853	broad.mit.edu	37	2	9490987	9490987	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:9490987C>T	uc002qzh.2	+	12	1414	c.1074C>T	c.(1072-1074)ACC>ACT	p.T358T	ASAP2_uc002qzi.2_Silent_p.T358T	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	358	PH.				regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						AGGTGAAGACCAACCCTGAGG	0.512													11	28					0	0	1	0	0
ROCK2	9475	broad.mit.edu	37	2	11364448	11364448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:11364448C>T	uc002rbd.1	-	7	1456	c.1007G>A	c.(1006-1008)AGG>AAG	p.R336K		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	336	Protein kinase.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		TGTACATTACCTATCTGTTAA	0.318													15	36					0	0	1	0	0
ROCK2	9475	broad.mit.edu	37	2	11389844	11389844	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:11389844G>A	uc002rbd.1	-	4	854	c.405C>T	c.(403-405)GCC>GCT	p.A135A		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	135	Protein kinase.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		CCCAAAAAAAGGCAGAATCTG	0.353													32	79					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18767584	18767584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:18767584G>A	uc002rcz.2	-	4	478	c.374C>T	c.(373-375)TCC>TTC	p.S125F	NT5C1B_uc002rcy.2_Missense_Mutation_p.S125F|NT5C1B_uc010exr.2_Missense_Mutation_p.S65F|NT5C1B_uc010yju.1_Missense_Mutation_p.S65F|NT5C1B_uc002rda.2_Missense_Mutation_p.S65F|NT5C1B_uc010yjv.1_Missense_Mutation_p.S142F|NT5C1B_uc010yjw.1_Missense_Mutation_p.S108F|NT5C1B_uc010exs.2_Missense_Mutation_p.S125F|NT5C1B_uc002rdb.1_5'Flank	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	125	Ser-rich.				purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TGGGCTCCGGGATATTCTAGA	0.493													27	50					0	0	1	0	0
WDR35	57539	broad.mit.edu	37	2	20114007	20114007	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:20114007G>A	uc002rdi.2	-	27	3294	c.3186C>T	c.(3184-3186)ATC>ATT	p.I1062I	WDR35_uc002rdj.2_Silent_p.I1051I|WDR35_uc010ext.2_RNA|WDR35_uc002rdh.2_Intron	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	1062										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCACAGGAGGGATGATGTCTT	0.388													18	38					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21229833	21229833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:21229833C>T	uc002red.2	-	26	10035	c.9907G>A	c.(9907-9909)GAG>AAG	p.E3303K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3303					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACTGGCAGCTCTAATGATGGC	0.443													158	403					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21231384	21231384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:21231384C>T	uc002red.2	-	26	8484	c.8356G>A	c.(8356-8358)GAA>AAA	p.E2786K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2786					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATACCTGCTTCGTTTGCTGAG	0.403													204	445					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21245703	21245703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:21245703C>T	uc002red.2	-	18	2944	c.2816G>A	c.(2815-2817)GGC>GAC	p.G939D		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	939	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAAGAATTACCCTCCACTGAG	0.468													74	169					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21249823	21249823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:21249823C>T	uc002red.2	-	15	2209	c.2081G>A	c.(2080-2082)GGA>GAA	p.G694E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	694					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAAGCCTTTTCCTTCCAAGCC	0.418													84	176					0	0	1	0	0
ASXL2	55252	broad.mit.edu	37	2	25965059	25965059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:25965059G>A	uc002rgs.2	-	12	4368	c.4147C>T	c.(4147-4149)CCT>TCT	p.P1383S	ASXL2_uc002rgt.1_Missense_Mutation_p.P866S	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	1383					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCTGAACAGGAATGGTCTGG	0.502													24	91					0	0	1	0	0
ASXL2	55252	broad.mit.edu	37	2	25973192	25973193	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:25973192_25973193GG>AA	uc002rgs.2	-	11	1453_1454	c.1232_1233CC>TT	c.(1231-1233)TCC>TTT	p.S411F	ASXL2_uc002rgt.1_Missense_Mutation_p.S151F	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	411					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACACAGGCATGGATTTTGGTTG	0.446													69	180					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26693463	26693463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:26693463C>T	uc002rhk.2	-	32	4148	c.4021G>A	c.(4021-4023)GAG>AAG	p.E1341K	OTOF_uc010yla.1_Missense_Mutation_p.E71K|OTOF_uc002rhh.2_Missense_Mutation_p.E574K|OTOF_uc002rhi.2_Missense_Mutation_p.E651K|OTOF_uc002rhj.2_Missense_Mutation_p.E574K	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1341	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTCTCACCTCCTTCATGGTG	0.582													52	80					0	0	1	0	0
SUPT7L	9913	broad.mit.edu	37	2	27880321	27880321	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:27880321A>G	uc002rlh.1	-	4	978	c.635T>C	c.(634-636)TTT>TCT	p.F212S	SUPT7L_uc002rli.1_Missense_Mutation_p.F212S|SUPT7L_uc010ymf.1_Missense_Mutation_p.F77S|SUPT7L_uc002rlj.1_Missense_Mutation_p.F210S|SUPT7L_uc010ezh.1_Missense_Mutation_p.F210S	NM_014860	NP_055675	O94864	ST65G_HUMAN	SPTF-associated factor 65 gamma	212					histone H3 acetylation|maintenance of protein location in nucleus|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					CACATCAGGAAAAGGAGTCTG	0.522													9	28					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28748155	28748155	+	Missense_Mutation	SNP	G	A	A	rs139585910		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:28748155G>A	uc002rmb.1	+	5	265	c.265G>A	c.(265-267)GAT>AAT	p.D89N	PLB1_uc010ezj.1_Missense_Mutation_p.D89N	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	89	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					AGGGACGGGCGATCTGGAGAA	0.348													12	18					0	0	1	0	0
PPP1CB	5500	broad.mit.edu	37	2	29016845	29016845	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:29016845T>C	uc002rmg.2	+	8	1021	c.861T>C	c.(859-861)ACT>ACC	p.T287T	PPP1CB_uc010ymj.1_Silent_p.T259T|PPP1CB_uc010yml.1_Silent_p.T259T|PPP1CB_uc002rmh.2_Silent_p.T287T|SPDYA_uc002rmi.2_5'UTR	NM_206876	NP_996759	P62140	PP1B_HUMAN	protein phosphatase 1, catalytic subunit, beta	287					cell cycle|cell division|glycogen metabolic process|triglyceride catabolic process	MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|myosin phosphatase activity|myosin-light-chain-phosphatase activity|protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGGATGAAACTTTGATGTGTT	0.313													13	30					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29296596	29296596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:29296596C>T	uc002rmt.1	-	1	532	c.532G>A	c.(532-534)GAG>AAG	p.E178K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	178					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						ACCAGAGGCTCCGGGAAGTCC	0.522													28	51					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29498005	29498005	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:29498005C>T	uc002rmy.2	-	11	2908	c.2001G>A	c.(1999-2001)GGG>GGA	p.G667G		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	667	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GTGAATTTTCCCCGGGTTTCA	0.458			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				22	49					0	0	1	0	0
NLRC4	58484	broad.mit.edu	37	2	32474961	32474961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:32474961C>T	uc002roi.2	-	4	2218	c.1972G>A	c.(1972-1974)GAA>AAA	p.E658K	NLRC4_uc002roj.1_Missense_Mutation_p.E658K|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	658	LRR 4.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GTCCTGAATTCCTGCTTCCAG	0.483													30	106					0	0	1	0	0
BIRC6	57448	broad.mit.edu	37	2	32832604	32832604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:32832604C>T	uc010ezu.2	+	72	14287	c.14153C>T	c.(14152-14154)CCC>CTC	p.P4718L		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4718					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					AGAGGCACTCCCAGTGGCACA	0.418													43	83					0	0	1	0	0
RASGRP3	25780	broad.mit.edu	37	2	33740208	33740208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:33740208G>A	uc002rox.2	+	4	632	c.5G>A	c.(4-6)GGA>GAA	p.G2E	RASGRP3_uc010ync.1_Missense_Mutation_p.G2E|RASGRP3_uc002roy.2_Missense_Mutation_p.G2E	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	2					MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					ATAACCATGGGATCAAGTGGC	0.428													27	56					0	0	1	0	0
ZFP36L2	678	broad.mit.edu	37	2	43451460	43451460	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:43451460A>T	uc002rsv.3	-	2	1774	c.1483T>A	c.(1483-1485)TGA>AGA	p.*495R	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	495					cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				CTCTTGCCTCAGTCGTCGGAG	0.682													4	11					0	0	1	0	0
PREPL	9581	broad.mit.edu	37	2	44573430	44573430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:44573430C>T	uc002ruf.2	-	2	354	c.319G>A	c.(319-321)GAA>AAA	p.E107K	PREPL_uc002rug.2_Missense_Mutation_p.E107K|PREPL_uc002ruh.2_Missense_Mutation_p.E107K|PREPL_uc010fax.2_Missense_Mutation_p.E107K|PREPL_uc002rui.3_Missense_Mutation_p.E18K|PREPL_uc002ruj.1_Missense_Mutation_p.E18K|PREPL_uc002ruk.1_Missense_Mutation_p.E107K	NM_006036	NP_006027	Q4J6C6	PPCEL_HUMAN	prolyl endopeptidase-like isoform C	107					proteolysis	cytosol	serine-type endopeptidase activity			ovary(1)	1		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				ATTTCATATTCTTCTTGTGGC	0.318													12	32					0	0	1	0	0
CRIPT	9419	broad.mit.edu	37	2	46850910	46850910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:46850910C>T	uc002rve.2	+	4	242	c.145C>T	c.(145-147)CCA>TCA	p.P49S		NM_014171	NP_054890	Q9P021	CRIPT_HUMAN	postsynaptic protein CRIPT	49						cell junction|cytoplasm|dendritic spine					0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			TAGATTTGATCCATATGGAAA	0.239													6	13					0	0	1	0	0
MIR216A	406998	broad.mit.edu	37	2	56216086	56216086	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:56216086C>T	hsa-mir-216a|MI0000292	-			c.109C>T			uc002rzk.2_Intron|uc010ype.1_RNA																	0						TCTTTTGATTCGTGAGGGCTA	0.423													39	105					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60687865	60687865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:60687865G>A	uc002sae.1	-	4	2410	c.2182C>T	c.(2182-2184)CCG>TCG	p.P728S	BCL11A_uc002sab.2_Missense_Mutation_p.P728S|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.P397S|BCL11A_uc010ypj.1_Missense_Mutation_p.P694S|BCL11A_uc002sad.1_Missense_Mutation_p.P576S|BCL11A_uc002saf.1_Missense_Mutation_p.P694S	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	728					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CCCGGGCCCGGACCACTAATA	0.627			T	IGH@	B-CLL								109	262					0	0	1	0	0
SERTAD2	9792	broad.mit.edu	37	2	64863943	64863943	+	Silent	SNP	G	A	A	rs78389198	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:64863943G>A	uc002sde.1	-	2	360	c.63C>T	c.(61-63)ATC>ATT	p.I21I		NM_014755	NP_055570	Q14140	SRTD2_HUMAN	SERTA domain containing 2	21					negative regulation of cell growth|transcription, DNA-dependent	cytoplasm|nucleus					0						AGGGAGACACGATTTTGCCTT	0.468													32	67					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71778824	71778824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:71778824C>T	uc002sie.2	+	19	2102	c.1726C>T	c.(1726-1728)CCT>TCT	p.P576S	DYSF_uc010feg.2_Missense_Mutation_p.P607S|DYSF_uc010feh.2_Missense_Mutation_p.P562S|DYSF_uc002sig.3_Missense_Mutation_p.P562S|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P576S|DYSF_uc010fef.2_Missense_Mutation_p.P593S|DYSF_uc010fei.2_Missense_Mutation_p.P593S|DYSF_uc010fek.2_Missense_Mutation_p.P594S|DYSF_uc010fej.2_Missense_Mutation_p.P563S|DYSF_uc010fel.2_Missense_Mutation_p.P563S|DYSF_uc010feo.2_Missense_Mutation_p.P608S|DYSF_uc010fem.2_Missense_Mutation_p.P577S|DYSF_uc010fen.2_Missense_Mutation_p.P594S|DYSF_uc002sif.2_Missense_Mutation_p.P577S	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	576	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGAGGACCTTCCTGCGGATGA	0.652													7	32					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71825771	71825771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:71825771G>A	uc002sie.2	+	33	3974	c.3598G>A	c.(3598-3600)GAC>AAC	p.D1200N	DYSF_uc010feg.2_Missense_Mutation_p.D1231N|DYSF_uc010feh.2_Missense_Mutation_p.D1186N|DYSF_uc002sig.3_Missense_Mutation_p.D1186N|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.D1200N|DYSF_uc010fef.2_Missense_Mutation_p.D1217N|DYSF_uc010fei.2_Missense_Mutation_p.D1217N|DYSF_uc010fek.2_Missense_Mutation_p.D1218N|DYSF_uc010fej.2_Missense_Mutation_p.D1187N|DYSF_uc010fel.2_Missense_Mutation_p.D1187N|DYSF_uc010feo.2_Missense_Mutation_p.D1232N|DYSF_uc010fem.2_Missense_Mutation_p.D1201N|DYSF_uc010fen.2_Missense_Mutation_p.D1218N|DYSF_uc002sif.2_Missense_Mutation_p.D1201N|DYSF_uc010yqy.1_Missense_Mutation_p.D81N	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1200	Cytoplasmic (Potential).|C2 4.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CCCCACCTGGGACCAGACGCT	0.592													22	38					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71895908	71895908	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:71895908C>T	uc002sie.2	+	48	5741	c.5365C>T	c.(5365-5367)CTA>TTA	p.L1789L	DYSF_uc010feg.2_Silent_p.L1820L|DYSF_uc010feh.2_Silent_p.L1796L|DYSF_uc002sig.3_Silent_p.L1775L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.L1810L|DYSF_uc010fef.2_Silent_p.L1827L|DYSF_uc010fei.2_Silent_p.L1806L|DYSF_uc010fek.2_Silent_p.L1807L|DYSF_uc010fej.2_Silent_p.L1797L|DYSF_uc010fel.2_Silent_p.L1776L|DYSF_uc010feo.2_Silent_p.L1821L|DYSF_uc010fem.2_Silent_p.L1811L|DYSF_uc010fen.2_Silent_p.L1828L|DYSF_uc002sif.2_Silent_p.L1790L|DYSF_uc010yqy.1_Silent_p.L670L|DYSF_uc010yqz.1_Silent_p.L550L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1789	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GTGGGTCGACCTATTTCCGAA	0.507													12	21					0	0	1	0	0
EXOC6B	23233	broad.mit.edu	37	2	72723613	72723613	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:72723613T>C	uc010fep.2	-	14	1551	c.1413A>G	c.(1411-1413)CAA>CAG	p.Q471Q	EXOC6B_uc002sij.2_Silent_p.Q471Q	NM_015189	NP_056004	Q9Y2D4	EXC6B_HUMAN	SEC15-like 2	471					protein transport|vesicle docking involved in exocytosis	exocyst				central_nervous_system(2)	2						GAAATGGGAATTGTCCTACCA	0.343													3	12					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74462281	74462281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:74462281C>T	uc002sko.1	-	17	2382	c.2380G>A	c.(2380-2382)GAT>AAT	p.D794N	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.D794N|SLC4A5_uc010ffc.1_Missense_Mutation_p.D794N|SLC4A5_uc002skp.1_Intron|SLC4A5_uc002sks.1_Intron	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	794	Helical; (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						AAACAGGCATCGATTCCACAG	0.522													11	30					0	0	1	0	0
CCDC142	84865	broad.mit.edu	37	2	74709906	74709906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:74709906C>T	uc002slr.2	-	1	452	c.59G>A	c.(58-60)AGG>AAG	p.R20K	TTC31_uc002sls.2_5'Flank|TTC31_uc010yrv.1_5'Flank|TTC31_uc002slt.2_5'Flank|TTC31_uc002slu.2_5'Flank|CCDC142_uc002slo.2_RNA|CCDC142_uc002slq.2_Missense_Mutation_p.R20K|CCDC142_uc002slp.2_Missense_Mutation_p.R20K	NM_032779	NP_116168	Q17RM4	CC142_HUMAN	coiled-coil domain containing 142	20										central_nervous_system(1)	1						GGGTTGCGCCCTCAGCGGGGG	0.667													20	74					0	0	1	0	0
KCMF1	56888	broad.mit.edu	37	2	85262196	85262196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:85262196C>T	uc002sox.3	+	3	586	c.242C>T	c.(241-243)CCC>CTC	p.P81L		NM_020122	NP_064507	Q9P0J7	KCMF1_HUMAN	potassium channel modulatory factor 1	81	C2H2-type.					intracellular	ligase activity|zinc ion binding			ovary(2)	2						TTTACTTGTCCCTATTGTGGA	0.383													11	21					0	0	1	0	0
POLR1A	25885	broad.mit.edu	37	2	86265830	86265830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:86265830C>T	uc002sqs.2	-	27	4406	c.4027G>A	c.(4027-4029)GAA>AAA	p.E1343K	POLR1A_uc010ytb.1_Missense_Mutation_p.E709K|POLR1A_uc002sqt.1_Missense_Mutation_p.E366K	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	1343					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						GACCTTGTTTCCATGAAGCGC	0.532													17	25					0	0	1	0	0
CD8B	926	broad.mit.edu	37	2	87085511	87085511	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:87085511C>T	uc002srz.2	-	2	122	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q	RMND5A_uc002srs.3_Intron|CD8B_uc002srw.2_Silent_p.Q24Q|CD8B_uc002srx.2_Silent_p.Q24Q|CD8B_uc002sry.2_Silent_p.Q24Q|CD8B_uc010fgt.2_Silent_p.Q24Q|CD8B_uc002ssa.2_Silent_p.Q24Q|CD8B_uc010yto.1_Silent_p.Q24Q	NM_004931	NP_004922	P10966	CD8B_HUMAN	CD8b antigen isoform 5 precursor	24	Ig-like V-type.|Extracellular (Potential).				immune response|regulation of defense response to virus by virus|regulation of immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway|viral reproduction	early endosome|extracellular region|integral to plasma membrane|T cell receptor complex	coreceptor activity|MHC class I protein binding			upper_aerodigestive_tract(1)|skin(1)	2						ATGCAGGGGTCTGCTGGAGGA	0.502													10	26					0	0	1	0	0
RGPD1	400966	broad.mit.edu	37	2	88125213	88125213	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:88125213G>A	uc010fhc.1	-	1	103	c.36C>T	c.(34-36)CTC>CTT	p.L12L		NM_001024457	NP_001019628	Q68DN6	RGPD1_HUMAN	RANBP2-like and GRIP domain containing 1	Error:Variant_position_missing_in_Q68DN6_after_alignment					intracellular transport		binding				0						GCACCGAGGCGAGGTACCGCT	0.537													5	7					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89292187	89292187	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:89292187G>A	uc010ytr.1	-	82		c.7019C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGAGAATGAGGATGGAGACTG	0.448													65	167					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90260185	90260185	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:90260185C>T	uc010fhm.2	+	30		c.4168C>T								Parts of antibodies, mostly variable regions.																		TCACTCTCACCATCAGTTGCC	0.488													54	130					0	0	1	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95464752	95464752	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:95464752C>T	uc010fhp.2	-	17		c.2638G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GCCGTAAGATCATCAAACTGC	0.308													6	10					0	0	1	0	0
ASTL	431705	broad.mit.edu	37	2	96798415	96798415	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:96798415G>A	uc010yui.1	-	6	501	c.501C>T	c.(499-501)TCC>TCT	p.S167S		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	167					proteolysis		metalloendopeptidase activity|zinc ion binding				0						TGGGCGCCAGGGAGACCACCT	0.647													23	67					0	0	1	0	0
SEMA4C	54910	broad.mit.edu	37	2	97526700	97526701	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:97526700_97526701GG>AA	uc002sxh.3	-	15	2324_2325	c.2164_2165CC>TT	c.(2164-2166)CCC>TTC	p.P722F	ANKRD39_uc002sxd.3_5'Flank|SEMA4C_uc002sxf.3_Missense_Mutation_p.P222F|SEMA4C_uc002sxe.2_Missense_Mutation_p.P263F|SEMA4C_uc002sxg.3_Missense_Mutation_p.P775F	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	722	Pro-rich.|Cytoplasmic (Potential).				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						TTCAGGACAGGGCCGGAAGGGG	0.604													14	29					0	0	1	0	0
LYG2	254773	broad.mit.edu	37	2	99861749	99861749	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:99861749C>T	uc002szw.1	-	4	470	c.357G>A	c.(355-357)AGG>AGA	p.R119R	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_Silent_p.R119R|LYG2_uc002szx.1_Silent_p.R119R	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	119					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						ATTTAAGTCCCCTGTGGTCCC	0.517													11	48					0	0	1	0	0
REV1	51455	broad.mit.edu	37	2	100050810	100050810	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:100050810G>A	uc002tad.2	-	8	1634	c.1422C>T	c.(1420-1422)ATC>ATT	p.I474I	REV1_uc002tac.2_Silent_p.I474I	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	474	UmuC.				DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						TGCCTTTCAGGATTTTATTCT	0.458								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					24	48					0	0	1	0	0
MAP4K4	9448	broad.mit.edu	37	2	102486842	102486842	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:102486842A>G	uc002tbg.2	+	21	2537	c.2482A>G	c.(2482-2484)ACC>GCC	p.T828A	MAP4K4_uc002tbc.2_Missense_Mutation_p.T909A|MAP4K4_uc002tbd.2_Missense_Mutation_p.T801A|MAP4K4_uc002tbe.2_Missense_Mutation_p.T747A|MAP4K4_uc002tbf.2_Missense_Mutation_p.T798A|MAP4K4_uc010yvy.1_Missense_Mutation_p.T824A|MAP4K4_uc002tbh.2_Missense_Mutation_p.T746A|MAP4K4_uc002tbi.2_Missense_Mutation_p.T631A|MAP4K4_uc010yvz.1_Missense_Mutation_p.T804A|MAP4K4_uc002tbk.2_Missense_Mutation_p.T283A|MAP4K4_uc002tbl.2_Missense_Mutation_p.T14A	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	828					intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GCCGGCCATGACCCCATCCAA	0.478													5	14					0	0	1	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105896936	105896936	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:105896936A>G	uc002tcq.2	-	6	1450	c.1366T>C	c.(1366-1368)TAT>CAT	p.Y456H	TGFBRAP1_uc010fjc.2_Missense_Mutation_p.Y226H|TGFBRAP1_uc002tcr.3_Missense_Mutation_p.Y456H	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	456					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						GCCTCTGCATACAGTTTGAGC	0.537													18	39					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107042458	107042458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:107042458G>A	uc010ywi.1	-	19	2749	c.2692C>T	c.(2692-2694)CCC>TCC	p.P898S		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	898					intracellular transport		binding			ovary(1)	1						ACCTTTGTGGGAGTAACATTA	0.313													20	70					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108488609	108488609	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:108488609G>A	uc010ywk.1	+	20	4231	c.4149G>A	c.(4147-4149)AAG>AAA	p.K1383K	RGPD4_uc002tdu.2_Silent_p.K570K|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1383	RanBD1 2.				intracellular transport		binding			skin(2)	2						GTGATATAAAGATTTTACAGA	0.348													54	162					0	0	1	0	0
RANBP2	5903	broad.mit.edu	37	2	109384069	109384069	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:109384069G>A	uc002tem.3	+	20	7200	c.7074G>A	c.(7072-7074)AAG>AAA	p.K2358K		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2358	RanBD1 3.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GTGATATAAAGATTTTACAGA	0.348													6	305					0	0	1	0	0
PAX8	7849	broad.mit.edu	37	2	113993093	113993093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:113993093G>A	uc010yxt.1	-	9	1131	c.965C>T	c.(964-966)TCC>TTC	p.S322F	PAX8_uc010yxu.1_Intron|PAX8_uc010yxv.1_Intron|PAX8_uc002tjm.2_Intron|PAX8_uc002tjn.2_Intron|uc002tjp.2_5'Flank|LOC654433_uc002tjq.3_5'Flank|LOC654433_uc010fks.2_5'Flank|LOC654433_uc010fkt.2_5'Flank|LOC654433_uc002tjr.3_5'Flank	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	322	Ser-rich.			S -> C (in Ref. 1; X69699).	branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						AGATAAAGAGGAAGGGGTGGA	0.592			T	PPARG	follicular thyroid		Thyroid dysgenesis 						10	25					0	0	1	0	0
DPP10	57628	broad.mit.edu	37	2	116101467	116101467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:116101467C>T	uc002tla.1	+	3	707	c.250C>T	c.(250-252)CCA>TCA	p.P84S	DPP10_uc002tlb.1_Missense_Mutation_p.P34S|DPP10_uc002tlc.1_Missense_Mutation_p.P80S|DPP10_uc002tle.2_Missense_Mutation_p.P88S|DPP10_uc002tlf.1_Missense_Mutation_p.P77S	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	84	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						GCTTCACGATCCAGAGGCTCG	0.323													14	32					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119732105	119732105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:119732105G>A	uc002tln.1	+	6	709	c.577G>A	c.(577-579)GGA>AGA	p.G193R	MARCO_uc010yyf.1_Missense_Mutation_p.G115R	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	193	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGGCCCCTCGGGACCCCAAGG	0.542													11	40					0	0	1	0	0
INHBB	3625	broad.mit.edu	37	2	121107281	121107281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:121107281C>T	uc002tmn.2	+	2	1101	c.1055C>T	c.(1054-1056)ACG>ATG	p.T352M		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	352					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				TCCTTCCACACGGCTGTGGTG	0.622													17	43					0	0	1	0	0
TFCP2L1	29842	broad.mit.edu	37	2	121995273	121995273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:121995273G>A	uc002tmx.2	-	10	1022	c.929C>T	c.(928-930)TCG>TTG	p.S310L	TFCP2L1_uc010flr.2_Missense_Mutation_p.S310L	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	310					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					ATCCTGGATCGAAGCTGATGG	0.592													18	52					0	0	1	0	0
LOC440905	440905	broad.mit.edu	37	2	130785890	130785890	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:130785890C>T	uc002tpz.2	-	11		c.2978G>A			LOC440905_uc002tpy.1_RNA	NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						ACCTGGGTTTCCTTCCAGTGA	0.493													3	18					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130832596	130832596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:130832596C>T	uc010fmh.2	-	17	2849	c.2449G>A	c.(2449-2451)GAG>AAG	p.E817K		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	817	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						GTCATCTTCTCGCGGTTGGCC	0.597													49	130					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130832987	130832987	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:130832987C>T	uc010fmh.2	-	17	2458	c.2058G>A	c.(2056-2058)AGG>AGA	p.R686R		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	686	Potential.					cell cortex	ATP binding			skin(3)|ovary(2)	5						GATTATCATTCCTTTTTTTCA	0.413													18	43					0	0	1	0	0
PTPN18	26469	broad.mit.edu	37	2	131130753	131130753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:131130753C>T	uc002trc.2	+	15	1440	c.1339C>T	c.(1339-1341)CCG>TCG	p.P447S	PTPN18_uc002trd.2_Missense_Mutation_p.P426S|PTPN18_uc002trb.2_Missense_Mutation_p.P340S|PTPN18_uc002tre.2_Missense_Mutation_p.P98S	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	447						cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					CATTGGGAGGCCGAAGGGTCC	0.612													8	6					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	133070520	133070520	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:133070520C>T	uc002ttk.1	+	3		c.174C>T								Homo sapiens cDNA FLJ37280 fis, clone BRAMY2012881.																		CCAGATAAACCTGTACCAAGA	0.448													7	109					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541515	133541515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:133541515C>T	uc002ttp.2	-	14	3243	c.2869G>A	c.(2869-2871)GAA>AAA	p.E957K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	957							protein binding				0						ACCCTGGTTTCGGACTTGGTG	0.567													8	10					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135741291	135741291	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:135741291G>A	uc002tue.1	-	8	3208	c.3177C>T	c.(3175-3177)ATC>ATT	p.I1059I	YSK4_uc002tuf.1_Silent_p.I241I|YSK4_uc010fnc.1_Silent_p.I241I|YSK4_uc010fnd.1_Silent_p.I946I|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Silent_p.I787I|YSK4_uc002tui.3_Silent_p.I1076I	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1059							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TGGTCCATAGGATAGGTTCTT	0.348													19	57					0	0	1	0	0
ZRANB3	84083	broad.mit.edu	37	2	135960445	135960445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:135960445G>A	uc002tum.2	-	20	3215	c.3098C>T	c.(3097-3099)TCC>TTC	p.S1033F	ZRANB3_uc002tuk.2_Missense_Mutation_p.S576F|ZRANB3_uc002tul.2_Missense_Mutation_p.S1031F	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	1033						intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		GTTGTCCAGGGAACACTGTCC	0.463													4	11					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136566146	136566146	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:136566146C>T	uc002tuu.1	-	8	3782	c.3771G>A	c.(3769-3771)CTG>CTA	p.L1257L		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1257	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGATCCAGTTCAGCAGCCTTC	0.552													38	94					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136566496	136566496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:136566496C>T	uc002tuu.1	-	8	3432	c.3421G>A	c.(3421-3423)GAA>AAA	p.E1141K		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1141	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TCAGCGGCTTCCACATCTCTG	0.552													36	49					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136567491	136567491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:136567491G>A	uc002tuu.1	-	8	2437	c.2426C>T	c.(2425-2427)TCT>TTT	p.S809F		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	809	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GCTGTAACCAGAAGGGCCTTC	0.458													20	71					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137990487	137990487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:137990487C>T	uc002tva.1	+	8	1841	c.1841C>T	c.(1840-1842)CCT>CTT	p.P614L	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.P504L	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCATGTCCCCCTAGTCAGGCT	0.458													13	29					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138163337	138163337	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:138163337G>A	uc002tva.1	+	12	2562	c.2562G>A	c.(2560-2562)ACG>ACA	p.T854T	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.T744T	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTGCTCCACGAACTGTGAAG	0.458													6	12					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138169219	138169219	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:138169219T>C	uc002tva.1	+	13	2643	c.2643T>C	c.(2641-2643)CTT>CTC	p.L881L	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.L771L	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ATTCTGACCTTTACCCTCTAG	0.403													24	47					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138208496	138208496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:138208496C>T	uc002tva.1	+	14	2948	c.2948C>T	c.(2947-2949)TCA>TTA	p.S983L	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TCTTGCAGTTCATCTTGTGGA	0.403													7	24					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138208556	138208556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:138208556G>A	uc002tva.1	+	14	3008	c.3008G>A	c.(3007-3009)GGA>GAA	p.G1003E	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTTACAATGGAGGACGACCA	0.393													4	7					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141032006	141032006	+	Missense_Mutation	SNP	C	T	T	rs150457308	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:141032006C>T	uc002tvj.1	-	85	14101	c.13129G>A	c.(13129-13131)GAT>AAT	p.D4377N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4377	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAAAATATATCTTCACTGTCT	0.383										TSP Lung(27;0.18)			10	28					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141208193	141208193	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:141208193C>T	uc002tvj.1	-	63	10973	c.10001G>A	c.(10000-10002)TGG>TAG	p.W3334*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3334	Extracellular (Potential).|LDL-receptor class A 21.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTCACATTTCCACCAGAATGG	0.338										TSP Lung(27;0.18)			15	45					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141773430	141773430	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:141773430C>T	uc002tvj.1	-	13	2997	c.2025G>A	c.(2023-2025)AGG>AGA	p.R675R	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	675	Extracellular (Potential).|LDL-receptor class B 7.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCTTCTCAATCCTTCCCACGC	0.403										TSP Lung(27;0.18)			24	60					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141819748	141819748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:141819748C>T	uc002tvj.1	-	8	2080	c.1108G>A	c.(1108-1110)GAG>AAG	p.E370K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	370	Extracellular (Potential).|LDL-receptor class B 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCTGGCTGCTCTGTCTTTGAA	0.428										TSP Lung(27;0.18)			24	62					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141986902	141986902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:141986902C>T	uc002tvj.1	-	6	1672	c.700G>A	c.(700-702)GAA>AAA	p.E234K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	234	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTATGAATTTCATTTCCATTG	0.294										TSP Lung(27;0.18)			10	33					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149227601	149227601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:149227601C>T	uc002twm.3	+	9	3077	c.2089C>T	c.(2089-2091)CCC>TCC	p.P697S	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P697S|MBD5_uc002twn.1_Missense_Mutation_p.P138S	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	697						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GGGTTCATTTCCCATCAGTTC	0.458													23	48					0	0	1	0	0
RIF1	55183	broad.mit.edu	37	2	152320385	152320385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:152320385C>T	uc002txm.2	+	30	4481	c.4351C>T	c.(4351-4353)CTT>TTT	p.L1451F	RIF1_uc002txl.2_Missense_Mutation_p.L1451F|RIF1_uc002txn.2_Missense_Mutation_p.L1451F|RIF1_uc002txo.2_Missense_Mutation_p.L1451F|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1451					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AGAAAAACCTCTTCAGAAGAG	0.358													20	50					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152432773	152432773	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:152432773G>A	uc010fnx.2	-	78	11888	c.11697C>T	c.(11695-11697)ATC>ATT	p.I3899I	NEB_uc002txr.2_Silent_p.I322I	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3899					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGTCACAAAAGATATTCTGGG	0.478													31	53					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152566275	152566275	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:152566275C>T	uc010fnx.2	-	12	1121	c.930G>A	c.(928-930)AGG>AGA	p.R310R	NEB_uc010fny.1_5'Flank	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	310	Nebulin 7.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CCTGGTATTTCCTCTGTAAGA	0.393													4	12					0	0	1	0	0
TBR1	10716	broad.mit.edu	37	2	162273129	162273129	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:162273129G>T	uc002ubw.1	+	1	510	c.208G>T	c.(208-210)GAC>TAC	p.D70Y	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	70						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CAATTTTCCTGACTCCAAGGA	0.488													27	66					7.92952e-12	8.05636e-12	1	1	0
SLC4A10	57282	broad.mit.edu	37	2	162661004	162661004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:162661004G>A	uc002ubx.3	+	3	360	c.176G>A	c.(175-177)AGA>AAA	p.R59K	SLC4A10_uc010fpa.1_Missense_Mutation_p.R71K|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.R59K|SLC4A10_uc010zcs.1_Missense_Mutation_p.R70K	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	59	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TTGGGAGGAAGAAAAAGCCAT	0.428													8	29					0	0	1	0	0
GRB14	2888	broad.mit.edu	37	2	165404212	165404212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:165404212G>A	uc002ucl.2	-	3	980	c.439C>T	c.(439-441)CAC>TAC	p.H147Y	GRB14_uc010zcv.1_Missense_Mutation_p.H60Y|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	147	Ras-associating.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						GTCCAGCTGTGGTCATCAATG	0.398													7	23					0	0	1	0	0
COBLL1	22837	broad.mit.edu	37	2	165551044	165551044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:165551044G>A	uc010zcw.1	-	15	3297	c.3173C>T	c.(3172-3174)CCA>CTA	p.P1058L	COBLL1_uc002ucp.2_Missense_Mutation_p.P991L|COBLL1_uc002ucq.2_Missense_Mutation_p.P953L|COBLL1_uc010zcx.1_Missense_Mutation_p.P999L|COBLL1_uc002ucn.2_Missense_Mutation_p.P419L|COBLL1_uc002uco.2_Missense_Mutation_p.P722L	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	1029										ovary(2)|pancreas(1)	3						CACAGGTTTTGGAGCTATGGG	0.468													26	58					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165952981	165952981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:165952981C>T	uc002ucx.2	-	24	4781	c.4289G>A	c.(4288-4290)CGA>CAA	p.R1430Q	SCN3A_uc010zcy.1_5'Flank|SCN3A_uc002ucy.2_Missense_Mutation_p.R1381Q|SCN3A_uc002ucz.2_Missense_Mutation_p.R1381Q	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1430						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	ACTTACATCTCGTGAATCAAC	0.289													6	21					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166198926	166198926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:166198926G>A	uc002udc.2	+	15	2799	c.2509G>A	c.(2509-2511)GAA>AAA	p.E837K	SCN2A_uc002udd.2_Missense_Mutation_p.E837K|SCN2A_uc002ude.2_Missense_Mutation_p.E837K	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	837	II.|Helical; Name=S3 of repeat II; (Potential).				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TAGTTTAATGGAACTTGGTTT	0.348													29	71					0	0	1	0	0
TTC21B	79809	broad.mit.edu	37	2	166806199	166806199	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:166806199G>A	uc002udk.2	-	2	190	c.57C>T	c.(55-57)TTC>TTT	p.F19F	TTC21B_uc002udl.2_Silent_p.F19F|uc002udm.1_RNA	NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	19						cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						ATACATGATGGAAATATCTCT	0.343													19	37					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166896101	166896101	+	Silent	SNP	G	A	A	rs145101180	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:166896101G>A	uc010zcz.1	-	14	2406	c.2388C>T	c.(2386-2388)TTC>TTT	p.F796F	SCN1A_uc002udo.3_Silent_p.F676F|SCN1A_uc010fpk.2_Silent_p.F648F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	807	Helical; Name=S2 of repeat II; (By similarity).|II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AGATCCCAGTGAAAACCTAAG	0.318													10	20					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167056272	167056272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:167056272C>T	uc010fpl.2	-	27	5185	c.4844G>A	c.(4843-4845)GGA>GAA	p.G1615E	uc002udp.2_RNA	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1626	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CCCCTTTGCTCCTTTGACTAG	0.498													45	101					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167262984	167262984	+	Silent	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:167262984A>C	uc002udu.1	-	25	4282	c.4155T>G	c.(4153-4155)CTT>CTG	p.L1385L		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1385	Helical; Name=S5 of repeat IV; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						GGAAGATGAGAAGAATGATGT	0.373													15	75					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	167760257	167760257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:167760257G>A	uc002udx.2	+	1	283	c.265G>A	c.(265-267)GAA>AAA	p.E89K	XIRP2_uc010fpn.2_Missense_Mutation_p.E89K|XIRP2_uc010fpo.2_Missense_Mutation_p.E89K|XIRP2_uc010fpp.2_Missense_Mutation_p.E89K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	Error:Variant_position_missing_in_A4UGR9_after_alignment					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAACACCAGGGAATATGGTCG	0.512													21	41					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168106072	168106072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:168106072G>A	uc002udx.2	+	8	8188	c.8170G>A	c.(8170-8172)GAA>AAA	p.E2724K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E2549K|XIRP2_uc010fpq.2_Missense_Mutation_p.E2502K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Missense_Mutation_p.E70K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2549					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TACATTAAATGAAACAGACCA	0.353													15	57					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168106365	168106365	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:168106365A>G	uc002udx.2	+	8	8481	c.8463A>G	c.(8461-8463)AAA>AAG	p.K2821K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.K2646K|XIRP2_uc010fpq.2_Silent_p.K2599K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Silent_p.K167K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2646					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTGAAGAAAAAAATCAGGGAC	0.408													10	31					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	169989179	169989179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:169989179C>T	uc002ues.2	-	77	13846	c.13633G>A	c.(13633-13635)GAA>AAA	p.E4545K		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4545	Cytoplasmic (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCCACATTTTCAGATACAGTC	0.383													18	33					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170090079	170090079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:170090079G>A	uc002ues.2	-	30	5153	c.4940C>T	c.(4939-4941)GCC>GTC	p.A1647V		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1647	LDL-receptor class B 13.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GAGAGTTAGGGCATAGGGGTG	0.488													15	29					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171248994	171248994	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:171248994T>C	uc002ufy.2	+	16	1923	c.1780T>C	c.(1780-1782)TTC>CTC	p.F594L	MYO3B_uc002ufv.2_Missense_Mutation_p.F581L|MYO3B_uc010fqb.1_Missense_Mutation_p.F581L|MYO3B_uc002ufz.2_Missense_Mutation_p.F594L|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	594	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GATTATAGGGTTCACGGACAA	0.393													6	14					0	0	1	0	0
GORASP2	26003	broad.mit.edu	37	2	171804874	171804874	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:171804874C>T	uc002ugk.2	+	2	218	c.78C>T	c.(76-78)TCC>TCT	p.S26S	GORASP2_uc002ugj.2_5'UTR|GORASP2_uc010zdl.1_Silent_p.S38S|GORASP2_uc010zdm.1_5'UTR|GORASP2_uc002ugl.2_5'UTR	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	26	PDZ.					Golgi membrane				breast(1)|central_nervous_system(1)	2						AAGAAAATTCCCCAGGACACA	0.328													11	36					0	0	1	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173782587	173782587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:173782587G>A	uc002uhv.3	+	5	689	c.502G>A	c.(502-504)GGC>AGC	p.G168S	RAPGEF4_uc002uhu.2_Missense_Mutation_p.G168S|RAPGEF4_uc002uhw.3_Missense_Mutation_p.G24S|RAPGEF4_uc010zec.1_Missense_Mutation_p.G15S|RAPGEF4_uc010zed.1_Missense_Mutation_p.G15S|RAPGEF4_uc010zee.1_Missense_Mutation_p.G15S|RAPGEF4_uc010fqo.2_Missense_Mutation_p.G15S	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	168					blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			TATGGAAACGGGCTCTAACAA	0.363													25	62					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179432379	179432379	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179432379T>C	uc010zfg.1	-	275	71000	c.70776A>G	c.(70774-70776)GAA>GAG	p.E23592E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.E17287E|TTN_uc010zfi.1_Silent_p.E17220E|TTN_uc010zfj.1_Silent_p.E17095E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24519							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGACTCTGAATTCATATCTTT	0.398													24	55					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179439256	179439256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179439256C>T	uc010zfg.1	-	275	64123	c.63899G>A	c.(63898-63900)CGA>CAA	p.R21300Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R14995Q|TTN_uc010zfi.1_Missense_Mutation_p.R14928Q|TTN_uc010zfj.1_Missense_Mutation_p.R14803Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22227							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATACCATTTCGTTCTTTTCT	0.418													59	142					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179516677	179516677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179516677C>T	uc010zfg.1	-	159	32235	c.32011G>A	c.(32011-32013)GAA>AAA	p.E10671K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_5'Flank|TTN_uc002umx.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11598							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGGCAACTTCCTCAGGCTCC	0.468													5	16					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179526498	179526498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179526498G>A	uc010zfk.1	-	23	2097	c.1549C>T	c.(1549-1551)CCA>TCA	p.P517S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11762							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAACAGGTGGGACTTCAGGC	0.343													25	63					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179560116	179560116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179560116G>A	uc010zfg.1	-	112	27721	c.27497C>T	c.(27496-27498)CCA>CTA	p.P9166L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P5827L|TTN_uc010fre.1_Missense_Mutation_p.P277L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10093							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACTTTGGCTGGAACTTTTCT	0.338													20	67					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179572409	179572409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179572409C>T	uc010zfg.1	-	97	25377	c.25153G>A	c.(25153-25155)GAA>AAA	p.E8385K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5046K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9312							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCTTTATTTCCCTGCCAGCC	0.498													17	30					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179585312	179585312	+	Missense_Mutation	SNP	G	A	A	rs17452588	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179585312G>A	uc010zfg.1	-	77	19669	c.19445C>T	c.(19444-19446)TCG>TTG	p.S6482L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S3143L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7409							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGAGTTCCCGAAATTTCACA	0.383													6	17					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179589255	179589255	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179589255G>A	uc010zfg.1	-	69	17339	c.17115C>T	c.(17113-17115)GTC>GTT	p.V5705V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V2366V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6632							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCAACAATGACTGCGGGCT	0.468													12	30					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179596678	179596678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179596678C>T	uc010zfg.1	-	55	13416	c.13192G>A	c.(13192-13194)GAA>AAA	p.E4398K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1059K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5325							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCTTAAATTCCTTGGTAAAA	0.443													31	64					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179597410	179597410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179597410C>T	uc010zfg.1	-	53	12870	c.12646G>A	c.(12646-12648)GAT>AAT	p.D4216N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D877N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5143							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCAGAACATCCTTTGAGCCG	0.448													6	16					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179597750	179597750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179597750G>A	uc010zfg.1	-	52	12645	c.12421C>T	c.(12421-12423)CCC>TCC	p.P4141S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P802S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5068							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCCTCATGGGGAGGGAGCCT	0.473													9	26					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179612600	179612600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179612600G>A	uc002unb.2	-	46	14751	c.14527C>T	c.(14527-14529)CCA>TCA	p.P4843S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTCACCTGGATTCTGTTGT	0.428													13	38					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179612918	179612918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179612918G>A	uc002unb.2	-	46	14433	c.14209C>T	c.(14209-14211)CCA>TCA	p.P4737S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGAGGTTGGAAGTAGGGCA	0.363													11	34					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179622510	179622510	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179622510C>T	uc010zfi.1	-	44	10523	c.10299G>A	c.(10297-10299)GGG>GGA	p.G3433G	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133432	NP_597676	Q8WZ42	TITIN_HUMAN	titin isoform novex-1	3517							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGACTGTCTCCCCGTTGTGCA	0.473													35	131					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179631139	179631139	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179631139C>T	uc010zfg.1	-	41	9896	c.9672G>A	c.(9670-9672)AGG>AGA	p.R3224R	TTN_uc010zfh.1_Silent_p.R3178R|TTN_uc010zfi.1_Silent_p.R3178R|TTN_uc010zfj.1_Silent_p.R3178R|TTN_uc002umz.1_5'Flank|TTN_uc002unb.2_Silent_p.R3224R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3224							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACTCCTGTTCCTTCCTGCCA	0.413													38	67					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179640850	179640850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179640850G>A	uc010zfg.1	-	28	5965	c.5741C>T	c.(5740-5742)GCG>GTG	p.A1914V	TTN_uc010zfh.1_Missense_Mutation_p.A1868V|TTN_uc010zfi.1_Missense_Mutation_p.A1868V|TTN_uc010zfj.1_Missense_Mutation_p.A1868V|TTN_uc002unb.2_Missense_Mutation_p.A1914V|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1914							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.A1914V(2)|p.A1868V(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGATTTTCCGCGGTGACCTT	0.458													75	116					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179641767	179641767	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:179641767T>C	uc010zfg.1	-	28	5048	c.4824A>G	c.(4822-4824)GGA>GGG	p.G1608G	TTN_uc010zfh.1_Silent_p.G1562G|TTN_uc010zfi.1_Silent_p.G1562G|TTN_uc010zfj.1_Silent_p.G1562G|TTN_uc002unb.2_Silent_p.G1608G|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1608							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCCCTTGGTTCCTTCAATTC	0.398													19	35					0	0	1	0	0
ZNF385B	151126	broad.mit.edu	37	2	180634320	180634320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:180634320C>T	uc002unn.3	-	3	767	c.163G>A	c.(163-165)GGC>AGC	p.G55S		NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	55	Matrin-type 1.					nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			TGGGATTTGCCGTTGGAATGC	0.567													22	50					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183095762	183095762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:183095762C>T	uc002uos.2	-	6	646	c.562G>A	c.(562-564)GAT>AAT	p.D188N	PDE1A_uc010zfp.1_Missense_Mutation_p.D84N|PDE1A_uc002uoq.1_Missense_Mutation_p.D188N|PDE1A_uc010zfq.1_Missense_Mutation_p.D188N|PDE1A_uc002uor.2_Missense_Mutation_p.D172N|PDE1A_uc002uou.2_Missense_Mutation_p.D154N	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	188					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TTGATAAGATCATATCTGGTA	0.338													13	65					0	0	1	0	0
FAM171B	165215	broad.mit.edu	37	2	187626570	187626570	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:187626570C>T	uc002ups.2	+	8	1613	c.1501C>T	c.(1501-1503)CTA>TTA	p.L501L	FAM171B_uc002upr.1_Silent_p.L468L|FAM171B_uc002upt.2_5'UTR	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	501	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						TAACAACAATCTATCTTCATC	0.388													13	20					0	0	1	0	0
CALCRL	10203	broad.mit.edu	37	2	188210982	188210982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:188210982C>T	uc002upv.3	-	15	1863	c.1315G>A	c.(1315-1317)GAA>AAA	p.E439K	CALCRL_uc010frt.2_Missense_Mutation_p.E439K	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	439	Cytoplasmic (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			TTTAAGTGTTCACTAGGACAG	0.353													6	26					0	0	1	0	0
CALCRL	10203	broad.mit.edu	37	2	188223828	188223828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:188223828G>A	uc002upv.3	-	12	1419	c.871C>T	c.(871-873)CTC>TTC	p.L291F	CALCRL_uc010frt.2_Missense_Mutation_p.L291F	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	291	Helical; Name=5; (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			ATAATGTAGAGGAGATGGGTA	0.313													43	71					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189910627	189910627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:189910627G>A	uc002uqk.2	-	46	3483	c.3208C>T	c.(3208-3210)CGT>TGT	p.R1070C	COL5A2_uc010frx.2_Missense_Mutation_p.R646C	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1070	Cell attachment site (Potential).				axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GGGTCTCCACGATCACCCTAA	0.443													17	52					0	0	1	0	0
ASNSD1	54529	broad.mit.edu	37	2	190531889	190531889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:190531889C>T	uc002uqt.2	+	4	1465	c.1031C>T	c.(1030-1032)CCT>CTT	p.P344L		NM_019048	NP_061921	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	344	Asparagine synthetase.				asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			CGTCATATTCCTTTAGATGAA	0.373													29	77					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192701153	192701153	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:192701153C>T	uc002utb.2	-	2	1104	c.774G>A	c.(772-774)CTG>CTA	p.L258L		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	258	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TCTTTGTCCCCAGCTTGTTCA	0.418													46	182					0	0	1	0	0
SLC39A10	57181	broad.mit.edu	37	2	196545581	196545581	+	Missense_Mutation	SNP	T	C	C	rs148613196	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:196545581T>C	uc002utg.3	+	2	1029	c.815T>C	c.(814-816)GTA>GCA	p.V272A	SLC39A10_uc002uth.3_Missense_Mutation_p.V272A|SLC39A10_uc010zgp.1_Intron	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	272					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			CCTGATCGTGTACATAACCCA	0.423													12	40					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196728872	196728872	+	Splice_Site	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:196728872C>T	uc002utj.3	-	41	7607	c.7506_splice	c.e41+1	p.Q2502_splice		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7						ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CATGACAATACCTGAAACCAG	0.388													13	20					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196728875	196728875	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:196728875G>A	uc002utj.3	-	41	7605	c.7504C>T	c.(7504-7506)CAG>TAG	p.Q2502*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2502	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GACAATACCTGAAACCAGTCA	0.393													12	24					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196774856	196774856	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:196774856C>T	uc002utj.3	-	25	4100	c.3999G>A	c.(3997-3999)GGG>GGA	p.G1333G		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1333	AAA 1 (By similarity).|ATP (Potential).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTCAGTCTTCCCAGTGCCAG	0.418													12	28					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196825381	196825381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:196825381C>T	uc002utj.3	-	18	2595	c.2494G>A	c.(2494-2496)GAA>AAA	p.E832K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	832	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTGAAATCTTCCACCTTTGAT	0.413													27	53					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196825573	196825573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:196825573G>A	uc002utj.3	-	18	2403	c.2302C>T	c.(2302-2304)CGT>TGT	p.R768C		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	768	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCATAAAGACGAAGATAAGGG	0.403													33	61					0	0	1	0	0
AOX1	316	broad.mit.edu	37	2	201503015	201503015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:201503015G>A	uc002uvx.2	+	23	2659	c.2558G>A	c.(2557-2559)GGA>GAA	p.G853E	AOX1_uc010zhf.1_Missense_Mutation_p.G409E|AOX1_uc010fsu.2_Missense_Mutation_p.G219E	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	853					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	CCTTACCTTGGAAAGTACAAA	0.458													26	50					0	0	1	0	0
CLK1	1195	broad.mit.edu	37	2	201718044	201718044	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:201718044C>T	uc002uwe.2	-	13	1621	c.1440G>A	c.(1438-1440)CTG>CTA	p.L480L	CLK1_uc002uwd.2_Silent_p.L303L|CLK1_uc010zhi.1_Silent_p.L522L|CLK1_uc002uwf.2_Silent_p.L254L|CLK1_uc002uwg.2_Silent_p.L329L|CLK1_uc010fsv.2_RNA	NM_004071	NP_004062	P49759	CLK1_HUMAN	CDC-like kinase 1 isoform 1	480					cell proliferation	nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			pancreas(2)	2						TACTTTTCTTCAGAAGGTCAA	0.348													10	32					0	0	1	0	0
CFLAR	8837	broad.mit.edu	37	2	202025549	202025549	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:202025549C>T	uc002uxb.3	+	9	1640	c.1188C>T	c.(1186-1188)CAC>CAT	p.H396H	CFLAR_uc010zhk.1_Silent_p.H300H|CFLAR_uc002uxc.3_Silent_p.H361H|CFLAR_uc010zhl.1_Silent_p.H300H|CFLAR_uc010fsw.1_RNA|CFLAR_uc002uxd.3_Silent_p.H396H|CFLAR_uc002uxf.2_Silent_p.H396H|CFLAR_uc010fsy.2_RNA|CFLAR_uc010fsx.2_Intron|CFLAR_uc010zhm.1_Silent_p.H300H|CFLAR_uc010fsz.2_Silent_p.H151H|CFLAR_uc002uxg.2_Silent_p.H151H	NM_003879	NP_003870	O15519	CFLAR_HUMAN	CASP8 and FADD-like apoptosis regulator isoform	396	Interaction with caspase-8.|Interaction with caspase-3.|Interaction with TRAF1 and TRAF2.|Not proteolytically processed and involved in apoptosis inhibition.|Interaction with caspase-8 subunits p18 and p10.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis		cysteine-type endopeptidase activity|protein binding				0						GCACAGTTCACCGAGAAGCTG	0.582													10	30					0	0	1	0	0
FZD7	8324	broad.mit.edu	37	2	202900493	202900493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:202900493G>A	uc002uyw.1	+	1	1184	c.1123G>A	c.(1123-1125)GAG>AAG	p.E375K		NM_003507	NP_003498	O75084	FZD7_HUMAN	frizzled 7 precursor	375	Cytoplasmic (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(2)|ovary(1)|breast(1)	4						CGAGGCCATCGAGGCCAACTC	0.637											OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	60					0	0	1	0	0
CCNYL1	151195	broad.mit.edu	37	2	208611847	208611847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:208611847C>T	uc002vci.2	+	6	920	c.563C>T	c.(562-564)GCC>GTC	p.A188V	CCNYL1_uc002vch.2_Missense_Mutation_p.A169V	NM_001142300	NP_001135772	Q8N7R7	CCYL1_HUMAN	cyclin Y-like 1 isoform 1	239	Cyclin N-terminal.				regulation of cyclin-dependent protein kinase activity		protein kinase binding				0				LUSC - Lung squamous cell carcinoma(261;0.0731)|Epithelial(149;0.139)|Lung(261;0.14)		GTTCTGGGAGCCATTCTTCTT	0.433													20	40					0	0	1	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209203253	209203253	+	Missense_Mutation	SNP	C	T	T	rs150593024	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:209203253C>T	uc002vcz.2	+	29	4791	c.4633C>T	c.(4633-4635)CCA>TCA	p.P1545S		NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1545					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						GGATGCATCTCCACGGAATAT	0.313													6	19					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210561449	210561449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:210561449G>A	uc002vde.1	+	8	4612	c.4364G>A	c.(4363-4365)AGA>AAA	p.R1455K	MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.R1451K	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1455	Calmodulin-binding (Potential).				central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	ACAGTCTCCAGAGATGAAGTG	0.343													10	28					0	0	1	0	0
ATIC	471	broad.mit.edu	37	2	216197147	216197147	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:216197147T>C	uc002vex.3	+	8	905	c.731T>C	c.(730-732)TTG>TCG	p.L244S	ATIC_uc010zjo.1_Missense_Mutation_p.L185S|ATIC_uc002vey.3_Missense_Mutation_p.L243S	NM_004044	NP_004035	P31939	PUR9_HUMAN	5-aminoimidazole-4-carboxamide ribonucleotide	244					IMP biosynthetic process|purine base metabolic process	cytosol	IMP cyclohydrolase activity|phosphoribosylaminoimidazolecarboxamide formyltransferase activity|protein homodimerization activity		ATIC/ALK(24)	haematopoietic_and_lymphoid_tissue(22)|ovary(2)|lung(2)|soft_tissue(2)|skin(1)	29		Renal(323;0.229)		Epithelial(149;2.02e-06)|all cancers(144;0.000316)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.0097)	Tetrahydrofolic acid(DB00116)	TGCGATGCTTTGAACGCCTGG	0.448			T	ALK	ALCL								31	44					0	0	1	0	0
IGFBP5	3488	broad.mit.edu	37	2	217543705	217543705	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:217543705G>A	uc002vgj.3	-	2	1209	c.435C>T	c.(433-435)TCC>TCT	p.S145S		NM_000599	NP_000590	P24593	IBP5_HUMAN	insulin-like growth factor binding protein 5	145					negative regulation of insulin-like growth factor receptor signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|negative regulation of translation|signal transduction		insulin-like growth factor I binding				0		Renal(323;0.0822)		Epithelial(149;2.1e-06)|all cancers(144;0.000165)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTTCAGCTCGGAGATGCGGG	0.602													23	63					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218713465	218713465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:218713465G>A	uc002vgt.2	-	17	1798	c.1400C>T	c.(1399-1401)CCA>CTA	p.P467L	TNS1_uc002vgr.2_Missense_Mutation_p.P467L|TNS1_uc002vgs.2_Missense_Mutation_p.P467L|TNS1_uc010zjv.1_Missense_Mutation_p.P467L|TNS1_uc010fvj.1_Missense_Mutation_p.P535L|TNS1_uc010fvk.1_Missense_Mutation_p.P592L|TNS1_uc010fvi.1_Missense_Mutation_p.P154L	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	467						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		GCCCCCTGCTGGGCGGGACCT	0.642													20	78					0	0	1	0	0
VIL1	7429	broad.mit.edu	37	2	219299275	219299275	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:219299275G>A	uc002via.2	+	14	1592	c.1527G>A	c.(1525-1527)TTG>TTA	p.L509L	VIL1_uc010zke.1_Silent_p.L198L|VIL1_uc002vib.2_Silent_p.L509L	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	509	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTAACAACTTGGAGACCGGGC	0.577													25	55					0	0	1	0	0
TUBA4A	7277	broad.mit.edu	37	2	220116755	220116755	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:220116755A>C	uc002vkt.1	-	2	259	c.201T>G	c.(199-201)TTT>TTG	p.F67L	TUBA4A_uc010zkz.1_Missense_Mutation_p.F52L|TUBA4B_uc002vku.2_5'Flank|TUBA4B_uc002vkv.1_5'Flank	NM_006000	NP_005991	P68366	TBA4A_HUMAN	tubulin, alpha 4a	67					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|platelet activation|platelet degranulation|protein polymerization	cytosol|extracellular region|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)	3		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCAGATCCACAAAAACTGCCC	0.532													18	32					0	0	1	0	0
DNAJB2	3300	broad.mit.edu	37	2	220146473	220146473	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:220146473G>T	uc002vkx.1	+	4	446	c.209G>T	c.(208-210)CGG>CTG	p.R70L	DNAJB2_uc010zla.1_Missense_Mutation_p.R70L|DNAJB2_uc002vkw.1_Missense_Mutation_p.R70L|DNAJB2_uc002vky.2_5'Flank|DNAJB2_uc010zlb.1_5'Flank	NM_006736	NP_006727	P25686	DNJB2_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 2	70	J.				ER-associated protein catabolic process|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of inclusion body assembly|negative regulation of protein deubiquitination|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein folding|response to unfolded protein	inclusion body	heat shock protein binding|Hsp70 protein binding|polyubiquitin binding|proteasome binding|protein binding|unfolded protein binding				0		Renal(207;0.0474)		Epithelial(149;1.97e-06)|all cancers(144;0.00028)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGCTATGGCCGGGAAGGGCTG	0.602													18	56					1.99824e-07	2.01652e-07	1	1	0
ACCN4	55515	broad.mit.edu	37	2	220396587	220396587	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:220396587C>T	uc002vma.2	+	2	1085	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I	ACCN4_uc010fwi.1_Silent_p.I357I|ACCN4_uc010fwj.1_Silent_p.I357I|ACCN4_uc002vly.1_Silent_p.I357I|ACCN4_uc002vlz.2_Silent_p.I357I|ACCN4_uc002vmb.2_Silent_p.I11I	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	357	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		TGCTGGACATCCAGCAGGAGG	0.662													47	90					0	0	1	0	0
TMEM198	130612	broad.mit.edu	37	2	220409514	220409514	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:220409514G>A	uc002vme.2	+	3	650	c.65G>A	c.(64-66)TGG>TAG	p.W22*	CHPF_uc010zlh.1_5'Flank|CHPF_uc002vmc.3_5'Flank|CHPF_uc002vmd.3_5'Flank|TMEM198_uc002vmf.2_Nonsense_Mutation_p.W22*	NM_001005209	NP_001005209	Q66K66	TM198_HUMAN	transmembrane protein 198	22						integral to membrane				ovary(1)	1		Renal(207;0.0376)		Epithelial(149;6.49e-08)|all cancers(144;6.45e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		GATGCCTTCTGGGGTGCACCT	0.592													23	45					0	0	1	0	0
INHA	3623	broad.mit.edu	37	2	220440116	220440116	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:220440116G>A	uc002vmk.1	+	2	1113	c.969G>A	c.(967-969)GGG>GGA	p.G323G		NM_002191	NP_002182	P05111	INHA_HUMAN	inhibin alpha subunit precursor	323					cell cycle arrest|cell surface receptor linked signaling pathway|cell-cell signaling|erythrocyte differentiation|hemoglobin biosynthetic process|induction of apoptosis|negative regulation of B cell differentiation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|regulation of cell proliferation|response to external stimulus|skeletal system development	inhibin A complex|inhibin-betaglycan-ActRII complex	cytokine activity|growth factor activity|hormone activity|signal transducer activity			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;4.58e-07)|all cancers(144;4.31e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		TGCTGCCAGGGGCCCAGCCCT	0.622													65	133					0	0	1	0	0
DOCK10	55619	broad.mit.edu	37	2	225681370	225681370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:225681370G>A	uc010fwz.1	-	30	3567	c.3328C>T	c.(3328-3330)CCT>TCT	p.P1110S	DOCK10_uc002vob.2_Missense_Mutation_p.P1104S|DOCK10_uc002voc.2_5'UTR	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1110							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		AGACACAAAGGGATAAAGTGT	0.363													6	14					0	0	1	0	0
MFF	56947	broad.mit.edu	37	2	228195367	228195367	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:228195367C>G	uc002vos.2	+	4	482	c.64C>G	c.(64-66)CCC>GCC	p.P22A	MFF_uc002vot.2_5'UTR|MFF_uc002vou.2_Missense_Mutation_p.P22A|MFF_uc002vov.2_5'UTR|MFF_uc002vow.2_5'UTR|MFF_uc002vox.2_5'UTR|MFF_uc002voy.2_Missense_Mutation_p.P22A|MFF_uc002voz.2_5'UTR	NM_020194	NP_064579	Q9GZY8	MFF_HUMAN	mitochondrial fission factor	22	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane				large_intestine(1)	1						ATTTCCTTCTCCCACTGCTGC	0.438													8	24					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881246	228881246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:228881246C>T	uc002vpq.2	-	7	4371	c.4324G>A	c.(4324-4326)GAA>AAA	p.E1442K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1442K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E1442K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1442						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGTTCAGGTTCCCCAGCACAG	0.498													25	55					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881890	228881890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:228881890G>A	uc002vpq.2	-	7	3727	c.3680C>T	c.(3679-3681)TCT>TTT	p.S1227F	SPHKAP_uc002vpp.2_Missense_Mutation_p.S1227F|SPHKAP_uc010zlx.1_Missense_Mutation_p.S1227F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1227						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGATCGCAGAGAAGGAGACAG	0.557													38	62					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883860	228883860	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:228883860G>A	uc002vpq.2	-	7	1757	c.1710C>T	c.(1708-1710)GTC>GTT	p.V570V	SPHKAP_uc002vpp.2_Silent_p.V570V|SPHKAP_uc010zlx.1_Silent_p.V570V	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	570						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CCAGACCACAGACAGCCACGG	0.552													23	70					0	0	1	0	0
UGT1A3	54659	broad.mit.edu	37	2	234637841	234637841	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:234637841G>A	uc002vuy.2	+	1	69	c.69G>A	c.(67-69)CAG>CAA	p.Q23Q	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Silent_p.Q23Q	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	23					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TCAGTGTCCAGCCCTGGGCTG	0.627													15	29					0	0	1	0	0
UGT1A1	54658	broad.mit.edu	37	2	234669540	234669540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:234669540C>T	uc002vvb.2	+	1	622	c.607C>T	c.(607-609)CAC>TAC	p.H203Y	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron|UGT1A9_uc002vva.2_Intron|UGT1A1_uc010znc.1_Missense_Mutation_p.H203Y	NM_000463	NP_000454	P22309	UD11_HUMAN	UDP glycosyltransferase 1 family, polypeptide A1	203					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			central_nervous_system(1)|skin(1)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	TCATTCAGATCACATGACCTT	0.522													38	147					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234851238	234851238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:234851238G>A	uc002vvh.2	+	6	585	c.545G>A	c.(544-546)GGA>GAA	p.G182E	TRPM8_uc010fyj.2_5'UTR|TRPM8_uc002vvi.3_Missense_Mutation_p.G132E|TRPM8_uc002vvj.3_Missense_Mutation_p.G105E	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	182	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	ATTCTCACGGGAGGCACCCAT	0.483													27	87					0	0	1	0	0
AGAP1	116987	broad.mit.edu	37	2	236957847	236957847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:236957847C>T	uc002vvs.2	+	16	2631	c.2036C>T	c.(2035-2037)TCC>TTC	p.S679F	AGAP1_uc002vvt.2_Missense_Mutation_p.S626F	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	679	Arf-GAP.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						GTGATGTCATCCATCGGGAAC	0.567													29	72					0	0	1	0	0
CXCR7	57007	broad.mit.edu	37	2	237489138	237489138	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:237489138G>A	uc010fyq.2	+	3	260	c.30G>A	c.(28-30)GAG>GAA	p.E10E	CXCR7_uc002vwd.2_Silent_p.E10E	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	10	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		ACTACTCAGAGCCAGGGAACT	0.507													17	44					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238243470	238243470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:238243470C>T	uc002vwl.2	-	41	9313	c.9028G>A	c.(9028-9030)GAG>AAG	p.E3010K	COL6A3_uc002vwo.2_Missense_Mutation_p.E2804K|COL6A3_uc010znj.1_Missense_Mutation_p.E2403K|COL6A3_uc002vwj.2_Missense_Mutation_p.E391K	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	3010	Fibronectin type-III.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCAGCCCTCTCCCAGTGGAGT	0.498													26	51					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238285478	238285478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:238285478C>T	uc002vwl.2	-	7	3292	c.3007G>A	c.(3007-3009)GGA>AGA	p.G1003R	COL6A3_uc002vwo.2_Missense_Mutation_p.G797R|COL6A3_uc010znj.1_Missense_Mutation_p.G396R|COL6A3_uc002vwq.2_Missense_Mutation_p.G797R|COL6A3_uc002vwr.2_Missense_Mutation_p.G596R|COL6A3_uc010znk.1_Missense_Mutation_p.G803R	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1003	Nonhelical region.|VWFA 5.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TGAAGATCTCCAATCTTGGGA	0.498													52	152					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241685220	241685220	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:241685220G>A	uc002vzy.2	-	29	3152	c.3006C>T	c.(3004-3006)TTC>TTT	p.F1002F	KIF1A_uc010fzk.2_Silent_p.F1103F|KIF1A_uc002vzz.1_Silent_p.F1103F	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1002					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CTGTCACACGGAAGGTGAAGG	0.627													5	15					0	0	1	0	0
THAP4	51078	broad.mit.edu	37	2	242524126	242524126	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:242524126G>A	uc002wbt.2	-	6	1852	c.1629C>T	c.(1627-1629)TTC>TTT	p.F543F	THAP4_uc002wbs.2_Silent_p.F131F	NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	543							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		AATTCAGCCTGAACTTCCGGG	0.488													77	174					0	0	1	0	0
C2orf85	285093	broad.mit.edu	37	2	242814397	242814397	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr2:242814397C>T	uc010fzu.1	+	2	713	c.690C>T	c.(688-690)CTC>CTT	p.L230L		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	230						integral to membrane				ovary(1)	1						GGGCCTCTCTCCCTGTGACTG	0.662													10	32					0	0	1	0	0
SIRPD	128646	broad.mit.edu	37	20	1532446	1532446	+	Silent	SNP	G	A	A	rs111431969		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:1532446G>A	uc002wfi.2	-	2	356	c.312C>T	c.(310-312)ATC>ATT	p.I104I		NM_178460	NP_848555	Q9H106	SIRPD_HUMAN	signal-regulatory protein delta precursor	104	Ig-like V-type.					extracellular region				ovary(1)|kidney(1)|skin(1)	3						AGATTTCACGGATGCGGGTGG	0.458													40	62					0	0	1	0	0
SIRPG	55423	broad.mit.edu	37	20	1629967	1629967	+	Missense_Mutation	SNP	G	A	A	rs143978848	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:1629967G>A	uc002wfm.1	-	2	226	c.161C>T	c.(160-162)ACT>ATT	p.T54I	SIRPG_uc002wfn.1_Missense_Mutation_p.T54I|SIRPG_uc002wfo.1_Missense_Mutation_p.T54I	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	54	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GGAGGTCACAGTGCAGTGCAG	0.542													29	40					0	0	1	0	0
IDH3B	3420	broad.mit.edu	37	20	2644629	2644629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:2644629G>A	uc002wgp.2	-	2	68	c.59C>T	c.(58-60)CCT>CTT	p.P20L	IDH3B_uc002wgq.2_Missense_Mutation_p.P20L|IDH3B_uc002wgr.2_5'UTR|IDH3B_uc010zpz.1_Missense_Mutation_p.P20L	NM_006899	NP_008830	O43837	IDH3B_HUMAN	isocitrate dehydrogenase 3, beta subunit isoform	20					isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	electron carrier activity|isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0					NADH(DB00157)	CCATGCCCCAGGGTTCCCGGC	0.617													8	41					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8713986	8713986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:8713986C>T	uc002wnb.2	+	19	1993	c.1990C>T	c.(1990-1992)CCA>TCA	p.P664S	PLCB1_uc010zrb.1_Missense_Mutation_p.P563S|PLCB1_uc002wna.2_Missense_Mutation_p.P664S|PLCB1_uc002wnc.1_Missense_Mutation_p.P563S|PLCB1_uc002wnd.1_Missense_Mutation_p.P241S	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	664	C2.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GCATTTTGATCCATTTACTGA	0.413													13	41					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9391683	9391683	+	Splice_Site	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:9391683G>A	uc002wnf.2	+	23	2100	c.1964_splice	c.e23-1	p.D655_splice	PLCB4_uc010gbw.1_Splice_Site_p.D655_splice|PLCB4_uc010gbx.2_Splice_Site_p.D667_splice|PLCB4_uc002wne.2_Splice_Site_p.D655_splice|PLCB4_uc002wnh.2_Splice_Site_p.D502_splice	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b						intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TCTCTTGACAGATTTAGCGAT	0.378													9	49					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9400458	9400458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:9400458C>T	uc002wnf.2	+	24	2156	c.2020C>T	c.(2020-2022)CTT>TTT	p.L674F	PLCB4_uc010gbw.1_Missense_Mutation_p.L674F|PLCB4_uc010gbx.2_Missense_Mutation_p.L686F|PLCB4_uc002wne.2_Missense_Mutation_p.L674F|PLCB4_uc002wnh.2_Missense_Mutation_p.L521F	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	674	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TACCAGGTACCTTCTCAAACC	0.428													30	86					0	0	1	0	0
SEL1L2	80343	broad.mit.edu	37	20	13830908	13830908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:13830908G>A	uc010gcf.2	-	19	1958	c.1876C>T	c.(1876-1878)CAC>TAC	p.H626Y	SEL1L2_uc002woq.3_Missense_Mutation_p.H487Y|SEL1L2_uc010zrl.1_Missense_Mutation_p.H513Y|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	626	Extracellular (Potential).					integral to membrane	binding			ovary(2)	2						ACAGGTATGTGGGCATCTGGA	0.463													20	45					0	0	1	0	0
MACROD2	140733	broad.mit.edu	37	20	14066288	14066288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:14066288C>T	uc002wou.2	+	3	449	c.185C>T	c.(184-186)TCC>TTC	p.S62F	MACROD2_uc002wot.2_Missense_Mutation_p.S62F	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	62	Macro.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				CAGGAAACATCCCAGGTGAAG	0.303													5	10					0	0	1	0	0
MACROD2	140733	broad.mit.edu	37	20	15480430	15480430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:15480430G>A	uc002wou.2	+	8	847	c.583G>A	c.(583-585)GAG>AAG	p.E195K	MACROD2_uc002wot.2_Missense_Mutation_p.E195K|MACROD2_uc002woz.2_5'UTR	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	195	Macro.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				CTTTCCCAACGAGCCTGCTGC	0.443													8	38					0	0	1	0	0
C20orf12	55184	broad.mit.edu	37	20	18377153	18377153	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:18377153A>G	uc010zsa.1	-	15	1840	c.1631T>C	c.(1630-1632)GTT>GCT	p.V544A	C20orf12_uc010zrz.1_Missense_Mutation_p.V63A|C20orf12_uc002wqp.3_Missense_Mutation_p.V235A|C20orf12_uc002wqr.3_RNA|C20orf12_uc002wqs.3_Missense_Mutation_p.V411A|C20orf12_uc002wqq.3_Missense_Mutation_p.V525A	NM_001099407	NP_001092877	Q9NVP4	CT012_HUMAN	hypothetical protein LOC55184	352						intracellular	zinc ion binding			ovary(1)	1		Myeloproliferative disorder(85;0.0122)				TCTGATGCTAACTTCACAACC	0.378													25	65					0	0	1	0	0
CRNKL1	51340	broad.mit.edu	37	20	20028529	20028529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:20028529C>T	uc002wrs.2	-	6	1017	c.985G>A	c.(985-987)GCC>ACC	p.A329T	CRNKL1_uc002wrt.1_Missense_Mutation_p.A317T	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	329	HAT 4.				spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						ACCTGCCGGGCACCGGCAACG	0.502													16	37					0	0	1	0	0
CSTL1	128817	broad.mit.edu	37	20	23420962	23420962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:23420962G>A	uc002wte.2	+	2	304	c.58G>A	c.(58-60)GCC>ACC	p.A20T	CSTL1_uc010zsu.1_RNA|CSTL1_uc010zsv.1_RNA	NM_138283	NP_612140	Q9H114	CST1L_HUMAN	cystatin-like 1 precursor	20						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0993)|Lung NSC(19;0.235)					GGTCCTGTCAGCCAAGCTGGG	0.512													20	35					0	0	1	0	0
CSTL1	128817	broad.mit.edu	37	20	23421109	23421109	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:23421109C>T	uc002wte.2	+	2	451	c.205C>T	c.(205-207)CGA>TGA	p.R69*	CSTL1_uc010zsu.1_RNA|CSTL1_uc010zsv.1_RNA	NM_138283	NP_612140	Q9H114	CST1L_HUMAN	cystatin-like 1 precursor	69						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0993)|Lung NSC(19;0.235)					GAGGCTAATTCGAAGTCAGAT	0.463													30	41					0	0	1	0	0
C20orf191	149934	broad.mit.edu	37	20	26084174	26084174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:26084174C>T	uc002wvj.3	-	2	297	c.242G>A	c.(241-243)CGA>CAA	p.R81Q		NR_003678				SubName: Full=Putative uncharacterized protein ENSP00000323172;												0						TGCAATTTCTCGATCTACACG	0.333													7	23					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:29625941A>T	uc010ztl.1	+	2	127	c.95A>T	c.(94-96)GAT>GTT	p.D32V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGCATTCAGATGCAATTGGA	0.333													6	50					0	0	1	0	0
MYL9	10398	broad.mit.edu	37	20	35176481	35176481	+	Silent	SNP	C	T	T	rs146334996		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:35176481C>T	uc002xfl.1	+	3	325	c.231C>T	c.(229-231)GCC>GCT	p.A77A	uc002xfk.3_Intron|MYL9_uc002xfm.1_Intron	NM_006097	NP_006088	P24844	MYL9_HUMAN	myosin regulatory light chain 9 isoform a	77					axon guidance|muscle contraction|regulation of muscle contraction	cytosol|muscle myosin complex	calcium ion binding|structural constituent of muscle				0	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				TGAGCGAGGCCCCGGGGCCCA	0.617													8	26					0	0	1	0	0
DSN1	79980	broad.mit.edu	37	20	35396435	35396435	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:35396435C>T	uc010gfr.2	-	4	739	c.366G>A	c.(364-366)CGG>CGA	p.R122R	DSN1_uc002xfz.2_Silent_p.R122R|DSN1_uc002xfy.3_5'UTR|DSN1_uc002xga.2_Silent_p.R122R|DSN1_uc010zvs.1_Silent_p.R15R|DSN1_uc002xgc.2_Silent_p.R106R|DSN1_uc002xgb.2_Silent_p.R106R	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	122					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				CACTGATAGACCGGCTGAGCT	0.393													26	43					0	0	1	0	0
C20orf117	140710	broad.mit.edu	37	20	35443545	35443545	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:35443545A>G	uc002xgd.1	-	5	1913	c.1586T>C	c.(1585-1587)CTT>CCT	p.L529P	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	529											0		Myeloproliferative disorder(115;0.00874)				GTCTGAGCCAAGGTCTTTTGC	0.393													49	127					0	0	1	0	0
RALGAPB	57148	broad.mit.edu	37	20	37154084	37154084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:37154084G>A	uc002xiw.2	+	12	2082	c.1825G>A	c.(1825-1827)GAA>AAA	p.E609K	RALGAPB_uc002xix.2_Missense_Mutation_p.E609K|RALGAPB_uc002xiy.1_Missense_Mutation_p.E609K|RALGAPB_uc002xiz.2_Missense_Mutation_p.E387K|RALGAPB_uc002xja.1_Missense_Mutation_p.E336K	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	609					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						AAATCCAACAGAATTGCGAAG	0.333													23	68					0	0	1	0	0
LPIN3	64900	broad.mit.edu	37	20	39980535	39980535	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:39980535A>T	uc002xjx.2	+	8	1268	c.1177A>T	c.(1177-1179)AAT>TAT	p.N393Y	LPIN3_uc010ggh.2_Missense_Mutation_p.N394Y|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	393					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				GGACTCTGAGAATGCAGCGCT	0.582													19	48					0	0	1	0	0
LPIN3	64900	broad.mit.edu	37	20	39981294	39981294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:39981294C>T	uc002xjx.2	+	10	1503	c.1412C>T	c.(1411-1413)CCC>CTC	p.P471L	LPIN3_uc010ggh.2_Missense_Mutation_p.P472L|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	471					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				ACCAAAAACCCCGGACTTTTG	0.542													66	195					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40727112	40727112	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:40727112G>A	uc002xkg.2	-	27	3979	c.3795C>T	c.(3793-3795)TTC>TTT	p.F1265F	PTPRT_uc010ggj.2_Silent_p.F1284F|PTPRT_uc010ggi.2_Silent_p.F468F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1265	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGTTGTAATCGAACACCAGCC	0.592													23	48					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41408889	41408889	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:41408889C>T	uc002xkg.2	-	4	721	c.537G>A	c.(535-537)GTG>GTA	p.V179V	PTPRT_uc010ggj.2_Silent_p.V179V	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	179	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGACCTCGTCCACGGCGATGT	0.522													26	52					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41419868	41419868	+	Silent	SNP	G	A	A	rs140340339		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:41419868G>A	uc002xkg.2	-	3	637	c.453C>T	c.(451-453)CTC>CTT	p.L151L	PTPRT_uc010ggj.2_Silent_p.L151L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	151	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity	p.L151L(1)		skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGCTGATGGCGAGCTCTGCCT	0.488													32	89					0	0	1	0	0
SEMG1	6406	broad.mit.edu	37	20	43837241	43837241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:43837241G>A	uc002xni.2	+	2	1360	c.1303G>A	c.(1303-1305)GAT>AAT	p.D435N	SEMG1_uc002xnj.2_Missense_Mutation_p.D375N|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.D375N	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	435	42 AA repeat 3.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				TGGGGGATTGGATATTGTAAT	0.403													19	52					0	0	1	0	0
SEMG2	6407	broad.mit.edu	37	20	43850574	43850574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:43850574G>A	uc010ggz.2	+	2	358	c.301G>A	c.(301-303)GGT>AGT	p.G101S	SEMG2_uc002xnk.2_Missense_Mutation_p.G101S|SEMG2_uc002xnl.2_Missense_Mutation_p.G101S	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	101	Repeat-rich region.|3-1.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				ACAACACCTAGGTGGAAGTCA	0.373													16	44					0	0	1	0	0
WFDC10B	280664	broad.mit.edu	37	20	44314548	44314548	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:44314548C>T	uc002xpb.2	-	3	315	c.84G>A	c.(82-84)AGG>AGA	p.R28R	WFDC10B_uc002xpc.2_Intron	NM_172006	NP_742003	Q8IUB3	WF10B_HUMAN	WAP four-disulfide core domain 10B isoform a	28	WAP.					extracellular region	peptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TACTCTGCATCCTCATCTTGT	0.572													5	19					0	0	1	0	0
MMP9	4318	broad.mit.edu	37	20	44639169	44639169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:44639169C>T	uc002xqz.2	+	3	438	c.419C>T	c.(418-420)GCC>GTC	p.A140V		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	140					collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	ATTGACGACGCCTTTGCCCGC	0.617													17	44					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44664487	44664487	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:44664487C>T	uc010zxl.1	+	4	496	c.420C>T	c.(418-420)TTC>TTT	p.F140F	SLC12A5_uc002xra.2_Silent_p.F117F|SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Silent_p.F117F	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	140	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TCATCCTCTTCCTGCGGCTCA	0.612													11	32					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354929	45354929	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:45354929C>T	uc002xsl.2	+	2	1351	c.1254C>T	c.(1252-1254)GTC>GTT	p.V418V		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	418	Helical; Name=10; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GCCTGATGGTCTTTGTCAGTG	0.632													10	28					0	0	1	0	0
NCOA3	8202	broad.mit.edu	37	20	46264370	46264370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:46264370C>T	uc002xtk.2	+	11	1622	c.1417C>T	c.(1417-1419)CTT>TTT	p.L473F	NCOA3_uc010ght.1_Missense_Mutation_p.L483F|NCOA3_uc002xtl.2_Missense_Mutation_p.L473F|NCOA3_uc002xtm.2_Missense_Mutation_p.L473F|NCOA3_uc002xtn.2_Missense_Mutation_p.L473F|NCOA3_uc010zyc.1_Missense_Mutation_p.L268F	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	473					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						GAGTCCTGGTCTTGCCCCAAA	0.493													20	47					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49204371	49204371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:49204371C>T	uc002xvm.2	-	21	3026	c.2708G>A	c.(2707-2709)CGG>CAG	p.R903Q	FAM65C_uc010zyt.1_Missense_Mutation_p.R907Q	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	903										ovary(2)	2						GGCTGCCGCCCGCACGGCCTC	0.597											OREG0026030	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	37					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49218800	49218800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:49218800G>A	uc002xvm.2	-	13	1774	c.1456C>T	c.(1456-1458)CAC>TAC	p.H486Y	FAM65C_uc010zyt.1_Missense_Mutation_p.H490Y|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.H486Y	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	486										ovary(2)	2						GTGCCGCTGTGGAACAGGGAG	0.682													9	22					0	0	1	0	0
BCAS1	8537	broad.mit.edu	37	20	52645374	52645374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:52645374G>A	uc002xws.2	-	4	618	c.280C>T	c.(280-282)CGT>TGT	p.R94C	BCAS1_uc010zzb.1_5'UTR|BCAS1_uc010gim.2_5'UTR|BCAS1_uc002xwt.2_Missense_Mutation_p.R94C|BCAS1_uc010gil.1_Missense_Mutation_p.R94C|BCAS1_uc010zzc.1_5'UTR	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	94						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			AAGAAAAAACGAGATTTAGCA	0.517													12	28					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61512356	61512356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:61512356G>A	uc002ydr.1	-	16	5216	c.4952C>T	c.(4951-4953)TCG>TTG	p.S1651L	DIDO1_uc002yds.1_Missense_Mutation_p.S1651L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1651					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					AGGCCTGGCCGAGCTGTCTCC	0.736													9	13					0	0	1	0	0
SLC17A9	63910	broad.mit.edu	37	20	61595008	61595008	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:61595008C>T	uc002yea.3	+	7	982	c.798C>T	c.(796-798)TTC>TTT	p.F266F	SLC17A9_uc002ydz.3_Silent_p.F260F|SLC17A9_uc011aap.1_Silent_p.F286F	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	266					exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						CCACCTTCTTCGAGGAGACCT	0.662													4	8					0	0	1	0	0
EEF1A2	1917	broad.mit.edu	37	20	62127295	62127295	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:62127295A>G	uc002yfd.1	-	2	339	c.238T>C	c.(238-240)TTC>CTC	p.F80L	EEF1A2_uc002yfe.1_Missense_Mutation_p.F80L|EEF1A2_uc010gkg.1_Missense_Mutation_p.F80L	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	80						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			GTGGTCTCGAACTTCCAGAGG	0.577											OREG0026129	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	92					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62194489	62194489	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:62194489G>A	uc002yfm.2	-	9	6578	c.5686C>T	c.(5686-5688)CTG>TTG	p.L1896L	PRIC285_uc002yfl.1_Silent_p.L1327L	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1896					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CTCGGTACCAGGAAGCCGTGC	0.692													4	4					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62197209	62197209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:62197209G>A	uc002yfm.2	-	9	3858	c.2966C>T	c.(2965-2967)GCG>GTG	p.A989V	PRIC285_uc002yfl.1_Missense_Mutation_p.A420V	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	989	Ala-rich.				cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CACCACAGCCGCCTGCTCCTC	0.701													4	16					0	0	1	0	0
GMEB2	26205	broad.mit.edu	37	20	62221454	62221454	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:62221454G>C	uc002yfp.1	-	9	2060	c.1581C>G	c.(1579-1581)CAC>CAG	p.H527Q	GMEB2_uc002yfo.1_Missense_Mutation_p.H449Q|GMEB2_uc002yfq.1_Missense_Mutation_p.H527Q	NM_012384	NP_036516	Q9UKD1	GMEB2_HUMAN	glucocorticoid modulatory element binding	527					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|metal ion binding				0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;4.79e-09)|all cancers(9;2.76e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.0114)			ACTTCCGCTCGTGGTCCTCTG	0.711													8	30					0	0	1	0	0
ZNF512B	57473	broad.mit.edu	37	20	62598119	62598119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr20:62598119G>A	uc002yhl.1	-	5	463	c.409C>T	c.(409-411)CGC>TGC	p.R137C		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	137					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					AAGGCCAGGCGATCTGAGATG	0.652													15	24					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10971338	10971338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:10971338G>A	uc002yip.1	-	5	387	c.19C>T	c.(19-21)CCG>TCG	p.P7S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P7S|TPTE_uc002yir.1_Missense_Mutation_p.P7S|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	7					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGGTCAGTCGGATCAGGACTA	0.373													10	53					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14414934	14414934	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:14414934G>A	uc002yiy.3	+	2		c.371G>A			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						CAACTCTGATGAAGGTAAATG	0.393													4	32					0	0	1	0	0
BACH1	571	broad.mit.edu	37	21	30698572	30698572	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:30698572A>C	uc002ynj.2	+	3	542	c.427A>C	c.(427-429)AAA>CAA	p.K143Q	BACH1_uc002ynk.2_Missense_Mutation_p.K143Q|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	143						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						ATGCCCAAGAAAAAAATGCTT	0.373													15	29					0	0	1	0	0
GRIK1	2897	broad.mit.edu	37	21	31045476	31045476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:31045476G>A	uc002yno.1	-	4	1017	c.553C>T	c.(553-555)CGT>TGT	p.R185C	GRIK1_uc002ynn.2_Missense_Mutation_p.R185C|GRIK1_uc011acs.1_Missense_Mutation_p.R185C|GRIK1_uc011act.1_Missense_Mutation_p.R129C|GRIK1_uc010glq.1_Missense_Mutation_p.R43C|GRIK1_uc002ynr.2_Missense_Mutation_p.R185C	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	185	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TCTTGTAGACGAATTAGACCT	0.393													17	37					0	0	1	0	0
SYNJ1	8867	broad.mit.edu	37	21	34003737	34003737	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:34003737G>A	uc002yqh.2	-	32	4407	c.4407C>T	c.(4405-4407)TTC>TTT	p.F1469F	SYNJ1_uc011ads.1_3'UTR|SYNJ1_uc002yqf.2_3'UTR|SYNJ1_uc002yqg.2_Silent_p.F1383F|SYNJ1_uc002yqi.2_3'UTR|SYNJ1_uc002yqe.3_Silent_p.F55F	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	1430	Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						CTTCTTTGGAGAACCATGAAG	0.468													19	37					0	0	1	0	0
ITSN1	6453	broad.mit.edu	37	21	35237482	35237482	+	Silent	SNP	C	G	G	rs141656361		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:35237482C>G	uc002yta.1	+	32	4186	c.3918C>G	c.(3916-3918)TCC>TCG	p.S1306S	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Silent_p.S1301S|ITSN1_uc002ytj.2_Silent_p.S1301S|ITSN1_uc010gmm.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1306	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						AGAAGATGTCCGGGGAGAAGA	0.592													12	17					0	0	1	0	0
MORC3	23515	broad.mit.edu	37	21	37744705	37744705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:37744705C>T	uc002yvi.2	+	16	2618	c.2542C>T	c.(2542-2544)CGT>TGT	p.R848C		NM_015358	NP_056173	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	848	Potential.				cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			ovary(2)	2						GTCACAAATCCGTTCACAGTG	0.323													17	46					0	0	1	0	0
BRWD1	54014	broad.mit.edu	37	21	40574346	40574346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:40574346G>A	uc002yxk.1	-	38	4629	c.4490C>T	c.(4489-4491)TCT>TTT	p.S1497F	BRWD1_uc010goc.1_Missense_Mutation_p.S140F|BRWD1_uc002yxl.2_Missense_Mutation_p.S1497F|BRWD1_uc010god.1_Missense_Mutation_p.S415F	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1497					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				AACACCTGAAGAGATACCAGC	0.413													15	39					0	0	1	0	0
ABCG1	9619	broad.mit.edu	37	21	43716492	43716492	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:43716492C>G	uc002zaq.2	+	15	2133	c.2027C>G	c.(2026-2028)GCA>GGA	p.A676G	ABCG1_uc002zan.2_Missense_Mutation_p.A666G|ABCG1_uc002zam.2_Missense_Mutation_p.A642G|ABCG1_uc002zao.2_Missense_Mutation_p.A661G|ABCG1_uc002zap.2_Missense_Mutation_p.A664G|ABCG1_uc002zar.2_Missense_Mutation_p.A675G|ABCG1_uc011aev.1_Missense_Mutation_p.A687G|uc002zau.2_5'Flank	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	676	Cytoplasmic (Potential).				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	AAAATCCGGGCAGAGAGGTAA	0.522													6	18					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45949687	45949687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:45949687G>A	uc002zfe.1	-	5	850	c.784C>T	c.(784-786)CCC>TCC	p.P262S	C21orf29_uc010gpv.1_Missense_Mutation_p.P194S	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	262					cell adhesion	extracellular region	structural molecule activity				0						TAACCATAGGGATATTTTAGC	0.642													16	70					0	0	1	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994014	45994014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:45994014C>T	uc002zfk.1	+	1	409	c.379C>T	c.(379-381)CCC>TCC	p.P127S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	127	36 X 5 AA repeats of C-C-X(3).|10.					keratin filament					0						GTGCTGTGTGCCCGTCTGCTG	0.642													6	163					0	0	1	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46057600	46057600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:46057600C>T	uc002zfq.2	+	1	328	c.266C>T	c.(265-267)CCC>CTC	p.P89L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	89	15 X 5 AA repeats of C-C-X(3).					keratin filament					0						ACCTCCTCCCcctgccagcag	0.343													28	87					0	0	1	0	0
COL6A2	1292	broad.mit.edu	37	21	47531982	47531982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr21:47531982C>T	uc002zia.1	+	3	287	c.205C>T	c.(205-207)CAC>TAC	p.H69Y	COL6A2_uc002zhy.1_Missense_Mutation_p.H69Y|COL6A2_uc002zhz.1_Missense_Mutation_p.H69Y|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	69	VWFA 1.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CCTGCTCTTCCACATGAAGCA	0.617													15	45					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16279248	16279248	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:16279248C>T	uc010gqp.2	-	4	1027	c.975G>A	c.(973-975)GTG>GTA	p.V325V	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.V44V|POTEH_uc002zlj.1_Silent_p.V160V	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TTAAAAATTTCACCACTTGCT	0.328													25	287					0	0	1	0	0
CECR5	27440	broad.mit.edu	37	22	17619575	17619575	+	Missense_Mutation	SNP	G	A	A	rs140503307		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:17619575G>A	uc002zmf.2	-	7	828	c.800C>T	c.(799-801)ACG>ATG	p.T267M	CECR5_uc002zmd.2_Missense_Mutation_p.T78M|CECR5_uc002zme.2_Missense_Mutation_p.T59M|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Missense_Mutation_p.T237M	NM_033070	NP_149061	Q9BXW7	CECR5_HUMAN	cat eye syndrome chromosome region, candidate 5	267							hydrolase activity				0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)				CTCCTTGCCCGTCACTTTCTG	0.577													54	143					0	0	1	0	0
ATP6V1E1	529	broad.mit.edu	37	22	18082825	18082825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:18082825G>A	uc002zmr.1	-	6	590	c.403C>T	c.(403-405)CGT>TGT	p.R135C	ATP6V1E1_uc002zms.1_Missense_Mutation_p.R105C|ATP6V1E1_uc002zmt.1_Missense_Mutation_p.R113C	NM_001696	NP_001687	P36543	VATE1_HUMAN	vacuolar H+ ATPase E1 isoform a	135					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|cytosol|endosome|proton-transporting two-sector ATPase complex, catalytic domain	protein binding|proton-transporting ATPase activity, rotational mechanism			large_intestine(1)|central_nervous_system(1)	2		all_epithelial(15;0.206)		Lung(27;0.19)		TTCCTGCAACGAACAATCATT	0.269													12	27					0	0	1	0	0
GGT3P	2679	broad.mit.edu	37	22	18778612	18778612	+	RNA	SNP	C	T	T	rs1055042	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:18778612C>T	uc011ago.1	-	2		c.208G>A			GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						GCGGCCACGGCAGCCCTGGTG	0.597													5	18					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	18844766	18844766	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:18844766G>A	uc002zoe.2	+	4		c.2020G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CAGCCTCTGAGGGCAGCAGTG	0.557													7	12					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	18846165	18846165	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:18846165G>A	uc002zoe.2	+	5		c.2527G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TGCGGGAGGAGGGAATGTTCT	0.617													3	18					0	0	1	0	0
TXNRD2	10587	broad.mit.edu	37	22	19865655	19865655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:19865655G>A	uc011ahc.1	-	16	1436	c.1403C>T	c.(1402-1404)CCC>CTC	p.P468L	TXNRD2_uc002zql.1_Missense_Mutation_p.P222L|TXNRD2_uc002zqm.1_RNA|TXNRD2_uc002zqn.1_RNA|TXNRD2_uc002zqo.1_RNA|TXNRD2_uc002zqp.1_RNA|TXNRD2_uc002zqr.1_Missense_Mutation_p.P467L|TXNRD2_uc002zqj.1_RNA|TXNRD2_uc002zqq.1_Missense_Mutation_p.P118L	NM_006440	NP_006431	Q9NNW7	TRXR2_HUMAN	thioredoxin reductase 2 precursor	468					cell redox homeostasis|response to oxygen radical	mitochondrion	flavin adenine dinucleotide binding|NADP binding|thioredoxin-disulfide reductase activity			ovary(2)	2	Colorectal(54;0.0993)					GCCTGCGTTGGGGCCAAGGAA	0.612													11	28					0	0	1	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20132776	20132776	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:20132776C>T	uc002zrq.2	+	11	2257	c.2151C>T	c.(2149-2151)CCC>CCT	p.P717P	ZDHHC8_uc002zrr.1_Intron|ZDHHC8_uc010gsa.2_Silent_p.P523P	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	717	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					TGAAGACTCCCCCAAGTAAGC	0.637													61	164					0	0	1	0	0
CCDC116	164592	broad.mit.edu	37	22	21989287	21989287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:21989287C>T	uc002zve.2	+	4	1028	c.935C>T	c.(934-936)GCC>GTC	p.A312V	CCDC116_uc011aih.1_Missense_Mutation_p.A312V	NM_152612	NP_689825	Q8IYX3	CC116_HUMAN	coiled-coil domain containing 116	312										ovary(1)|skin(1)	2	Colorectal(54;0.105)					CTCTTCCCTGCCCTGCAAAGC	0.652													24	66					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23651651	23651651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:23651651C>T	uc002zww.2	+	17	3649	c.3053C>T	c.(3052-3054)ACC>ATC	p.T1018I	BCR_uc002zwx.2_Missense_Mutation_p.T974I|BCR_uc011aiy.1_Missense_Mutation_p.T607I	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	1018					regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						TGGCAGCGCACCGTCATCGCC	0.607			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								5	15					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23657640	23657640	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:23657640C>T	uc002zww.2	+	23	4343	c.3747C>T	c.(3745-3747)TTC>TTT	p.F1249F	BCR_uc002zwx.2_Silent_p.F1205F|BCR_uc011aiy.1_Silent_p.F838F	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	1249					regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						TGCTGTACTTCCTGCAGCTGG	0.622			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								17	51					0	0	1	0	0
SUSD2	56241	broad.mit.edu	37	22	24579589	24579589	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:24579589C>T	uc002zzn.1	+	3	458	c.414C>T	c.(412-414)TTC>TTT	p.F138F		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	138	Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GCCACTCCTTCCCTCGTGCGG	0.637													13	43					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25251015	25251015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:25251015C>T	uc003abg.2	+	6	665	c.508C>T	c.(508-510)CTT>TTT	p.L170F	SGSM1_uc003abh.2_Missense_Mutation_p.L170F|SGSM1_uc010guu.1_Missense_Mutation_p.L170F|SGSM1_uc003abj.2_Missense_Mutation_p.L170F|SGSM1_uc003abi.1_Missense_Mutation_p.L145F|SGSM1_uc003abf.2_Missense_Mutation_p.L170F	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	170	RUN.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CGGCCCCATCCTTGCATCTTT	0.522													7	11					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25294301	25294301	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:25294301C>T	uc003abg.2	+	20	2707	c.2550C>T	c.(2548-2550)TTC>TTT	p.F850F	SGSM1_uc003abh.2_Silent_p.F789F|SGSM1_uc010guu.1_Silent_p.F795F|SGSM1_uc003abj.2_Silent_p.F734F|SGSM1_uc003abi.1_Silent_p.F770F	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	850	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TGGACGAGTTCATGTCCATCA	0.627													17	52					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26400779	26400779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:26400779C>T	uc003abz.1	+	42	6678	c.6428C>T	c.(6427-6429)CCT>CTT	p.P2143L	MYO18B_uc003aca.1_Missense_Mutation_p.P2024L|MYO18B_uc010guy.1_Missense_Mutation_p.P2025L|MYO18B_uc010guz.1_Missense_Mutation_p.P2023L|MYO18B_uc011aka.1_Missense_Mutation_p.P1297L|MYO18B_uc011akb.1_Missense_Mutation_p.P1656L|MYO18B_uc010gva.1_Missense_Mutation_p.P126L	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2143						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ATGAGGACTCCTTCTCGACAG	0.547													28	78					0	0	1	0	0
RHBDD3	25807	broad.mit.edu	37	22	29656592	29656592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:29656592G>A	uc003aeq.1	-	6	1078	c.706C>T	c.(706-708)CCT>TCT	p.P236S	RHBDD3_uc003aer.1_RNA	NM_012265	NP_036397	Q9Y3P4	RHBD3_HUMAN	rhomboid domain containing 3	236						integral to membrane	serine-type endopeptidase activity			ovary(1)	1						GGCGGTCCAGGGATGGGAGGC	0.672													7	12					0	0	1	0	0
EWSR1	2130	broad.mit.edu	37	22	29684726	29684726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:29684726C>T	uc003aet.2	+	8	1253	c.925C>T	c.(925-927)CGT>TGT	p.R309C	EWSR1_uc003aes.3_Missense_Mutation_p.R309C|EWSR1_uc003aev.2_Missense_Mutation_p.R315C|EWSR1_uc003aew.2_Missense_Mutation_p.R253C|EWSR1_uc003aex.2_Missense_Mutation_p.R309C|EWSR1_uc003aey.2_Missense_Mutation_p.R104C|EWSR1_uc003aez.2_5'Flank	NM_005243	NP_005234	Q01844	EWS_HUMAN	Ewing sarcoma breakpoint region 1 isoform 2	309	Arg/Gly/Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	calmodulin binding|nucleotide binding|RNA binding|zinc ion binding		EWSR1/FLI1(2266)|EWSR1/ATF1(323)|EWSR1/WT1(231)|EWSR1/ERG(162)|EWSR1/NR4A3(140)|EWSR1/DDIT3(43)|EWSR1/CREB1(42)|EWSR1/FEV(10)|EWSR1/POU5F1(10)|EWSR1/ETV1(7)|EWSR1/ETV4(6)|EWSR1/ZNF384(4)|EWSR1/PBX1(3)|EWSR1/SP3(3)|EWSR1/PATZ1(2)	bone(2526)|soft_tissue(702)|skin(8)|autonomic_ganglia(4)|haematopoietic_and_lymphoid_tissue(4)|salivary_gland(2)|central_nervous_system(2)|NS(2)|pancreas(2)|lung(1)|ovary(1)	3254						GGGATTTGATCGTGGAGGCAT	0.547			T	FLI1|ERG|ZNF278|NR4A3|FEV|ATF1|ETV1|ETV4|WT1|ZNF384|CREB1|POU5F1| PBX1	Ewing sarcoma| desmoplastic small round cell tumor |ALL|clear cell sarcoma|sarcoma|myoepithelioma								8	19					0	0	1	0	0
OSM	5008	broad.mit.edu	37	22	30660378	30660378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:30660378C>T	uc003ahb.2	-	3	305	c.253G>A	c.(253-255)GAG>AAG	p.E85K		NM_020530	NP_065391	P13725	ONCM_HUMAN	oncostatin M precursor	85					cell proliferation|immune response|negative regulation of cell proliferation|negative regulation of hormone secretion|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of growth	extracellular space|oncostatin-M receptor complex	cytokine activity|growth factor activity|oncostatin-M receptor binding			skin(1)	1			Epithelial(10;0.206)			CTCAGGGTCTCCTCACTGGGG	0.647													15	31					0	0	1	0	0
SEC14L3	266629	broad.mit.edu	37	22	30864642	30864642	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:30864642G>A	uc003ahy.2	-	5	365	c.276C>T	c.(274-276)GAC>GAT	p.D92D	SEC14L3_uc003ahz.2_Silent_p.D15D|SEC14L3_uc003aia.2_Silent_p.D33D|SEC14L3_uc003aib.2_Silent_p.D33D	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	92	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	AGCCATCACGGTCATAGCCAC	0.547													40	87					0	0	1	0	0
SLC5A1	6523	broad.mit.edu	37	22	32439338	32439338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:32439338C>T	uc003amc.2	+	1	302	c.70C>T	c.(70-72)CGC>TGC	p.R24C		NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	24	Extracellular (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						CGAGCTCATTCGCAATGCAGC	0.612													13	26					0	0	1	0	0
TOM1	10043	broad.mit.edu	37	22	35719851	35719851	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:35719851C>T	uc003ann.2	+	6	717	c.592C>T	c.(592-594)CTG>TTG	p.L198L	TOM1_uc011ami.1_Silent_p.L165L|TOM1_uc011amj.1_Silent_p.L41L|TOM1_uc003ans.2_Silent_p.L41L|TOM1_uc011amk.1_Silent_p.L160L|TOM1_uc003anp.2_Silent_p.L198L|TOM1_uc011aml.1_Silent_p.L153L|TOM1_uc003ano.2_RNA|TOM1_uc003anq.2_Silent_p.L192L|TOM1_uc003anr.2_Silent_p.L41L	NM_005488	NP_005479	O60784	TOM1_HUMAN	target of myb1 isoform 1	198					endocytosis|endosome transport|intracellular protein transport	cytosol|early endosome|membrane	protein binding			ovary(1)	1						TGCTGCCCCTCTGCCCGCCCC	0.617													26	49					0	0	1	0	0
MYH9	4627	broad.mit.edu	37	22	36692960	36692960	+	Silent	SNP	G	A	A	rs144389749		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:36692960G>A	uc003apg.2	-	25	3432	c.3201C>T	c.(3199-3201)CTC>CTT	p.L1067L		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1067	Potential.		Missing (in MHA and SBS).		actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TCTGGGCCTGGAGCTCGGCGA	0.682			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				19	32					0	0	1	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823280	38823280	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:38823280G>A	uc003avs.1	-	2	955	c.858C>T	c.(856-858)ATC>ATT	p.I286I	KCNJ4_uc003avt.1_Silent_p.I286I	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	286	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					GGATGACCACGATCTCAAAGT	0.622													15	30					0	0	1	0	0
GTPBP1	9567	broad.mit.edu	37	22	39123256	39123256	+	Silent	SNP	T	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:39123256T>G	uc003awg.2	+	9	1594	c.1440T>G	c.(1438-1440)GTT>GTG	p.V480V		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	480					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					TGGTGATGGTTTCCCCACGTT	0.577													38	76					0	0	1	0	0
MGAT3	4248	broad.mit.edu	37	22	39884071	39884071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:39884071C>T	uc003axv.3	+	2	958	c.719C>T	c.(718-720)TCC>TTC	p.S240F	MGAT3_uc010gxy.2_Missense_Mutation_p.S240F	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	240	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					GTGTGCGAGTCCAACTTCACG	0.602													12	34					0	0	1	0	0
ENTHD1	150350	broad.mit.edu	37	22	40140033	40140033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:40140033C>T	uc003ayg.2	-	7	1726	c.1475G>A	c.(1474-1476)GGA>GAA	p.G492E		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	492										ovary(2)|skin(1)	3	Melanoma(58;0.0749)					TGGAAGAATTCCCAGTAGATT	0.408													9	32					0	0	1	0	0
ENTHD1	150350	broad.mit.edu	37	22	40140246	40140246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:40140246G>A	uc003ayg.2	-	7	1513	c.1262C>T	c.(1261-1263)TCC>TTC	p.S421F		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	421										ovary(2)|skin(1)	3	Melanoma(58;0.0749)					AGATGACATGGATAAAGGAGA	0.413													13	38					0	0	1	0	0
EP300	2033	broad.mit.edu	37	22	41513565	41513566	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:41513565_41513566CC>GT	uc003azl.3	+	2	864_865	c.469_470CC>GT	c.(469-471)CCA>GTA	p.P157V		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	157					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GATGAACAGTCCAGTAAATCAG	0.505			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				12	34					0	0	1	0	0
WBP2NL	164684	broad.mit.edu	37	22	42415351	42415351	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:42415351C>T	uc011ape.1	+	3	115	c.99C>T	c.(97-99)TTC>TTT	p.F33F	WBP2NL_uc003bbt.2_Silent_p.F33F|WBP2NL_uc011apk.1_Intron|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_5'Flank	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	33					egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						AGCTCTCCTTCCCACAGCGAT	0.408													22	46					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44127674	44127674	+	Missense_Mutation	SNP	T	C	C	rs150224112		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:44127674T>C	uc003bdy.1	-	8	877	c.662A>G	c.(661-663)AAC>AGC	p.N221S	EFCAB6_uc003bdz.1_Missense_Mutation_p.N69S|EFCAB6_uc010gzi.1_Missense_Mutation_p.N69S|EFCAB6_uc010gzk.1_RNA|EFCAB6_uc011aqa.1_Missense_Mutation_p.N115S|EFCAB6_uc003bea.1_Missense_Mutation_p.N218S|EFCAB6_uc003beb.3_Missense_Mutation_p.N115S	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	221					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTTGTGGATGTTGTAGTGTTT	0.323													9	19					0	0	1	0	0
PNPLA5	150379	broad.mit.edu	37	22	44280191	44280191	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:44280191C>T	uc003beg.2	-	7	1081	c.984G>A	c.(982-984)CGG>CGA	p.R328R	PNPLA5_uc011aqc.1_Silent_p.R188R|PNPLA5_uc003beh.2_Silent_p.R214R	NM_138814	NP_620169	Q7Z6Z6	PLPL5_HUMAN	patatin-like phospholipase domain containing 5	328					lipid catabolic process		hydrolase activity				0		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				AGCGGGCCCACCGGCTGGGAT	0.627											OREG0026622	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	76					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45279175	45279175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:45279175C>T	uc003bfn.2	-	13	1538	c.1387G>A	c.(1387-1389)GAG>AAG	p.E463K	PHF21B_uc003bfm.2_Missense_Mutation_p.E259K|PHF21B_uc011aqk.1_Missense_Mutation_p.E409K|PHF21B_uc011aql.1_Missense_Mutation_p.E421K	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	463	Potential.						zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		GTCTTCAACTCCAGGCATTTC	0.642													14	51					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50552093	50552093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:50552093C>T	uc003bjj.2	+	6	843	c.760C>T	c.(760-762)CAT>TAT	p.H254Y	MOV10L1_uc003bjk.3_Missense_Mutation_p.H254Y|MOV10L1_uc011arp.1_Missense_Mutation_p.H234Y|MOV10L1_uc011arq.1_Missense_Mutation_p.H15Y|MOV10L1_uc010hao.1_5'Flank	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	254					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		CGCCCCTGTTCATGAGGCCAC	0.507													22	48					0	0	1	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50658708	50658708	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr22:50658708G>A	uc003bkb.1	-	16	4592	c.4080C>T	c.(4078-4080)ACC>ACT	p.T1360T	TUBGCP6_uc003bka.1_Silent_p.T447T|TUBGCP6_uc010har.1_Silent_p.T1352T|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1360					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TGTCTCCCGGGGTGTTGGGCC	0.647													14	37					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	382569	382569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:382569C>T	uc003bou.2	+	6	749	c.478C>T	c.(478-480)CCA>TCA	p.P160S	CHL1_uc003bot.2_Missense_Mutation_p.P160S|CHL1_uc003bow.1_Missense_Mutation_p.P160S|CHL1_uc011asi.1_Missense_Mutation_p.P160S	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	160	Ig-like C2-type 2.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CAAAGGCCTCCCACCTTTACA	0.398													4	17					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	391095	391095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:391095G>A	uc003bou.2	+	9	1125	c.854G>A	c.(853-855)AGA>AAA	p.R285K	CHL1_uc003bot.2_Missense_Mutation_p.R301K|CHL1_uc003bow.1_Missense_Mutation_p.R285K|CHL1_uc011asi.1_Missense_Mutation_p.R301K	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	285	Ig-like C2-type 3.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CCAAAGGGGAGAGAAACAAAA	0.363													18	18					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2928874	2928874	+	Silent	SNP	G	A	A	rs141461698	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:2928874G>A	uc003bpc.2	+	9	1127	c.906G>A	c.(904-906)GGG>GGA	p.G302G	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Silent_p.G302G	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	302	Ig-like C2-type 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ATTCCAGAGGGAAAAATGTAG	0.373													8	26					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4716799	4716799	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:4716799C>T	uc003bqa.2	+	23	2994	c.2646C>T	c.(2644-2646)TTC>TTT	p.F882F	ITPR1_uc010hca.1_Silent_p.F867F|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Silent_p.F867F	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	882	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TCTACAACTTCTCTGACCTTC	0.368													7	35					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7620949	7620949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:7620949G>A	uc003bqm.2	+	8	2630	c.2356G>A	c.(2356-2358)GAA>AAA	p.E786K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.E786K|GRM7_uc003bql.2_Missense_Mutation_p.E786K|GRM7_uc003bqn.1_Missense_Mutation_p.E369K|GRM7_uc010hch.1_Missense_Mutation_p.E297K	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	786	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GAATTTTAACGAAGCCAAGCC	0.433													10	28					0	0	1	0	0
SRGAP3	9901	broad.mit.edu	37	3	9074387	9074387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:9074387G>A	uc003brf.1	-	12	2162	c.1486C>T	c.(1486-1488)CTC>TTC	p.L496F	SRGAP3_uc003brg.1_Intron|SRGAP3_uc003bri.1_RNA	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	496	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		TACACTGAGAGAGGCCTAGGT	0.468			T	RAF1	pilocytic astrocytoma								30	50					0	0	1	0	0
PPARG	5468	broad.mit.edu	37	3	12458487	12458487	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:12458487C>T	uc003bwx.2	+	6	1195	c.1104C>T	c.(1102-1104)CTC>CTT	p.L368L	PPARG_uc003bwr.2_Silent_p.L340L|PPARG_uc003bws.2_Silent_p.L340L|PPARG_uc003bwu.2_Silent_p.L340L|PPARG_uc003bwv.2_Intron|PPARG_uc010hea.1_RNA	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	368	Ligand-binding.				activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	ATGGGGTTCTCATATCCGAGG	0.443			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						149	360					0	0	1	0	0
TSEN2	80746	broad.mit.edu	37	3	12545207	12545207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:12545207G>A	uc003bxc.2	+	5	1142	c.755G>A	c.(754-756)GGG>GAG	p.G252E	TSEN2_uc003bwy.2_Missense_Mutation_p.G252E|TSEN2_uc003bwz.2_Missense_Mutation_p.G193E|TSEN2_uc003bxa.2_Missense_Mutation_p.G252E|TSEN2_uc011auq.1_Missense_Mutation_p.G252E|TSEN2_uc003bxb.2_Missense_Mutation_p.G252E|TSEN2_uc011aur.1_Missense_Mutation_p.G161E	NM_025265	NP_079541	Q8NCE0	SEN2_HUMAN	tRNA-intron nuclease 2 isoform 1	252					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity			central_nervous_system(1)	1						GGGGACAGAGGGCCTGACCAT	0.552													100	292					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13367352	13367352	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:13367352G>A	uc003bxv.1	-	33	4670	c.4587C>T	c.(4585-4587)GCC>GCT	p.A1529A		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1529	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CGGATCCCACGGCCCGGGCCA	0.632													35	85					0	0	1	0	0
GRIP2	80852	broad.mit.edu	37	3	14565975	14565975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:14565975C>T	uc011avi.1	-	5	619	c.619G>A	c.(619-621)GAT>AAT	p.D207N	GRIP2_uc011avh.1_5'UTR|GRIP2_uc003byu.1_3'UTR|GRIP2_uc003byv.1_Missense_Mutation_p.D110N	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	110	PDZ 1.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						ATGATCTCATCGTGGCGGAGC	0.597													5	6					0	0	1	0	0
ZFYVE20	64145	broad.mit.edu	37	3	15116339	15116339	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:15116339G>A	uc003bzm.1	-	14	1919	c.1305C>T	c.(1303-1305)GCC>GCT	p.A435A	ZFYVE20_uc010hek.1_Silent_p.A435A	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	435	Necessary for the interaction with RAB4A.|Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						TTCTCAAGGGGGCAGGGCCCC	0.637													19	51					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19575020	19575020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:19575020C>T	uc003cbk.1	+	16	2948	c.2753C>T	c.(2752-2754)TCC>TTC	p.S918F	KCNH8_uc010hex.1_Missense_Mutation_p.S379F	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	918	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						GTGTGTCCCTCCAGGGAGAGC	0.522													23	58					0	0	1	0	0
VENTXP7	391518	broad.mit.edu	37	3	21447649	21447649	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:21447649C>T	uc003ccd.2	+	1		c.432C>T				NR_002311				Homo sapiens VENT homeobox (Xenopus laevis) pseudogene 7 (VENTXP7), non-coding RNA.												0						GTTTCAAAATCGCCGGATGAA	0.577													3	8					0	0	1	0	0
ZNF385D	79750	broad.mit.edu	37	3	21462713	21462713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:21462713G>A	uc003cce.2	-	8	1589	c.1181C>T	c.(1180-1182)CCT>CTT	p.P394L		NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	394						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						AATTTAGTAAGGAGCAAACAG	0.438													5	16					0	0	1	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751914	26751914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:26751914G>A	uc003cdp.2	+	2	1340	c.751G>A	c.(751-753)GAA>AAA	p.E251K	LRRC3B_uc003cdq.2_Missense_Mutation_p.E251K	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	251						integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						GAAAGCAGATGAACCTGATGA	0.413													12	35					0	0	1	0	0
ZCWPW2	152098	broad.mit.edu	37	3	28476714	28476714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:28476714C>T	uc003ceh.2	+	4	614	c.446C>T	c.(445-447)TCA>TTA	p.S149L	ZCWPW2_uc003cei.2_Missense_Mutation_p.S149L|ZCWPW2_uc010hfo.2_5'UTR	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	149	PWWP.						zinc ion binding			ovary(2)	2						CATTCAAGATCATGGATAAAG	0.363													17	47					0	0	1	0	0
TGFBR2	7048	broad.mit.edu	37	3	30713629	30713629	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:30713629G>A	uc003ceo.2	+	4	1336	c.954G>A	c.(952-954)GGG>GGA	p.G318G	TGFBR2_uc003cen.2_Silent_p.G343G	NM_003242	NP_003233	P37173	TGFR2_HUMAN	transforming growth factor, beta receptor II	318	Protein kinase.|Cytoplasmic (Potential).				activation of protein kinase activity|brain development|embryonic cranial skeleton morphogenesis|embryonic hemopoiesis|heart development|myeloid dendritic cell differentiation|palate development|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of B cell tolerance induction|positive regulation of mesenchymal cell proliferation|positive regulation of NK T cell differentiation|positive regulation of reactive oxygen species metabolic process|positive regulation of T cell tolerance induction|positive regulation of tolerance induction to self antigen|response to cholesterol|response to drug|transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|vasculogenesis	caveola|external side of plasma membrane	ATP binding|glycosaminoglycan binding|metal ion binding|protein binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type II|type I transforming growth factor beta receptor binding|type I transforming growth factor beta receptor binding|type III transforming growth factor beta receptor binding			pancreas(9)|large_intestine(6)|stomach(4)|lung(3)|ovary(3)|central_nervous_system(1)	26						CGGAGTTGGGGAAACAATACT	0.552													21	39					0	0	1	0	0
GADL1	339896	broad.mit.edu	37	3	30891538	30891538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:30891538C>T	uc003cep.2	-	6	648	c.601G>A	c.(601-603)GAA>AAA	p.E201K	GADL1_uc003ceq.1_Missense_Mutation_p.E201K	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	201					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	AGCCCCTTTTCCTTAATATCA	0.323													22	20					0	0	1	0	0
GADL1	339896	broad.mit.edu	37	3	30891550	30891550	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:30891550G>A	uc003cep.2	-	6	636	c.589C>T	c.(589-591)CCT>TCT	p.P197S	GADL1_uc003ceq.1_Missense_Mutation_p.P197S	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	197					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	TTAATATCAGGACAATATTTG	0.323													5	30					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36897228	36897228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:36897228C>T	uc003cgj.2	-	3	2505	c.2203G>A	c.(2203-2205)GAA>AAA	p.E735K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1285					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GGCCATATTTCATTTTTGAAC	0.468													50	118					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36897937	36897937	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:36897937C>T	uc003cgj.2	-	3	1796	c.1494G>A	c.(1492-1494)AAG>AAA	p.K498K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1048					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CGTGGAATTTCTTCCACAATC	0.532													13	37					0	0	1	0	0
DLEC1	9940	broad.mit.edu	37	3	38104270	38104270	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:38104270C>T	uc003cho.1	+	5	1093	c.1072C>T	c.(1072-1074)CAG>TAG	p.Q358*	DLEC1_uc003chp.1_Nonsense_Mutation_p.Q358*|DLEC1_uc010hgv.1_Nonsense_Mutation_p.Q358*|DLEC1_uc010hgw.1_Nonsense_Mutation_p.Q57*|DLEC1_uc003chq.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	358					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		AGGAGAATTCCAGAGTACAGA	0.468													9	38					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38592513	38592513	+	Missense_Mutation	SNP	C	T	T	rs137854601		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:38592513C>T	uc003cio.2	-	28	5544	c.5350G>A	c.(5350-5352)GAG>AAG	p.E1784K	SCN5A_uc003cin.2_Missense_Mutation_p.E1783K|SCN5A_uc003cil.3_Missense_Mutation_p.E1784K|SCN5A_uc010hhi.2_Missense_Mutation_p.E1766K|SCN5A_uc010hhk.2_Missense_Mutation_p.E1751K|SCN5A_uc011ayr.1_Missense_Mutation_p.E1730K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1784			E -> K (in LQT3 and BRS1).		blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CTCAGGGGCTCGGTGCTCTCC	0.498													23	62					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739746	38739746	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:38739746G>A	uc003ciq.2	-	27	4965	c.4965C>T	c.(4963-4965)TTC>TTT	p.F1655F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1655	IV.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGGTAATCTGGAAGAGGCACA	0.587													39	89					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38791583	38791583	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:38791583G>A	uc003ciq.2	-	12	1848	c.1848C>T	c.(1846-1848)ATC>ATT	p.I616I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	616					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CGGAGGTTATGATACTGACAA	0.463													11	38					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38908887	38908887	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:38908887G>A	uc011ays.1	-	23	4075	c.3876C>T	c.(3874-3876)ATC>ATT	p.I1292I		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1292	Helical; Name=S6 of repeat III; (By similarity).|III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGCCAAAGATGATAAAGACTA	0.333													20	38					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38908899	38908899	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:38908899G>A	uc011ays.1	-	23	4063	c.3864C>T	c.(3862-3864)TTC>TTT	p.F1288F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1288	Helical; Name=S6 of repeat III; (By similarity).|III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TAAAGACTACGAAGTAAATGT	0.338													11	46					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38912214	38912214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:38912214C>T	uc011ays.1	-	22	3980	c.3781G>A	c.(3781-3783)GAT>AAT	p.D1261N		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1261	III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TATATAATATCCATCCAGCCC	0.403													14	47					0	0	1	0	0
CTNNB1	1499	broad.mit.edu	37	3	41266077	41266077	+	Nonsense_Mutation	SNP	G	A	A	rs121913417		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:41266077G>A	uc010hia.1	+	4	230	c.74G>A	c.(73-75)TGG>TAG	p.W25*	CTNNB1_uc003ckp.2_Nonsense_Mutation_p.W25*|CTNNB1_uc003ckq.2_Nonsense_Mutation_p.W25*|CTNNB1_uc003ckr.2_Nonsense_Mutation_p.W25*|CTNNB1_uc011azf.1_Nonsense_Mutation_p.W18*|CTNNB1_uc011azg.1_Intron|uc010hib.1_Intron	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	25			Missing (in hepatocellular carcinoma).		adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding	p.A5_A80del(63)|p.H24_S47del(9)|p.A5_Q143del(7)|p.A5_A80>D(7)|p.WQQQSYLD25?(5)|p.W25_D32del(4)|p.W25_I140del(4)|p.V22_G38del(3)|p.S23_S33del(3)|p.T3_A126del(2)|p.V22_S33del(2)|p.A5fs*7(2)|p.W25_H36del(2)|p.V22_L139>V(2)|p.W25L(2)|p.M5_N141>D(2)|p.?(2)|p.W25*(2)|p.L10_N141del(2)|p.A5_Y142>D(2)|p.A20_Q143del(1)|p.A5_Q143>E(1)|p.A13_R151del(1)|p.A5_Q72del(1)|p.D6_S29del(1)|p.M14_S45del(1)|p.E9_S47del(1)|p.A5_G80>(1)|p.A20_N141del(1)|p.M8_G50del(1)|p.M1_A87del(1)|p.D11_Y142>H(1)|p.D6_A43del(1)|p.A5_D144>D(1)|p.A5_T42del(1)|p.H24_G38del(1)|p.S23_I35del(1)|p.V22_G80>NNNNN(1)|p.H24_L31del(1)|p.W25_S33del(1)|p.V22_T102del(1)|p.A20_A80del(1)|p.V22_S71>A(1)|p.D6_K133del(1)|p.A5_T59del(1)|p.A20_I35del(1)|p.M1_V173del(1)|p.E15_I140>V(1)|p.A5_R90del(1)|p.S23_A39del(1)|p.D17_P128del(1)|p.H24_M131del(1)|p.A21_A80del(1)|p.A20_R151del(1)|p.L7_I140del(1)|p.A5_T40del(1)|p.E9_A80del(1)|p.A5_E54del(1)|p.V22_A80del(1)|p.W25_I35del(1)|p.M8_A80del(1)|p.E9_I140del(1)|p.P16_K133del(1)|p.V22_Y64del(1)|p.A20_Q72del(1)|p.D6_I140del(1)|p.W25_A80del(1)|p.S23_I140del(1)|p.A20_S111del(1)|p.K19_Y142>V(1)|p.D17_A126del(1)|p.M1_T42del(1)|p.A5_I35del(1)|p.A20_L148del(1)	CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	GTTAGTCACTGGCAGCAACAG	0.458		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				8	23					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916467	42916467	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:42916467C>T	uc003cmh.2	-	1	1167	c.842G>A	c.(841-843)TGG>TAG	p.W281*	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Nonsense_Mutation_p.W281*	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	281					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		CTGGGAGGCCCAGAGCATCAT	0.577													10	21					0	0	1	0	0
C3orf39	84892	broad.mit.edu	37	3	43122913	43122913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:43122913G>A	uc003cmq.1	-	2	152	c.11C>T	c.(10-12)TCG>TTG	p.S4L	C3orf39_uc003cmr.1_Missense_Mutation_p.S4L	NM_032806	NP_116195	Q8NAT1	AGO61_HUMAN	glycosyltransferase precursor	4						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0571)|Kidney(284;0.0718)		GAACACCGCCGAGAGGTGCAT	0.637													4	6					0	0	1	0	0
C3orf23	285343	broad.mit.edu	37	3	44449140	44449140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:44449140C>T	uc010him.2	+	11	1702	c.1457C>T	c.(1456-1458)CCT>CTT	p.P486L	C3orf23_uc003cnd.3_Missense_Mutation_p.P486L|C3orf23_uc003cne.3_Missense_Mutation_p.P342L	NM_173826	NP_776187	Q8N3R3	CC023_HUMAN	hypothetical protein LOC285343 isoform 1	486						mitochondrion				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(197;0.0468)|Kidney(197;0.0585)		CTTTGTATTCCTTGGAATTGG	0.328													20	41					0	0	1	0	0
TGM4	7047	broad.mit.edu	37	3	44952563	44952563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:44952563G>A	uc003coc.3	+	12	1793	c.1720G>A	c.(1720-1722)GAA>AAA	p.E574K		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	574					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	GGAGTCTAAGGAAATCATGGC	0.468													25	69					0	0	1	0	0
EXOSC7	23016	broad.mit.edu	37	3	45046796	45046796	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:45046796C>T	uc003coi.2	+	6	534	c.505C>T	c.(505-507)CGA>TGA	p.R169*	EXOSC7_uc003coh.1_Nonsense_Mutation_p.R104*|EXOSC7_uc010his.1_Nonsense_Mutation_p.R88*|EXOSC7_uc003coj.2_Nonsense_Mutation_p.R169*	NM_015004	NP_055819	Q15024	EXOS7_HUMAN	exosome component 7	169					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00911)|KIRC - Kidney renal clear cell carcinoma(197;0.0509)|Kidney(197;0.064)		ACCAAGGGTTCGAGTTTTGGA	0.438													25	51					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45127448	45127448	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:45127448G>A	uc003com.2	-	9	2328	c.2193C>T	c.(2191-2193)TCC>TCT	p.S731S		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	731	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CATACACATGGGAGTCATTGT	0.527													52	142					0	0	1	0	0
SLC6A20	54716	broad.mit.edu	37	3	45801376	45801376	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:45801376C>T	uc011bai.1	-	10	1726	c.1602G>A	c.(1600-1602)CTG>CTA	p.L534L	SLC6A20_uc003cow.2_Silent_p.L184L|SLC6A20_uc011baj.1_Silent_p.L497L	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	534	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		CTTGATACTTCAGGGTCCCCG	0.572													52	84					0	0	1	0	0
CCR1	1230	broad.mit.edu	37	3	46244743	46244743	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:46244743C>T	uc003cph.1	-	2	1133	c.1062G>A	c.(1060-1062)GGG>GGA	p.G354G	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	354	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		TGAGTCAGAACCCAGCAGAGA	0.592													13	39					0	0	1	0	0
CCR2	729230	broad.mit.edu	37	3	46399689	46399689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:46399689G>A	uc003cpn.3	+	2	1156	c.671G>A	c.(670-672)GGA>GAA	p.G224E	CCR2_uc003cpm.3_Missense_Mutation_p.G224E	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	224	Helical; Name=5; (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		TGCTACTCGGGAATCCTGAAA	0.473													118	242					0	0	1	0	0
CCR2	729230	broad.mit.edu	37	3	46399826	46399826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:46399826G>A	uc003cpn.3	+	2	1293	c.808G>A	c.(808-810)GAA>AAA	p.E270K	CCR2_uc003cpm.3_Missense_Mutation_p.E270K	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	270	Extracellular (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		CACCTTCCAGGAATTCTTCGG	0.473													52	124					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48677414	48677415	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:48677414_48677415CC>TT	uc003cul.2	-	34	9884_9885	c.9603_9604GG>AA	c.(9601-9606)CGGGAG>CGAAAG	p.E3202K	CELSR3_uc003cuf.1_Missense_Mutation_p.E3300K|CELSR3_uc010hkf.2_Missense_Mutation_p.E492K|CELSR3_uc010hkg.2_Missense_Mutation_p.E1185K	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	3202	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TCCAGCTGCTCCCGAGAGTTCG	0.673													18	41					0	0	1	0	0
USP19	10869	broad.mit.edu	37	3	49149153	49149153	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:49149153A>G	uc003cwd.1	-	20	2849	c.2688T>C	c.(2686-2688)GGT>GGC	p.G896G	USP19_uc003cwa.2_Silent_p.G704G|USP19_uc003cvz.3_Silent_p.G999G|USP19_uc011bcg.1_Silent_p.G987G|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Silent_p.G654G|USP19_uc011bch.1_Silent_p.G997G	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	896	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CCTCCAGGGAACCTGTGGAGA	0.627													12	42					0	0	1	0	0
USP19	10869	broad.mit.edu	37	3	49150050	49150050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:49150050G>A	uc003cwd.1	-	17	2370	c.2209C>T	c.(2209-2211)CGT>TGT	p.R737C	USP19_uc003cwa.2_Missense_Mutation_p.R545C|USP19_uc003cvz.3_Missense_Mutation_p.R840C|USP19_uc011bcg.1_Missense_Mutation_p.R828C|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Missense_Mutation_p.R495C|USP19_uc011bch.1_Missense_Mutation_p.R838C	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	737	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CGATGAAAACGATTCTTAATT	0.522													21	42					0	0	1	0	0
GPX1	2876	broad.mit.edu	37	3	49395482	49395482	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:49395482G>C	uc011bcl.1	-	2	310	c.230C>G	c.(229-231)CCG>CGG	p.P77R	GPX1_uc011bcm.1_Missense_Mutation_p.P77R	NM_000581	NP_000572	P07203	GPX1_HUMAN	glutathione peroxidase 1 isoform 1	77					anti-apoptosis|cell redox homeostasis|glutathione metabolic process|heart contraction|hydrogen peroxide catabolic process|negative regulation of caspase activity|purine base metabolic process|purine nucleotide catabolic process|regulation of gene expression, epigenetic|regulation of mammary gland epithelial cell proliferation|regulation of proteasomal protein catabolic process|release of cytochrome c from mitochondria|response to selenium ion|UV protection	cytosol|mitochondrion	endopeptidase inhibitor activity|glutathione peroxidase activity|SH3 domain binding			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Glutathione(DB00143)	CTGGTTGCACGGGAAGCCGAG	0.617													3	20					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49692992	49692992	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:49692992C>T	uc003cxe.3	+	5	6117	c.6003C>T	c.(6001-6003)ATC>ATT	p.I2001I		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2001					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCCAGAGGATCGGGCAGCTCT	0.602													23	75					0	0	1	0	0
MST1	4485	broad.mit.edu	37	3	49723577	49723577	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:49723577G>A	uc003cxg.2	-	9	1137	c.1065C>T	c.(1063-1065)CCC>CCT	p.P355P	MST1_uc011bcs.1_Missense_Mutation_p.P394L|MST1_uc010hkx.2_3'UTR|MST1_uc011bct.1_3'UTR	NM_020998	NP_066278	P26927	HGFL_HUMAN	macrophage stimulating 1 (hepatocyte growth	341	Kringle 3.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		TGAAGCACCAGGGCGCCTCTG	0.677													8	15					0	0	1	0	0
VPRBP	9730	broad.mit.edu	37	3	51475452	51475452	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:51475452G>A	uc003dbe.1	-	8	1143	c.975C>T	c.(973-975)ATC>ATT	p.I325I	VPRBP_uc003dbg.1_Silent_p.I325I	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	325					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		GTCGCTGCTCGATAGCAGGAG	0.433													9	26					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52404799	52404799	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:52404799T>C	uc011bef.1	+	41	6744	c.6483T>C	c.(6481-6483)AGT>AGC	p.S2161S		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2161					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CGGGCATCAGTGGCACCAACG	0.612													5	11					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52420831	52420831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:52420831C>T	uc011bef.1	+	56	9226	c.8965C>T	c.(8965-8967)CCG>TCG	p.P2989S	DNAH1_uc003ddv.2_5'UTR	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2989	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GCTGCAGGACCCGGGCCACTT	0.602													4	7					0	0	1	0	0
CCDC66	285331	broad.mit.edu	37	3	56627593	56627593	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:56627593C>T	uc003dhz.2	+	9	1230	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F	CCDC66_uc003dhy.2_Silent_p.F17F|CCDC66_uc003dhu.2_Silent_p.F347F|CCDC66_uc003dhx.2_RNA	NM_001141947	NP_001135419	A2RUB6	CCD66_HUMAN	coiled-coil domain containing 66 isoform 1	381										breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0478)|Kidney(284;0.0597)|OV - Ovarian serous cystadenocarcinoma(275;0.233)		CTCAGCTGTTCTCTCAGTCAA	0.443													12	26					0	0	1	0	0
PTPRG	5793	broad.mit.edu	37	3	62259508	62259508	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:62259508A>T	uc003dlb.2	+	23	4173	c.3454A>T	c.(3454-3456)AAG>TAG	p.K1152*	PTPRG_uc003dlc.2_Nonsense_Mutation_p.K1123*|PTPRG_uc011bfi.1_Nonsense_Mutation_p.K398*|uc010hno.2_Intron|uc003dld.3_Intron|uc010hnp.2_Intron|uc003dle.3_Intron	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	1152	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		ACGACTGGAAAAGCAATTCAA	0.388													12	34					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64635416	64635416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:64635416G>A	uc003dmg.2	-	10	1534	c.1502C>T	c.(1501-1503)TCC>TTC	p.S501F	ADAMTS9_uc011bfo.1_Missense_Mutation_p.S473F|ADAMTS9_uc003dmh.1_Missense_Mutation_p.S330F|ADAMTS9_uc003dmk.1_Missense_Mutation_p.S501F	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	501					glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GTAGGGTCTGGATTCAGGTTC	0.488													125	396					0	0	1	0	0
FAM19A1	407738	broad.mit.edu	37	3	68466547	68466547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:68466547G>A	uc003dnd.2	+	3	452	c.236G>A	c.(235-237)AGA>AAA	p.R79K	FAM19A1_uc003dne.2_Missense_Mutation_p.R79K|FAM19A1_uc003dng.2_Missense_Mutation_p.R79K	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	79						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		GGAACAACAAGAAACCGGCCT	0.418													16	65					0	0	1	0	0
FAM19A4	151647	broad.mit.edu	37	3	68802049	68802049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:68802049G>A	uc003dnh.1	-	4	694	c.251C>T	c.(250-252)GCG>GTG	p.A84V	FAM19A4_uc003dni.1_Missense_Mutation_p.A84V	NM_182522	NP_872328	Q96LR4	F19A4_HUMAN	family with sequence similarity 19 (chemokine	84						extracellular region				skin(2)	2		Lung NSC(201;0.0198)		BRCA - Breast invasive adenocarcinoma(55;1.38e-05)|Epithelial(33;0.000124)|LUSC - Lung squamous cell carcinoma(21;0.0248)|KIRC - Kidney renal clear cell carcinoma(39;0.0729)|Kidney(39;0.0904)		AGTTGTGCCCGCCACCTGTCC	0.542													23	44					0	0	1	0	0
SHQ1	55164	broad.mit.edu	37	3	72799687	72799687	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:72799687G>A	uc003dpf.2	-	11	1589	c.1482C>T	c.(1480-1482)CCC>CCT	p.P494P	SHQ1_uc010hod.2_Silent_p.P405P	NM_018130	NP_060600	Q6PI26	SHQ1_HUMAN	SHQ1 homolog	494					ribonucleoprotein complex assembly	cytosol|nucleoplasm	protein binding			ovary(2)|large_intestine(1)	3		Prostate(10;0.00482)|Lung NSC(201;0.0339)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;9.68e-05)|Epithelial(33;0.000563)|LUSC - Lung squamous cell carcinoma(21;0.00229)|Lung(16;0.00688)|KIRC - Kidney renal clear cell carcinoma(39;0.018)|Kidney(39;0.0213)		CTTCAAGAAAGGGACCTTGCA	0.473													19	68					0	0	1	0	0
EPHA3	2042	broad.mit.edu	37	3	89390143	89390143	+	Missense_Mutation	SNP	G	A	A	rs142109561	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:89390143G>A	uc003dqy.2	+	4	1117	c.892G>A	c.(892-894)GAA>AAA	p.E298K	EPHA3_uc003dqx.1_Missense_Mutation_p.E298K|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	298	Extracellular (Potential).|Cys-rich.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TTCTACTCAGGAAGATGGTTC	0.463										TSP Lung(6;0.00050)			31	61					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	97311571	97311571	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:97311571G>A	uc010how.1	+	12	2545	c.2502G>A	c.(2500-2502)AGG>AGA	p.R834R	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Silent_p.R200R|EPHA6_uc003drs.3_Silent_p.R226R|EPHA6_uc003drr.3_Silent_p.R226R|EPHA6_uc003drt.2_Silent_p.R226R|EPHA6_uc010hox.1_Intron	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	739	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGCCCCCCAGGATTCCTGCTG	0.507													6	35					0	0	1	0	0
GABRR3	200959	broad.mit.edu	37	3	97731240	97731240	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:97731240C>T	uc011bgr.1	-	4	478	c.478G>A	c.(478-480)GAG>AAG	p.E160K		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	160	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						ATGATATTCTCCATAGTTGTA	0.448													7	49					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98002453	98002453	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:98002453A>T	uc003dsj.1	+	1	722	c.722A>T	c.(721-723)AAA>ATA	p.K241I		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	241	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GGCGTAAGGAAAGCCTTTTCC	0.413													44	37					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98002605	98002605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:98002605C>T	uc003dsj.1	+	1	874	c.874C>T	c.(874-876)CCC>TCC	p.P292S		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TTTGCTAAATCCCATTATCTA	0.328													7	45					0	0	1	0	0
OR5K1	26339	broad.mit.edu	37	3	98188564	98188564	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:98188564G>A	uc003dsm.2	+	1	144	c.144G>A	c.(142-144)CTG>CTA	p.L48L		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	48	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						TGGTGGCACTGATATTTACAC	0.463													73	274					0	0	1	0	0
OR5K1	26339	broad.mit.edu	37	3	98189280	98189280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:98189280C>T	uc003dsm.2	+	1	860	c.860C>T	c.(859-861)CCT>CTT	p.P287L		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						TTACTAAATCCTTTCATTTAT	0.318													31	35					0	0	1	0	0
ZBTB11	27107	broad.mit.edu	37	3	101370483	101370483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:101370483C>T	uc003dve.3	-	11	2919	c.2689G>A	c.(2689-2691)GAT>AAT	p.D897N		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	897	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GATCGGGCATCAGCCCAAGCT	0.433													38	63					0	0	1	0	0
LOC285359	285359	broad.mit.edu	37	3	101432039	101432039	+	RNA	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:101432039T>C	uc003dvj.2	+	1		c.762T>C				NR_002941				Homo sapiens cDNA FLJ12205 fis, clone MAMMA1000931.												0						TGACTGAGGCTACAGCTGCTA	0.423													7	18					0	0	1	0	0
ZPLD1	131368	broad.mit.edu	37	3	102175104	102175104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:102175104G>A	uc003dvs.1	+	11	1277	c.395G>A	c.(394-396)GGA>GAA	p.G132E	ZPLD1_uc003dvt.1_Missense_Mutation_p.G148E|ZPLD1_uc011bhg.1_Missense_Mutation_p.G132E	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	132	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						AATATTTCAGGATATATTGAT	0.358													26	102					0	0	1	0	0
HHLA2	11148	broad.mit.edu	37	3	108076945	108076945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:108076945G>A	uc003dwy.3	+	6	1107	c.940G>A	c.(940-942)GAA>AAA	p.E314K	HHLA2_uc011bhl.1_Missense_Mutation_p.E250K|HHLA2_uc010hpu.2_Missense_Mutation_p.E314K|HHLA2_uc003dwz.2_Missense_Mutation_p.E314K	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	314	Ig-like V-type 2.					integral to membrane				ovary(1)	1						AGACAGTGGGGAATATTTATG	0.363													12	111					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108135742	108135742	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:108135742G>A	uc003dxa.1	-	30	3982	c.3925C>T	c.(3925-3927)CTG>TTG	p.L1309L		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1309	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TGGTTTATCAGAGCCTCCTTC	0.428													19	66					0	0	1	0	0
RETNLB	84666	broad.mit.edu	37	3	108475996	108475996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:108475996G>A	uc003dxh.2	-	1	135	c.37C>T	c.(37-39)CCC>TCC	p.P13S		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	13					cell proliferation	extracellular region	hormone activity			skin(1)	1						TGGAGAAGGGGGATTAGGATG	0.502													25	23					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108682428	108682428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:108682428C>T	uc003dxl.2	-	27	2719	c.2632G>A	c.(2632-2634)GAA>AAA	p.E878K	MORC1_uc011bhn.1_Missense_Mutation_p.E857K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	878					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ATTTTTTTTTCATATTGGACC	0.279													21	23					0	0	1	0	0
PVRL3	25945	broad.mit.edu	37	3	110852551	110852551	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:110852551T>C	uc003dxt.1	+	6	1139	c.1139T>C	c.(1138-1140)CTA>CCA	p.L380P	PVRL3_uc003dxu.1_Intron	NM_015480	NP_056295	Q9NQS3	PVRL3_HUMAN	poliovirus receptor-related 3 precursor	380	Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane	cell adhesion molecule binding|protein homodimerization activity			upper_aerodigestive_tract(2)	2						ATCGAGGATCTAGCAACAGAA	0.448													20	67					0	0	1	0	0
SLC9A10	285335	broad.mit.edu	37	3	111996694	111996694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:111996694G>A	uc003dyu.2	-	5	554	c.332C>T	c.(331-333)TCA>TTA	p.S111L	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Missense_Mutation_p.S111L	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	111	Helical; (Potential).				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						GCCGGGAATTGAAATTAAAAG	0.303													9	40					0	0	1	0	0
DRD3	1814	broad.mit.edu	37	3	113858383	113858383	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:113858383A>C	uc003ebd.2	-	6	1110	c.687T>G	c.(685-687)AGT>AGG	p.S229R	DRD3_uc010hqn.1_Missense_Mutation_p.S229R|DRD3_uc003ebb.1_Missense_Mutation_p.S229R|DRD3_uc003ebc.1_Missense_Mutation_p.S229R	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	229	Cytoplasmic.				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	TGTTGCACTGACTGTTCTGTC	0.532													45	144					0	0	1	0	0
NR1I2	8856	broad.mit.edu	37	3	119528944	119528944	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:119528944C>T	uc003edj.2	+	3	2073	c.234C>T	c.(232-234)CCC>CCT	p.P78P	NR1I2_uc003edi.2_Silent_p.P78P|NR1I2_uc003edk.2_Silent_p.P117P|NR1I2_uc003edl.2_5'Flank	NM_003889	NP_003880	O75469	NR1I2_HUMAN	nuclear receptor subfamily 1, group I, member 2	78	Nuclear receptor.|Bipartite nuclear localization signal.|NR C4-type.				drug export|exogenous drug catabolic process|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid metabolic process|xenobiotic metabolic process|xenobiotic transport	nucleoplasm	drug binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(114;0.175)	Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Rifampin(DB01045)|Vitamin E(DB00163)	TGAGGTGCCCCTTCCGGAAGG	0.692													17	39					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119887107	119887108	+	Missense_Mutation	DNP	GG	AA	AA	rs113424982		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:119887107_119887108GG>AA	uc011bjf.1	-	9	1216_1217	c.1216_1217CC>TT	c.(1216-1218)CCG>TTG	p.P406L	GPR156_uc011bjg.1_Missense_Mutation_p.P402L	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	406	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		GTCCTTGTTCGGGGAAGAGGCA	0.589													24	21					0	0	1	0	0
POLQ	10721	broad.mit.edu	37	3	121256010	121256010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:121256010C>T	uc003eee.3	-	5	806	c.677G>A	c.(676-678)CGA>CAA	p.R226Q		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	226	Helicase ATP-binding.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CAGATACCCTCGGTGAGAGTC	0.388								DNA_polymerases_(catalytic_subunits)					27	40					0	0	1	0	0
HCLS1	3059	broad.mit.edu	37	3	121350723	121350723	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:121350723G>A	uc003eeh.3	-	14	1556	c.1431C>T	c.(1429-1431)TTC>TTT	p.F477F	HCLS1_uc011bjj.1_Silent_p.F440F	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	477	SH3.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		AATTTGCAGGGAAGAGTCCAA	0.532													35	45					0	0	1	0	0
EAF2	55840	broad.mit.edu	37	3	121591510	121591510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:121591510C>T	uc003een.2	+	5	710	c.611C>T	c.(610-612)TCC>TTC	p.S204F	EAF2_uc003eeo.2_Missense_Mutation_p.S74F	NM_018456	NP_060926	Q96CJ1	EAF2_HUMAN	ELL associated factor 2	204	Ser-rich.|Necessary for transactivation activity.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	protein binding				0				GBM - Glioblastoma multiforme(114;0.0972)		GATTGCAAATCCTCTACTTCT	0.398													19	79					0	0	1	0	0
CD86	942	broad.mit.edu	37	3	121822475	121822475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:121822475G>A	uc003eet.2	+	3	297	c.181G>A	c.(181-183)GAA>AAA	p.E61K	CD86_uc011bjo.1_5'UTR|CD86_uc011bjp.1_Intron|CD86_uc003eeu.2_Missense_Mutation_p.E55K	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	61	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	GCAGGACCAGGAAAACTTGGT	0.423													48	46					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121980863	121980863	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:121980863C>T	uc003eev.3	+	4	1353	c.981C>T	c.(979-981)ATC>ATT	p.I327I	CASR_uc003eew.3_Silent_p.I327I	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	327	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTGGGCAGATCCCAGGCTTCC	0.567													23	53					0	0	1	0	0
PARP14	54625	broad.mit.edu	37	3	122414467	122414467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:122414467C>T	uc003efq.3	+	5	852	c.793C>T	c.(793-795)CCT>TCT	p.P265S	PARP14_uc010hrk.2_RNA	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	265					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		TGAATATTTTCCTGAAGAGAG	0.299													7	12					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123008708	123008708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:123008708C>T	uc003egh.1	-	19	3421	c.3421G>A	c.(3421-3423)GAC>AAC	p.D1141N	ADCY5_uc003egg.1_Missense_Mutation_p.D799N	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1141	Cytoplasmic (Potential).|Guanylate cyclase 2.				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CCCACCTTGTCGTAGGTAGAG	0.542													22	70					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	123987692	123987692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:123987692G>A	uc003ehg.2	+	5	680	c.553G>A	c.(553-555)GAA>AAA	p.E185K	KALRN_uc010hrv.1_Missense_Mutation_p.E185K|KALRN_uc003ehf.1_Missense_Mutation_p.E185K|KALRN_uc011bjy.1_Missense_Mutation_p.E185K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	185					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GGAGTGGATCGAACTGCGGCT	0.602													22	42					0	0	1	0	0
MCM2	4171	broad.mit.edu	37	3	127318341	127318341	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:127318341C>A	uc003ejp.2	+	2	244	c.187C>A	c.(187-189)CTG>ATG	p.L63M	MCM2_uc011bkm.1_Translation_Start_Site|MCM2_uc010hsl.2_RNA	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	63	Interaction with MYST2 (By similarity).				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						AGAGGGGCCCCTGGAGGAAGA	0.577													4	86					1	1	1	1	0
PLXND1	23129	broad.mit.edu	37	3	129290360	129290360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:129290360C>T	uc003emx.2	-	17	3428	c.3328G>A	c.(3328-3330)GAG>AAG	p.E1110K		NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1110	Extracellular (Potential).|IPT/TIG 3.				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						ACCGTGGGCTCCCGGCCAATG	0.647													53	50					0	0	1	0	0
LOC729375	729375	broad.mit.edu	37	3	129817239	129817239	+	RNA	SNP	C	G	G	rs142691368	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:129817239C>G	uc003ene.2	-	3		c.1272G>C			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						CCCCAGGGCCCCTGCTGTCCT	0.587													6	21					0	0	1	0	0
LOC729375	729375	broad.mit.edu	37	3	129830228	129830228	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:129830228G>A	uc011ble.1	-	1		c.49C>T				NR_024252				Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						ACCTGCCAGGGGAAGGAGCGC	0.706													4	3					0	0	1	0	0
NEK11	79858	broad.mit.edu	37	3	130748605	130748605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:130748605C>T	uc003eny.2	+	3	379	c.53C>T	c.(52-54)TCC>TTC	p.S18F	NEK11_uc003enx.2_Missense_Mutation_p.S18F|NEK11_uc003eoa.2_Missense_Mutation_p.S18F|NEK11_uc003enz.2_5'UTR|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_5'UTR|NEK11_uc011bll.1_Missense_Mutation_p.S18F|NEK11_uc003enw.1_Missense_Mutation_p.S18F|NEK11_uc011blm.1_Missense_Mutation_p.S18F|ASTE1_uc010htm.1_5'Flank|ASTE1_uc003env.1_5'Flank|ASTE1_uc011blj.1_5'Flank	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	18					cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						ACAGCCATTTCCACTTATCCA	0.403													24	39					0	0	1	0	0
NEK11	79858	broad.mit.edu	37	3	130873927	130873927	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:130873927G>A	uc003eny.2	+	10	1250	c.924G>A	c.(922-924)TTG>TTA	p.L308L	NEK11_uc003enx.2_Silent_p.L308L|NEK11_uc003eoa.2_Silent_p.L308L|NEK11_uc003enz.2_Silent_p.L126L|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_Silent_p.L160L|NEK11_uc011bll.1_Intron|NEK11_uc011blm.1_Silent_p.L308L	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	308					cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						ACAAAAATTTGGATTGTCAGA	0.333													13	26					0	0	1	0	0
CPNE4	131034	broad.mit.edu	37	3	131624125	131624125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:131624125G>A	uc003eok.2	-	2	598	c.163C>T	c.(163-165)CAT>TAT	p.H55Y	CPNE4_uc011blq.1_Missense_Mutation_p.H73Y|CPNE4_uc003eol.2_Missense_Mutation_p.H73Y|CPNE4_uc003eom.2_Missense_Mutation_p.H55Y	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	55	C2 1.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CACTGCCCATGAGACTGCATC	0.473													33	99					0	0	1	0	0
DNAJC13	23317	broad.mit.edu	37	3	132172289	132172289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:132172289G>A	uc003eor.2	+	7	750	c.685G>A	c.(685-687)GAT>AAT	p.D229N	DNAJC13_uc010htq.1_Missense_Mutation_p.D229N|DNAJC13_uc003eos.1_5'Flank	NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	229							heat shock protein binding			ovary(1)|breast(1)	2						ATACAGCACTGATGAATCCAT	0.363													22	42					0	0	1	0	0
NPHP3	27031	broad.mit.edu	37	3	132438567	132438567	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:132438567T>C	uc003epe.1	-	2	578	c.501A>G	c.(499-501)AAA>AAG	p.K167K	NCRNA00119_uc003epg.1_5'Flank|NPHP3_uc003epf.1_5'UTR|NCRNA00119_uc010htu.1_5'Flank	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	167	Potential.				maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						GCCTTTTAACTTTATCTCTGT	0.303													19	51					0	0	1	0	0
TF	7018	broad.mit.edu	37	3	133475778	133475778	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:133475778C>T	uc003epu.1	+	12	2523	c.795C>T	c.(793-795)GTC>GTT	p.V265V	TF_uc011blt.1_Silent_p.V138V|TF_uc003epw.1_Intron|TF_uc003epv.1_Silent_p.V265V	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	265	Transferrin-like 1.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	TGGCCCAGGTCCCTTCTCATA	0.582													27	99					0	0	1	0	0
TF	7018	broad.mit.edu	37	3	133478170	133478170	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:133478170C>T	uc003epu.1	+	14	2928	c.1200C>T	c.(1198-1200)ATC>ATT	p.I400I	TF_uc011blt.1_Silent_p.I273I|TF_uc003epw.1_Intron|TF_uc003epv.1_Silent_p.I400I	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	400	Transferrin-like 2.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	TCGCCAAGATCATGGTATGTC	0.532													47	55					0	0	1	0	0
PPP2R3A	5523	broad.mit.edu	37	3	135720944	135720944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:135720944C>T	uc003eqv.1	+	2	1169	c.604C>T	c.(604-606)CTT>TTT	p.L202F	PPP2R3A_uc011blz.1_Intron	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	202					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						TTCCATGTTTCTTCAAAACTT	0.388													13	61					0	0	1	0	0
CHST2	9435	broad.mit.edu	37	3	142840619	142840619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:142840619C>T	uc003evm.2	+	2	1850	c.961C>T	c.(961-963)CCG>TCG	p.P321S		NM_004267	NP_004258	Q9Y4C5	CHST2_HUMAN	carbohydrate (N-acetylglucosamine-6-O)	321	Lumenal (Potential).				inflammatory response|multicellular organismal development|N-acetylglucosamine metabolic process|sulfur compound metabolic process	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity			ovary(3)	3						GCTGCGAGACCCGGCCCTGGA	0.652													5	14					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147113820	147113820	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:147113820G>A	uc003ewd.1	-	3	780	c.507C>T	c.(505-507)GCC>GCT	p.A169A	ZIC4_uc003ewc.1_Silent_p.A99A|ZIC4_uc011bno.1_Silent_p.A219A	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	169						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						AAATGTGGTTGGCCTGTTCCG	0.602													43	203					0	0	1	0	0
CPA3	1359	broad.mit.edu	37	3	148596485	148596485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:148596485C>T	uc003ewm.2	+	5	476	c.424C>T	c.(424-426)CGT>TGT	p.R142C		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	142					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			AATGGTCTCTCGTATTAAAAT	0.294													46	73					0	0	1	0	0
TSC22D2	9819	broad.mit.edu	37	3	150127378	150127379	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:150127378_150127379CC>TT	uc003exv.2	+	1	591_592	c.241_242CC>TT	c.(241-243)CCC>TTC	p.P81F	TSC22D2_uc003exw.2_RNA|TSC22D2_uc003exx.2_Missense_Mutation_p.P81F	NM_014779	NP_055594	O75157	T22D2_HUMAN	TSC22 domain family, member 2	81							sequence-specific DNA binding transcription factor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			TGCGGAGACTCCCGGGACCGTC	0.634													9	31					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	150911423	150911423	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:150911423A>G	uc003eyp.2	+	14	2153	c.2115A>G	c.(2113-2115)TTA>TTG	p.L705L	MED12L_uc011bnz.1_Silent_p.L565L|MED12L_uc003eyn.2_Silent_p.L740L|MED12L_uc003eyo.2_Silent_p.L705L	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	705					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTCGCCACTTACAGTATGCAA	0.368													37	52					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151156282	151156282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:151156282C>T	uc011bod.1	-	6	6067	c.6067G>A	c.(6067-6069)GGG>AGG	p.G2023R	IGSF10_uc011bob.1_Missense_Mutation_p.G50R|IGSF10_uc011boc.1_Missense_Mutation_p.G2R	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2023	Ig-like C2-type 6.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGATCATCCCCCATTTTGTTT	0.433													19	80					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151166011	151166011	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:151166011G>A	uc011bod.1	-	4	1758	c.1758C>T	c.(1756-1758)TTC>TTT	p.F586F		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	586	Ig-like C2-type 2.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTTCACCAATGAAAACTGTGT	0.413													22	62					0	0	1	0	0
AADACL2	344752	broad.mit.edu	37	3	151475038	151475038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:151475038C>T	uc003ezc.2	+	5	982	c.862C>T	c.(862-864)CCT>TCT	p.P288S	AADACL2_uc010hvn.2_Missense_Mutation_p.P75S	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	288						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TATTCTTCTTCCTGAGAAGTA	0.408													18	64					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154055547	154055547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:154055547C>T	uc003faa.2	-	4	2237	c.2137G>A	c.(2137-2139)GAA>AAA	p.E713K		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	713	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			AACTGGATTTCCTCCTGGTAG	0.423													39	171					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154139180	154139180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:154139180G>A	uc003faa.2	-	3	1371	c.1271C>T	c.(1270-1272)TCC>TTC	p.S424F		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	424	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			ATAGAATATGGAATTTTCATC	0.333													27	74					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155212159	155212159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:155212159G>A	uc011bok.1	-	15	2283	c.2006C>T	c.(2005-2007)CCT>CTT	p.P669L	PLCH1_uc011boj.1_Missense_Mutation_p.P669L|PLCH1_uc011bol.1_Missense_Mutation_p.P651L	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	669	PI-PLC Y-box.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GTAGGGGAGAGGGTTGAAGTT	0.458													10	56					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164714552	164714552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:164714552C>T	uc003fei.2	-	39	4611	c.4549G>A	c.(4549-4551)GAA>AAA	p.E1517K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1517	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AGACTAAATTCCATCATACCT	0.179										HNSCC(35;0.089)			2	0					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164785148	164785148	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:164785148C>T	uc003fei.2	-	6	677	c.615G>A	c.(613-615)AGG>AGA	p.R205R		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	205	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CGTTGCTTTTCCTAATAACTT	0.308										HNSCC(35;0.089)			16	63					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164786619	164786619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:164786619C>T	uc003fei.2	-	5	436	c.374G>A	c.(373-375)GGA>GAA	p.G125E		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	125	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GGCTTCAACTCCTTAAAGAAT	0.303										HNSCC(35;0.089)			15	60					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906576	164906576	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:164906576C>T	uc003fej.3	-	2	2487	c.2043G>A	c.(2041-2043)AGG>AGA	p.R681R	SLITRK3_uc003fek.2_Silent_p.R681R	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	681	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						TCTTTCGACGCCTTCGGAGCA	0.507										HNSCC(40;0.11)			34	31					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	166960300	166960300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:166960300C>T	uc003fep.2	-	20	2592	c.2269G>A	c.(2269-2271)GAA>AAA	p.E757K	ZBBX_uc011bpc.1_Missense_Mutation_p.E796K|ZBBX_uc003feq.2_Missense_Mutation_p.E728K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	757						intracellular	zinc ion binding			ovary(2)	2						TACCTCAATTCCTCAACTCCA	0.353													37	39					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	167016198	167016198	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:167016198G>A	uc003fep.2	-	18	2097	c.1774C>T	c.(1774-1776)CAA>TAA	p.Q592*	ZBBX_uc011bpc.1_Nonsense_Mutation_p.Q592*|ZBBX_uc003feq.2_Nonsense_Mutation_p.Q563*	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	592						intracellular	zinc ion binding			ovary(2)	2						TCAAGTCCTTGATATTGTTTT	0.299													19	88					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644401	169644401	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:169644401G>A	uc003fgd.2	+	6	618	c.351G>A	c.(349-351)AAG>AAA	p.K117K	SAMD7_uc003fge.2_Silent_p.K117K|SAMD7_uc011bpo.1_Silent_p.K18K	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	117										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			TTAATCCCAAGGGACTAGCAG	0.478													17	51					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644946	169644946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:169644946C>T	uc003fgd.2	+	6	1163	c.896C>T	c.(895-897)CCA>CTA	p.P299L	SAMD7_uc003fge.2_Missense_Mutation_p.P299L|SAMD7_uc011bpo.1_Missense_Mutation_p.P200L	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	299										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GTTTGCCCTCCAGTTCCTCGA	0.512													22	75					0	0	1	0	0
PRKCI	5584	broad.mit.edu	37	3	169988339	169988339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:169988339C>T	uc003fgs.2	+	6	819	c.581C>T	c.(580-582)TCT>TTT	p.S194F		NM_002740	NP_002731	P41743	KPCI_HUMAN	protein kinase C, iota	194	Regulatory domain.				anti-apoptosis|cellular membrane organization|cellular response to insulin stimulus|establishment or maintenance of epithelial cell apical/basal polarity|intracellular signal transduction|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|protein targeting to membrane|secretion|tight junction assembly|vesicle-mediated transport	cytosol|endosome|nucleus|polarisome	ATP binding|phospholipid binding|protein binding|protein kinase C activity|zinc ion binding			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(22;6.45e-23)|all_epithelial(15;8.52e-28)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			GGGCGGCATTCTTTGCCACAG	0.398													10	43					0	0	1	0	0
KLHL6	89857	broad.mit.edu	37	3	183245701	183245701	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:183245701A>T	uc003flr.2	-	2	449	c.391T>A	c.(391-393)TAC>AAC	p.Y131N	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Missense_Mutation_p.Y129N	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	131	BTB.									haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			TTGCTGGTGTACGTGTAGTCC	0.493													35	35					0	0	1	0	0
PSMD2	5708	broad.mit.edu	37	3	184026631	184026631	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:184026631C>T	uc003fnn.1	+	21	2713	c.2680C>T	c.(2680-2682)CTG>TTG	p.L894L	PSMD2_uc011brj.1_Silent_p.L735L|PSMD2_uc011brk.1_Silent_p.L764L	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	894					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	TACCCCCATTCTGGAAGGTTT	0.517											OREG0015948	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	101	150					0	0	1	0	0
EIF4G1	1981	broad.mit.edu	37	3	184041377	184041377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:184041377C>T	uc003fnp.2	+	15	2468	c.2270C>T	c.(2269-2271)ACC>ATC	p.T757I	EIF4G1_uc003fno.1_Missense_Mutation_p.T698I|EIF4G1_uc010hxw.1_Missense_Mutation_p.T593I|EIF4G1_uc003fnt.2_Missense_Mutation_p.T468I|EIF4G1_uc003fnq.2_Missense_Mutation_p.T670I|EIF4G1_uc003fnr.2_Missense_Mutation_p.T593I|EIF4G1_uc010hxx.2_Missense_Mutation_p.T764I|EIF4G1_uc003fns.2_Missense_Mutation_p.T717I|EIF4G1_uc010hxy.2_Missense_Mutation_p.T764I|EIF4G1_uc003fnv.3_Missense_Mutation_p.T758I|EIF4G1_uc003fnu.3_Missense_Mutation_p.T757I|EIF4G1_uc003fnw.2_Missense_Mutation_p.T764I|EIF4G1_uc003fnx.2_Missense_Mutation_p.T562I|EIF4G1_uc003fny.3_Missense_Mutation_p.T561I|SNORD66_uc003fnz.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	757	eIF3/EIF4A-binding.|MIF4G.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGCAGCAAAACCCAGGTACTG	0.493													15	72					0	0	1	0	0
FAM131A	131408	broad.mit.edu	37	3	184060569	184060569	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:184060569C>T	uc003fog.2	+	2	1817	c.453C>T	c.(451-453)CTC>CTT	p.L151L	FAM131A_uc003fob.1_Silent_p.L59L|FAM131A_uc003foc.2_Silent_p.L97L|FAM131A_uc003foe.2_Silent_p.L97L	NM_144635	NP_653236	Q6UXB0	F131A_HUMAN	hypothetical protein LOC131408 precursor	151						extracellular region				breast(1)	1	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AAGCCAAGCTCCGAGCATGGT	0.557													14	52					0	0	1	0	0
DNAJB11	51726	broad.mit.edu	37	3	186293723	186293723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:186293723C>T	uc003fqi.2	+	3	540	c.320C>T	c.(319-321)TCA>TTA	p.S107L		NM_016306	NP_057390	Q9UBS4	DJB11_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 11	107					protein folding	endoplasmic reticulum lumen	heat shock protein binding			ovary(1)|lung(1)	2	all_cancers(143;2.84e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.44e-20)	GBM - Glioblastoma multiforme(93;0.0476)		GACATTTTTTCACAGTGAGTA	0.398													15	31					0	0	1	0	0
HRG	3273	broad.mit.edu	37	3	186387769	186387769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:186387769G>A	uc003fqq.2	+	3	366	c.343G>A	c.(343-345)GAA>AAA	p.E115K		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	115	Cystatin 1.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		ACATTCCCATGAATCTCAGGA	0.393													34	48					0	0	1	0	0
HRG	3273	broad.mit.edu	37	3	186395141	186395141	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:186395141C>T	uc003fqq.2	+	7	1070	c.1047C>T	c.(1045-1047)CTC>CTT	p.L349L		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	349					fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		CCAGTGACCTccatccccata	0.224													36	42					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189455613	189455613	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:189455613C>T	uc003fry.2	+	2	236	c.147C>T	c.(145-147)TTC>TTT	p.F49F	TP63_uc003frx.2_Silent_p.F49F|TP63_uc003frz.2_Silent_p.F49F|TP63_uc010hzc.1_Silent_p.F49F	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	49	Transcription activation.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CAAATGAATTCCTCAGTCCAG	0.388									Hay-Wells_syndrome	HNSCC(45;0.13)			36	46					0	0	1	0	0
CPN2	1370	broad.mit.edu	37	3	194062955	194062955	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:194062955G>A	uc003fts.2	-	2	567	c.477C>T	c.(475-477)GCC>GCT	p.A159A		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	159	LRR 3.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		TCCTGGGCAGGGCCTGGAGCT	0.632													30	25					0	0	1	0	0
TNK2	10188	broad.mit.edu	37	3	195605354	195605354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:195605354C>T	uc003fvu.1	-	8	1667	c.1124G>A	c.(1123-1125)AGA>AAA	p.R375K	TNK2_uc003fvs.1_Missense_Mutation_p.R407K|TNK2_uc003fvt.1_Missense_Mutation_p.R438K|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_Missense_Mutation_p.R205K	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	375	Protein kinase.			Missing (in Ref. 4; AAH08884).	positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	AAACGTGGGTCTGTCCTCTGG	0.642													60	76					0	0	1	0	0
PCYT1A	5130	broad.mit.edu	37	3	195968946	195968946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:195968946G>A	uc003fwg.2	-	8	754	c.581C>T	c.(580-582)ACA>ATA	p.T194I	PCYT1A_uc003fwh.2_Missense_Mutation_p.T194I	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	194	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	TGTCCTCTGTGTTGGAGCAAA	0.468													27	86					0	0	1	0	0
PAK2	5062	broad.mit.edu	37	3	196533475	196533475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:196533475C>T	uc003fwy.3	+	6	816	c.494C>T	c.(493-495)CCC>CTC	p.P165L		NM_002577	NP_002568	Q13177	PAK2_HUMAN	p21-activated kinase 2	165					axon guidance|cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of apoptosis|regulation of defense response to virus by virus|regulation of growth|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|nucleus|perinuclear region of cytoplasm|plasma membrane	ATP binding|identical protein binding|protein kinase binding|protein serine/threonine kinase activity|protein tyrosine kinase activator activity			ovary(1)|lung(1)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;6.38e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00405)		ACAGAAGCACCCGCAGTAGTG	0.488													23	47					0	0	1	0	0
LRCH3	84859	broad.mit.edu	37	3	197557648	197557648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:197557648G>A	uc011bul.1	+	7	900	c.895G>A	c.(895-897)GAA>AAA	p.E299K	LRCH3_uc003fyj.1_Missense_Mutation_p.E299K|LRCH3_uc011bum.1_Missense_Mutation_p.E299K|LRCH3_uc011bun.1_Missense_Mutation_p.E173K|LRCH3_uc003fyk.2_5'UTR	NM_032773	NP_116162	Q96II8	LRCH3_HUMAN	leucine-rich repeats and calponin homology (CH)	299						extracellular region				ovary(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;4.82e-24)|all cancers(36;3.61e-22)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.119)		CAGCCATGAAGAACTGTACTC	0.353													25	80					0	0	1	0	0
ZNF595	152687	broad.mit.edu	37	4	59328	59328	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:59328C>T	uc003fzv.1	+	2	165	c.9C>T	c.(7-9)CTC>CTT	p.L3L	ZNF595_uc003fzu.1_RNA|ZNF718_uc003fzt.3_Silent_p.L3L|ZNF595_uc010iay.1_RNA|ZNF595_uc011bus.1_5'UTR|ZNF595_uc011but.1_Intron	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	3					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		TTCAGGAACTCGTAACATTCA	0.403													29	381					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	657903	657903	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:657903G>A	uc003gap.2	+	17	2075	c.2022G>A	c.(2020-2022)AAG>AAA	p.K674K	PDE6B_uc003gao.3_Silent_p.K674K|PDE6B_uc011buy.1_Silent_p.K395K|PDE6B_uc011buz.1_Silent_p.K106K	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	674					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						CTGGGTTCAGGAAGAGAGCGA	0.622													27	49					0	0	1	0	0
POLN	353497	broad.mit.edu	37	4	2083449	2083449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:2083449C>T	uc003ger.2	-	20	2219	c.2219G>A	c.(2218-2220)GGC>GAC	p.G740D	POLN_uc010icg.1_Missense_Mutation_p.G188D|POLN_uc010ich.1_Missense_Mutation_p.G272D	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	740					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			TCTCCTTCTGCCCATGATGGA	0.582								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					6	28					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3215735	3215735	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:3215735C>T	uc011bvq.1	+	51	6976	c.6831C>T	c.(6829-6831)CTC>CTT	p.L2277L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2275					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GTCTGGATCTCCAGGCAGGGC	0.597													20	37					0	0	1	0	0
CRMP1	1400	broad.mit.edu	37	4	5868472	5868472	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:5868472G>A	uc003gip.2	-	3	152	c.51C>T	c.(49-51)CTC>CTT	p.L17L	CRMP1_uc003gin.1_5'UTR|CRMP1_uc003giq.2_Silent_p.L17L|CRMP1_uc003gir.2_Silent_p.L12L|CRMP1_uc003gis.2_Silent_p.L131L	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	17					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		CTTTGATGAGGAGTCGGTCAC	0.383													15	44					0	0	1	0	0
TADA2B	93624	broad.mit.edu	37	4	7056043	7056043	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:7056043C>T	uc003gjw.3	+	2	676	c.525C>T	c.(523-525)ATC>ATT	p.I175I	TADA2B_uc010idi.2_Silent_p.I100I	NM_152293	NP_689506	Q86TJ2	TAD2B_HUMAN	transcriptional adaptor 2 (ADA2 homolog,	175					regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|zinc ion binding				0						ATTACGAGATCGAGTATGACC	0.617													12	18					0	0	1	0	0
AFAP1	60312	broad.mit.edu	37	4	7787987	7787987	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:7787987G>A	uc003gkg.1	-	12	1737	c.1464C>T	c.(1462-1464)TCC>TCT	p.S488S	AFAP1_uc011bwk.1_Silent_p.S488S	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	488						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						CATAGCCGTTGGAGGTGCCCC	0.483													41	83					0	0	1	0	0
ABLIM2	84448	broad.mit.edu	37	4	7985003	7985003	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:7985003C>T	uc003gko.2	-	19	1853	c.1710G>A	c.(1708-1710)CGG>CGA	p.R570R	ABLIM2_uc003gkk.2_Silent_p.R195R|ABLIM2_uc003gkl.2_Silent_p.R298R|ABLIM2_uc003gkj.3_Silent_p.R604R|ABLIM2_uc003gkm.3_Silent_p.R518R|ABLIM2_uc003gkp.2_Silent_p.R490R|ABLIM2_uc003gkq.2_Silent_p.R531R|ABLIM2_uc003gkr.2_Silent_p.R480R|ABLIM2_uc003gki.2_RNA	NM_001130084	NP_001123556	Q6H8Q1	ABLM2_HUMAN	actin binding LIM protein family, member 2	570	HP.				axon guidance|cytoskeleton organization	actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus	actin binding|zinc ion binding			pancreas(3)	3						CCAGTCTCGTCCGGTCCACGT	0.597													6	12					0	0	1	0	0
ABLIM2	84448	broad.mit.edu	37	4	8009875	8009875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:8009875G>A	uc003gko.2	-	15	1570	c.1427C>T	c.(1426-1428)TCT>TTT	p.S476F	ABLIM2_uc003gkk.2_Missense_Mutation_p.S140F|ABLIM2_uc003gkl.2_Missense_Mutation_p.S204F|ABLIM2_uc003gkj.3_Missense_Mutation_p.S510F|ABLIM2_uc003gkm.3_Missense_Mutation_p.S424F|ABLIM2_uc003gkp.2_Missense_Mutation_p.S435F|ABLIM2_uc003gkq.2_Missense_Mutation_p.S476F|ABLIM2_uc003gkr.2_Missense_Mutation_p.S425F|ABLIM2_uc003gks.3_Missense_Mutation_p.S436F|MIR95_hsa-mir-95|MI0000097_5'Flank	NM_001130084	NP_001123556	Q6H8Q1	ABLM2_HUMAN	actin binding LIM protein family, member 2	476					axon guidance|cytoskeleton organization	actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus	actin binding|zinc ion binding			pancreas(3)	3						CAGGTCTGGAGAATTGGTCCT	0.532													33	62					0	0	1	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229590	8229591	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:8229590_8229591CC>TT	uc003gkv.3	+	12	2270_2271	c.2169_2170CC>TT	c.(2167-2172)CCCCAC>CCTTAC	p.H724Y	SH3TC1_uc003gkw.3_Missense_Mutation_p.H648Y|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	724							binding			large_intestine(2)|pancreas(1)	3						AGTGCCTGCCCCACCTGGTGCT	0.653													22	54					0	0	1	0	0
SH3TC1	54436	broad.mit.edu	37	4	8239372	8239372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:8239372G>A	uc003gkv.3	+	17	3829	c.3728G>A	c.(3727-3729)GGT>GAT	p.G1243D	SH3TC1_uc003gkw.3_Missense_Mutation_p.G1167D|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	1243							binding			large_intestine(2)|pancreas(1)	3						CTGGTGCTCGGTGACATCATC	0.617													9	26					0	0	1	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13338968	13338968	+	RNA	SNP	G	A	A	rs61751720	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:13338968G>A	uc003gms.2	+	1		c.3932G>A				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						AGCCTATTTGGACCAGAAACA	0.303													10	18					0	0	1	0	0
BOD1L	259282	broad.mit.edu	37	4	13621619	13621619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:13621619G>A	uc003gmz.1	-	2	433	c.316C>T	c.(316-318)CCG>TCG	p.P106S	BOD1L_uc010idr.1_5'UTR|BOD1L_uc010ids.1_RNA	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	106							DNA binding			ovary(5)|breast(1)	6						TTGAGATGCGGACTCCATGTG	0.418													6	20					0	0	1	0	0
BST1	683	broad.mit.edu	37	4	15717353	15717353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:15717353C>T	uc003goh.3	+	6	830	c.635C>T	c.(634-636)CCA>CTA	p.P212L	BST1_uc003goi.2_Missense_Mutation_p.P23L	NM_004334	NP_004325	Q10588	BST1_HUMAN	bone marrow stromal cell antigen 1 precursor	212					humoral immune response|multicellular organismal development	anchored to membrane|extrinsic to membrane|plasma membrane	binding|NAD+ nucleosidase activity			central_nervous_system(1)	1						TATGAAATTCCAAACCTCCAG	0.333													11	26					0	0	1	0	0
KCNIP4	80333	broad.mit.edu	37	4	21305468	21305468	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:21305468A>T	uc003gqf.1	-	1	62	c.62T>A	c.(61-63)TTA>TAA	p.L21*	KCNIP4_uc003gqg.1_Intron|KCNIP4_uc003gqh.1_Intron|KCNIP4_uc003gqi.1_Intron	NM_147183	NP_671712	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 4	Error:Variant_position_missing_in_Q6PIL6_after_alignment						plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				CTGTTCCAATAATTTAACAAA	0.408													13	29					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23815460	23815461	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:23815460_23815461TC>AT	uc003gqs.2	-	8	1765_1766	c.1645_1646GA>AT	c.(1645-1647)GAT>ATT	p.D549I	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	549					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TGACACAGAATCTCTACATGGA	0.446													19	37					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25664129	25664129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:25664129C>T	uc003grr.2	+	2	88	c.7C>T	c.(7-9)CCC>TCC	p.P3S	SLC34A2_uc003grs.2_Missense_Mutation_p.P3S|SLC34A2_uc010iev.2_Missense_Mutation_p.P3S	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	3	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				GACCATGGCTCCCTGGCCTGA	0.532													14	27					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25677928	25677928	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:25677928G>A	uc003grr.2	+	13	1711	c.1630G>A	c.(1630-1632)GTG>ATG	p.V544M	SLC34A2_uc003grs.2_Missense_Mutation_p.V543M|SLC34A2_uc010iev.2_Missense_Mutation_p.V543M	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	544	Helical; Name=M7; (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				CCCGCTGACGGTGTTTGGCCT	0.607													59	98					0	0	1	0	0
TBC1D1	23216	broad.mit.edu	37	4	38117331	38117331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:38117331G>A	uc003gtb.2	+	16	2901	c.2558G>A	c.(2557-2559)GGG>GAG	p.G853E	TBC1D1_uc011byd.1_Missense_Mutation_p.G947E|TBC1D1_uc010ifd.2_Missense_Mutation_p.G640E	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	853	Rab-GAP TBC.					nucleus	Rab GTPase activator activity			ovary(1)	1						CTTTTCACAGGGCGAACCTTT	0.388													17	57					0	0	1	0	0
KLHL5	51088	broad.mit.edu	37	4	39064637	39064637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:39064637C>T	uc003gts.2	+	1	578	c.503C>T	c.(502-504)TCT>TTT	p.S168F	KLHL5_uc003gtp.2_Missense_Mutation_p.S122F|KLHL5_uc003gtq.2_Intron|KLHL5_uc003gtr.1_Missense_Mutation_p.S168F|KLHL5_uc003gtt.2_Missense_Mutation_p.S168F	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1	168						cytoplasm|cytoskeleton	actin binding			ovary(1)	1						GAAAATGAATCTGATTCCAGT	0.373													29	64					0	0	1	0	0
NSUN7	79730	broad.mit.edu	37	4	40763260	40763260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:40763260C>T	uc003gvj.3	+	4	925	c.430C>T	c.(430-432)CTT>TTT	p.L144F	NSUN7_uc003gvh.2_Missense_Mutation_p.L144F|NSUN7_uc003gvi.3_Missense_Mutation_p.L144F	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						AACTCGTGTCCTTTCTGATAA	0.318													33	64					0	0	1	0	0
NSUN7	79730	broad.mit.edu	37	4	40778152	40778152	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:40778152G>A	uc003gvj.3	+	7	1407	c.912G>A	c.(910-912)TGG>TGA	p.W304*	NSUN7_uc003gvi.3_Nonsense_Mutation_p.W304*	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						CAGGCTCATGGTACACAGTTT	0.368													6	34					0	0	1	0	0
DCAF4L1	285429	broad.mit.edu	37	4	41984415	41984415	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:41984415A>G	uc003gwk.2	+	1	703	c.606A>G	c.(604-606)GCA>GCG	p.A202A		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	202										skin(1)	1						GCTTTAGTGCAGGCTTGTCTC	0.567													52	96					0	0	1	0	0
BEND4	389206	broad.mit.edu	37	4	42119643	42119643	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:42119643C>T	uc003gwn.2	-	6	2077	c.1497G>A	c.(1495-1497)GCG>GCA	p.A499A	BEND4_uc003gwm.2_3'UTR	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	499											0						AAGTCCCCACCGCCCGCCCCT	0.542													8	9					0	0	1	0	0
BEND4	389206	broad.mit.edu	37	4	42145655	42145655	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:42145655G>A	uc003gwn.2	-	3	1424	c.844C>T	c.(844-846)CTG>TTG	p.L282L	BEND4_uc003gwm.2_Silent_p.L282L|BEND4_uc011byy.1_Silent_p.L282L	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	282											0						GAGGTTGACAGAGGATCCACG	0.498													11	17					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42448649	42448649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:42448649C>T	uc003gwr.2	-	31	3141	c.2909G>A	c.(2908-2910)GGA>GAA	p.G970E	ATP8A1_uc003gwq.2_Missense_Mutation_p.G196E|ATP8A1_uc003gws.2_Missense_Mutation_p.G955E	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	970	Extracellular (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TTTCCCATTTCCAAATGCAGT	0.398													11	35					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46060539	46060539	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:46060539C>T	uc003gxb.2	-	6	878	c.726G>A	c.(724-726)GGG>GGA	p.G242G		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	242	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		AGTTCCGTAACCCTACAAATG	0.333													8	27					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47663828	47663828	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:47663828C>T	uc003gxm.2	-	12	1728	c.1635G>A	c.(1633-1635)GGG>GGA	p.G545G	CORIN_uc011bzf.1_Silent_p.G406G|CORIN_uc011bzg.1_Silent_p.G478G|CORIN_uc011bzh.1_Silent_p.G508G|CORIN_uc011bzi.1_Silent_p.G508G	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	545	Extracellular (Potential).|FZ 2.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						GGCCCACAATCCCAAGAACAG	0.433													16	27					0	0	1	0	0
NFXL1	152518	broad.mit.edu	37	4	47857177	47857177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:47857177G>A	uc010igh.2	-	20	2497	c.2320C>T	c.(2320-2322)CCT>TCT	p.P774S	NFXL1_uc003gxo.2_Missense_Mutation_p.P99S|NFXL1_uc003gxp.2_Missense_Mutation_p.P774S|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.P774S	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	774						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TGACCACAAGGAAGCTAAAAT	0.348													14	42					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49032892	49032892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:49032892G>A	uc003gyv.2	+	11	1605	c.1423G>A	c.(1423-1425)GGG>AGG	p.G475R	CWH43_uc011bzl.1_Missense_Mutation_p.G448R	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	475					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						GCCCTATATGGGGAACAATGA	0.418													32	86					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52943113	52943113	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:52943113C>T	uc003gzl.2	+	7	1205	c.927C>T	c.(925-927)TCC>TCT	p.S309S	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Silent_p.S277S|SPATA18_uc003gzk.1_Silent_p.S309S	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	309	Ser-rich.				mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			TCAGCGATTCCTATTCCCAGG	0.632													12	26					0	0	1	0	0
KIT	3815	broad.mit.edu	37	4	55593610	55593610	+	Missense_Mutation	SNP	T	C	C	rs121913517		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:55593610T>C	uc010igr.2	+	11	1763	c.1676T>C	c.(1675-1677)GTT>GCT	p.V559A	KIT_uc010igs.2_Missense_Mutation_p.V555A|KIT_uc010igt.1_Missense_Mutation_p.V8A	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	559	Cytoplasmic (Potential).		Missing (in GIST; somatic mutation).|V -> D (in GIST; somatic mutation).|V -> A (in GIST).|Missing (in GIST).		male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity	p.V559D(142)|p.V559A(52)|p.V559del(38)|p.W557_E561del(36)|p.V559G(33)|p.W557_V559>F(29)|p.W557_V559>C(24)|p.K558_V559del(18)|p.K558_E562del(16)|p.V559_E561del(15)|p.K558_V560del(13)|p.K558_V560>N(12)|p.W557_V560>C(11)|p.K558_G565>R(11)|p.V559_G565del(11)|p.W557_V559del(11)|p.Q556_V560del(10)|p.V559_V560del(9)|p.K558_D572del(9)|p.V555_V559del(8)|p.K558_V559>N(8)|p.Q556_V559>H(7)|p.W557_Q575del(6)|p.Q556_V560>H(6)|p.V559_T574del(6)|p.K558_I563del(5)|p.M552_V559>I(5)|p.V559I(5)|p.Q556_D572del(5)|p.Q556_V559del(5)|p.E554_V559del(5)|p.K558_V560>I(5)|p.Q556_V559>HT(5)|p.W557_V560>F(4)|p.V555_P573del(4)|p.V555_I571del(4)|p.W557_V560del(4)|p.M552_D572del(4)|p.V555_V560del(4)|p.K550_V559del(3)|p.Q556_D572>H(3)|p.Y553_T574>S(3)|p.E554_D572>A(3)|p.Q556_L576del(3)|p.W557_E562del(3)|p.V555_D572del(3)|p.P551_V559del(3)|p.K558_V559>I(3)|p.Q556_T574del(3)|p.K558_E561del(3)|p.Y553_E561>LK(2)|p.M552_E561>K(2)|p.W557_T574del(2)|p.V559_D572del(2)|p.W557_P573>S(2)|p.V559F(2)|p.P551_V569del(2)|p.K558_V559>SS(2)|p.Y553_E561del(2)|p.Q556_N564>R(2)|p.V555_E562del(2)|p.V555_Q575del(2)|p.W557_D572del(2)|p.W557_N564del(2)|p.V559_E562del(2)|p.K558_N564del(2)|p.W557_I571del(2)|p.K558_Y570>N(2)|p.V559_N566>D(2)|p.Q556_N564>H(2)|p.P551_V559>I(1)|p.Q556_L576>H(1)|p.K558_V559>TG(1)|p.K558_Q575del(1)|p.V555_Y570del(1)|p.M552_T574>TESA(1)|p.Q556_D572>PS(1)|p.Q556_I563del(1)|p.W557_I563>FP(1)|p.M552_V560del(1)|p.K558_N564>R(1)|p.K558_E561>NP(1)|p.V559_P573>A(1)|p.K550_Y568del(1)|p.K558_D572>N(1)|p.V555_V559>G(1)|p.E554_N564>D(1)|p.V559_L576del(1)|p.P551_E561>Q(1)|p.K558_V559insS(1)|p.E554_E562del(1)|p.K550_V560>L(1)|p.V555_V560>H(1)|p.W557_T575>CP(1)|p.E554_Y570del(1)|p.E554_E561del(1)|p.Q556_N566>SNNLQLY(1)|p.Q556_V559>PF(1)|p.E554_I571del(1)|p.V555_V560>T(1)|p.V555_V560>V(1)|p.W557_E561>PS(1)|p.V559K(1)|p.K558_G565>A(1)|p.Q556_P573del(1)|p.K558_L576>NV(1)|p.Y553_P573del(1)|p.Q556_V560>TTF(1)|p.Q556_V559>HF(1)|p.K558_V560>R(1)|p.W557_I563>T(1)|p.K558_T574>NRS(1)|p.V559_I571del(1)|p.P551_V559del>L(1)|p.E554_D572del(1)|p.Y553_V559del(1)|p.M552_V559>IT(1)|p.V555_G565del(1)|p.P551_V569>L(1)|p.K558_P573del(1)|p.Q556_N564del(1)|p.E554_V560>K(1)|p.E554_V560>D(1)|p.V559_S590del(1)|p.V555_N566>D(1)|p.V559_N564del(1)|p.Q556_V560>HNLQLY(1)|p.W557_V559>I(1)|p.K558_L576del(1)|p.W557_V559>E(1)|p.K558_V559>S(1)|p.K558_V560>M(1)|p.M552_Y570del(1)|p.K558_V559>QP(1)|p.K558_P573>R(1)|p.V555_I563del(1)|p.K558_G565del(1)|p.Q556_V560>F(1)|p.W557_Y570del(1)|p.M552_I563del(1)|p.Q556_E561del(1)|p.V555_N564del(1)|p.Q556_E561>HH(1)|p.Y553_L576>NCLHLYSSQ(1)|p.E554_N564del(1)|p.V559_V569del(1)|p.Y553_V559>E(1)|p.Q556_E561>P(1)		soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CAGTGGAAGGTTGTTGAGGAG	0.388		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				18	45					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55964401	55964401	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:55964401G>A	uc003has.2	-	17	2714	c.2412C>T	c.(2410-2412)ATC>ATT	p.I804I	KDR_uc003hat.1_Silent_p.I804I	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	804	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GATCCATGACGATGGACAAGT	0.483			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			17	33					0	0	1	0	0
CEP135	9662	broad.mit.edu	37	4	56878146	56878146	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:56878146C>T	uc003hbi.2	+	21	3031	c.2797C>T	c.(2797-2799)CAA>TAA	p.Q933*	CEP135_uc003hbj.2_Nonsense_Mutation_p.Q639*	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	933	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					AAAAGAAATTCAAGAGGTAAT	0.289													5	10					0	0	1	0	0
PAICS	10606	broad.mit.edu	37	4	57318118	57318118	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:57318118C>T	uc003hbs.1	+	8	1083	c.852C>T	c.(850-852)ATC>ATT	p.I284I	PAICS_uc011cac.1_Silent_p.I284I|PAICS_uc003hbt.1_Silent_p.I291I|PAICS_uc003hbu.1_Silent_p.I284I|PAICS_uc010ihd.1_Silent_p.I285I	NM_006452	NP_006443	P22234	PUR6_HUMAN	phosphoribosylaminoimidazole carboxylase,	284	AIR carboxylase.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|identical protein binding|phosphoribosylaminoimidazole carboxylase activity|phosphoribosylaminoimidazolesuccinocarboxamide synthase activity				0	Glioma(25;0.08)|all_neural(26;0.101)				L-Aspartic Acid(DB00128)	GTGAAAAAATCAAGAAGGCCT	0.408													4	16					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62363066	62363066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:62363066G>A	uc010ihh.2	+	1	228	c.55G>A	c.(55-57)GCT>ACT	p.A19T	LPHN3_uc003hcq.3_Missense_Mutation_p.A19T|LPHN3_uc010ihg.1_Missense_Mutation_p.G19S	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	19					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						AATAATTCATGGTAAGATTTT	0.378													6	21					0	0	1	0	0
TECRL	253017	broad.mit.edu	37	4	65175598	65175598	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:65175598G>A	uc003hcv.2	-	6	712	c.603C>T	c.(601-603)ACC>ACT	p.T201T	TECRL_uc003hcw.2_Silent_p.T201T	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	201					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						GAACAAATAAGGTTTCCAAAA	0.323													18	53					0	0	1	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68708278	68708278	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:68708278C>T	uc003hdq.2	-	4	380	c.315G>A	c.(313-315)CTG>CTA	p.L105L	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc011caj.1_5'UTR	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	105	SEA.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CCACTCACCTCAGTTTGGCAA	0.328													11	30					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69682277	69682277	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:69682277A>G	uc003hee.2	+	1	565	c.540A>G	c.(538-540)GAA>GAG	p.E180E	UGT2B10_uc011cam.1_Intron	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	180					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ACTCATTTGAAAGGCACAGTG	0.408													25	73					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70359453	70359453	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:70359453G>A	uc003hek.3	-	2	875	c.828C>T	c.(826-828)TTC>TTT	p.F276F	UGT2B4_uc011cap.1_Silent_p.F140F|UGT2B4_uc003hel.3_Silent_p.F276F	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	276					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						GTCCTCCAACGAACTCAACAT	0.413													46	95					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361377	70361377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:70361377C>T	uc003hek.3	-	1	250	c.203G>A	c.(202-204)AGC>AAC	p.S68N	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.S68N	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	68					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AGTAGATGGGCTGTTGGGATC	0.398													37	56					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71275428	71275428	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:71275428C>A	uc003hfi.2	+	3	557	c.383C>A	c.(382-384)CCT>CAT	p.P128H		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	128	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				CCTCCTATTCCTTTTTTTCTT	0.433													4	111					1	1	1	1	0
ENAM	10117	broad.mit.edu	37	4	71508414	71508414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:71508414C>T	uc011caw.1	+	9	1552	c.1271C>T	c.(1270-1272)CCT>CTT	p.P424L		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	424					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			GGTCCCAAACCTGGCCCTGTT	0.463													28	57					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71510227	71510227	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:71510227C>T	uc011caw.1	+	9	3365	c.3084C>T	c.(3082-3084)TCC>TCT	p.S1028S		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	1028					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			ATGAAGGCTCCAATCCAGAAG	0.428													26	49					0	0	1	0	0
GC	2638	broad.mit.edu	37	4	72622450	72622450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:72622450C>T	uc003hge.2	-	8	1166	c.1013G>A	c.(1012-1014)GGA>GAA	p.G338E	GC_uc003hgd.2_Missense_Mutation_p.G216E|GC_uc010iie.2_Missense_Mutation_p.G338E|GC_uc010iif.2_Missense_Mutation_p.G357E	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	338	Albumin 2.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	TTTGGTGTTTCCTGGATCACA	0.473													5	23					0	0	1	0	0
NPFFR2	10886	broad.mit.edu	37	4	72994359	72994359	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:72994359G>A	uc003hgg.2	+	2	455	c.357G>A	c.(355-357)TGG>TGA	p.W119*	NPFFR2_uc010iig.1_Intron|NPFFR2_uc003hgi.2_Nonsense_Mutation_p.W20*|NPFFR2_uc003hgh.2_Nonsense_Mutation_p.W17*	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	119	Extracellular (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			ATCCCATCTGGAATGTCAATG	0.358													10	20					0	0	1	0	0
NPFFR2	10886	broad.mit.edu	37	4	73003829	73003829	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:73003829T>A	uc003hgg.2	+	3	805	c.707T>A	c.(706-708)TTT>TAT	p.F236Y	NPFFR2_uc010iig.1_Missense_Mutation_p.F18Y|NPFFR2_uc003hgi.2_Missense_Mutation_p.F137Y|NPFFR2_uc003hgh.2_Missense_Mutation_p.F134Y	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	236	Helical; Name=3; (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			GCTTCAGTCTTTACGTTAGTT	0.398													13	31					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74275124	74275124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:74275124C>T	uc003hgs.3	+	5	608	c.535C>T	c.(535-537)CTT>TTT	p.L179F	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Missense_Mutation_p.L179F|ALB_uc010iii.2_Missense_Mutation_p.L64F|ALB_uc003hgu.3_Missense_Mutation_p.L29F|ALB_uc003hgv.3_5'UTR|ALB_uc011cbf.1_Missense_Mutation_p.L69F|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'UTR	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	179	Albumin 1.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	CCCGGAACTCCTTTTCTTTGC	0.353													18	64					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74283322	74283322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:74283322G>A	uc003hgs.3	+	11	1437	c.1364G>A	c.(1363-1365)GGA>GAA	p.G455E	ALB_uc003hgw.3_Missense_Mutation_p.G263E|ALB_uc011cbe.1_Missense_Mutation_p.G134E|ALB_uc003hgt.3_Missense_Mutation_p.G455E|ALB_uc010iii.2_Missense_Mutation_p.G340E|ALB_uc003hgu.3_Missense_Mutation_p.G305E|ALB_uc003hgv.3_Missense_Mutation_p.G134E|ALB_uc011cbf.1_Missense_Mutation_p.G345E|ALB_uc010iij.2_Intron|ALB_uc003hgx.3_Missense_Mutation_p.G134E	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	455	Albumin 3.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	AGAAACCTAGGAAAAGTGGGC	0.353													18	46					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74352808	74352808	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:74352808C>T	uc003hhb.2	+	5	638	c.607C>T	c.(607-609)CAA>TAA	p.Q203*		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	203	Albumin 1.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CAACTGCCTTCAAACAAGGGT	0.413													9	25					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74354356	74354356	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:74354356G>A	uc003hhb.2	+	7	754	c.723G>A	c.(721-723)GCG>GCA	p.A241A		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	241	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GATATATTGCGATACTCAGTC	0.338													17	49					0	0	1	0	0
PARM1	25849	broad.mit.edu	37	4	75938248	75938248	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:75938248A>T	uc003hih.1	+	2	897	c.657A>T	c.(655-657)AAA>AAT	p.K219N		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	219	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						CCCAGGAGAAAACACCCCCAA	0.552													19	55					0	0	1	0	0
CNOT6L	246175	broad.mit.edu	37	4	78697486	78697486	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:78697486G>A	uc011ccd.1	-	2	197	c.66C>T	c.(64-66)ATC>ATT	p.I22I	CNOT6L_uc003hks.2_Silent_p.I22I|CNOT6L_uc011cce.1_Silent_p.I22I	NM_144571	NP_653172	Q96LI5	CNO6L_HUMAN	CCR4-NOT transcription complex, subunit 6-like	22					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	exonuclease activity|protein binding			large_intestine(1)	1						CTGCTGACATGATGGTATAAA	0.368													25	59					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79371446	79371446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:79371446C>T	uc003hlb.2	+	45	6856	c.6416C>T	c.(6415-6417)TCT>TTT	p.S2139F		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2138	CSPG 9.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GAGCAAATTTCTATTAAAGGC	0.502													27	61					0	0	1	0	0
FGF5	2250	broad.mit.edu	37	4	81207613	81207613	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:81207613C>T	uc003hmd.2	+	3	831	c.594C>T	c.(592-594)GCC>GCT	p.A198A	FGF5_uc003hme.2_3'UTR	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	198					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						GAGGAAAAGCCAAACGAGGGT	0.458													23	70					0	0	1	0	0
ADH4	127	broad.mit.edu	37	4	100057638	100057638	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:100057638C>T	uc003hun.2	-	5	637	c.561G>A	c.(559-561)GGG>GGA	p.G187G	uc003hum.1_Intron|ADH4_uc011ced.1_Silent_p.G206G	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	187					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	TGATTGCAGCCCCATAGCCAG	0.323													15	53					0	0	1	0	0
ADH6	130	broad.mit.edu	37	4	100134872	100134872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:100134872C>T	uc003hup.3	-	3	247	c.153G>A	c.(151-153)ATG>ATA	p.M51I	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.M51I|ADH6_uc011cef.1_Intron|ADH6_uc010ile.2_Missense_Mutation_p.M51I	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	51					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	CCAACACTTTCATCTCTGTAC	0.488													22	40					0	0	1	0	0
ADH6	130	broad.mit.edu	37	4	100137326	100137326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:100137326G>A	uc003hup.3	-	2	206	c.112C>T	c.(112-114)CGC>TGC	p.R38C	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.R38C|ADH6_uc011cef.1_5'UTR|ADH6_uc010ile.2_Missense_Mutation_p.R38C	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	38					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	ACCTTTATGCGAACTTCCTTT	0.393													16	28					0	0	1	0	0
ADH1B	125	broad.mit.edu	37	4	100232727	100232727	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:100232727G>A	uc003hus.3	-	7	999	c.915C>T	c.(913-915)AAC>AAT	p.N305N	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Silent_p.N265N|ADH1B_uc011ceh.1_Silent_p.N150N|ADH1B_uc011cei.1_Silent_p.N265N	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	305					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GCAGCATAGGGTTTATTGAGA	0.443													46	103					0	0	1	0	0
ADH1C	126	broad.mit.edu	37	4	100261800	100261800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:100261800G>A	uc003huu.2	-	9	981	c.896C>T	c.(895-897)TCC>TTC	p.S299F		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	299					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	GAGGTTCTGGGAATCAGGAGG	0.448									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				68	139					0	0	1	0	0
UBE2D3	7323	broad.mit.edu	37	4	103723739	103723739	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:103723739G>A	uc003hwk.2	-	5	638	c.177C>T	c.(175-177)GAC>GAT	p.D59D	UBE2D3_uc003hwi.2_Silent_p.D59D|UBE2D3_uc003hwj.2_RNA|UBE2D3_uc003hwl.2_Silent_p.D59D|UBE2D3_uc011cet.1_Silent_p.D59D|UBE2D3_uc011ceu.1_Silent_p.D59D|UBE2D3_uc003hwo.2_Silent_p.D59D|UBE2D3_uc003hwp.2_Silent_p.D59D|UBE2D3_uc003hwq.2_Silent_p.D61D|UBE2D3_uc003hwr.2_Silent_p.D59D	NM_181887	NP_871616	P61077	UB2D3_HUMAN	ubiquitin-conjugating enzyme E2D 3 isoform 1	59					apoptosis|BMP signaling pathway|DNA repair|negative regulation of type I interferon production|proteasomal ubiquitin-dependent protein catabolic process|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein monoubiquitination|transforming growth factor beta receptor signaling pathway	endosome membrane|plasma membrane	ATP binding|protein binding|ubiquitin-protein ligase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.13e-08)		TGAAGGGGTAGTCTGTAGGAA	0.328													38	62					0	0	1	0	0
NPNT	255743	broad.mit.edu	37	4	106848586	106848586	+	Splice_Site	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:106848586G>A	uc003hya.2	+	3	470	c.265_splice	c.e3+1	p.D89_splice	NPNT_uc011cfc.1_Splice_Site_p.D106_splice|NPNT_uc011cfd.1_Splice_Site_p.D89_splice|NPNT_uc011cfe.1_Splice_Site_p.D89_splice|NPNT_uc010ilt.1_Splice_Site_p.D89_splice|NPNT_uc011cff.1_Splice_Site_p.D89_splice|NPNT_uc010ilu.1_Splice_Site	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor						cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		TGTAATCAAGGTAGGAAAACA	0.398													5	24					0	0	1	0	0
NPNT	255743	broad.mit.edu	37	4	106861357	106861357	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:106861357C>T	uc003hya.2	+	6	836	c.631C>T	c.(631-633)CAA>TAA	p.Q211*	NPNT_uc011cfc.1_Nonsense_Mutation_p.Q228*|NPNT_uc011cfd.1_Nonsense_Mutation_p.Q241*|NPNT_uc011cfe.1_Nonsense_Mutation_p.Q241*|NPNT_uc010ilt.1_Nonsense_Mutation_p.Q211*|NPNT_uc011cff.1_Nonsense_Mutation_p.Q211*|NPNT_uc010ilu.1_Nonsense_Mutation_p.Q107*	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor	211	EGF-like 4; calcium-binding (Potential).				cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		AGGCAAATATCAATGTCATGG	0.443													19	57					0	0	1	0	0
SEC24D	9871	broad.mit.edu	37	4	119736660	119736660	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:119736660G>A	uc003ici.3	-	5	891	c.619C>T	c.(619-621)CAG>TAG	p.Q207*	SEC24D_uc003icj.3_Nonsense_Mutation_p.Q207*|SEC24D_uc003icl.2_RNA|SEC24D_uc010imz.1_RNA|SEC24D_uc011cgg.1_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	207	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						GGTGGGGGCTGGTACTGGGCA	0.602													20	38					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123192757	123192757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:123192757C>T	uc003ieh.2	+	45	8123	c.8078C>T	c.(8077-8079)TCA>TTA	p.S2693L	KIAA1109_uc003iel.1_Missense_Mutation_p.S628L|KIAA1109_uc003iek.2_Missense_Mutation_p.S1312L	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2693					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						ATTACAGTGTCAGAACAAAGT	0.373													11	21					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126373565	126373565	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:126373565G>A	uc003ifj.3	+	9	11394	c.11394G>A	c.(11392-11394)GTG>GTA	p.V3798V	FAT4_uc011cgp.1_Silent_p.V2096V|FAT4_uc003ifi.1_Silent_p.V1276V	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3798	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAGTAAAGGTGGAATCTGTGG	0.483													13	31					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126411760	126411760	+	Missense_Mutation	SNP	G	A	A	rs148534921		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:126411760G>A	uc003ifj.3	+	17	13783	c.13783G>A	c.(13783-13785)GAA>AAA	p.E4595K	FAT4_uc011cgp.1_Missense_Mutation_p.E2836K|FAT4_uc003ifi.1_Missense_Mutation_p.E2072K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4595	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TATCTATGATGAAACTGATAT	0.483													23	48					0	0	1	0	0
SLC25A31	83447	broad.mit.edu	37	4	128651756	128651756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:128651756C>T	uc003ifl.2	+	1	202	c.56C>T	c.(55-57)TCC>TTC	p.S19F		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	19	Solcar 1.				transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						GACGCCTCATCCTTCGGGAAG	0.582													21	59					0	0	1	0	0
MFSD8	256471	broad.mit.edu	37	4	128864936	128864936	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:128864936A>G	uc003ifp.2	-	5	573	c.410T>C	c.(409-411)GTT>GCT	p.V137A	MFSD8_uc011cgu.1_Missense_Mutation_p.V92A|MFSD8_uc011cgv.1_Missense_Mutation_p.V137A|MFSD8_uc011cgw.1_RNA|MFSD8_uc011cgx.1_Missense_Mutation_p.V92A	NM_152778	NP_689991	Q8NHS3	MFSD8_HUMAN	major facilitator superfamily domain containing	137	Helical; (Potential).				cell death|transmembrane transport	integral to membrane|lysosomal membrane				ovary(1)|liver(1)	2						TCCACGAGCAACCAGCATGTA	0.408													8	25					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138450971	138450971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:138450971C>T	uc003ihe.3	-	1	2659	c.2272G>A	c.(2272-2274)GAC>AAC	p.D758N	PCDH18_uc003ihf.3_Missense_Mutation_p.D751N|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.D538N|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	758	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					AATGTGATGTCCCCTTTGTGA	0.498													21	50					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452127	138452127	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:138452127C>T	uc003ihe.3	-	1	1503	c.1116G>A	c.(1114-1116)GGG>GGA	p.G372G	PCDH18_uc003ihf.3_Silent_p.G365G|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.G152G|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	372	Cadherin 4.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CAATAGGATCCCCTTCAAAAA	0.348													17	32					0	0	1	0	0
CLGN	1047	broad.mit.edu	37	4	141313412	141313412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:141313412C>T	uc011chi.1	-	14	1830	c.1612G>A	c.(1612-1614)GAG>AAG	p.E538K	CLGN_uc003iii.2_Missense_Mutation_p.E538K	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	538	Cytoplasmic (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					TTTTTTTCCTCTTCCAGGTCC	0.363													50	143					0	0	1	0	0
GYPA	2993	broad.mit.edu	37	4	145039905	145039905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:145039905C>T	uc003ijo.3	-	4	349	c.233G>A	c.(232-234)GGA>GAA	p.G78E	GYPA_uc003ijn.2_Missense_Mutation_p.G78E|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Missense_Mutation_p.G45E|GYPA_uc003ijp.3_Missense_Mutation_p.G46E|GYPA_uc010ioq.2_Intron|GYPA_uc010ior.2_Missense_Mutation_p.G13E|GYPA_uc010ios.1_Intron	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	78	Extracellular.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					TACCCTTTCTCCTATAAAGCA	0.318													18	47					0	0	1	0	0
HHIP	64399	broad.mit.edu	37	4	145567906	145567906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:145567906G>A	uc003ijs.1	+	1	734	c.79G>A	c.(79-81)GAA>AAA	p.E27K	uc003ijq.1_5'Flank|HHIP_uc003ijr.1_Missense_Mutation_p.E27K	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	27						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		TAAGTTTGGGGAAAGAAACGA	0.572													24	73					0	0	1	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148887936	148887936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:148887936G>A	uc003ilf.2	+	18	1662	c.1662G>A	c.(1660-1662)ATG>ATA	p.M554I	ARHGAP10_uc003ilg.2_Missense_Mutation_p.M203I|ARHGAP10_uc003ilh.2_Missense_Mutation_p.M135I	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	554	Rho-GAP.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		CTGCCCTCATGGACTTGAAGT	0.403													18	47					0	0	1	0	0
LRBA	987	broad.mit.edu	37	4	151604791	151604791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:151604791G>A	uc010ipj.2	-	37	6307	c.5833C>T	c.(5833-5835)CGT>TGT	p.R1945C	LRBA_uc003ilt.3_Missense_Mutation_p.R604C|LRBA_uc003ilu.3_Missense_Mutation_p.R1945C	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1945						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					ACGTGGTCACGATATTTTGCT	0.408													12	48					0	0	1	0	0
SH3D19	152503	broad.mit.edu	37	4	152069133	152069133	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:152069133G>A	uc010ipl.1	-	11	2273	c.1183C>T	c.(1183-1185)CAA>TAA	p.Q395*	SH3D19_uc003imb.2_Nonsense_Mutation_p.Q173*|SH3D19_uc003imc.2_Nonsense_Mutation_p.Q359*|SH3D19_uc003ime.2_Nonsense_Mutation_p.Q395*|SH3D19_uc010ipm.2_Nonsense_Mutation_p.Q395*	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	395					cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				ACCGGATCTTGATTTTTAAAA	0.403													14	50					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155157007	155157007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:155157007C>T	uc003inw.2	-	25	7432	c.7432G>A	c.(7432-7434)GGA>AGA	p.G2478R		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2478	Cadherin 22.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TAAATATTTCCATTGGTTTTA	0.383													15	46					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155157406	155157406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:155157406G>A	uc003inw.2	-	25	7033	c.7033C>T	c.(7033-7035)CCG>TCG	p.P2345S		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2345	Cadherin 21.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TCTCCATACGGACCAGCATCA	0.403													20	52					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155507595	155507595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:155507595C>T	uc003iod.1	-	5	1044	c.986G>A	c.(985-987)GGA>GAA	p.G329E	FGA_uc003ioe.1_Missense_Mutation_p.G329E|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	329	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	TCCAGTACTTCCAGGTCCAGA	0.562													61	95					0	0	1	0	0
GUCY1B3	2983	broad.mit.edu	37	4	156716567	156716567	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:156716567G>A	uc003ipc.2	+	7	968	c.801G>A	c.(799-801)GGG>GGA	p.G267G	GUCY1B3_uc011cio.1_Silent_p.G289G|GUCY1B3_uc011cip.1_Silent_p.G247G|GUCY1B3_uc003ipd.2_Silent_p.G195G|GUCY1B3_uc010iqf.2_Silent_p.G267G|GUCY1B3_uc010iqg.2_Silent_p.G195G|GUCY1B3_uc011ciq.1_Silent_p.G195G	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	267					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		GTTTCCATGGGATCCTTTCTC	0.363													20	43					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158057699	158057699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:158057699G>A	uc003ipj.2	+	5	578	c.376G>A	c.(376-378)GAT>AAT	p.D126N		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	126	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	TAGGGGTTCAGATGCACTGAC	0.403													22	49					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164393468	164393468	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:164393468G>A	uc003iqp.3	-	1	1580	c.1419C>T	c.(1417-1419)TTC>TTT	p.F473F		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	473						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGGTTCGAATGAAGCACATTC	0.453													37	67					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164393562	164393562	+	Missense_Mutation	SNP	C	T	T	rs3811750	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:164393562C>T	uc003iqp.3	-	1	1486	c.1325G>A	c.(1324-1326)CGA>CAA	p.R442Q		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	442						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GGGAATGCTTCGGAACATGGC	0.468													25	47					0	0	1	0	0
GK3P	2713	broad.mit.edu	37	4	166200720	166200720	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:166200720C>T	uc003ird.3	-	1	456	c.78G>A	c.(76-78)TTG>TTA	p.L26L	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						AATTGAAAACCAAAAAGCGCG	0.498													15	31					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169292858	169292858	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:169292858C>T	uc003irq.3	-	36	5054	c.4833G>A	c.(4831-4833)TGG>TGA	p.W1611*		NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1611							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TATCTAATTTCCATGGCCACA	0.408													11	15					0	0	1	0	0
AADAT	51166	broad.mit.edu	37	4	171010790	171010790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:171010790G>A	uc003isr.2	-	1	394	c.52C>T	c.(52-54)CCC>TCC	p.P18S	AADAT_uc003iss.2_Missense_Mutation_p.P18S|AADAT_uc003ist.2_Missense_Mutation_p.P18S	NM_016228	NP_057312	Q8N5Z0	AADAT_HUMAN	kynurenine aminotransferase II	18					2-oxoglutarate metabolic process|biosynthetic process|glutamate metabolic process|lysine catabolic process	mitochondrial matrix	2-aminoadipate transaminase activity|kynurenine-oxoglutarate transaminase activity|protein homodimerization activity				0		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0355)|LUSC - Lung squamous cell carcinoma(193;0.118)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GTCCGGATGGGAGAAGGGTTT	0.557											OREG0016403	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	130					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175898067	175898067	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:175898067T>C	uc003iuc.2	+	5	2061	c.1391T>C	c.(1390-1392)CTT>CCT	p.L464P	ADAM29_uc003iud.2_Missense_Mutation_p.L464P|ADAM29_uc010irr.2_Missense_Mutation_p.L464P|ADAM29_uc011cki.1_Missense_Mutation_p.L464P	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	464	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GAATGTGATCTTCCAGAGTGG	0.453													30	66					0	0	1	0	0
ASB5	140458	broad.mit.edu	37	4	177142701	177142701	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:177142701G>A	uc003iuq.1	-	4	451	c.435C>T	c.(433-435)TCC>TCT	p.S145S	ASB5_uc003iup.1_Silent_p.S92S	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	145	ANK 3.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		GACTGCCTTGGGAGCATGCGT	0.478													16	43					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183674626	183674626	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:183674626T>A	uc003ivd.1	+	20	3923	c.3886T>A	c.(3886-3888)TTA>ATA	p.L1296I	ODZ3_uc003ive.1_Missense_Mutation_p.L709I	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1296	NHL 2.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TAAGAATGGATTAATCTACTT	0.333													21	47					0	0	1	0	0
KLKB1	3818	broad.mit.edu	37	4	187173248	187173248	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:187173248C>T	uc003iyy.2	+	11	1293	c.1222C>T	c.(1222-1224)CTG>TTG	p.L408L	KLKB1_uc011clc.1_Silent_p.L206L|KLKB1_uc011cld.1_Silent_p.L370L	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	408	Peptidase S1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		GCAGGTGAGCCTGCAGGTGAA	0.537													26	54					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189013014	189013014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr4:189013014C>T	uc003izl.2	-	7	713	c.677G>A	c.(676-678)GGG>GAG	p.G226E	TRIML2_uc003izj.1_Missense_Mutation_p.G54E|TRIML2_uc003izk.1_Missense_Mutation_p.G34E|TRIML2_uc011cle.1_Missense_Mutation_p.G301E	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	226	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		ATCCTGCTGCCCATGTCTCAA	0.532													34	67					0	0	1	0	0
CLPTM1L	81037	broad.mit.edu	37	5	1339087	1339087	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:1339087G>A	uc003jch.2	-	4	533	c.487C>T	c.(487-489)CTG>TTG	p.L163L	CLPTM1L_uc003jcg.2_Silent_p.L30L	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	163	Extracellular (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		GGCTCATCCAGGGCACTCGTC	0.602													13	31					0	0	1	0	0
LPCAT1	79888	broad.mit.edu	37	5	1494882	1494882	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:1494882G>A	uc003jcm.2	-	3	543	c.426C>T	c.(424-426)ATC>ATT	p.I142I		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	142	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		TGGTCACAGGGATGGCGTCGA	0.657													20	48					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9063110	9063110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:9063110C>T	uc003jek.2	-	18	3119	c.2407G>A	c.(2407-2409)GGC>AGC	p.G803S		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	803	TSP type-1 5.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						TTCCGAATGCCCCTGCTGCAG	0.577													19	43					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13862836	13862836	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:13862836C>T	uc003jfd.2	-	29	4659	c.4617G>A	c.(4615-4617)GTG>GTA	p.V1539V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1539	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCTCTCTTTCACCGCACTGA	0.428									Kartagener_syndrome				28	34					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23522948	23522948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:23522948G>A	uc003jgo.2	+	8	1018	c.836G>A	c.(835-837)CGA>CAA	p.R279Q		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	279	SET.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TATGAGGGCCGAATTACAGAA	0.547										HNSCC(3;0.000094)			14	55					0	0	1	0	0
RNASEN	29102	broad.mit.edu	37	5	31472318	31472318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:31472318G>A	uc003jhg.2	-	16	2452	c.2093C>T	c.(2092-2094)TCC>TTC	p.S698F	RNASEN_uc003jhh.2_Missense_Mutation_p.S661F|RNASEN_uc003jhi.2_Missense_Mutation_p.S661F	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	698	Necessary for interaction with DGCR8 and pri-miRNA processing activity.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						CTGGTGCATGGACAGCACTTC	0.493													19	50					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32010572	32010572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:32010572C>T	uc003jhl.2	+	6	1779	c.1391C>T	c.(1390-1392)TCT>TTT	p.S464F	PDZD2_uc003jhm.2_Missense_Mutation_p.S464F|PDZD2_uc011cnx.1_Missense_Mutation_p.S290F	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	464					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GGAACCAGCTCTTCTGTCCAG	0.517													19	40					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33751564	33751564	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:33751564G>C	uc003jia.1	-	3	742	c.579C>G	c.(577-579)ATC>ATG	p.I193M	ADAMTS12_uc010iuq.1_Missense_Mutation_p.I193M|ADAMTS12_uc003jib.1_Missense_Mutation_p.I193M	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	193					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TCCTGTAAACGATGTGCGGGT	0.458										HNSCC(64;0.19)			24	85					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35763670	35763670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:35763670C>T	uc003jjo.2	+	26	3778	c.3667C>T	c.(3667-3669)CCC>TCC	p.P1223S	SPEF2_uc003jjp.1_Missense_Mutation_p.P709S	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1223					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AACAGTTACACCCAAACCAAA	0.373													22	41					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35873737	35873737	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:35873737C>T	uc003jjs.2	+	5	782	c.693C>T	c.(691-693)ATC>ATT	p.I231I	IL7R_uc011coo.1_Silent_p.I231I|IL7R_uc011cop.1_Intron	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	231	Extracellular (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			CTCCAGAGATCAATAATAGCT	0.408													7	33					0	0	1	0	0
C5orf33	133686	broad.mit.edu	37	5	36241660	36241660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:36241660C>T	uc003jkf.3	-	1	241	c.241G>A	c.(241-243)GAG>AAG	p.E81K	C5orf33_uc003jkg.3_Intron|C5orf33_uc011cov.1_Intron	NM_001085411	NP_001078880	Q4G0N4	NAKD1_HUMAN	hypothetical protein LOC133686 isoform 1	81							NAD+ kinase activity				0	all_lung(31;5.63e-05)		Epithelial(62;0.0254)|all cancers(62;0.0805)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGCTCGAACTCGTACCGGGTG	0.507													3	9					0	0	1	0	0
C5orf42	65250	broad.mit.edu	37	5	37183116	37183116	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:37183116G>A	uc011cpa.1	-	26	5398	c.5167C>T	c.(5167-5169)CAG>TAG	p.Q1723*	C5orf42_uc011coy.1_Nonsense_Mutation_p.Q224*|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Nonsense_Mutation_p.Q798*|C5orf42_uc011cpb.1_Nonsense_Mutation_p.Q604*	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1723										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			TCATTGCACTGAATAGCTTTG	0.368													11	53					0	0	1	0	0
C5orf42	65250	broad.mit.edu	37	5	37201714	37201714	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:37201714G>A	uc011cpa.1	-	19	3717	c.3486C>T	c.(3484-3486)CCC>CCT	p.P1162P	C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Silent_p.P237P|C5orf42_uc011cpb.1_Silent_p.P43P	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1162										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			TAGCTGGCTGGGGACAGTACA	0.348													20	56					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38431358	38431358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:38431358G>A	uc003jlc.1	+	15	2458	c.2134G>A	c.(2134-2136)GAT>AAT	p.D712N	EGFLAM_uc003jlb.1_Missense_Mutation_p.D712N|EGFLAM_uc003jle.1_Missense_Mutation_p.D478N|EGFLAM_uc003jlf.1_Missense_Mutation_p.D78N	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	712	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CTTACAGGTGGATAAGCAGAA	0.468													10	36					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38881786	38881786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:38881786G>A	uc003jln.1	+	4	705	c.338G>A	c.(337-339)AGA>AAA	p.R113K	OSMR_uc003jlm.1_Missense_Mutation_p.R113K	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	113	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CACTTTGTAAGAATAAAGAGT	0.483													27	56					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40972624	40972624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:40972624C>T	uc003jmh.2	+	15	2116	c.2002C>T	c.(2002-2004)CCT>TCT	p.P668S	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	668	Sushi 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CTTAGAAGGTCCTTCAGCATT	0.483													35	98					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41061770	41061770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:41061770G>A	uc003jmj.3	-	6	1007	c.517C>T	c.(517-519)CCC>TCC	p.P173S		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	173							binding			ovary(6)|central_nervous_system(2)	8						CTGGGGTAGGGAAAATCTCTC	0.448													26	85					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41176678	41176678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:41176678C>T	uc003jmk.2	-	8	1277	c.1067G>A	c.(1066-1068)CGA>CAA	p.R356Q	C6_uc003jml.1_Missense_Mutation_p.R356Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	356	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATCGAATATTCGGCTGTACAA	0.423													24	21					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42718672	42718672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:42718672G>A	uc003jmt.2	+	10	1106	c.1063G>A	c.(1063-1065)GAA>AAA	p.E355K	GHR_uc011cpq.1_Missense_Mutation_p.E168K	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	355	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TGAGCCAGATGAAAAGACTGA	0.433													34	67					0	0	1	0	0
GHR	2690	broad.mit.edu	37	5	42718806	42718806	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:42718806C>T	uc003jmt.2	+	10	1240	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	GHR_uc011cpq.1_Silent_p.F212F	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	399	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AGACTGATTTCAATGCCAATG	0.458													28	51					0	0	1	0	0
C5orf39	389289	broad.mit.edu	37	5	43040011	43040011	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:43040011C>T	uc003jnf.2	-	1	437	c.138G>A	c.(136-138)GAG>GAA	p.E46E	C5orf39_uc010ivj.1_RNA|LOC153684_uc003jng.2_5'Flank|LOC153684_uc003jni.2_5'Flank	NM_001014279	NP_001014301	Q3ZCQ2	AX2R_HUMAN	annexin II receptor	46							receptor activity				0						CCAGTGAGTACTCTCCTAGTA	0.582											OREG0016598	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	51					0	0	1	0	0
SNX18	112574	broad.mit.edu	37	5	53839021	53839021	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:53839021A>G	uc003jpi.3	+	2	1824	c.1634A>G	c.(1633-1635)AAA>AGA	p.K545R	SNX18_uc011cqg.1_3'UTR	NM_001102575	NP_001096045	Q96RF0	SNX18_HUMAN	sorting nexin 18 isoform a	Error:Variant_position_missing_in_Q96RF0_after_alignment					cell communication|endocytosis|positive regulation of GTPase activity|protein transport	endomembrane system|endosome membrane|extrinsic to internal side of plasma membrane	phosphatidylinositol binding|protein binding				0		Lung NSC(810;3.46e-05)|Breast(144;0.102)				GCTCTTACCAAAGTCAAGGAG	0.398													11	22					0	0	1	0	0
ESM1	11082	broad.mit.edu	37	5	54281315	54281315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:54281315G>A	uc003jpk.2	-	1	100	c.31C>T	c.(31-33)CTC>TTC	p.L11F	ESM1_uc010ivt.2_Missense_Mutation_p.L11F	NM_007036	NP_008967	Q9NQ30	ESM1_HUMAN	endothelial cell-specific molecule 1 isoform a	11					angiogenesis|regulation of cell growth	extracellular region	growth factor activity|insulin-like growth factor binding				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.116)	Lung(15;0.23)			GCAGGCACGAGGAGCGTGGTC	0.602													11	29					0	0	1	0	0
GZMK	3003	broad.mit.edu	37	5	54327348	54327348	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:54327348A>C	uc003jpl.1	+	4	564	c.520A>C	c.(520-522)ACT>CCT	p.T174P		NM_002104	NP_002095	P49863	GRAK_HUMAN	granzyme K precursor	174	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				AGTCACTGTTACTGTCCTAAG	0.478													27	59					0	0	1	0	0
CDC20B	166979	broad.mit.edu	37	5	54423134	54423134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:54423134G>A	uc003jpo.1	-	8	1115	c.940C>T	c.(940-942)CAT>TAT	p.H314Y	CDC20B_uc003jpn.1_Missense_Mutation_p.H314Y|CDC20B_uc010ivu.1_Missense_Mutation_p.H314Y|CDC20B_uc010ivv.1_Missense_Mutation_p.H314Y	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	314	WD 3.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			ACTGACAAATGACCAAGCATA	0.398													35	70					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64558668	64558668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:64558668G>A	uc003jtp.2	-	13	2556	c.1742C>T	c.(1741-1743)TCC>TTC	p.S581F	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.S202F	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	581	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GTGTCTTAGGGATGAGGAGAC	0.532													5	8					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64766845	64766845	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:64766845G>A	uc003jtp.2	-	3	1036	c.222C>T	c.(220-222)GAC>GAT	p.D74D	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	74					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GATCAATAGGGTCCATACTCC	0.378													17	37					0	0	1	0	0
PDE8B	8622	broad.mit.edu	37	5	76708041	76708041	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:76708041G>A	uc003kfa.2	+	16	1738	c.1693G>A	c.(1693-1695)GAA>AAA	p.E565K	PDE8B_uc003kfb.2_Missense_Mutation_p.E545K|PDE8B_uc003kfc.2_Missense_Mutation_p.E510K|PDE8B_uc003kfd.2_Missense_Mutation_p.E518K|PDE8B_uc003kfe.2_Missense_Mutation_p.E468K	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	565					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		CTTTGAATTGGAAGCCATTAC	0.433													125	239					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79034731	79034731	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:79034731G>A	uc003kgc.2	+	2	10215	c.10143G>A	c.(10141-10143)GAG>GAA	p.E3381E		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3381						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CCTTCCCGGAGGAAGAATTTG	0.478													30	65					0	0	1	0	0
THBS4	7060	broad.mit.edu	37	5	79374926	79374926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:79374926C>T	uc003kgh.2	+	20	2679	c.2356C>T	c.(2356-2358)CAT>TAT	p.H786Y	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	786	TSP C-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		AGGGACCTTCCATGTGAATAC	0.453													25	64					0	0	1	0	0
SPZ1	84654	broad.mit.edu	37	5	79616892	79616892	+	Silent	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:79616892A>T	uc003kgn.2	+	1	1103	c.858A>T	c.(856-858)GGA>GGT	p.G286G	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	286					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		GAAATAATGGAGTCGGTTTCC	0.408													21	56					0	0	1	0	0
SSBP2	23635	broad.mit.edu	37	5	80785071	80785071	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:80785071G>A	uc003kho.2	-	6	641	c.430C>T	c.(430-432)CAG>TAG	p.Q144*	SSBP2_uc010jar.2_Nonsense_Mutation_p.Q32*|SSBP2_uc003khn.2_Nonsense_Mutation_p.Q18*|SSBP2_uc003khp.2_Nonsense_Mutation_p.Q144*|SSBP2_uc011ctp.1_Intron|SSBP2_uc011ctq.1_Nonsense_Mutation_p.Q114*|SSBP2_uc011ctr.1_Nonsense_Mutation_p.Q114*	NM_012446	NP_036578	P81877	SSBP2_HUMAN	single-stranded DNA binding protein 2	144	Pro-rich.				regulation of transcription, DNA-dependent	cytoplasm|nucleus	single-stranded DNA binding		SSBP2/JAK2(4)	haematopoietic_and_lymphoid_tissue(4)|skin(1)	5		Lung NSC(167;0.00154)|all_lung(232;0.00179)|Ovarian(174;0.0338)		OV - Ovarian serous cystadenocarcinoma(54;1.07e-41)|Epithelial(54;2.79e-35)|all cancers(79;1.18e-29)		AATCTTACCTGATTAGGTATC	0.323													6	22					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82868369	82868369	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:82868369G>A	uc003kii.3	+	13	10226	c.9870G>A	c.(9868-9870)AAG>AAA	p.K3290K	VCAN_uc003kij.3_Silent_p.K2303K|VCAN_uc010jau.2_Silent_p.K1536K|VCAN_uc003kik.3_Silent_p.K549K|VCAN_uc003kil.3_Silent_p.K1954K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3290	C-type lectin.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		ATACGTGCAAGAAAGGAACAG	0.363													16	38					0	0	1	0	0
POU5F2	134187	broad.mit.edu	37	5	93076823	93076823	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:93076823G>A	uc003kkl.1	-	1	487	c.447C>T	c.(445-447)ATC>ATT	p.I149I	FAM172A_uc010jbd.2_Intron|FAM172A_uc011cuf.1_Intron|FAM172A_uc011cug.1_Intron|FAM172A_uc011cuh.1_Intron|FAM172A_uc011cui.1_Intron|FAM172A_uc011cuj.1_Intron	NM_153216	NP_694948	Q8N7G0	PO5F2_HUMAN	POU domain class 5, transcription factor 2	149	POU-specific.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(142;3.87e-05)|all_epithelial(76;4.59e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0415)|all cancers(79;2.03e-19)		CTCCCACAGCGATCCCCACAT	0.582													7	32					0	0	1	0	0
FAM172A	83989	broad.mit.edu	37	5	93294641	93294641	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:93294641A>G	uc010jbd.2	-	6	615	c.408T>C	c.(406-408)TTT>TTC	p.F136F	FAM172A_uc011cuf.1_Silent_p.F90F|FAM172A_uc011cug.1_Intron|FAM172A_uc011cuh.1_Intron|FAM172A_uc011cui.1_RNA|FAM172A_uc011cuj.1_Intron|FAM172A_uc003kkm.3_Silent_p.F136F	NM_032042	NP_114431	Q8WUF8	F172A_HUMAN	hypothetical protein LOC83989 isoform 1	136						endoplasmic reticulum|extracellular region					0						TCATAAAGATAAAACTCTTTG	0.353													13	26					0	0	1	0	0
FAM81B	153643	broad.mit.edu	37	5	94749762	94749762	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:94749762C>T	uc003kla.1	+	4	451	c.405C>T	c.(403-405)ATC>ATT	p.I135I	FAM81B_uc010jbe.1_5'UTR	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	135										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		CCTTCCGCATCAAGGAGGACA	0.522													21	42					0	0	1	0	0
TTC37	9652	broad.mit.edu	37	5	94820441	94820441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:94820441G>A	uc003klb.2	-	38	4310	c.4040C>T	c.(4039-4041)ACT>ATT	p.T1347I		NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	1347	TPR 19.						binding			ovary(3)|pancreas(1)	4						TGTGCAGAGAGTTTCAGCTTC	0.338													8	29					0	0	1	0	0
PCSK1	5122	broad.mit.edu	37	5	95757642	95757642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:95757642C>T	uc003kls.1	-	5	768	c.562G>A	c.(562-564)GAT>AAT	p.D188N		NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	188	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCATTAAAATCATAGCTAGCC	0.328													38	93					0	0	1	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101813514	101813514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:101813514G>A	uc003knn.2	-	3	840	c.668C>T	c.(667-669)TCA>TTA	p.S223L	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Missense_Mutation_p.S223L|SLCO6A1_uc003knq.2_Intron	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	223	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TGATTGGAATGATATACCACT	0.348													26	51					0	0	1	0	0
C5orf13	9315	broad.mit.edu	37	5	111066701	111066701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:111066701C>T	uc003kpl.2	-	3	603	c.124G>A	c.(124-126)GAT>AAT	p.D42N	C5orf13_uc011cvr.1_Missense_Mutation_p.D86N|C5orf13_uc011cvs.1_Missense_Mutation_p.D76N|C5orf13_uc003kpk.2_Intron|C5orf13_uc003kpm.2_Missense_Mutation_p.D42N|C5orf13_uc011cvk.1_Missense_Mutation_p.D42N|C5orf13_uc011cvl.1_Missense_Mutation_p.D42N|C5orf13_uc011cvm.1_Missense_Mutation_p.D42N|C5orf13_uc011cvn.1_Missense_Mutation_p.D42N|C5orf13_uc011cvo.1_Missense_Mutation_p.D42N|C5orf13_uc011cvp.1_Missense_Mutation_p.D42N|C5orf13_uc011cvq.1_Missense_Mutation_p.D42N	NM_001142483	NP_001135955	Q16612	NP311_HUMAN	neuronal protein 3.1 isoform a	42						cytoplasm				skin(1)	1		all_cancers(142;0.00597)|all_epithelial(76;0.000144)|Prostate(80;0.0115)|Colorectal(10;0.0446)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;5.45e-09)|Epithelial(69;2e-08)|all cancers(49;1.9e-06)|COAD - Colon adenocarcinoma(37;0.0514)|Colorectal(14;0.0629)		TTTGTCTCATCGTTCTTCTTG	0.478													21	41					0	0	1	0	0
REEP5	7905	broad.mit.edu	37	5	112222717	112222717	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:112222717T>A	uc003kqe.1	-	4	659	c.515A>T	c.(514-516)AAA>ATA	p.K172I	SRP19_uc011cvu.1_Intron|SRP19_uc011cvv.1_Intron|REEP5_uc011cvw.1_Missense_Mutation_p.K145I|REEP5_uc011cvx.1_RNA|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_RNA	NM_005669	NP_005660	Q00765	REEP5_HUMAN	receptor accessory protein 5	172						integral to membrane	protein binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		Epithelial(69;1.3e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.26e-08)|all cancers(49;3.56e-07)|Colorectal(14;0.00778)|COAD - Colon adenocarcinoma(37;0.013)		CTTACCTTCTTTAGTGATGGC	0.498													28	61					0	0	1	0	0
KCNN2	3781	broad.mit.edu	37	5	113822788	113822788	+	Silent	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:113822788A>T	uc003kqo.2	+	6	1753	c.1296A>T	c.(1294-1296)CTA>CTT	p.L432L	KCNN2_uc003kqp.2_Silent_p.L84L|KCNN2_uc010jcg.2_RNA|uc003kqr.1_Intron	NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	432	Calmodulin-binding (By similarity).					integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		AAACATGGCTAATTTACAAAA	0.328													23	37					0	0	1	0	0
FAM170A	340069	broad.mit.edu	37	5	118969720	118969720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:118969720G>A	uc003ksm.2	+	3	487	c.277G>A	c.(277-279)GGA>AGA	p.G93R	FAM170A_uc003ksl.2_Missense_Mutation_p.G93R|FAM170A_uc003ksn.2_Missense_Mutation_p.G93R|FAM170A_uc003kso.2_Missense_Mutation_p.G46R	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	93						intracellular	zinc ion binding			skin(1)	1						TCAGGAACGAGGAGAGACTCC	0.498													20	53					0	0	1	0	0
FTMT	94033	broad.mit.edu	37	5	121188103	121188103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:121188103G>A	uc003kss.2	+	1	454	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	149	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CAAGAAGCCGGAACAGGACGA	0.597													26	69					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121739548	121739548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:121739548G>A	uc003ksw.1	+	3	324	c.118G>A	c.(118-120)GAA>AAA	p.E40K	SNCAIP_uc011cwl.1_5'UTR|SNCAIP_uc010jct.2_Missense_Mutation_p.E40K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E87K|SNCAIP_uc003ksy.1_Silent_p.T24T|SNCAIP_uc003ksz.1_Silent_p.T24T|SNCAIP_uc010jcu.2_Silent_p.T24T|SNCAIP_uc011cwm.1_Silent_p.T24T|SNCAIP_uc003kta.1_Silent_p.T22T|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Silent_p.T24T|SNCAIP_uc010jcx.1_Missense_Mutation_p.E40K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	40					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TACGCAAAACGAAGACAGATC	0.478													25	61					0	0	1	0	0
MEGF10	84466	broad.mit.edu	37	5	126792946	126792946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:126792946C>T	uc003kuh.3	+	26	3721	c.3359C>T	c.(3358-3360)TCA>TTA	p.S1120L	MEGF10_uc003kui.3_Missense_Mutation_p.S1120L	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	1120	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.|Ser-rich.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CGAGACAGTTCATCCTCCCCT	0.443													27	62					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127645087	127645087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:127645087C>T	uc003kuu.2	-	41	5644	c.5205G>A	c.(5203-5205)ATG>ATA	p.M1735I		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1735					bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AGCTTTTTCTCATGTCTATAT	0.383													11	30					0	0	1	0	0
SLC27A6	28965	broad.mit.edu	37	5	128365365	128365365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:128365365C>T	uc003kuy.2	+	10	2044	c.1648C>T	c.(1648-1650)CCA>TCA	p.P550S	SLC27A6_uc003kuz.2_Missense_Mutation_p.P550S	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	550					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AACATTTCTACCAGCTTATGC	0.313													9	27					0	0	1	0	0
FNIP1	96459	broad.mit.edu	37	5	131006312	131006312	+	Silent	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:131006312G>T	uc003kvs.1	-	15	3094	c.2952C>A	c.(2950-2952)ATC>ATA	p.I984I	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Silent_p.I956I	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	984					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		CACTCACTTCGATTAACTTTG	0.383													27	66					2.24059e-21	2.29199e-21	1	1	0
SEPT8	23176	broad.mit.edu	37	5	132087726	132087726	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:132087726C>T	uc003kxr.2	-	10	1672	c.1434G>A	c.(1432-1434)TGG>TGA	p.W478*	CCNI2_uc003kxq.1_Silent_p.L281L|CCNI2_uc011cxg.1_Silent_p.L297L|CCNI2_uc011cxh.1_Silent_p.L282L	NM_001098811	NP_001092281	Q92599	SEPT8_HUMAN	septin 8 isoform a	478					cell cycle	septin complex	GTP binding|protein binding			ovary(2)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATCCTTCCCTCCACGTCGCAT	0.572													5	15					0	0	1	0	0
GDF9	2661	broad.mit.edu	37	5	132199880	132199880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:132199880G>A	uc003kxz.1	-	1	598	c.346C>T	c.(346-348)CTC>TTC	p.L116F	GDF9_uc011cxj.1_Missense_Mutation_p.L28F|UQCRQ_uc003kya.1_5'Flank	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	116					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGGGTGAAGAGCCGAACAGTG	0.483													25	80					0	0	1	0	0
AFF4	27125	broad.mit.edu	37	5	132267893	132267893	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:132267893T>G	uc003kyd.2	-	4	1348	c.940A>C	c.(940-942)AGC>CGC	p.S314R	AFF4_uc011cxk.1_5'UTR|AFF4_uc003kye.1_Missense_Mutation_p.S314R|AFF4_uc003kyf.3_Missense_Mutation_p.S314R	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	314	Ser-rich.				transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCCACACAGCTCACATCACCA	0.289													6	19					0	0	1	0	0
TGFBI	7045	broad.mit.edu	37	5	135397195	135397195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:135397195G>A	uc003lbf.3	+	15	2074	c.1913G>A	c.(1912-1914)AGA>AAA	p.R638K	TGFBI_uc003lbg.3_Missense_Mutation_p.R371K|TGFBI_uc003lbh.3_Missense_Mutation_p.R464K|TGFBI_uc011cyb.1_Missense_Mutation_p.R464K|TGFBI_uc010jed.2_Intron|TGFBI_uc010jee.2_RNA	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	638					angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCAGCCAACAGACCTCAGGAA	0.493													3	13					0	0	1	0	0
PKD2L2	27039	broad.mit.edu	37	5	137235267	137235267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:137235267G>A	uc003lby.2	+	5	643	c.587G>A	c.(586-588)CGA>CAA	p.R196Q	PKD2L2_uc010jep.1_Missense_Mutation_p.R136Q|PKD2L2_uc003lbw.1_Missense_Mutation_p.R196Q|PKD2L2_uc003lbx.2_Missense_Mutation_p.R196Q|PKD2L2_uc011cyi.1_5'UTR	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	196	Extracellular (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GGTGTTTACCGAAATGGGGGA	0.383													17	43					0	0	1	0	0
PURA	5813	broad.mit.edu	37	5	139494188	139494188	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:139494188G>T	uc003lfa.2	+	1	481	c.422G>T	c.(421-423)CGG>CTG	p.R141L		NM_005859	NP_005850	Q00577	PURA_HUMAN	purine-rich element binding protein A	141					DNA unwinding involved in replication|DNA-dependent DNA replication initiation	DNA replication factor A complex	double-stranded telomeric DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|single-stranded DNA binding|transcription factor binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCCGCGCCGGGCGCTCAAA	0.677													3	15					1	1	1	1	0
PCDHA1	56147	broad.mit.edu	37	5	140166584	140166584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140166584G>A	uc003lhb.2	+	1	709	c.709G>A	c.(709-711)GAT>AAT	p.D237N	PCDHA1_uc003lha.2_Missense_Mutation_p.D237N|PCDHA1_uc003lgz.2_Missense_Mutation_p.D237N	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	237	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGACGTTAATGATAACGCCCC	0.478													29	56					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182681	140182681	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140182681G>A	uc003lhf.2	+	1	1899	c.1899G>A	c.(1897-1899)ACG>ACA	p.T633T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.T633T	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	633	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGATCAGCACGACCCGTGCCC	0.662													24	43					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202883	140202883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140202883C>T	uc003lhl.2	+	1	1523	c.1523C>T	c.(1522-1524)TCG>TTG	p.S508L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.S508L|PCDHA5_uc003lhj.1_Missense_Mutation_p.S508L	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	508	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTTACGTTTCGGTGCACGCG	0.701													27	61					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432487	140432487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140432487G>A	uc003lik.1	+	1	1509	c.1432G>A	c.(1432-1434)GAT>AAT	p.D478N		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	478	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCATGCTGAGGATCTTGATTT	0.393													21	38					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433112	140433112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140433112C>T	uc003lik.1	+	1	2134	c.2057C>T	c.(2056-2058)CCA>CTA	p.P686L		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	686	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGGTAAATCCATCCACTAAA	0.408													33	98					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475757	140475757	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140475757C>T	uc003lil.2	+	1	1521	c.1383C>T	c.(1381-1383)TTC>TTT	p.F461F	PCDHB2_uc003lim.1_Silent_p.F122F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	461	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGTTCGTCCGCGAGA	0.632													32	137					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476750	140476750	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140476750G>A	uc003lil.2	+	1	2514	c.2376G>A	c.(2374-2376)AGG>AGA	p.R792R	PCDHB2_uc003lim.1_Silent_p.R453R	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	792	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCAGTTTCAGGAAGAGCTTTG	0.453													39	69					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480581	140480581	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140480581C>T	uc003lio.2	+	1	348	c.348C>T	c.(346-348)TTC>TTT	p.F116F	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	116	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTTGCAATTCGTTACAAACG	0.418													40	48					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515463	140515463	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140515463G>A	uc003liq.2	+	1	664	c.447G>A	c.(445-447)GGG>GGA	p.G149G		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	149	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCAGCCAGGGACTGTGTTTC	0.448													35	60					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594388	140594388	+	Silent	SNP	C	T	T	rs137857098		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140594388C>T	uc003lja.1	+	1	880	c.693C>T	c.(691-693)ATC>ATT	p.I231I		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	231	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGTCTACATCGAAGTCCTGG	0.532													50	138					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751569	140751569	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140751569C>T	uc003ljw.1	+	1	1608	c.1608C>T	c.(1606-1608)GAC>GAT	p.D536D	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.D536D|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	536	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGCCCGCGACCAGGGCTCGC	0.692													13	35					0	0	1	0	0
DIAPH1	1729	broad.mit.edu	37	5	140903738	140903738	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:140903738T>C	uc003llb.3	-	28	3774	c.3633A>G	c.(3631-3633)GCA>GCG	p.A1211A	DIAPH1_uc011dbd.1_Silent_p.A105A|DIAPH1_uc003llc.3_Silent_p.A1202A	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	1211	DAD.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCGTCGGAATGCTGCCCCTG	0.557													39	73					0	0	1	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142593624	142593624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:142593624C>T	uc011dbj.1	+	22	2362	c.2327C>T	c.(2326-2328)TCG>TTG	p.S776L	ARHGAP26_uc003lmt.2_Missense_Mutation_p.S721L|ARHGAP26_uc003lmw.2_Missense_Mutation_p.S684L	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	776	SH3.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCAGAACTTTCGTTCACAGCA	0.483													6	15					0	0	1	0	0
KCTD16	57528	broad.mit.edu	37	5	143586533	143586533	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:143586533C>T	uc003lnm.1	+	3	885	c.256C>T	c.(256-258)CTG>TTG	p.L86L	KCTD16_uc003lnn.1_Silent_p.L86L	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	86	BTB.					cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			CCGTTATATTCTGGACTATCT	0.458													12	21					0	0	1	0	0
IL17B	27190	broad.mit.edu	37	5	148754032	148754032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:148754032G>A	uc003lqo.2	-	3	493	c.443C>T	c.(442-444)CCT>CTT	p.P148L		NM_014443	NP_055258	Q9UHF5	IL17B_HUMAN	interleukin 17B precursor	148					cell-cell signaling|immune response|inflammatory response	extracellular space	cytokine activity|signal transducer activity			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGGCGCACAGGAACCTGGCT	0.682													23	47					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149497194	149497194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:149497194G>A	uc003lro.2	-	22	3593	c.3124C>T	c.(3124-3126)CCC>TCC	p.P1042S	PDGFRB_uc010jhd.2_Missense_Mutation_p.P881S	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	1042	Cytoplasmic (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GCTAGGCTGGGGGAACCCTCC	0.527			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								7	49					0	0	1	0	0
PDGFRB	5159	broad.mit.edu	37	5	149497198	149497198	+	Silent	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:149497198A>C	uc003lro.2	-	22	3589	c.3120T>G	c.(3118-3120)GGT>GGG	p.G1040G	PDGFRB_uc010jhd.2_Silent_p.G879G	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	1040	Cytoplasmic (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GGCTGGGGGAACCCTCCAGTG	0.517			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								8	51					0	0	1	0	0
ARSI	340075	broad.mit.edu	37	5	149676816	149676816	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:149676816G>A	uc003lrv.2	-	2	2260	c.1671C>T	c.(1669-1671)TTC>TTT	p.F557F		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	557						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGAGTTTACGGAAAAAGGATC	0.532													32	77					0	0	1	0	0
NDST1	3340	broad.mit.edu	37	5	149918882	149918882	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:149918882C>T	uc003lsk.3	+	7	2032	c.1530C>T	c.(1528-1530)AAC>AAT	p.N510N	NDST1_uc011dcj.1_Silent_p.N510N|NDST1_uc003lsl.2_Silent_p.N510N	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	510	Heparan sulfate N-deacetylase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGATCATCAACGGGGGCGAGC	0.607													43	123					0	0	1	0	0
DCTN4	51164	broad.mit.edu	37	5	150095183	150095183	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:150095183A>G	uc003lsv.2	-	12	1215	c.1113T>C	c.(1111-1113)GAT>GAC	p.D371D	DCTN4_uc003lsu.2_Silent_p.D314D|DCTN4_uc010jhi.2_Silent_p.D378D	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	371						centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGCTGCTGCATCCTTGCCAG	0.498													20	45					0	0	1	0	0
SPARC	6678	broad.mit.edu	37	5	151047122	151047122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:151047122G>A	uc003luh.2	-	6	515	c.491C>T	c.(490-492)CCC>CTC	p.P164L	GM2A_uc011dcs.1_Intron|SPARC_uc003lug.2_5'UTR|SPARC_uc003lui.2_Missense_Mutation_p.P164L	NM_003118	NP_003109	P09486	SPRC_HUMAN	secreted protein, acidic, cysteine-rich	164					ossification|platelet activation|platelet degranulation|signal transduction	basement membrane|extracellular space|platelet alpha granule lumen	calcium ion binding|collagen binding			central_nervous_system(1)	1		Medulloblastoma(196;0.109)|all_hematologic(541;0.122)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;0.00118)	Becaplermin(DB00102)	CATGCGCAGGGGGAATTCGGT	0.597													15	20					0	0	1	0	0
GLRA1	2741	broad.mit.edu	37	5	151234728	151234728	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:151234728C>T	uc003lut.2	-	6	857	c.570G>A	c.(568-570)ACG>ACA	p.T190T	GLRA1_uc003lur.2_Silent_p.T190T|GLRA1_uc003lus.2_Silent_p.T107T	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	190	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGTCATTCATCGTATATCCAA	0.483													29	70					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154395111	154395111	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:154395111A>G	uc010jih.1	+	1	1852	c.1692A>G	c.(1690-1692)CTA>CTG	p.L564L		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	564	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TAAAAAATCTAGAATTAGAAG	0.423													18	36					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154395498	154395498	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:154395498C>T	uc010jih.1	+	1	2239	c.2079C>T	c.(2077-2079)TTC>TTT	p.F693F		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	693	Interaction with PRC1 (By similarity).|Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AAAGAAACTTCCAGAAACAAT	0.433													21	70					0	0	1	0	0
PPP1R2P3	153743	broad.mit.edu	37	5	156278072	156278072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:156278072G>A	uc003lwf.1	+	1	524	c.499G>A	c.(499-501)GAT>AAT	p.D167N		NR_002168				RecName: Full=Putative protein phosphatase inhibitor 2-like protein 3; AltName: Full=Protein phosphatase 1, regulatory subunit 2 pseudogene 3;												0						AGACCTACATGATGATGATGA	0.363													24	65					0	0	1	0	0
HAVCR1	26762	broad.mit.edu	37	5	156479463	156479463	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:156479463C>T	uc010jij.1	-	4	767	c.582G>A	c.(580-582)ACG>ACA	p.T194T	HAVCR1_uc011ddl.1_Silent_p.T25T|HAVCR1_uc003lwi.2_Silent_p.T194T|HAVCR1_uc011ddm.1_Silent_p.T194T	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	189	Extracellular (Potential).|11 X 6 AA approximate tandem repeats of V-P-T-T-T-T].|Thr-rich.|9.				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTGGAATGCTCGTTGTCGTTG	0.463													199	640					0	0	1	0	0
HAVCR2	84868	broad.mit.edu	37	5	156522378	156522378	+	Silent	SNP	G	A	A	rs7727003	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:156522378G>A	uc003lwk.1	-	5	759	c.615C>T	c.(613-615)ATC>ATT	p.I205I		NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	205	Helical; (Potential).					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCCCTGCTCCGATGTAGATGC	0.448													121	348					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156915373	156915373	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:156915373T>C	uc003lwz.2	-	21	2514	c.2450A>G	c.(2449-2451)AAC>AGC	p.N817S	ADAM19_uc003lww.1_Missense_Mutation_p.N550S|ADAM19_uc003lwy.2_Missense_Mutation_p.N416S|ADAM19_uc011ddr.1_Missense_Mutation_p.N748S	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	817	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCCTGGGGAGTTCCTAGCAGC	0.652													36	66					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156946990	156946990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:156946990G>A	uc003lwz.2	-	6	521	c.457C>T	c.(457-459)CCT>TCT	p.P153S	ADAM19_uc003lww.1_5'UTR|ADAM19_uc011ddr.1_Missense_Mutation_p.P84S	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	153					proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTGCTGTCAGGGAGGGGCTCG	0.517													48	88					0	0	1	0	0
SOX30	11063	broad.mit.edu	37	5	157078397	157078397	+	Silent	SNP	G	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:157078397G>C	uc003lxb.1	-	1	1032	c.690C>G	c.(688-690)CCC>CCG	p.P230P	SOX30_uc003lxc.1_Silent_p.P230P|SOX30_uc011dds.1_Intron	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	230					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CATTGGACGCGGGCTCCGCGC	0.642													19	74					0	0	1	0	0
TTC1	7265	broad.mit.edu	37	5	159437713	159437713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:159437713G>A	uc003lxu.2	+	2	228	c.178G>A	c.(178-180)GAG>AAG	p.E60K		NM_003314	NP_003305	Q99614	TTC1_HUMAN	tetratricopeptide repeat domain 1	60					protein folding		unfolded protein binding			skin(1)	1	Renal(175;0.00196)	all_hematologic(541;0.00014)|Breast(839;0.0101)|all_neural(177;0.0281)|Medulloblastoma(196;0.0425)|Lung NSC(249;0.119)|all_lung(500;0.163)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	Epithelial(171;8.37e-05)|all cancers(165;0.000694)|OV - Ovarian serous cystadenocarcinoma(192;0.0402)		CCAGGGAGAAGAGGAGTGTTT	0.507													12	20					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160049476	160049476	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:160049476G>A	uc003lym.1	-	14	2584	c.1737C>T	c.(1735-1737)TCC>TCT	p.S579S	ATP10B_uc010jit.1_5'Flank|ATP10B_uc003lyn.2_Silent_p.S137S	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	579	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AATCAGCAATGGAGGAGGTGG	0.552													14	29					0	0	1	0	0
GABRB2	2561	broad.mit.edu	37	5	160757921	160757921	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:160757921T>C	uc003lys.1	-	9	1264	c.1046A>G	c.(1045-1047)AAC>AGC	p.N349S	GABRB2_uc011deh.1_Missense_Mutation_p.N188S|GABRB2_uc003lyr.1_Missense_Mutation_p.N349S|GABRB2_uc003lyt.1_Missense_Mutation_p.N349S|GABRB2_uc010jiu.1_Missense_Mutation_p.N286S	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	349	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CTTCTCATTGTTGGCACTGGC	0.453													43	93					0	0	1	0	0
GABRA6	2559	broad.mit.edu	37	5	161113261	161113261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:161113261G>A	uc003lyu.2	+	2	402	c.64G>A	c.(64-66)GAA>AAA	p.E22K		NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	22	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AGGGAAACTCGAAGTTGAAGG	0.478										TCGA Ovarian(5;0.080)			25	57					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167589726	167589726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:167589726G>A	uc010jjd.2	+	13	2506	c.2506G>A	c.(2506-2508)GAA>AAA	p.E836K	ODZ2_uc003lzr.3_Missense_Mutation_p.E613K|ODZ2_uc003lzt.3_Missense_Mutation_p.E209K|ODZ2_uc010jje.2_Missense_Mutation_p.E107K|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CGTTGCCATGGAAACTTCCTG	0.542													21	48					0	0	1	0	0
ERGIC1	57222	broad.mit.edu	37	5	172324007	172324009	+	Missense_Mutation	TNP	TCC	CTT	CTT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:172324007_172324009TCC>CTT	uc003mbw.3	+	3	279_281	c.85_87TCC>CTT	c.(85-87)TCC>CTT	p.S29L	ERGIC1_uc003mby.3_5'UTR	NM_001031711	NP_001026881	Q969X5	ERGI1_HUMAN	endoplasmic reticulum-golgi intermediate	29	Helical; (Potential).				ER to Golgi vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	protein binding			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCTTCCAGTCTCCATCTGCTGCT	0.522													7	46					0	0	1	0	0
C5orf41	153222	broad.mit.edu	37	5	172517682	172517682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:172517682C>T	uc003mch.2	+	4	804	c.500C>T	c.(499-501)CCC>CTC	p.P167L	C5orf41_uc003mcg.2_Missense_Mutation_p.P167L|C5orf41_uc003mcf.2_Missense_Mutation_p.P167L|C5orf41_uc011dfd.1_Missense_Mutation_p.P167L	NM_153607	NP_705835	Q8IUR6	CE041_HUMAN	luman-recruiting factor	167							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(175;0.000159)|Lung NSC(126;0.00223)|all_lung(126;0.00391)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AAACAAAATCCCTTACCCTCT	0.433													16	30					0	0	1	0	0
C5orf25	375484	broad.mit.edu	37	5	175722211	175722211	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:175722211C>A	uc003mds.3	+	5	1960	c.1553C>A	c.(1552-1554)TCT>TAT	p.S518Y	C5orf25_uc003mdt.3_Missense_Mutation_p.S103Y|C5orf25_uc003mdr.3_RNA|C5orf25_uc011dfk.1_Missense_Mutation_p.S537Y			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	518											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		CTCAGTGGCTCTGAGACTGTG	0.473													10	46					3.86212e-05	3.88809e-05	1	1	0
UNC5A	90249	broad.mit.edu	37	5	176305340	176305340	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:176305340C>T	uc003mey.2	+	12	2157	c.1965C>T	c.(1963-1965)TCC>TCT	p.S655S		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	655	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGCGCCTATCCATCCACGATG	0.622													51	65					0	0	1	0	0
ZNF346	23567	broad.mit.edu	37	5	176471521	176471521	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:176471521C>T	uc003mfi.2	+	4	547	c.504C>T	c.(502-504)TCC>TCT	p.S168S	ZNF346_uc011dfr.1_Silent_p.S136S|ZNF346_uc011dfs.1_Intron|ZNF346_uc003mfj.2_Intron|ZNF346_uc003mfk.1_Silent_p.S193S|ZNF346_uc011dft.1_Intron	NM_012279	NP_036411	Q9UL40	ZN346_HUMAN	zinc finger protein 346	168						cytoplasm|nucleolus	double-stranded RNA binding|zinc ion binding				0	all_cancers(89;6.3e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGCAGCAGTCCACTAAGGTGG	0.562													21	82					0	0	1	0	0
FGFR4	2264	broad.mit.edu	37	5	176524653	176524653	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:176524653C>T	uc003mfl.2	+	18	2552	c.2385C>T	c.(2383-2385)CCC>CCT	p.P795P	FGFR4_uc003mfm.2_Silent_p.P795P|FGFR4_uc011dfu.1_Silent_p.P727P|FGFR4_uc003mfo.2_Silent_p.P755P	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	795	Cytoplasmic (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	GCTCCTTCCCCTTCGGGTCTG	0.637										TSP Lung(9;0.080)			50	39					0	0	1	0	0
ZNF454	285676	broad.mit.edu	37	5	178392621	178392621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:178392621C>T	uc003mjo.1	+	5	1487	c.1216C>T	c.(1216-1218)CAC>TAC	p.H406Y	ZNF454_uc010jkz.1_Missense_Mutation_p.H406Y	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	406	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TCGGAAAATTCACACTGGAGA	0.418													10	39					0	0	1	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179302127	179302127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:179302127G>A	uc003mlh.2	-	12	1998	c.1961C>T	c.(1960-1962)TCG>TTG	p.S654L	TBC1D9B_uc003mli.2_Missense_Mutation_p.S654L|TBC1D9B_uc003mlj.2_Missense_Mutation_p.S654L|TBC1D9B_uc011dgv.1_5'Flank	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	654	Rab-GAP TBC.					integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CATCTTCTCCGAGAGCTGCGG	0.622													21	52					0	0	1	0	0
CNOT6	57472	broad.mit.edu	37	5	179996161	179996161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:179996161C>T	uc003mlx.2	+	10	1428	c.1079C>T	c.(1078-1080)GCC>GTC	p.A360V	CNOT6_uc010jld.2_Missense_Mutation_p.A360V|CNOT6_uc010jle.2_Missense_Mutation_p.A355V	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	360					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		GTGGCTAACGCCCACATGCAT	0.413													13	60					0	0	1	0	0
BTNL3	10917	broad.mit.edu	37	5	180432688	180432688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:180432688G>A	uc003mmr.2	+	8	1345	c.1217G>A	c.(1216-1218)CGA>CAA	p.R406Q	BTNL3_uc010jlp.2_Missense_Mutation_p.R191Q	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	406	B30.2/SPRY.|Cytoplasmic (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			CCTCCTACACGAGTAGGGGTC	0.483													23	71					0	0	1	0	0
TRIM7	81786	broad.mit.edu	37	5	180622589	180622589	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr5:180622589C>T	uc003mmz.1	-	7	1180	c.1113G>A	c.(1111-1113)CAG>CAA	p.Q371Q	TRIM7_uc003mmv.1_Silent_p.Q189Q|TRIM7_uc003mmw.1_Silent_p.Q163Q|TRIM7_uc003mmx.1_Silent_p.Q163Q|TRIM7_uc003mmy.1_Silent_p.Q163Q	NM_203293	NP_976038	Q9C029	TRIM7_HUMAN	tripartite motif-containing 7 isoform 1	371	B30.2/SPRY.					cytoplasm|nucleus	zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;6.03e-06)|all_epithelial(37;7.1e-07)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000172)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;2e-06)|Epithelial(171;1.35e-05)|OV - Ovarian serous cystadenocarcinoma(192;0.000128)|Kidney(146;0.0674)|GBM - Glioblastoma multiforme(465;0.0802)		TGGGCAGGTCCTGGGCCCGCT	0.682													19	72					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7565712	7565712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:7565712G>A	uc003mxp.1	+	7	1177	c.898G>A	c.(898-900)GAC>AAC	p.D300N	DSP_uc003mxq.1_Missense_Mutation_p.D300N	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	300	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CGACTGGAGCGACAAGAACAC	0.552													9	32					0	0	1	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7987740	7987740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:7987740G>A	uc003mxx.3	+	1	1406	c.971G>A	c.(970-972)CGA>CAA	p.R324Q	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						CATGCACAACGAGAGCCCTTA	0.488													7	20					0	0	1	0	0
GFOD1	54438	broad.mit.edu	37	6	13365764	13365764	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:13365764G>A	uc003nat.1	-	2	1049	c.384C>T	c.(382-384)TTC>TTT	p.F128F	GFOD1_uc003nas.1_Silent_p.F25F	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	128						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			TCATGCGCACGAAAGCCGGCA	0.647													25	54					0	0	1	0	0
RNF182	221687	broad.mit.edu	37	6	13977521	13977521	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:13977521C>T	uc003nbe.2	+	3	589	c.171C>T	c.(169-171)TCC>TCT	p.S57S	RNF182_uc003nbf.2_Silent_p.S57S|RNF182_uc003nbg.2_Silent_p.S57S	NM_152737	NP_689950	Q8N6D2	RN182_HUMAN	ring finger protein 182	57	RING-type.					cytoplasm|integral to membrane|intracellular membrane-bounded organelle	protein binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Breast(50;0.00405)|Ovarian(93;0.0964)	all_hematologic(90;0.135)	Epithelial(50;0.195)			TTGGGGACTCCCCACAAGGTG	0.463													28	100					0	0	1	0	0
ATXN1	6310	broad.mit.edu	37	6	16327060	16327060	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:16327060G>A	uc003nbt.2	-	8	2453	c.1482C>T	c.(1480-1482)GTC>GTT	p.V494V	ATXN1_uc010jpi.2_Silent_p.V494V|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	494	Self-association.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CAGTGCTGCCGACCGGGATGA	0.662													40	104					0	0	1	0	0
ATXN1	6310	broad.mit.edu	37	6	16328529	16328529	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:16328529G>A	uc003nbt.2	-	8	984	c.13C>T	c.(13-15)CAA>TAA	p.Q5*	ATXN1_uc010jpi.2_Nonsense_Mutation_p.Q5*|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	5					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CTCCGCTCTTGGTTGGATTTC	0.557													12	29					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28541289	28541289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:28541289C>T	uc003nlo.2	-	4	2995	c.2377G>A	c.(2377-2379)GAA>AAA	p.E793K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	793					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						tcaaagaattcttttggttgt	0													12	31					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28541392	28541392	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:28541392C>T	uc003nlo.2	-	4	2892	c.2274G>A	c.(2272-2274)CAG>CAA	p.Q758Q		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	758					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						aaataatacactgtggtttta	0													12	24					0	0	1	0	0
OR2W1	26692	broad.mit.edu	37	6	29012117	29012117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:29012117G>A	uc003nlw.2	-	1	836	c.836C>T	c.(835-837)ACC>ATC	p.T279I		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AGTGATGACGGTGTAAAAGAG	0.433													16	20					0	0	1	0	0
OR2B3	442184	broad.mit.edu	37	6	29054754	29054754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:29054754G>A	uc003nlx.2	-	1	337	c.272C>T	c.(271-273)ACC>ATC	p.T91I		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						ATAGCTGATGGTCTTTTTGTT	0.448													25	54					0	0	1	0	0
OR5V1	81696	broad.mit.edu	37	6	29323635	29323635	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:29323635A>G	uc011dlo.1	-	1	420	c.338T>C	c.(337-339)CTC>CCC	p.L113P		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						TGCCAGTAGGAGACACTCTGA	0.403													20	45					0	0	1	0	0
OR2H2	7932	broad.mit.edu	37	6	29556057	29556057	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:29556057C>T	uc003nmr.1	+	1	375	c.336C>T	c.(334-336)CTC>CTT	p.L112L	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	112	Helical; Name=3; (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGTGCATCCTCTTGACAGTGA	0.577													34	114					0	0	1	0	0
TRIM26	7726	broad.mit.edu	37	6	30166566	30166566	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:30166566G>A	uc003npr.2	-	3	524	c.315C>T	c.(313-315)CAC>CAT	p.H105H	TRIM26_uc003nps.2_Silent_p.H105H|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Silent_p.H105H|TRIM26_uc003npu.1_Silent_p.H105H	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	105	B box-type.						DNA binding|zinc ion binding			ovary(2)|lung(1)	3						GCTTCTCTCGGTGTCGCTCGC	0.642													27	56					0	0	1	0	0
DDR1	780	broad.mit.edu	37	6	30863237	30863237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:30863237C>T	uc003nrr.2	+	13	1829	c.1570C>T	c.(1570-1572)CCT>TCT	p.P524S	DDR1_uc010jse.2_Intron|DDR1_uc003nrq.2_Intron|DDR1_uc003nrs.2_Missense_Mutation_p.P524S|DDR1_uc003nrt.2_Intron|DDR1_uc011dms.1_Intron|DDR1_uc003nru.2_Intron|DDR1_uc003nrv.2_Missense_Mutation_p.P524S|DDR1_uc003nrw.1_Silent_p.P295P|DDR1_uc003nry.1_Intron|DDR1_uc003nrx.1_Intron|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	524	Gly/Pro-rich.|Cytoplasmic (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CGCCCGTCCCCCTCGAGGCCC	0.677													71	169					0	0	1	0	0
GTF2H4	2968	broad.mit.edu	37	6	30879243	30879243	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:30879243C>T	uc003nsa.1	+	8	915	c.708C>T	c.(706-708)TTC>TTT	p.F236F	GTF2H4_uc010jsf.2_Silent_p.F236F|GTF2H4_uc011dmv.1_Silent_p.F180F|GTF2H4_uc003nsb.1_Silent_p.F74F|GTF2H4_uc011dmw.1_Silent_p.F242F|VARS2_uc003nsc.1_5'Flank|VARS2_uc003nsd.2_5'Flank|VARS2_uc011dmx.1_5'Flank|VARS2_uc011dmy.1_5'Flank|VARS2_uc011dmz.1_5'Flank	NM_001517	NP_001508	Q92759	TF2H4_HUMAN	general transcription factor IIH, polypeptide 4,	236					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3						TTCTCTCCTTCCTCTTCCAGC	0.542								NER					28	70					0	0	1	0	0
VARS2	57176	broad.mit.edu	37	6	30886611	30886611	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:30886611G>A	uc003nsc.1	+	10	1625	c.993G>A	c.(991-993)GAG>GAA	p.E331E	VARS2_uc011dmx.1_Silent_p.E331E|VARS2_uc011dmy.1_Silent_p.E191E|VARS2_uc011dmz.1_Silent_p.E361E|VARS2_uc011dna.1_Silent_p.E331E|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_5'UTR|VARS2_uc010jsg.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	331					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						CAGATGCAGAGGTTGTGGTAG	0.512													13	37					0	0	1	0	0
CCHCR1	54535	broad.mit.edu	37	6	31122394	31122394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:31122394G>A	uc003nsr.3	-	4	536	c.413C>T	c.(412-414)GCC>GTC	p.A138V	CCHCR1_uc011dne.1_Missense_Mutation_p.A138V|CCHCR1_uc003nsq.3_Missense_Mutation_p.A191V|CCHCR1_uc003nsp.3_Missense_Mutation_p.A227V|CCHCR1_uc010jsk.1_Missense_Mutation_p.A138V	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	138	Potential.				cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						AGCTCGGCCGGCCTTCTCCGC	0.662													75	194					0	0	1	0	0
LY6G6F	259215	broad.mit.edu	37	6	31677886	31677886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:31677886G>A	uc003nwa.1	+	4	730	c.730G>A	c.(730-732)GGC>AGC	p.G244S	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Missense_Mutation_p.G244S	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	244	Helical; (Potential).					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						GCTCACAATGGGCCAGGGAGT	0.622													153	309					0	0	1	0	0
VARS	7407	broad.mit.edu	37	6	31753447	31753447	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:31753447G>A	uc003nxe.2	-	9	1587	c.1164C>T	c.(1162-1164)ACC>ACT	p.T388T	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	388					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CCACCACCTGGGTGGCAATAC	0.632													121	211					0	0	1	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778766	31778766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:31778766C>T	uc003nxh.2	-	2	1167	c.984G>A	c.(982-984)ATG>ATA	p.M328I	HSPA1L_uc010jte.2_Missense_Mutation_p.M328I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	328					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TAGCCTTATCCATCTTGGCAT	0.502													206	438					0	0	1	0	0
SKIV2L	6499	broad.mit.edu	37	6	31932030	31932030	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:31932030C>T	uc003nyn.1	+	17	2271	c.1882C>T	c.(1882-1884)CTG>TTG	p.L628L	SKIV2L_uc011dou.1_Silent_p.L470L|SKIV2L_uc011dov.1_Silent_p.L435L	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	628	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						GTCAGAGCTCCTGAATCGCGG	0.592													108	252					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32163515	32163515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:32163515C>T	uc003obb.2	-	30	5850	c.5711G>A	c.(5710-5712)GGA>GAA	p.G1904E	GPSM3_uc003oax.3_5'Flank|GPSM3_uc003oay.3_5'Flank|GPSM3_uc003oaz.2_5'Flank|NOTCH4_uc011dpt.1_3'UTR|NOTCH4_uc003oba.2_Missense_Mutation_p.G564E|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1904	Cytoplasmic (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						TCCTCCTGCTCCTACTCCCGA	0.672													80	149					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33133414	33133414	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:33133414G>A	uc003ocx.1	-	63	4890	c.4662C>T	c.(4660-4662)ATC>ATT	p.I1554I	COL11A2_uc010jul.1_Silent_p.I124I|COL11A2_uc003ocy.1_Silent_p.I1468I|COL11A2_uc003ocz.1_Silent_p.I1447I	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1554	Fibrillar collagen NC1.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TCATCTGCTCGATCTCCTCCC	0.652													40	71					0	0	1	0	0
ZBTB22	9278	broad.mit.edu	37	6	33283250	33283250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:33283250C>T	uc003oeb.2	-	2	1596	c.1444G>A	c.(1444-1446)GGG>AGG	p.G482R	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.G482R	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	482					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATCTTATTCCCGTCCCCACTG	0.632													58	145					0	0	1	0	0
ZBTB22	9278	broad.mit.edu	37	6	33283839	33283840	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:33283839_33283840GG>AA	uc003oeb.2	-	2	1006_1007	c.854_855CC>TT	c.(853-855)ACC>ATT	p.T285I	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.T285I	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	285					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGGGTGTGTAGGTGGGTCTCCG	0.609													53	20					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34026879	34026879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:34026879G>A	uc003oir.3	-	4	1069	c.899C>T	c.(898-900)GCC>GTC	p.A300V	GRM4_uc011dsn.1_Missense_Mutation_p.A300V|GRM4_uc010jvh.2_Missense_Mutation_p.A300V|GRM4_uc010jvi.2_5'UTR|GRM4_uc003oio.2_5'UTR|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.A160V|GRM4_uc003oiq.2_Missense_Mutation_p.A167V|GRM4_uc011dsm.1_Missense_Mutation_p.A131V	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	300	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	TGTCTGGTTGGCCCTTCGTGC	0.622													18	37					0	0	1	0	0
PACSIN1	29993	broad.mit.edu	37	6	34497569	34497569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:34497569G>A	uc003ojo.2	+	6	945	c.739G>A	c.(739-741)GAG>AAG	p.E247K	PACSIN1_uc003ojp.2_Missense_Mutation_p.E247K	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	247					endocytosis		protein kinase activity				0						CTTCCTCAAGGAGGTGCTGCT	0.572													8	21					0	0	1	0	0
PPARD	5467	broad.mit.edu	37	6	35392314	35392314	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:35392314T>C	uc003okm.2	+	7	1145	c.836T>C	c.(835-837)GTT>GCT	p.V279A	PPARD_uc003okl.2_Missense_Mutation_p.V279A|PPARD_uc003okn.2_Missense_Mutation_p.V279A|PPARD_uc011dtb.1_Missense_Mutation_p.V240A|PPARD_uc011dtc.1_Missense_Mutation_p.V181A	NM_006238	NP_006229	Q03181	PPARD_HUMAN	peroxisome proliferative activated receptor,	279	Ligand-binding.				apoptosis|axon ensheathment|cholesterol metabolic process|decidualization|embryo implantation|fatty acid beta-oxidation|fatty acid transport|generation of precursor metabolites and energy|glucose metabolic process|glucose transport|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fat cell differentiation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|linoleic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1					Icosapent(DB00159)|Sulindac(DB00605)|Treprostinil(DB00374)	AACGACCAGGTTACCCTTCTC	0.592													12	37					0	0	1	0	0
TULP1	7287	broad.mit.edu	37	6	35477426	35477426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:35477426C>T	uc003okv.3	-	7	715	c.703G>A	c.(703-705)GCC>ACC	p.A235T	TULP1_uc003okw.3_Missense_Mutation_p.A182T	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	235					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						TTCTTCAGGGCTTTCTTGTCA	0.597													41	66					0	0	1	0	0
C6orf222	389384	broad.mit.edu	37	6	36298397	36298397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:36298397G>A	uc003oly.2	-	2	249	c.71C>T	c.(70-72)GCC>GTC	p.A24V		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	24										skin(2)|ovary(1)|breast(1)	4						TTTCCCGGGGGCCTGCGGCCT	0.637													50	32					0	0	1	0	0
C6orf129	154467	broad.mit.edu	37	6	37452896	37452896	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:37452896C>T	uc003ont.2	-	2	178	c.117G>A	c.(115-117)CGG>CGA	p.R39R		NM_138493	NP_612502	Q9P0B6	CF129_HUMAN	hypothetical protein LOC154467	39	Potential.					integral to membrane					0						GGCTCAGCTCCCGGCTGTGGA	0.622													42	27					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40400332	40400332	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:40400332T>C	uc003oph.1	-	2	986	c.521A>G	c.(520-522)AAC>AGC	p.N174S		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	174	Extracellular (Potential).|LRR 6.					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CTGGTGGAGGTTGACCATGCG	0.587													21	53					0	0	1	0	0
PTK7	5754	broad.mit.edu	37	6	43107157	43107157	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:43107157C>T	uc003oub.1	+	10	1710	c.1512C>T	c.(1510-1512)TTC>TTT	p.F504F	PTK7_uc003ouc.1_Silent_p.F504F|PTK7_uc003oud.1_Intron|PTK7_uc003oue.1_Intron|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Silent_p.F512F|PTK7_uc010jyj.1_Intron	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	504	Ig-like C2-type 6.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			AGCTCAAGTTCACACCACCAC	0.592													15	35					0	0	1	0	0
ABCC10	89845	broad.mit.edu	37	6	43403587	43403587	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:43403587C>T	uc003ouy.1	+	5	1922	c.1707C>T	c.(1705-1707)GAC>GAT	p.D569D	ABCC10_uc003ouz.1_Silent_p.D526D|ABCC10_uc010jyo.1_5'UTR	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	569						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			TGTCCTTGGACCGGATCCAGC	0.562													28	51					0	0	1	0	0
ABCC10	89845	broad.mit.edu	37	6	43413539	43413539	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:43413539A>G	uc003ouy.1	+	15	3448	c.3233A>G	c.(3232-3234)TAC>TGC	p.Y1078C	ABCC10_uc003ouz.1_Missense_Mutation_p.Y1050C|ABCC10_uc010jyo.1_Missense_Mutation_p.Y184C	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	1078	ABC transmembrane type-1 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			AGCATCATGTACTATCACGTG	0.662													14	51					0	0	1	0	0
CAPN11	11131	broad.mit.edu	37	6	44141075	44141075	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:44141075C>T	uc003owt.1	+	7	821	c.783C>T	c.(781-783)CTC>CTT	p.L261L		NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	261	Calpain catalytic.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TGCTCAGGCTCCTTAGGAAGG	0.418													14	24					0	0	1	0	0
CDC5L	988	broad.mit.edu	37	6	44392179	44392179	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:44392179C>T	uc003oxl.2	+	11	1687	c.1428C>T	c.(1426-1428)CTC>CTT	p.L476L		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	476	Interaction with PPP1R8.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GAGAACATCTCCGTTTAGGGT	0.388													22	25					0	0	1	0	0
TDRD6	221400	broad.mit.edu	37	6	46657203	46657203	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:46657203C>T	uc003oyj.2	+	1	1338	c.1338C>T	c.(1336-1338)GTC>GTT	p.V446V	TDRD6_uc010jze.2_Silent_p.V440V	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	446					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			CTGACCGAGTCCTTCAGAGCC	0.478													24	47					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46803009	46803009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:46803009G>A	uc010jzh.1	+	13	1849	c.1807G>A	c.(1807-1809)GAA>AAA	p.E603K	MEP1A_uc011dwg.1_Missense_Mutation_p.E325K|MEP1A_uc011dwh.1_Missense_Mutation_p.E631K|MEP1A_uc011dwi.1_Missense_Mutation_p.E503K	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	603	Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			CAGCCAGACTGAAGTTCCCAC	0.488													3	10					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46846012	46846012	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:46846012C>T	uc003oyo.3	-	10	1456	c.1167G>A	c.(1165-1167)TTG>TTA	p.L389L	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Silent_p.L389L|GPR116_uc010jzi.1_Silent_p.L61L|GPR116_uc003oyr.2_Silent_p.L389L	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	389	Ig-like 2.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			TGCAGCAGTTCAAAGATACAG	0.368													13	45					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46846023	46846023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:46846023G>A	uc003oyo.3	-	10	1445	c.1156C>T	c.(1156-1158)CCT>TCT	p.P386S	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Missense_Mutation_p.P386S|GPR116_uc010jzi.1_Missense_Mutation_p.P58S|GPR116_uc003oyr.2_Missense_Mutation_p.P386S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	386	Ig-like 2.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AAAGATACAGGATTGTTGTCG	0.353													14	45					0	0	1	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47253756	47253756	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:47253756G>A	uc003oyv.2	-	2	1105	c.672C>T	c.(670-672)TCC>TCT	p.S224S		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	224	Extracellular (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			CTGTGCCAGGGGAAGGTGAGG	0.527													19	35					0	0	1	0	0
GPR111	222611	broad.mit.edu	37	6	47649895	47649895	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:47649895T>A	uc010jzj.1	+	6	1601	c.1600T>A	c.(1600-1602)TTC>ATC	p.F534I	GPR111_uc010jzk.1_Missense_Mutation_p.F466I|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	534	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TTCTGTATTTTTCTGGATGCT	0.443													12	35					0	0	1	0	0
RHAG	6005	broad.mit.edu	37	6	49604372	49604372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:49604372G>A	uc003ozk.3	-	1	216	c.154C>T	c.(154-156)CCT>TCT	p.P52S	RHAG_uc010jzl.2_Missense_Mutation_p.P52S|RHAG_uc010jzm.2_Missense_Mutation_p.P52S	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	52	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					TACTCACGAGGATATAACTCA	0.368													21	65					0	0	1	0	0
CRISP1	167	broad.mit.edu	37	6	49808679	49808679	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:49808679G>A	uc003ozw.2	-	6	544	c.465C>T	c.(463-465)GGC>GGT	p.G155G	CRISP1_uc003ozx.2_Silent_p.G155G	NM_001131	NP_001122	P54107	CRIS1_HUMAN	acidic epididymal glycoprotein-like 1 isoform 1	155					fusion of sperm to egg plasma membrane	extracellular space					0	Lung NSC(77;0.0358)					CAATGGCACAGCCAATCAGGT	0.328													9	23					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54806553	54806553	+	Silent	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:54806553A>T	uc003pck.2	+	5	2900	c.2784A>T	c.(2782-2784)TCA>TCT	p.S928S		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	928										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GATCTCATTCAACTGATCGGC	0.443													19	46					0	0	1	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55360232	55360232	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:55360232G>A	uc003pcn.2	-	8	1029	c.870C>T	c.(868-870)ATC>ATT	p.I290I	HMGCLL1_uc003pco.2_Silent_p.I260I|HMGCLL1_uc010jzx.2_Silent_p.I161I|HMGCLL1_uc011dxc.1_Silent_p.I228I|HMGCLL1_uc011dxd.1_Silent_p.I157I|HMGCLL1_uc011dxe.1_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	290							hydroxymethylglutaryl-CoA lyase activity|metal ion binding	p.I290F(1)		skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			GGGCCGTAAGGATATTTGCTA	0.388													11	20					0	0	1	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55360348	55360348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:55360348C>T	uc003pcn.2	-	8	913	c.754G>A	c.(754-756)GGA>AGA	p.G252R	HMGCLL1_uc003pco.2_Missense_Mutation_p.G222R|HMGCLL1_uc010jzx.2_Missense_Mutation_p.G123R|HMGCLL1_uc011dxc.1_Missense_Mutation_p.G190R|HMGCLL1_uc011dxd.1_Missense_Mutation_p.G119R|HMGCLL1_uc011dxe.1_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	252							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			GTTCCCACTCCAATTGTGTCT	0.418													14	28					0	0	1	0	0
DST	667	broad.mit.edu	37	6	56374636	56374636	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:56374636C>T	uc003pdf.2	-	68	12487	c.12459G>A	c.(12457-12459)CTG>CTA	p.L4153L	DST_uc003pcz.3_Silent_p.L3975L|DST_uc011dxj.1_Silent_p.L4004L|DST_uc011dxk.1_Silent_p.L4015L|DST_uc003pcy.3_Silent_p.L3649L	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	6061	Spectrin 12.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CGATGCGTTCCAGGCTCTCAA	0.413													11	45					0	0	1	0	0
DST	667	broad.mit.edu	37	6	56400020	56400020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:56400020G>A	uc003pdf.2	-	57	10512	c.10484C>T	c.(10483-10485)TCC>TTC	p.S3495F	DST_uc003pcz.3_Missense_Mutation_p.S3317F|DST_uc011dxj.1_Missense_Mutation_p.S3346F|DST_uc011dxk.1_Missense_Mutation_p.S3357F|DST_uc003pcy.3_Missense_Mutation_p.S2991F	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	5403	Spectrin 8.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			GCTGAGCAGGGACTCCAGGGC	0.557													41	73					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73751747	73751747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:73751747G>A	uc003pgk.2	+	3	925	c.578G>A	c.(577-579)GGA>GAA	p.G193E	KCNQ5_uc003pgj.3_Missense_Mutation_p.G193E|KCNQ5_uc011dyh.1_Missense_Mutation_p.G193E|KCNQ5_uc011dyi.1_Missense_Mutation_p.G193E|KCNQ5_uc010kat.2_Missense_Mutation_p.G193E|KCNQ5_uc011dyj.1_Missense_Mutation_p.G193E|KCNQ5_uc011dyk.1_Intron	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	193					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GGATGGCAAGGAAGACTGAGG	0.438													53	46					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75797356	75797356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:75797356G>A	uc003phs.2	-	65	9284	c.9118C>T	c.(9118-9120)CCT>TCT	p.P3040S	COL12A1_uc003pht.2_Missense_Mutation_p.P1876S	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	3040	Triple-helical region (COL1) with 2 imperfections.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TATCCAGGAGGACCTGGGGGT	0.577													41	34					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76124489	76124489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:76124489C>T	uc003pia.2	-	2	573	c.200G>A	c.(199-201)CGA>CAA	p.R67Q	FILIP1_uc003phy.1_Missense_Mutation_p.R67Q|FILIP1_uc010kbe.2_Missense_Mutation_p.R70Q	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	67										skin(3)|ovary(1)	4						CTTAGTTTTTCGTTCACATTC	0.408													73	63					0	0	1	0	0
SNAP91	9892	broad.mit.edu	37	6	84269849	84269849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:84269849C>T	uc011dze.1	-	27	2922	c.2605G>A	c.(2605-2607)GGA>AGA	p.G869R	SNAP91_uc011dzd.1_Missense_Mutation_p.G367R|SNAP91_uc003pkb.2_Missense_Mutation_p.G778R|SNAP91_uc003pkc.2_Missense_Mutation_p.G839R|SNAP91_uc003pkd.2_Missense_Mutation_p.G562R|SNAP91_uc003pka.2_Missense_Mutation_p.G867R	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	869	Pro-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		GCGGCAGCTCCAAAGGGGGGC	0.507													20	35					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	93974317	93974317	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:93974317C>T	uc003poe.2	-	8	1978	c.1737G>A	c.(1735-1737)GGG>GGA	p.G579G	EPHA7_uc003pof.2_Silent_p.G574G|EPHA7_uc011eac.1_Silent_p.G579G	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	579	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TCTACCTTCTCCCAATGATGA	0.348													17	21					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	94067992	94067992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:94067992G>A	uc003poe.2	-	4	1211	c.970C>T	c.(970-972)CCA>TCA	p.P324S	EPHA7_uc003pof.2_Missense_Mutation_p.P324S|EPHA7_uc011eac.1_Missense_Mutation_p.P324S	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	324	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GCAACGTATGGTGGGTCAGAT	0.418													22	37					0	0	1	0	0
POU3F2	5454	broad.mit.edu	37	6	99283557	99283557	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:99283557C>T	uc003ppe.2	+	1	978	c.808C>T	c.(808-810)CTG>TTG	p.L270L		NM_005604	NP_005595	P20265	PO3F2_HUMAN	POU domain, class 3, transcription factor 2	270	POU-specific.				positive regulation of cell proliferation		identical protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0355)		CTCGGACGACCTGGAGCAGTT	0.582													51	66					0	0	1	0	0
MCHR2	84539	broad.mit.edu	37	6	100368879	100368879	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:100368879G>A	uc003pqh.1	-	6	1275	c.960C>T	c.(958-960)ATC>ATT	p.I320I	MCHR2_uc003pqi.1_Silent_p.I320I	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	320	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		CTCTTCTTTGGATTTGAGGCA	0.423													33	37					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	102516257	102516257	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:102516257G>A	uc003pqp.3	+	16	2847	c.2598G>A	c.(2596-2598)AGG>AGA	p.R866R	GRIK2_uc003pqo.3_3'UTR|GRIK2_uc010kcw.2_3'UTR	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	866	Cytoplasmic (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	AAGAATTGAGGATGTCCCTGA	0.388													14	23					0	0	1	0	0
SLC22A16	85413	broad.mit.edu	37	6	110746124	110746124	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:110746124C>T	uc003puf.2	-	8	1753	c.1686G>A	c.(1684-1686)CTG>CTA	p.L562L	SLC22A16_uc003pue.2_Silent_p.L543L	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	562					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		CCGTTTTTTCCAGCCCACTAT	0.443													20	51					0	0	1	0	0
SLC22A16	85413	broad.mit.edu	37	6	110752417	110752417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:110752417G>A	uc003puf.2	-	7	1545	c.1478C>T	c.(1477-1479)CCG>CTG	p.P493L	SLC22A16_uc003pue.2_Missense_Mutation_p.P474L	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	493	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		CACAGAGAACGGCGCCAGGAT	0.572													23	27					0	0	1	0	0
RFX6	222546	broad.mit.edu	37	6	117246749	117246749	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:117246749C>T	uc003pxm.2	+	16	1875	c.1812C>T	c.(1810-1812)TCC>TCT	p.S604S		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	604					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CTCTGCCATCCAGTCAACCTG	0.542													17	23					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117710693	117710693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:117710693C>T	uc003pxp.1	-	12	1778	c.1579G>A	c.(1579-1581)GAA>AAA	p.E527K	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	527	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ACGATGAATTCATTAAAAGAC	0.448			T	GOPC|ROS1	glioblastoma|NSCLC								18	26					0	0	1	0	0
STL	7955	broad.mit.edu	37	6	125232330	125232330	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:125232330C>T	uc003pzq.2	-	7		c.2404G>A				NR_026876				Homo sapiens mRNA; cDNA DKFZp451I132 (from clone DKFZp451I132).												0						ATATGAATATCAATAAAACCC	0.423			T	ETV6	B-ALL								4	3					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128304414	128304414	+	Silent	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:128304414A>T	uc003qbk.2	-	23	3724	c.3357T>A	c.(3355-3357)TCT>TCA	p.S1119S	PTPRK_uc003qbj.2_Silent_p.S1120S|PTPRK_uc010kfc.2_Silent_p.S1126S|PTPRK_uc011ebu.1_Silent_p.S1142S	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1119	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TAATACGCCGAGATCTTAAGG	0.373													5	5					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128410983	128410983	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:128410983C>T	uc003qbk.2	-	8	1684	c.1317G>A	c.(1315-1317)AAG>AAA	p.K439K	PTPRK_uc003qbj.2_Silent_p.K439K|PTPRK_uc010kfc.2_Silent_p.K439K|PTPRK_uc011ebu.1_Silent_p.K439K|PTPRK_uc003qbl.1_Silent_p.K309K|PTPRK_uc011ebv.1_Silent_p.K439K	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	439	Extracellular (Potential).|Fibronectin type-III 2.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AACAGTCTGCCTTGCTCTCGT	0.478													21	25					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129498908	129498908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:129498908G>A	uc003qbn.2	+	10	1469	c.1364G>A	c.(1363-1365)CGG>CAG	p.R455Q	LAMA2_uc003qbo.2_Missense_Mutation_p.R455Q	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	455	Laminin EGF-like 3.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AGCTGTGATCGGTGTGCCAGG	0.483													12	29					0	0	1	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130381273	130381273	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:130381273C>T	uc003qbt.2	+	10	1022	c.852C>T	c.(850-852)CTC>CTT	p.L284L	L3MBTL3_uc003qbu.2_Silent_p.L259L	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	284	MBT 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		ACTGTGTCCTCACCGTCGCGG	0.343													9	10					0	0	1	0	0
TAAR6	319100	broad.mit.edu	37	6	132891816	132891816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:132891816C>T	uc011eck.1	+	1	356	c.356C>T	c.(355-357)TCT>TTT	p.S119F		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	119	Helical; Name=3; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TGTTACTCTTCTCTCTTTCAC	0.483													45	92					0	0	1	0	0
AHI1	54806	broad.mit.edu	37	6	135787209	135787209	+	Silent	SNP	G	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:135787209G>C	uc003qgi.2	-	7	876	c.492C>G	c.(490-492)GGC>GGG	p.G164G	AHI1_uc003qgh.2_Silent_p.G164G|AHI1_uc003qgj.2_Silent_p.G164G|AHI1_uc003qgk.3_RNA|AHI1_uc003qgl.3_Silent_p.G164G	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	164						adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		GATGATCAACGCCTGGCTGTG	0.443													38	36					0	0	1	0	0
HECA	51696	broad.mit.edu	37	6	139487510	139487510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:139487510G>A	uc003qin.2	+	2	646	c.361G>A	c.(361-363)GAG>AAG	p.E121K		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	121					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		GTGCAACAACGAGCACTGCCC	0.627													35	38					0	0	1	0	0
ZC3H12D	340152	broad.mit.edu	37	6	149795614	149795614	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:149795614C>T	uc003qmn.1	-	1	136	c.66G>A	c.(64-66)CGG>CGA	p.R22R	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Silent_p.R22R|ZC3H12D_uc010kid.2_Silent_p.R22R	NM_207360	NP_997243	A2A288	ZC12D_HUMAN	zinc finger CCCH-type containing 12D	22						cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		TGCCCAACACCCGGAGCACAT	0.682													3	4					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152772238	152772238	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:152772238G>A	uc010kiw.2	-	26	3732	c.3130C>T	c.(3130-3132)CGA>TGA	p.R1044*	SYNE1_uc003qot.3_Nonsense_Mutation_p.R1051*|SYNE1_uc003qou.3_Nonsense_Mutation_p.R1044*|SYNE1_uc010kjb.1_Nonsense_Mutation_p.R1027*|SYNE1_uc003qow.2_Nonsense_Mutation_p.R339*|SYNE1_uc003qox.1_Nonsense_Mutation_p.R560*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1044	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTGGTCTCTCGATCCAGCTCA	0.463										HNSCC(10;0.0054)			57	40					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152831444	152831444	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:152831444C>T	uc010kiw.2	-	8	1067	c.465G>A	c.(463-465)GTG>GTA	p.V155V	SYNE1_uc003qot.3_Silent_p.V162V|SYNE1_uc003qou.3_Silent_p.V155V|SYNE1_uc010kjb.1_Silent_p.V155V|SYNE1_uc003qpa.1_Silent_p.V155V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	155	Actin-binding.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTATGCTGTCCACGGAGGATG	0.478										HNSCC(10;0.0054)			21	34					0	0	1	0	0
RBM16	22828	broad.mit.edu	37	6	155152088	155152088	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:155152088G>T	uc003qqa.2	+	20	2405	c.2173G>T	c.(2173-2175)GAA>TAA	p.E725*	TIAM2_uc003qqb.2_5'Flank|RBM16_uc011efj.1_Nonsense_Mutation_p.E791*|RBM16_uc011efk.1_Nonsense_Mutation_p.E770*|RBM16_uc003qpz.2_Nonsense_Mutation_p.E725*|RBM16_uc010kji.2_Nonsense_Mutation_p.E746*	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	725	Pro-rich.				mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		CATGACACCGGAAACTGTGAA	0.408													19	41					2.39187e-15	2.44078e-15	1	1	0
SYNJ2	8871	broad.mit.edu	37	6	158517144	158517144	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:158517144C>T	uc003qqx.1	+	27	4314	c.4239C>T	c.(4237-4239)GAC>GAT	p.D1413D	SYNJ2_uc003qqy.1_Silent_p.D1126D|SYNJ2_uc003qqz.1_Silent_p.D1030D|SYNJ2_uc003qra.1_Silent_p.D756D|SYNJ2_uc010kjp.1_Silent_p.D296D	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1413	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		ATTATCAGGACCCCTTCTGGA	0.517													24	43					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159644600	159644600	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:159644600G>A	uc010kjv.2	+	7	1007	c.807G>A	c.(805-807)CGG>CGA	p.R269R	FNDC1_uc010kjw.1_Silent_p.R217R	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	269	Fibronectin type-III 3.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TCAGCGTCCGGGTTATGTCAT	0.458													8	18					0	0	1	0	0
TCP10	6953	broad.mit.edu	37	6	167790034	167790034	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:167790034C>T	uc003qvv.1	-	5	788	c.576G>A	c.(574-576)AAG>AAA	p.K192K	TCP10_uc003qvu.2_Silent_p.K192K|TCP10_uc003qvw.2_Silent_p.K168K	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	219						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		CCGAGGTCACCTTTCCGTCTT	0.507													30	49					0	0	1	0	0
FRMD1	79981	broad.mit.edu	37	6	168458000	168458000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:168458000C>T	uc003qwo.3	-	11	1492	c.1427G>A	c.(1426-1428)GGG>GAG	p.G476E	FRMD1_uc003qwm.3_Missense_Mutation_p.G270E|FRMD1_uc011egs.1_Missense_Mutation_p.G247E|FRMD1_uc011egt.1_Missense_Mutation_p.G411E|FRMD1_uc003qwn.3_Missense_Mutation_p.G408E	NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	476						cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		CTCACTGACCCCGGCTGTCAT	0.662													6	16					0	0	1	0	0
THBS2	7058	broad.mit.edu	37	6	169648878	169648878	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:169648878C>T	uc003qwt.2	-	4	491	c.243G>A	c.(241-243)AAG>AAA	p.K81K		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	81	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		AGAAGCCCTCCTTCTGCCGCA	0.632													21	28					0	0	1	0	0
MICALL2	79778	broad.mit.edu	37	7	1484998	1484998	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:1484998G>A	uc003skj.3	-	6	855	c.708C>T	c.(706-708)TTC>TTT	p.F236F	MICALL2_uc003ski.3_5'Flank	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	236	LIM zinc-binding.					cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		TGGTGCAGACGAAGGTGCCCG	0.677													6	7					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2979560	2979560	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:2979560G>A	uc003smv.2	-	6	1091	c.687C>T	c.(685-687)ATC>ATT	p.I229I		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	229	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TTAGCTGATCGATCTGAAATA	0.498			Mis		DLBCL								23	69					0	0	1	0	0
COL28A1	340267	broad.mit.edu	37	7	7516760	7516760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:7516760C>T	uc003src.1	-	14	1333	c.1216G>A	c.(1216-1218)GGA>AGA	p.G406R	COL28A1_uc011jxe.1_Missense_Mutation_p.G89R|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	406					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CCTGGAAATCCTTCTCCGGGT	0.373													25	54					0	0	1	0	0
COL28A1	340267	broad.mit.edu	37	7	7571467	7571467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:7571467C>T	uc003src.1	-	3	310	c.193G>A	c.(193-195)GAT>AAT	p.D65N	COL28A1_uc011jxe.1_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	65	VWFA 1.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TTCTGTTTATCAAAGAGGGCA	0.388													15	40					0	0	1	0	0
PHF14	9678	broad.mit.edu	37	7	11022442	11022442	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:11022442C>T	uc003sry.1	+	3	991	c.556C>T	c.(556-558)CGA>TGA	p.R186*	PHF14_uc011jxi.1_Intron|PHF14_uc003srz.2_Nonsense_Mutation_p.R186*|PHF14_uc011jxj.1_Intron	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	186							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		ATGGAACCTTCGACGAAACCG	0.483													12	34					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11676051	11676051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:11676051G>A	uc003ssf.3	-	2	980	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	243	Extracellular (Potential).|TSP type-1 2.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GCATGGACTGGATTGGCACAC	0.642										HNSCC(18;0.044)			7	25					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18788706	18788706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:18788706G>A	uc003suh.2	+	13	2020	c.1979G>A	c.(1978-1980)CGA>CAA	p.R660Q	HDAC9_uc003sue.2_Missense_Mutation_p.R660Q|HDAC9_uc011jyd.1_Missense_Mutation_p.R660Q|HDAC9_uc003sui.2_Missense_Mutation_p.R663Q|HDAC9_uc003suj.2_Missense_Mutation_p.R619Q|HDAC9_uc003sua.1_Missense_Mutation_p.R638Q|HDAC9_uc010kue.1_Missense_Mutation_p.R315Q	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	660	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CATGCTGGACGAATACAGAGT	0.433													10	22					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20785030	20785030	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:20785030A>T	uc003suw.3	+	17	2609	c.2063A>T	c.(2062-2064)AAT>ATT	p.N688I	ABCB5_uc010kuh.2_Missense_Mutation_p.N1133I	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	688	Cytoplasmic (Potential).|ABC transporter 2.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						AATGCAGCAAATATCCATTCT	0.438													14	26					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21698497	21698497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:21698497G>A	uc003svc.2	+	30	5222	c.5191G>A	c.(5191-5193)GAG>AAG	p.E1731K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1731	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGTGGCCTACGAGGAAAAACC	0.448									Kartagener_syndrome				4	13					0	0	1	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22202128	22202128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:22202128C>T	uc003svg.2	-	13	1169	c.856G>A	c.(856-858)GAA>AAA	p.E286K	RAPGEF5_uc011jyl.1_5'UTR	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	136	N-terminal Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TCTGAGTTTTCCTCTTTGCCT	0.348													11	36					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23871875	23871875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:23871875G>A	uc003sws.3	+	24	3017	c.2950G>A	c.(2950-2952)GAA>AAA	p.E984K	STK31_uc003swt.3_Missense_Mutation_p.E961K|STK31_uc011jze.1_Missense_Mutation_p.E961K|STK31_uc010kuq.2_Missense_Mutation_p.E961K|STK31_uc003swv.1_Missense_Mutation_p.E150K	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	984	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TCCAAACCCAGAAAAAGATAC	0.358													18	58					0	0	1	0	0
NOD1	10392	broad.mit.edu	37	7	30492118	30492118	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:30492118C>T	uc003tav.2	-	6	1438	c.915G>A	c.(913-915)TGG>TGA	p.W305*	NOD1_uc010kvs.2_3'UTR	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	305	NACHT.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						GGGCAGGCTCCCAGGGGCAGG	0.667													11	22					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31146151	31146151	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:31146151G>A	uc003tca.1	+	16	1483	c.1260G>A	c.(1258-1260)GTG>GTA	p.V420V	ADCYAP1R1_uc003tcb.1_Silent_p.V399V|ADCYAP1R1_uc003tcc.1_Silent_p.V448V|ADCYAP1R1_uc003tcd.1_Silent_p.V448V|ADCYAP1R1_uc003tce.1_Silent_p.V447V|uc003tcg.2_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	420	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						GCTGGAAGGTGAACCGTTACT	0.592													15	25					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34118718	34118718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:34118718C>T	uc011kap.1	+	12	1442	c.1328C>T	c.(1327-1329)TCG>TTG	p.S443L		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	443	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						TGGAACGGCTCGCGCATCGCG	0.667													17	46					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34818119	34818119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:34818119G>A	uc003teg.1	+	3	454	c.326G>A	c.(325-327)CGA>CAA	p.R109Q	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.R109Q|NPSR1_uc010kwt.1_Intron|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Missense_Mutation_p.R109Q|NPSR1_uc010kww.1_Missense_Mutation_p.R98Q|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	109	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	ATTAATTGGCGATTCACTGGA	0.403													11	40					0	0	1	0	0
AOAH	313	broad.mit.edu	37	7	36633946	36633946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:36633946C>T	uc003tfh.3	-	12	1338	c.937G>A	c.(937-939)GGA>AGA	p.G313R	AOAH_uc010kxf.2_Missense_Mutation_p.G313R|AOAH_uc011kba.1_Missense_Mutation_p.G281R	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	313					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GACACTTACCCAACAGTGGAG	0.443													20	54					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43484424	43484424	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:43484424G>A	uc003tid.1	+	11	2258	c.1653G>A	c.(1651-1653)GGG>GGA	p.G551G	HECW1_uc011kbi.1_Silent_p.G551G	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	551					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CAGCCTGCGGGGACCCCGAGA	0.692													22	51					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43519254	43519254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:43519254C>T	uc003tid.1	+	17	3750	c.3145C>T	c.(3145-3147)CCC>TCC	p.P1049S	HECW1_uc011kbi.1_Missense_Mutation_p.P1015S	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1049	WW 2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TTTCATTGACCCCCGAATCCC	0.517													26	79					0	0	1	0	0
SPDYE1	285955	broad.mit.edu	37	7	44046923	44046923	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:44046923A>G	uc003tjf.2	+	5	825	c.689A>G	c.(688-690)CAC>CGC	p.H230R	POLR2J4_uc003tjc.2_Intron|POLR2J4_uc003tjd.2_Intron|POLR2J4_uc010kxw.2_Intron|POLR2J4_uc003tje.3_Intron|uc003tjg.1_RNA	NM_175064	NP_778234	Q8NFV5	SPDE1_HUMAN	Williams Beuren syndrome chromosome region 19	230										ovary(1)	1						AACATCTTCCACTTCCTGTAT	0.557													83	162					0	0	1	0	0
CAMK2B	816	broad.mit.edu	37	7	44283055	44283055	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:44283055G>A	uc003tkq.2	-	7	696	c.486C>T	c.(484-486)ATC>ATT	p.I162I	CAMK2B_uc003tkp.2_Silent_p.I162I|CAMK2B_uc003tkx.2_Silent_p.I162I|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Silent_p.I162I|CAMK2B_uc003tks.2_Silent_p.I162I|CAMK2B_uc003tku.2_Silent_p.I162I|CAMK2B_uc003tkv.2_Silent_p.I162I|CAMK2B_uc003tkt.2_Silent_p.I162I|CAMK2B_uc003tkw.2_Silent_p.I162I|CAMK2B_uc010kyc.2_Silent_p.I162I	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	162	Protein kinase.				interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						CCTGCACCTCGATAGCTAGGC	0.637													26	71					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44561318	44561318	+	Silent	SNP	C	T	T	rs143499989	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:44561318C>T	uc003tlb.2	-	12	3002	c.2946G>A	c.(2944-2946)TCG>TCA	p.S982S	NPC1L1_uc003tlc.2_Silent_p.S982S|NPC1L1_uc011kbw.1_Silent_p.S936S|NPC1L1_uc003tla.2_5'Flank	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	982	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	CACTGACGGTCGAGGGGCAGA	0.587													17	57					0	0	1	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44801181	44801181	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:44801181C>T	uc003tlr.2	+	10	1497	c.1374C>T	c.(1372-1374)ACC>ACT	p.T458T	ZMIZ2_uc003tlq.2_Silent_p.T400T|ZMIZ2_uc003tls.2_Silent_p.T432T|ZMIZ2_uc003tlt.2_Silent_p.T81T|ZMIZ2_uc010kyj.2_5'UTR	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	458	Interaction with AR.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						TCTACAAGACCCTGATAATGA	0.617													22	79					0	0	1	0	0
MYO1G	64005	broad.mit.edu	37	7	45006396	45006396	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:45006396C>T	uc003tmh.2	-	15	1968	c.1824G>A	c.(1822-1824)AAG>AAA	p.K608K	MYO1G_uc003tmf.2_Silent_p.K51K|MYO1G_uc003tmg.2_Silent_p.K370K|MYO1G_uc010kym.2_Silent_p.K493K|MYO1G_uc003tmi.1_Silent_p.K520K	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	608	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						TCCCAGCTACCTTGTCCTCAT	0.637													50	124					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103886	53103886	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:53103886C>T	uc003tpz.2	+	1	538	c.522C>T	c.(520-522)ACC>ACT	p.T174T		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	174											0						ACCCCTGCACCCGGGAGACTC	0.582													11	27					0	0	1	0	0
VSTM2A	222008	broad.mit.edu	37	7	54612452	54612452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:54612452G>A	uc010kzf.2	+	2	622	c.217G>A	c.(217-219)GAT>AAT	p.D73N	VSTM2A_uc010kze.2_Missense_Mutation_p.D73N|VSTM2A_uc003tqc.3_Missense_Mutation_p.D73N	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	73	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			GGAGGACCTGGATCCCGGGGC	0.731													7	19					0	0	1	0	0
ZNF479	90827	broad.mit.edu	37	7	57188158	57188158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:57188158C>T	uc010kzo.2	-	5	1235	c.964G>A	c.(964-966)GAG>AAG	p.E322K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			CAGGGTTTCTCTCCAGTATGA	0.448													11	22					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57529035	57529035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:57529035C>T	uc011kdi.1	+	4	980	c.868C>T	c.(868-870)CAT>TAT	p.H290Y		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						CAAGAGAATTCATACTGGAGA	0.408													5	16					0	0	1	0	0
ZNF679	168417	broad.mit.edu	37	7	63720662	63720662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:63720662C>T	uc003tsx.2	+	3	372	c.103C>T	c.(103-105)CAC>TAC	p.H35Y		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	35	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATGCCTGGATCACGCTCAGCA	0.383													32	72					0	0	1	0	0
ZNF679	168417	broad.mit.edu	37	7	63727078	63727078	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:63727078A>T	uc003tsx.2	+	5	1336	c.1067A>T	c.(1066-1068)GAA>GTA	p.E356V		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	356	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AAATGTAAAGAATGTGGGAAA	0.393													5	18					0	0	1	0	0
AUTS2	26053	broad.mit.edu	37	7	70255637	70255637	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:70255637G>A	uc003tvw.3	+	19	4178	c.3435G>A	c.(3433-3435)CGG>CGA	p.R1145R	AUTS2_uc003tvx.3_Silent_p.R1121R|AUTS2_uc011keg.1_Silent_p.R597R	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	1145	His-rich.									ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		AGCACGAGCGGGGAGGCCACC	0.602													10	12					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	70800608	70800608	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:70800608C>A	uc003tvy.2	+	2	311	c.311C>A	c.(310-312)TCC>TAC	p.S104Y	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	104	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GCTACTCTTTCCCCGGCTGAA	0.463													19	39					8.28177e-16	8.45935e-16	1	1	0
CALN1	83698	broad.mit.edu	37	7	71488686	71488686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:71488686G>A	uc003twa.3	-	4	858	c.331C>T	c.(331-333)CGC>TGC	p.R111C	CALN1_uc003twb.3_Missense_Mutation_p.R153C|CALN1_uc003twc.3_Missense_Mutation_p.R111C	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	111	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				AAACCATCGCGACCTTCTGAA	0.418													27	77					0	0	1	0	0
CLIP2	7461	broad.mit.edu	37	7	73815895	73815895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:73815895G>A	uc003uam.2	+	16	3454	c.3127G>A	c.(3127-3129)GAG>AAG	p.E1043K	CLIP2_uc003uan.2_Missense_Mutation_p.E1008K	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	1043						microtubule associated complex				skin(3)	3						TCAGAAACAAGAGGTGAGGGG	0.557											OREG0018117	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	17					0	0	1	0	0
SPDYE5	442590	broad.mit.edu	37	7	75124567	75124567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:75124567G>A	uc011kfy.1	+	1	269	c.133G>A	c.(133-135)GAG>AAG	p.E45K		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	45											0						GCCGGAGAAGGAGCTCGCCCC	0.592													17	20					0	0	1	0	0
PTPN12	5782	broad.mit.edu	37	7	77256824	77256824	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:77256824G>T	uc003ugh.2	+	13	1919	c.1828G>T	c.(1828-1830)GAA>TAA	p.E610*	PTPN12_uc011kgp.1_Nonsense_Mutation_p.E491*|PTPN12_uc011kgq.1_Nonsense_Mutation_p.E480*|PTPN12_uc010lds.2_Nonsense_Mutation_p.E342*	NM_002835	NP_002826	Q05209	PTN12_HUMAN	protein tyrosine phosphatase, non-receptor type	610						soluble fraction	non-membrane spanning protein tyrosine phosphatase activity|SH3 domain binding			ovary(1)|breast(1)|pancreas(1)	3						AGACTCAGATGAAAGAAACTC	0.413													20	69					2.39187e-15	2.44078e-15	1	1	0
PCLO	27445	broad.mit.edu	37	7	82531969	82531969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:82531969G>A	uc003uhx.2	-	9	13815	c.13526C>T	c.(13525-13527)TCA>TTA	p.S4509L	PCLO_uc003uhv.2_Missense_Mutation_p.S4509L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4440	PDZ.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGCTTTACCTGAAACTGTGTG	0.219													9	15					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544827	82544827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:82544827G>A	uc003uhx.2	-	7	12764	c.12475C>T	c.(12475-12477)CCA>TCA	p.P4159S	PCLO_uc003uhv.2_Missense_Mutation_p.P4159S|PCLO_uc010lec.2_Missense_Mutation_p.P1124S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4090					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCAGATTTTGGAAAATGTCTG	0.388													33	75					0	0	1	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997226	82997226	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:82997226G>A	uc003uhy.1	-	17	2470	c.2004C>T	c.(2002-2004)ATC>ATT	p.I668I		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	668	Ig-like C2-type.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				CCTCCAAGGTGATTTTACGGA	0.468													31	57					0	0	1	0	0
SEMA3A	10371	broad.mit.edu	37	7	83758442	83758442	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:83758442G>A	uc003uhz.2	-	3	645	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	110	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						TGCTTACCAGGATGTCTTTTC	0.234													10	30					0	0	1	0	0
STEAP4	79689	broad.mit.edu	37	7	87908728	87908728	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:87908728C>T	uc003ujs.2	-	5	1470	c.1365G>A	c.(1363-1365)AGG>AGA	p.R455R	STEAP4_uc010lek.2_Silent_p.R279R	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	455					fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					GTTTTGAGTTCCTTTCCCAGC	0.378													22	57					0	0	1	0	0
ZNF804B	219578	broad.mit.edu	37	7	88962805	88962805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:88962805G>A	uc011khi.1	+	4	1047	c.509G>A	c.(508-510)GGA>GAA	p.G170E		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	170						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CTCCTTAAAGGAAAAAATCTC	0.443										HNSCC(36;0.09)			16	33					0	0	1	0	0
ZNF804B	219578	broad.mit.edu	37	7	88963946	88963946	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:88963946G>A	uc011khi.1	+	4	2188	c.1650G>A	c.(1648-1650)AGG>AGA	p.R550R		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	550						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			AATTCCAGAGGAAATATAATT	0.348										HNSCC(36;0.09)			15	32					0	0	1	0	0
ZNF804B	219578	broad.mit.edu	37	7	88964647	88964647	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:88964647A>G	uc011khi.1	+	4	2889	c.2351A>G	c.(2350-2352)AAC>AGC	p.N784S		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	784						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			AAAGAGAGGAACTGCAAATTG	0.363										HNSCC(36;0.09)			8	16					0	0	1	0	0
ANKIB1	54467	broad.mit.edu	37	7	91972374	91972374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:91972374C>T	uc003ulw.2	+	6	1200	c.824C>T	c.(823-825)TCC>TTC	p.S275F		NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	275							protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GCTTGGATGTCCAACCCGGAG	0.433													32	58					0	0	1	0	0
SLC25A13	10165	broad.mit.edu	37	7	95799394	95799394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:95799394G>A	uc003uof.3	-	13	1465	c.1274C>T	c.(1273-1275)TCG>TTG	p.S425L	SLC25A13_uc003uog.3_Missense_Mutation_p.S426L|SLC25A13_uc011kik.1_Missense_Mutation_p.S317L	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	425					ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	AAGTGGGACCGAACCATCTTT	0.353													23	81					0	0	1	0	0
AZGP1	563	broad.mit.edu	37	7	99569411	99569411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:99569411C>T	uc003ush.2	-	2	339	c.295G>A	c.(295-297)GAG>AAG	p.E99K		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	99					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					TTCAGGGTCTCCATAAAGATG	0.537													35	71					0	0	1	0	0
GIGYF1	64599	broad.mit.edu	37	7	100283077	100283077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:100283077G>A	uc003uwg.1	-	10	2091	c.1082C>T	c.(1081-1083)CCT>CTT	p.P361L		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	361										large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CTCCTCCTGAGGAGGCAGTGG	0.622													9	34					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100361455	100361455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:100361455C>T	uc003uwj.2	+	21	4178	c.4013C>T	c.(4012-4014)TCC>TTC	p.S1338F	ZAN_uc003uwk.2_Missense_Mutation_p.S1338F|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Intron	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1338	VWFD 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GTGGTGAATTCCCCGTCTTGT	0.557													35	100					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100685898	100685898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:100685898C>T	uc003uxp.1	+	3	11254	c.11201C>T	c.(11200-11202)TCT>TTT	p.S3734F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3734	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCCATTTCATCTTCTGCAACT	0.507													71	152					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103207118	103207118	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:103207118G>A	uc003vca.2	-	32	4837	c.4677C>T	c.(4675-4677)ATC>ATT	p.I1559I	RELN_uc010liz.2_Silent_p.I1559I	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1559					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CAATGGAAATGATCTGTGGTT	0.473													13	41					0	0	1	0	0
PNPLA8	50640	broad.mit.edu	37	7	108143005	108143006	+	Silent	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:108143005_108143006GG>AA	uc003vff.1	-	6	1694_1695	c.1287_1288CC>TT	c.(1285-1290)GCCCTA>GCTTTA	p.429_430AL>AL	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Silent_p.429_430AL>AL|PNPLA8_uc003vfi.1_Silent_p.329_330AL>AL|PNPLA8_uc003vfj.1_Silent_p.429_430AL>AL|PNPLA8_uc003vfk.1_Silent_p.329_330AL>AL	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	429_430					fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						TAGCCAATTAGGGCCAAAATTT	0.361													20	48					0	0	1	0	0
TMEM168	64418	broad.mit.edu	37	7	112423807	112423807	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:112423807C>T	uc003vgn.2	-	2	1466	c.1074G>A	c.(1072-1074)CAG>CAA	p.Q358Q	TMEM168_uc010lju.2_Silent_p.Q358Q|TMEM168_uc011kmr.1_Intron	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	358	Helical; (Potential).					integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						AGAACACCAACTGCTCTGAAA	0.408													42	152					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519565	113519565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:113519565C>T	uc010ljy.1	-	4	1613	c.1582G>A	c.(1582-1584)GAA>AAA	p.E528K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	528					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CTTTGTTTTTCATTAACACCT	0.348													15	34					0	0	1	0	0
TFEC	22797	broad.mit.edu	37	7	115580778	115580778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:115580778C>T	uc003vhj.1	-	8	1055	c.871G>A	c.(871-873)GAT>AAT	p.D291N	TFEC_uc003vhk.1_Missense_Mutation_p.D262N|TFEC_uc003vhl.3_3'UTR|TFEC_uc011kmw.1_3'UTR	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	291	Necessary for transcriptional transactivation.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			AATGATAAATCTGTGAAGTAT	0.433													30	110					0	0	1	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117431241	117431241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:117431241G>A	uc003vjf.2	-	4	2101	c.2009C>T	c.(2008-2010)CCC>CTC	p.P670L		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	670										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		GGCACTAACGGGGTTTATGGA	0.498													29	102					0	0	1	0	0
ANKRD7	56311	broad.mit.edu	37	7	117876961	117876961	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:117876961T>C	uc003vji.2	+	5	866	c.693T>C	c.(691-693)TTT>TTC	p.F231F		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	231					male gonad development						0						GGAATATGTTTATTTCCATGG	0.398													55	165					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	120385919	120385919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:120385919C>T	uc003vjj.1	+	5	2518	c.1553C>T	c.(1552-1554)TCA>TTA	p.S518L		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	518	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CACAGTCCTTCACTGTCTTCA	0.448													35	81					0	0	1	0	0
FEZF1	389549	broad.mit.edu	37	7	121944265	121944265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:121944265G>A	uc003vkd.2	-	1	301	c.227C>T	c.(226-228)CCC>CTC	p.P76L	FEZF1_uc003vkc.2_Missense_Mutation_p.P76L|uc010lko.1_RNA|uc003vkf.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	76					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						AGGCACGAAGGGGATCATGCA	0.572													13	53					0	0	1	0	0
RNF133	168433	broad.mit.edu	37	7	122338180	122338180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:122338180G>A	uc003vkj.1	-	1	1029	c.793C>T	c.(793-795)CCT>TCT	p.P265S	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	265	RING-type; atypical.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						ATGTCATTAGGCTTATAGCGT	0.403													32	108					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123593837	123593837	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:123593837C>T	uc003vld.2	+	4	615	c.213C>T	c.(211-213)AGC>AGT	p.S71S	SPAM1_uc003vle.2_Silent_p.S71S|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Silent_p.S71S|SPAM1_uc010lku.2_Silent_p.S71S	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	71					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TAGATATGAGCCTCTTCTCTT	0.433													10	37					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173159	126173159	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:126173159C>T	uc003vlr.2	-	8	2588	c.2277G>A	c.(2275-2277)TTG>TTA	p.L759L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.L759L|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	759	Helical; Name=5; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AAGTGACCATCAAGAGGATAC	0.448										HNSCC(24;0.065)			11	42					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173578	126173578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:126173578C>T	uc003vlr.2	-	8	2169	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.E620K|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	620	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TAACTAAGTTCGCGTCCTGAA	0.458										HNSCC(24;0.065)			15	40					0	0	1	0	0
LEP	3952	broad.mit.edu	37	7	127894587	127894587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:127894587G>A	uc003vml.2	+	3	332	c.275G>A	c.(274-276)AGA>AAA	p.R92K	LEP_uc003vmm.2_Missense_Mutation_p.R91K	NM_000230	NP_000221	P41159	LEP_HUMAN	leptin precursor	92					adult feeding behavior|energy reserve metabolic process|negative regulation of appetite|placenta development|positive regulation of developmental growth	extracellular space					0						ATGCCTTCCAGAAACGTGATC	0.547													34	108					0	0	1	0	0
IRF5	3663	broad.mit.edu	37	7	128588335	128588335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:128588335G>A	uc003vog.2	+	9	1343	c.1222G>A	c.(1222-1224)GAA>AAA	p.E408K	IRF5_uc003voh.2_Missense_Mutation_p.E392K|IRF5_uc010llt.2_Missense_Mutation_p.E316K|IRF5_uc003voi.2_Missense_Mutation_p.E392K|IRF5_uc003voj.3_Missense_Mutation_p.E392K	NM_002200	NP_002191	Q13568	IRF5_HUMAN	interferon regulatory factor 5 isoform a	402					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTTTGGGGAAGAATGGCCTGA	0.517													35	112					0	0	1	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138732568	138732568	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:138732568G>A	uc003vun.2	-	13	2869	c.2481C>T	c.(2479-2481)TCC>TCT	p.S827S		NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	827	PARP catalytic.				response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						AATTTTTGTGGGAATAGATGG	0.338													11	61					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139706935	139706935	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:139706935G>A	uc011kqv.1	+	11	1484	c.1320G>A	c.(1318-1320)CTG>CTA	p.L440L	TBXAS1_uc003vvh.2_Silent_p.L394L|TBXAS1_uc010lne.2_Silent_p.L326L|TBXAS1_uc011kqu.1_Silent_p.L345L|TBXAS1_uc003vvi.2_Silent_p.L394L|TBXAS1_uc003vvj.2_Silent_p.L394L|TBXAS1_uc011kqw.1_Silent_p.L374L	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	393	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					TGCCCTATCTGGACATGGTGA	0.602													45	150					0	0	1	0	0
PRSS37	136242	broad.mit.edu	37	7	141540847	141540847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:141540847C>T	uc003vws.1	-	1	375	c.3G>A	c.(1-3)ATG>ATA	p.M1I	PRSS37_uc011krk.1_5'UTR|PRSS37_uc011krl.1_Missense_Mutation_p.M1I|PRSS37_uc003vwt.1_5'UTR	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	1					proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						AGACATATTTCATGGTGATCC	0.483													19	87					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141708362	141708362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:141708362C>T	uc003vwy.2	+	3	238	c.184C>T	c.(184-186)CCT>TCT	p.P62S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	62	Ser/Thr-rich.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TACCCCAGATCCTGGAACAAC	0.478													10	31					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141750058	141750058	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:141750058C>A	uc003vwy.2	+	23	2665	c.2611C>A	c.(2611-2613)CTT>ATT	p.L871I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	871	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TAAAGTGTATCTTTTATGTGA	0.413													47	176					8.04919e-23	8.23784e-23	1	1	0
MGAM	8972	broad.mit.edu	37	7	141794601	141794601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:141794601C>T	uc003vwy.2	+	40	4762	c.4708C>T	c.(4708-4710)CGC>TGC	p.R1570C		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1570	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GATGTGTGTTCGCTGGATGCA	0.483													13	62					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141803141	141803141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:141803141G>A	uc003vwy.2	+	47	5452	c.5398G>A	c.(5398-5400)GAA>AAA	p.E1800K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1800	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GGGCTACATTGAAATCTGGGG	0.428													5	12					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142459658	142459658	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:142459658C>T	uc003wak.2	+	3	251	c.234C>T	c.(232-234)ATC>ATT	p.I78I	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Silent_p.I18I	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	78	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			AGCACAACATCGAAGTCCTGG	0.547									Hereditary_Pancreatitis				5	253					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142459673	142459673	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:142459673G>A	uc003wak.2	+	3	266	c.249G>A	c.(247-249)GGG>GGA	p.G83G	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Silent_p.G23G	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	83	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TCCTGGAGGGGAATGAGCAGT	0.547									Hereditary_Pancreatitis				45	233					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142565436	142565436	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:142565436C>T	uc011kst.1	+	12	2608	c.1821C>T	c.(1819-1821)CTC>CTT	p.L607L	EPHB6_uc011ksu.1_Silent_p.L607L|EPHB6_uc003wbs.2_Silent_p.L315L|EPHB6_uc003wbt.2_Silent_p.L81L|EPHB6_uc003wbu.2_Silent_p.L315L|EPHB6_uc003wbv.2_5'UTR	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	607	Helical; (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					TGGCCTTCCTCCTGCTGGCAG	0.632													14	36					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142654920	142654920	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:142654920G>A	uc003wcb.2	-	6	876	c.666C>T	c.(664-666)GTC>GTT	p.V222V		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	222	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TCACCTGGATGACTGGTGTGT	0.527													25	87					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142655516	142655516	+	Splice_Site	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:142655516C>T	uc003wcb.2	-	5	611	c.401_splice	c.e5-1	p.E134_splice		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase						proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TTCTGGACCTCTAGAAAGGAA	0.323													12	70					0	0	1	0	0
OR9A2	135924	broad.mit.edu	37	7	142723915	142723915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:142723915G>A	uc003wcc.1	-	1	305	c.305C>T	c.(304-306)TCC>TTC	p.S102F		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	102					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					GGTCCCACAGGAAAAGTTGAG	0.463													24	44					0	0	1	0	0
OR6V1	346517	broad.mit.edu	37	7	142749510	142749510	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:142749510C>T	uc011ksv.1	+	1	73	c.73C>T	c.(73-75)CTG>TTG	p.L25L		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	25	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					GCAGGCCCTTCTGTATGGCCC	0.512													71	196					0	0	1	0	0
OR6V1	346517	broad.mit.edu	37	7	142750181	142750181	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:142750181C>T	uc011ksv.1	+	1	744	c.744C>T	c.(742-744)ATC>ATT	p.I248I		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TGGTCTTCATCGGCTACAGTA	0.552													41	116					0	0	1	0	0
OR2F2	135948	broad.mit.edu	37	7	143633090	143633090	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:143633090G>A	uc011ktv.1	+	1	765	c.765G>A	c.(763-765)ACG>ACA	p.T255T		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					ACGGCACAACGATTTTCACTT	0.512													25	81					0	0	1	0	0
OR2F2	135948	broad.mit.edu	37	7	143633243	143633243	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:143633243G>A	uc011ktv.1	+	1	918	c.918G>A	c.(916-918)GAG>GAA	p.E306E		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					AACTATTAGAGAAATTCTCTG	0.418													17	38					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143748028	143748028	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:143748028C>T	uc011ktw.1	+	1	534	c.534C>T	c.(532-534)TTC>TTT	p.F178F		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					ACCACTTCTTCTGTGAAATCC	0.552													66	244					0	0	1	0	0
CUL1	8454	broad.mit.edu	37	7	148427274	148427274	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:148427274C>T	uc010lpg.2	+	2	586	c.60C>T	c.(58-60)ATC>ATT	p.I20I	CUL1_uc003wey.2_Silent_p.I20I|CUL1_uc003wez.2_5'UTR	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	20					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			TGGACCAGATCTGGGACGACC	0.567													30	117					0	0	1	0	0
ZNF398	57541	broad.mit.edu	37	7	148876498	148876498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:148876498C>T	uc003wfl.2	+	6	1809	c.1534C>T	c.(1534-1536)CCC>TCC	p.P512S	ZNF398_uc011kul.1_Missense_Mutation_p.P341S|ZNF398_uc011kum.1_Missense_Mutation_p.P517S	NM_170686	NP_733787	Q8TD17	ZN398_HUMAN	zinc finger 398 isoform a	512	C2H2-type 7.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00143)			GCGTCCTTACCCCTGCACTGA	0.612													35	34					0	0	1	0	0
ZNF775	285971	broad.mit.edu	37	7	150093942	150093942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:150093942C>T	uc003whf.1	+	3	498	c.373C>T	c.(373-375)CAC>TAC	p.H125Y		NM_173680	NP_775951	Q96BV0	ZN775_HUMAN	zinc finger protein 775	125	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.0173)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTGAAGATCCACCAGCGCAC	0.662													11	17					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174302	150174302	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:150174302C>T	uc003whj.2	+	5	1762	c.1432C>T	c.(1432-1434)CAG>TAG	p.Q478*		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	478						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CAAGACCAGCCAGAGTGGCAG	0.612													15	58					0	0	1	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217583	150217583	+	Missense_Mutation	SNP	G	A	A	rs80028286	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:150217583G>A	uc003whk.2	+	2	651	c.521G>A	c.(520-522)AGT>AAT	p.S174N		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	174							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGAAAACCAGTAAGGCAGAG	0.483													11	56					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325428	150325428	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:150325428C>T	uc003whn.2	-	3	682	c.258G>A	c.(256-258)TGG>TGA	p.W86*	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	86							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTTCCCAGCCCACTCTCGGC	0.582													43	188					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150416147	150416147	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:150416147G>A	uc003whq.2	+	2	99	c.12G>A	c.(10-12)AGG>AGA	p.R4R	GIMAP1_uc003whp.2_Silent_p.R12R	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	4	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGGAGGAAGGAAGATGGCGA	0.388													16	49					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417327	150417327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:150417327G>A	uc003whq.2	+	3	322	c.235G>A	c.(235-237)GAA>AAA	p.E79K	GIMAP1_uc003whp.2_Missense_Mutation_p.E87K	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	79	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTGCCACGTGGAAGTCGTGGA	0.637													23	72					0	0	1	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439501	150439501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:150439501G>A	uc003whr.1	+	3	626	c.274G>A	c.(274-276)GAT>AAT	p.D92N	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	92	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTCACAGGCCGATACCCAAGA	0.597													21	89					0	0	1	0	0
SLC4A2	6522	broad.mit.edu	37	7	150771818	150771818	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:150771818C>T	uc003wit.3	+	19	3193	c.2937C>T	c.(2935-2937)GTC>GTT	p.V979V	SLC4A2_uc011kve.1_Silent_p.V970V|SLC4A2_uc003wiu.3_Silent_p.V965V|SLC4A2_uc003wiv.3_Silent_p.V173V	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	979	Membrane (anion exchange).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGGGCTGGGTCATCAACCCCC	0.567													37	117					0	0	1	0	0
NUB1	51667	broad.mit.edu	37	7	151073817	151073817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:151073817G>A	uc003wjx.2	+	14	1666	c.1661G>A	c.(1660-1662)GGA>GAA	p.G554E	NUB1_uc003wjw.2_Missense_Mutation_p.G516E|NUB1_uc010lqc.2_RNA	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	530					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		GCTCACAACGGAGGAAGCCTG	0.607													4	11					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151970830	151970830	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:151970830G>A	uc003wla.2	-	7	1191	c.972C>T	c.(970-972)TTC>TTT	p.F324F		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	324					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GACAAAGCAGGAAGATGTGAC	0.398			N		medulloblastoma								6	185					0	0	1	0	0
HTR5A	3361	broad.mit.edu	37	7	154876044	154876044	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:154876044C>T	uc003wlu.1	+	2	985	c.921C>T	c.(919-921)ATC>ATT	p.I307I		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	307	Extracellular (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CCGAGCTCATCAGTCCCCTCT	0.582													46	149					0	0	1	0	0
SHH	6469	broad.mit.edu	37	7	155599042	155599042	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:155599042G>A	uc003wmk.1	-	2	661	c.510C>T	c.(508-510)TTC>TTT	p.F170F	SHH_uc003wmh.1_RNA|SHH_uc003wmi.1_Silent_p.F83F|SHH_uc003wmj.1_Silent_p.F83F	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	170			F -> C (in HPE3).		androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACACCCAGTCGAAGCCGGCCT	0.647													18	82					0	0	1	0	0
VIPR2	7434	broad.mit.edu	37	7	158896545	158896545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:158896545C>T	uc003woh.2	-	4	446	c.260G>A	c.(259-261)GGA>GAA	p.G87E	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	87	Extracellular (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		GCTTATGTTTCCTGGAAAGTG	0.478													18	57					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2077143	2077143	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:2077143C>T	uc003wpx.3	+	32	3861	c.3723C>T	c.(3721-3723)CTC>CTT	p.L1241L	MYOM2_uc011kwi.1_Silent_p.L666L	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1241					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TGAAGGTACTCTGCACCCCAG	0.453													10	29					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3063043	3063043	+	Missense_Mutation	SNP	G	A	A	rs116801637	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:3063043G>A	uc011kwk.1	-	31	5360	c.4970C>T	c.(4969-4971)ACG>ATG	p.T1657M	CSMD1_uc011kwj.1_Missense_Mutation_p.T1049M|CSMD1_uc003wqe.2_Missense_Mutation_p.T813M	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1657	Extracellular (Potential).|CUB 10.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTTTGGTACCGTGATGGAATA	0.398													4	11					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3443759	3443759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:3443759G>A	uc011kwk.1	-	9	1514	c.1124C>T	c.(1123-1125)TCA>TTA	p.S375L		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	375	Extracellular (Potential).|Sushi 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTCCTCACATGAAAACTGTAC	0.408													7	15					0	0	1	0	0
XKR5	389610	broad.mit.edu	37	8	6673346	6673346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:6673346G>A	uc003wqp.2	-	6	924	c.902C>T	c.(901-903)CCT>CTT	p.P301L	XKR5_uc003wqq.2_Missense_Mutation_p.P138L|XKR5_uc003wqr.1_RNA	NM_207411	NP_997294	Q6UX68	XKR5_HUMAN	XK-related protein 5a	Error:Variant_position_missing_in_Q6UX68_after_alignment						integral to membrane					0			STAD - Stomach adenocarcinoma(24;0.0984)	READ - Rectum adenocarcinoma(644;0.137)|COAD - Colon adenocarcinoma(149;0.166)		AATCCAGACAGGACCCCAGCT	0.507											OREG0018511	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	12					0	0	1	0	0
ATP6V1B2	526	broad.mit.edu	37	8	20072457	20072457	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:20072457T>C	uc003wzp.2	+	10	1270	c.1056T>C	c.(1054-1056)CCT>CCC	p.P352P		NM_001693	NP_001684	P21281	VATB2_HUMAN	vacuolar H+ATPase B2	352					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|endomembrane system|Golgi apparatus|melanosome|plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0				Colorectal(74;0.0535)|COAD - Colon adenocarcinoma(73;0.211)		CTCAAATCCCTATTCTAACCA	0.413													26	49					0	0	1	0	0
DOK2	9046	broad.mit.edu	37	8	21767052	21767052	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:21767052G>A	uc003wzy.1	-	5	1102	c.1009C>T	c.(1009-1011)CTG>TTG	p.L337L	DOK2_uc003wzx.1_Silent_p.L337L|DOK2_uc003wzz.1_Silent_p.L183L|DOK2_uc010lth.1_Silent_p.L183L	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	337	Pro-rich.				blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		CGAGGGGGCAGGGTCTCCTCA	0.642													24	54					0	0	1	0	0
BMP1	649	broad.mit.edu	37	8	22037291	22037291	+	Missense_Mutation	SNP	C	T	T	rs73670368	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:22037291C>T	uc003xbg.2	+	7	1154	c.910C>T	c.(910-912)CGG>TGG	p.R304W	BMP1_uc003xba.2_Missense_Mutation_p.R304W|BMP1_uc003xbb.2_Missense_Mutation_p.R304W|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_Missense_Mutation_p.R53W|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_Missense_Mutation_p.R53W|BMP1_uc011kzc.1_Missense_Mutation_p.R53W|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	304	Metalloprotease.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		CCAAAGGACACGGCTCAGCAA	0.582													11	39					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24249837	24249837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:24249837C>T	uc003xdz.2	+	2	371	c.151C>T	c.(151-153)CAC>TAC	p.H51Y	ADAMDEC1_uc010lub.2_5'UTR|ADAMDEC1_uc011lab.1_Intron	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	51					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TAAAAAACTTCACATTTTACA	0.343													10	27					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256963	24256963	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:24256963C>T	uc003xdz.2	+	10	1207	c.987C>T	c.(985-987)TCC>TCT	p.S329S	ADAMDEC1_uc010lub.2_Silent_p.S250S|ADAMDEC1_uc011lab.1_Silent_p.S250S	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	329	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		CCTTGTGTTCCCCATCTTCGG	0.333													16	54					0	0	1	0	0
NEFM	4741	broad.mit.edu	37	8	24775118	24775118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:24775118G>A	uc003xed.3	+	3	1783	c.1750G>A	c.(1750-1752)GAG>AAG	p.E584K	NEFM_uc011lac.1_Missense_Mutation_p.E584K|NEFM_uc010lue.2_Missense_Mutation_p.E208K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	584	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		cgaagctaaagaggaaaagaa	0.259													5	12					0	0	1	0	0
PNMA2	10687	broad.mit.edu	37	8	26365726	26365726	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:26365726C>T	uc003xez.2	-	3	1316	c.546G>A	c.(544-546)GAG>GAA	p.E182E		NM_007257	NP_009188	Q9UL42	PNMA2_HUMAN	paraneoplastic antigen MA2	182					apoptosis	nucleolus	protein binding				0		all_cancers(63;0.109)|Ovarian(32;2.61e-05)|all_epithelial(46;0.105)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0196)|Epithelial(17;3.13e-11)|Colorectal(74;0.123)		ccaaccagacctcaaaggact	0													31	73					0	0	1	0	0
ESCO2	157570	broad.mit.edu	37	8	27634208	27634208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:27634208G>A	uc003xgg.2	+	3	466	c.383G>A	c.(382-384)GGA>GAA	p.G128E	ESCO2_uc010luy.1_RNA|ESCO2_uc003xgh.2_Missense_Mutation_p.G128E	NM_001017420	NP_001017420	Q56NI9	ESCO2_HUMAN	establishment of cohesion 1 homolog 2	128					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			central_nervous_system(1)	1		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|KIRC - Kidney renal clear cell carcinoma(542;0.0955)|Kidney(114;0.115)|Colorectal(74;0.132)		AAAATGCAAGGAAAACCAGTC	0.353									SC_Phocomelia_syndrome				12	20					0	0	1	0	0
TMEM66	51669	broad.mit.edu	37	8	29923609	29923609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:29923609G>A	uc003xhs.2	-	5	1073	c.889C>T	c.(889-891)CCC>TCC	p.P297S	TMEM66_uc003xht.2_Missense_Mutation_p.P297S|TMEM66_uc003xhu.2_Missense_Mutation_p.P261S|TMEM66_uc003xhv.2_Missense_Mutation_p.P125S	NM_016127	NP_057211	Q96BY9	TMM66_HUMAN	transmembrane protein 66 precursor	297						integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(542;0.0993)|Kidney(114;0.119)		GGGTAGGAGGGAGGATAGGAC	0.478													18	59					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35425615	35425615	+	Splice_Site	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:35425615G>A	uc003xjr.1	+	3	651	c.323_splice	c.e3-1	p.G108_splice	UNC5D_uc003xjs.1_Splice_Site_p.G103_splice	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor						apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CCCACCATCAGGTTTGAAGGT	0.453													60	154					0	0	1	0	0
ERLIN2	11160	broad.mit.edu	37	8	37601891	37601891	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:37601891C>T	uc003xke.3	+	5	370	c.255C>T	c.(253-255)TAC>TAT	p.Y85Y	ERLIN2_uc003xkc.3_Silent_p.Y85Y|ERLIN2_uc003xkd.2_Silent_p.Y85Y|ERLIN2_uc003xkf.3_Silent_p.Y85Y|ERLIN2_uc003xkg.2_Silent_p.Y85Y	NM_007175	NP_009106	O94905	ERLN2_HUMAN	ER lipid raft associated 2 isoform 1	85	Lumenal (Potential).				ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	protein binding				0		Lung NSC(58;0.174)	BRCA - Breast invasive adenocarcinoma(5;6.14e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			TGATGATCTACTTTGACAGAA	0.507													72	179					0	0	1	0	0
EIF4EBP1	1978	broad.mit.edu	37	8	37914672	37914672	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:37914672G>A	uc003xks.2	+	2	291	c.219G>A	c.(217-219)AGG>AGA	p.R73R		NM_004095	NP_004086	Q13541	4EBP1_HUMAN	eukaryotic translation initiation factor 4E	73					G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|positive regulation of mitotic cell cycle|TOR signaling cascade|translation	cytosol					0	Colorectal(12;0.00627)	Lung NSC(58;0.118)|all_lung(54;0.195)				CACCCCCAAGGGATCTGCCCA	0.572													29	55					0	0	1	0	0
FGFR1	2260	broad.mit.edu	37	8	38282138	38282138	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:38282138G>A	uc003xlp.2	-	7	1767	c.825C>T	c.(823-825)TTC>TTT	p.F275F	FGFR1_uc011lbo.1_Silent_p.F273F|FGFR1_uc011lbp.1_Silent_p.F186F|FGFR1_uc011lbq.1_Silent_p.F184F|FGFR1_uc010lwk.2_Silent_p.F267F|FGFR1_uc011lbr.1_RNA|FGFR1_uc011lbs.1_Silent_p.F115F|FGFR1_uc011lbt.1_Silent_p.F184F|FGFR1_uc011lbu.1_Silent_p.F306F|FGFR1_uc011lbv.1_Silent_p.F273F|FGFR1_uc011lbw.1_Silent_p.F186F|FGFR1_uc011lbx.1_Silent_p.F186F|FGFR1_uc003xlv.2_Silent_p.F186F|FGFR1_uc003xlu.2_Silent_p.F184F	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	275	Ig-like C2-type 3.|Extracellular (Potential).				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	CCTTACACATGAACTCCACGT	0.582		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						40	90					0	0	1	0	0
FGFR1	2260	broad.mit.edu	37	8	38314906	38314906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:38314906G>A	uc003xlp.2	-	2	1001	c.59C>T	c.(58-60)ACC>ATC	p.T20I	FGFR1_uc011lbo.1_Missense_Mutation_p.T20I|FGFR1_uc011lbp.1_Missense_Mutation_p.T20I|FGFR1_uc011lbq.1_Missense_Mutation_p.T20I|FGFR1_uc010lwk.2_5'UTR|FGFR1_uc011lbs.1_5'UTR|FGFR1_uc011lbt.1_Missense_Mutation_p.T20I|FGFR1_uc011lbu.1_Missense_Mutation_p.T53I|FGFR1_uc011lbv.1_Missense_Mutation_p.T20I|FGFR1_uc011lbw.1_Missense_Mutation_p.T20I|FGFR1_uc011lbx.1_Missense_Mutation_p.T20I|FGFR1_uc003xlv.2_Missense_Mutation_p.T20I|FGFR1_uc003xlu.2_Missense_Mutation_p.T20I|FGFR1_uc003xlw.1_RNA	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	20					axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	CGGCCTAGCGGTGCAGAGTGT	0.617		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						12	36					0	0	1	0	0
C8orf4	56892	broad.mit.edu	37	8	40011284	40011284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:40011284C>T	uc003xnq.1	+	1	296	c.233C>T	c.(232-234)ACG>ATG	p.T78M		NM_020130	NP_064515	Q9NR00	CH004_HUMAN	thyroid cancer-1	78					apoptosis					ovary(1)	1	Ovarian(28;0.0173)	all_cancers(7;5.34e-21)|all_epithelial(6;1.04e-14)|Lung NSC(58;9.35e-06)|all_lung(54;1.39e-05)|Hepatocellular(245;0.00745)|Breast(189;0.0334)|Colorectal(162;0.0815)|Myeloproliferative disorder(644;0.116)|Esophageal squamous(32;0.141)	LUSC - Lung squamous cell carcinoma(45;0.000149)	KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		GAGGAGAAAACGCGTGCCCTG	0.433													21	62					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41555635	41555635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:41555635C>T	uc003xok.2	-	24	2647	c.2563G>A	c.(2563-2565)GAA>AAA	p.E855K	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.E171K|ANK1_uc003xoi.2_Missense_Mutation_p.E855K|ANK1_uc003xoj.2_Missense_Mutation_p.E855K|ANK1_uc003xol.2_Missense_Mutation_p.E855K|ANK1_uc003xom.2_Missense_Mutation_p.E896K	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	855					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GCTGGAGATTCCACCCTGCGT	0.567													12	39					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41583332	41583332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:41583332G>A	uc003xok.2	-	6	643	c.559C>T	c.(559-561)CGC>TGC	p.R187C	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.R187C|ANK1_uc003xoj.2_Missense_Mutation_p.R187C|ANK1_uc003xol.2_Missense_Mutation_p.R187C|ANK1_uc003xom.2_Missense_Mutation_p.R220C	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	187	ANK 5.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GCAGCCGTGCGCGTGTCGTCG	0.697													5	19					0	0	1	0	0
SGK196	84197	broad.mit.edu	37	8	42977983	42977983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:42977983G>A	uc003xpw.2	+	5	1275	c.1016G>A	c.(1015-1017)AGA>AAA	p.R339K		NM_032237	NP_115613	Q9H5K3	SG196_HUMAN	protein kinase-like protein SgK196	339	Protein kinase.					integral to membrane	ATP binding|protein kinase activity				0						GATACACTTAGAGATGCCATG	0.478													29	66					0	0	1	0	0
PRKDC	5591	broad.mit.edu	37	8	48801780	48801781	+	Silent	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:48801780_48801781GG>AA	uc003xqi.2	-	34	4131_4132	c.4074_4075CC>TT	c.(4072-4077)CTCCTG>CTTTTG	p.1358_1359LL>LL	PRKDC_uc003xqj.2_Silent_p.1358_1359LL>LL|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1358_1359					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TCCTTCTTCAGGAGCTGTAACA	0.48								NHEJ					7	19					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55539605	55539605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:55539605G>A	uc003xsd.1	+	4	3311	c.3163G>A	c.(3163-3165)GAA>AAA	p.E1055K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1055					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGTTTACCAGGAAATAAACCT	0.378													34	64					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55541696	55541696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:55541696C>T	uc003xsd.1	+	4	5402	c.5254C>T	c.(5254-5256)CAT>TAT	p.H1752Y	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1752					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GAAAGAAAATCATTTGCTAAG	0.413													15	30					0	0	1	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228854	57228854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:57228854G>A	uc003xsy.1	-	2	691	c.53C>T	c.(52-54)TCA>TTA	p.S18L	SDR16C5_uc010lyk.1_Missense_Mutation_p.S18L|SDR16C5_uc010lyl.1_Missense_Mutation_p.S18L	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	18	Helical; (Potential).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ACTAAACAGTGATTTTCCTAA	0.418													8	35					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69002888	69002888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:69002888G>A	uc003xxv.1	+	20	2215	c.2188G>A	c.(2188-2190)GAG>AAG	p.E730K	PREX2_uc003xxu.1_Missense_Mutation_p.E730K|PREX2_uc011lez.1_Missense_Mutation_p.E665K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	730	PDZ 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TGTCAGCAAAGAGACACATGC	0.468													21	46					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69058566	69058566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:69058566C>T	uc003xxv.1	+	34	4237	c.4210C>T	c.(4210-4212)CAT>TAT	p.H1404Y		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1404					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GTTTAAAATTCATCCTGTTCT	0.318													12	35					0	0	1	0	0
C8orf34	116328	broad.mit.edu	37	8	69434140	69434140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:69434140C>T	uc010lyz.2	+	6	663	c.614C>T	c.(613-615)CCT>CTT	p.P205L	C8orf34_uc010lyy.1_Missense_Mutation_p.P205L|C8orf34_uc003xyb.2_Missense_Mutation_p.P180L	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	205					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			ATGCTACAGCCTCCAATTCCA	0.443													19	34					0	0	1	0	0
EYA1	2138	broad.mit.edu	37	8	72267066	72267066	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:72267066G>A	uc003xys.3	-	2	362	c.75C>T	c.(73-75)CTC>CTT	p.L25L	EYA1_uc003xyr.3_Silent_p.L25L|EYA1_uc003xyt.3_Intron|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Silent_p.L25L|EYA1_uc011lfe.1_Silent_p.L25L|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	25					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GAGAGTTACCGAGTTTGGGGC	0.463													35	78					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73848342	73848342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:73848342G>A	uc003xzb.2	+	3	1340	c.752G>A	c.(751-753)CGA>CAA	p.R251Q		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	251	Helical; Name=Segment S2; (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TACCTTTTGCGATTCTTATCC	0.448													16	62					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73849561	73849561	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:73849561G>A	uc003xzb.2	+	3	2559	c.1971G>A	c.(1969-1971)GAG>GAA	p.E657E		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	657	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TATCCAGAGAGAAAGGACCTG	0.567													18	51					0	0	1	0	0
JPH1	56704	broad.mit.edu	37	8	75227656	75227656	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:75227656G>A	uc003yae.2	-	2	619	c.579C>T	c.(577-579)TTC>TTT	p.F193F	JPH1_uc003yaf.2_Silent_p.F193F|JPH1_uc003yag.1_Silent_p.F57F	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	193	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			AGTTGAGCACGAAACCGCCGC	0.677													25	38					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77765725	77765725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:77765725G>A	uc003yav.2	+	10	6820	c.6433G>A	c.(6433-6435)GAT>AAT	p.D2145N	ZFHX4_uc003yau.1_Missense_Mutation_p.D2190N|ZFHX4_uc003yaw.1_Missense_Mutation_p.D2145N	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2145						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GAGAAATAAAGATTCACCATA	0.383										HNSCC(33;0.089)			30	97					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77765833	77765833	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:77765833A>C	uc003yav.2	+	10	6928	c.6541A>C	c.(6541-6543)AAA>CAA	p.K2181Q	ZFHX4_uc003yau.1_Missense_Mutation_p.K2226Q|ZFHX4_uc003yaw.1_Missense_Mutation_p.K2181Q	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2181	Homeobox 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATCATTCAGTAAAAGGTCTTC	0.373										HNSCC(33;0.089)			22	40					0	0	1	0	0
LRRCC1	85444	broad.mit.edu	37	8	86044124	86044124	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:86044124A>G	uc003ycw.2	+	12	2050	c.1896A>G	c.(1894-1896)TTA>TTG	p.L632L	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_Silent_p.L333L|LRRCC1_uc003ycx.2_Silent_p.L539L|LRRCC1_uc003ycy.2_Silent_p.L612L	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	632	Potential.				cell division|mitosis	centriole|nucleus					0						TTGACGTGTTAAGCCAGCAGT	0.363													12	26					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87738864	87738864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:87738864G>A	uc003ydx.2	-	3	279	c.233C>T	c.(232-234)TCC>TTC	p.S78F		NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	78	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ATCTCCAGAGGAATTTTTCTT	0.428													71	172					0	0	1	0	0
SLC26A7	115111	broad.mit.edu	37	8	92378825	92378825	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:92378825G>A	uc003yex.2	+	15	1784	c.1506G>A	c.(1504-1506)GTG>GTA	p.V502V	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Silent_p.V502V|SLC26A7_uc003yfa.2_Silent_p.V502V	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	502	STAS.|Cytoplasmic (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TGCAGCAGGTGAAAATTATCT	0.323													14	34					0	0	1	0	0
CDH17	1015	broad.mit.edu	37	8	95177987	95177987	+	Splice_Site	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:95177987A>G	uc003ygh.2	-	10	1407	c.1282_splice	c.e10+1	p.D428_splice	CDH17_uc011lgo.1_Splice_Site_p.D214_splice|CDH17_uc011lgp.1_Splice_Site_p.D428_splice	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor							integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			TATGATACTAACCTTTGTCAG	0.383													15	28					0	0	1	0	0
GDF6	392255	broad.mit.edu	37	8	97172846	97172846	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:97172846C>T	uc003yhp.2	-	1	175	c.75G>A	c.(73-75)CAG>CAA	p.Q25Q		NM_001001557	NP_001001557	Q6KF10	GDF6_HUMAN	growth differentiation factor 6 precursor	25					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(1)|breast(1)|pancreas(1)	3	Breast(36;2.67e-05)					AGATGGAAGCCTGCTGGAAAC	0.632													36	65					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813439	106813439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:106813439G>A	uc003ymd.2	+	8	1152	c.1129G>A	c.(1129-1131)GAG>AAG	p.E377K	ZFPM2_uc011lhs.1_Missense_Mutation_p.E108K|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	377	C2H2-type 3.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GACTCAGAGGGAGTTATTGCA	0.507													42	113					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814063	106814063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:106814063C>T	uc003ymd.2	+	8	1776	c.1753C>T	c.(1753-1755)CCT>TCT	p.P585S	ZFPM2_uc011lhs.1_Missense_Mutation_p.P316S	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	585					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CCCAGAGTTCCCTAGTGTGTC	0.443													52	118					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108315580	108315580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:108315580C>T	uc003ymn.2	-	5	1292	c.824G>A	c.(823-825)GGA>GAA	p.G275E	ANGPT1_uc011lhv.1_Missense_Mutation_p.G75E|ANGPT1_uc003ymo.2_Missense_Mutation_p.G274E|ANGPT1_uc003ymp.3_Missense_Mutation_p.G74E	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	275					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			CTCTCTTTTTCCTCCCTTTAG	0.313													17	48					0	0	1	0	0
TRHR	7201	broad.mit.edu	37	8	110100160	110100160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:110100160C>T	uc003ymz.3	+	1	435	c.419C>T	c.(418-420)TCC>TTC	p.S140F		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	140	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			TGCACATTTTCCAGAGCCAAA	0.403													19	51					0	0	1	0	0
TRHR	7201	broad.mit.edu	37	8	110131616	110131616	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:110131616C>T	uc003ymz.3	+	2	1145	c.1129C>T	c.(1129-1131)CTG>TTG	p.L377L		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	377	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			TGACACTTACCTGTCTGCCAC	0.423													24	74					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110424614	110424614	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:110424614G>A	uc003yne.2	+	20	2310	c.2206G>A	c.(2206-2208)GGA>AGA	p.G736R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	736	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ACGACCATATGGAGATATTTT	0.343										HNSCC(38;0.096)			5	16					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110471946	110471946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:110471946G>A	uc003yne.2	+	47	7231	c.7127G>A	c.(7126-7128)GGA>GAA	p.G2376E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2376	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTCCCTGATGGAACTCTGTTT	0.363										HNSCC(38;0.096)			13	22					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110510897	110510897	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:110510897G>A	uc003yne.2	+	67	10829	c.10725G>A	c.(10723-10725)GGG>GGA	p.G3575G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3575	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGAGAAGTGGGATTTGTTGGC	0.393										HNSCC(38;0.096)			10	20					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110520061	110520061	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:110520061A>G	uc003yne.2	+	69	11268	c.11164A>G	c.(11164-11166)AAG>GAG	p.K3722E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3722	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAGAATTCCTAAGGCGATGCT	0.433										HNSCC(38;0.096)			29	58					0	0	1	0	0
SYBU	55638	broad.mit.edu	37	8	110587670	110587670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:110587670C>T	uc003ynj.3	-	7	1620	c.1457G>A	c.(1456-1458)CGA>CAA	p.R486Q	SYBU_uc003yni.3_Missense_Mutation_p.R483Q|SYBU_uc003ynk.3_Missense_Mutation_p.R367Q|SYBU_uc010mco.2_Missense_Mutation_p.R485Q|SYBU_uc003ynl.3_Missense_Mutation_p.R485Q|SYBU_uc010mcp.2_Missense_Mutation_p.R486Q|SYBU_uc010mcq.2_Missense_Mutation_p.R486Q|SYBU_uc003yno.3_Missense_Mutation_p.R367Q|SYBU_uc010mcr.2_Missense_Mutation_p.R486Q|SYBU_uc003ynm.3_Missense_Mutation_p.R485Q|SYBU_uc003ynn.3_Missense_Mutation_p.R485Q|SYBU_uc010mcs.2_Missense_Mutation_p.R367Q|SYBU_uc010mct.2_Missense_Mutation_p.R486Q|SYBU_uc010mcu.2_Missense_Mutation_p.R485Q|SYBU_uc003ynp.3_Missense_Mutation_p.R418Q|SYBU_uc010mcv.2_Missense_Mutation_p.R486Q|SYBU_uc003ynh.3_Missense_Mutation_p.R280Q|SYBU_uc011lhw.1_Missense_Mutation_p.R356Q	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	486						cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						CTGAACGGCTCGCTCCACCAC	0.622													9	46					0	0	1	0	0
KCNV1	27012	broad.mit.edu	37	8	110980738	110980738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:110980738G>A	uc003ynr.3	-	3	1424	c.1082C>T	c.(1081-1083)TCA>TTA	p.S361L	KCNV1_uc010mcw.2_Missense_Mutation_p.S361L	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	361	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			TTCTACAGTTGAAAATATAGA	0.478													15	40					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114326902	114326902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:114326902C>T	uc003ynu.2	-	2	458	c.299G>A	c.(298-300)CGA>CAA	p.R100Q	CSMD3_uc003ynt.2_Missense_Mutation_p.R60Q|CSMD3_uc011lhx.1_Missense_Mutation_p.R100Q|CSMD3_uc010mcx.1_Missense_Mutation_p.R100Q|CSMD3_uc003ynx.3_Missense_Mutation_p.R100Q	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	100	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TATTCTATTTCGTTCTTCTGC	0.353										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			26	60					0	0	1	0	0
SLC30A8	169026	broad.mit.edu	37	8	118159388	118159388	+	Silent	SNP	C	T	T	rs114650878	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:118159388C>T	uc003yoh.2	+	2	497	c.267C>T	c.(265-267)GTC>GTT	p.V89V	SLC30A8_uc010mcz.2_Silent_p.V40V|SLC30A8_uc011lia.1_Silent_p.V40V|SLC30A8_uc003yog.2_Silent_p.V40V	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	89	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			TTGCAGAGGTCGTGGGTGAGT	0.413													61	144					0	0	1	0	0
SLC30A8	169026	broad.mit.edu	37	8	118183386	118183386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:118183386C>T	uc003yoh.2	+	7	1173	c.943C>T	c.(943-945)CTC>TTC	p.L315F	SLC30A8_uc010mcz.2_Missense_Mutation_p.L266F|SLC30A8_uc011lia.1_Missense_Mutation_p.L266F|SLC30A8_uc003yog.2_Missense_Mutation_p.L266F	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	315	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			TCAAGTAATTCTCTCAGCTCA	0.423													118	356					0	0	1	0	0
EXT1	2131	broad.mit.edu	37	8	118842550	118842550	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:118842550G>A	uc003yok.1	-	4	1976	c.1203C>T	c.(1201-1203)ATC>ATT	p.I401I		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	401	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			TAAGTGCTAGGATTTTATCCT	0.373			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				13	37					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121381648	121381648	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:121381648G>A	uc003yox.2	+	47	5500	c.5235G>A	c.(5233-5235)GGG>GGA	p.G1745G	COL14A1_uc003yoz.2_Silent_p.G710G	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1745	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GTCATCTGGGGGTTCCTGGAC	0.592													27	53					0	0	1	0	0
ZHX2	22882	broad.mit.edu	37	8	123964738	123964738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:123964738C>T	uc003ypk.1	+	3	1555	c.988C>T	c.(988-990)CGG>TGG	p.R330W		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	330	Required for interaction with NFYA.|Required for homodimerization.|Required for repressor activity.|Required for nuclear localization.					cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			GGAGGAGGCCCGGAAGAAGAT	0.597													21	94					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125083777	125083777	+	Missense_Mutation	SNP	G	A	A	rs139878625		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:125083777G>A	uc003yqw.2	+	31	4203	c.3997G>A	c.(3997-3999)GAT>AAT	p.D1333N	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1333	Cytoplasmic (Potential).					integral to membrane		p.D1333N(1)		ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AAGCCCCCAGGATTCTAGCTC	0.493													19	42					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125131160	125131160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:125131160G>A	uc003yqw.2	+	40	5571	c.5365G>A	c.(5365-5367)GAG>AAG	p.E1789K	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1789	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGCCCGAAAGGAGCCAGAGCC	0.502													8	32					0	0	1	0	0
KIAA0196	9897	broad.mit.edu	37	8	126091068	126091068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:126091068G>A	uc003yrt.2	-	6	952	c.623C>T	c.(622-624)CCC>CTC	p.P208L	KIAA0196_uc011lir.1_Missense_Mutation_p.P60L	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	208					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			ATAGCTCTCGGGATAGTTGGA	0.428													13	30					0	0	1	0	0
MYC	4609	broad.mit.edu	37	8	128750945	128750945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:128750945C>T	uc003ysh.1	+	3	950	c.437C>T	c.(436-438)TCA>TTA	p.S146L	MYC_uc003ysi.2_Missense_Mutation_p.S161L	NM_002467	NP_002458	P01106	MYC_HUMAN	myc proto-oncogene protein	146					branching involved in ureteric bud morphogenesis|cell cycle arrest|cell proliferation|cellular iron ion homeostasis|positive regulation of metanephric cap mesenchymal cell proliferation|positive regulation of transcription, DNA-dependent|regulation of telomere maintenance|regulation of transcription from RNA polymerase II promoter|response to drug	nucleolus|nucleoplasm	E-box binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(3)|ovary(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(1;6.19e-134)|all_epithelial(1;1.75e-119)|all_lung(1;5.66e-51)|Breast(1;1.08e-22)|all_neural(1;4.45e-21)|Medulloblastoma(1;1.88e-20)|Colorectal(1;1.92e-09)|Lung SC(1;4.52e-07)|Ovarian(5;0.000122)|Esophageal squamous(12;0.000995)|Renal(1;0.0921)|Hepatocellular(40;0.108)|Myeloproliferative disorder(2;0.135)|Melanoma(291;0.185)	Myeloproliferative disorder(644;0.0255)|Ovarian(118;0.0654)|Breast(495;0.212)|Acute lymphoblastic leukemia(644;0.22)	Epithelial(1;1.63e-94)|all cancers(1;5.82e-87)|OV - Ovarian serous cystadenocarcinoma(1;2.12e-71)|BRCA - Breast invasive adenocarcinoma(1;4.3e-14)|Lung(2;0.000381)|Colorectal(2;0.0102)|LUAD - Lung adenocarcinoma(14;0.0172)|READ - Rectum adenocarcinoma(2;0.0723)|LUSC - Lung squamous cell carcinoma(258;0.151)	KIRC - Kidney renal clear cell carcinoma(542;0.248)		AAGCTCGTCTCAGAGAAGCTG	0.622		3	A|T	IGK@|BCL5|BCL7A |BTG1|TRA@|IGH@	Burkitt lymphoma| amplified in other cancers|B-CLL						OREG0018982	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	32					0	0	1	0	0
ASAP1	50807	broad.mit.edu	37	8	131179807	131179807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:131179807G>A	uc003yta.1	-	10	912	c.884C>T	c.(883-885)TCC>TTC	p.S295F	ASAP1_uc003ysz.1_Missense_Mutation_p.S103F|ASAP1_uc011liw.1_Missense_Mutation_p.S288F	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	295					cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						TTGAAGAGAGGATTTTATTAA	0.358													62	166					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131955651	131955651	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:131955651C>T	uc003ytd.3	-	4	1555	c.1299G>A	c.(1297-1299)CAG>CAA	p.Q433Q	ADCY8_uc010mds.2_Silent_p.Q433Q	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	433	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TGACCAGCTCCTGAGCAGACA	0.483										HNSCC(32;0.087)			10	23					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141970	133141970	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:133141970G>A	uc003ytj.2	-	15	2383	c.2158C>T	c.(2158-2160)CTG>TTG	p.L720L	KCNQ3_uc010mdt.2_Silent_p.L708L	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	720					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CCTCGGGGCAGGTTCACAGGG	0.562													23	33					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133492557	133492557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:133492557C>T	uc003ytj.2	-	1	448	c.223G>A	c.(223-225)GAC>AAC	p.D75N	KCNQ3_uc010mdt.2_Missense_Mutation_p.D75N	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	75					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TGCCCCTCGTCGCGGCCGCCG	0.711													3	8					0	0	1	0	0
NDRG1	10397	broad.mit.edu	37	8	134260982	134260982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:134260982G>A	uc003yuh.2	-	11	1317	c.731C>T	c.(730-732)CCG>CTG	p.P244L	NDRG1_uc003yuf.1_Missense_Mutation_p.P55L|NDRG1_uc003yug.2_Missense_Mutation_p.P244L|NDRG1_uc010mee.2_Missense_Mutation_p.P163L|NDRG1_uc010mef.2_Missense_Mutation_p.P178L|NDRG1_uc011ljh.1_Missense_Mutation_p.P72L|NDRG1_uc011lji.1_Intron	NM_001135242	NP_001128714	Q92597	NDRG1_HUMAN	N-myc downstream regulated 1	244					cellular response to hypoxia|response to metal ion	cytoplasm|microtubule cytoskeleton|nucleus|plasma membrane	protein binding			ovary(4)	4	all_epithelial(106;4.26e-24)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			GTGGGTTCCCGGCATTGGTCG	0.592													34	61					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139145022	139145022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:139145022C>T	uc003yuy.2	-	20	4206	c.4035G>A	c.(4033-4035)ATG>ATA	p.M1345I	FAM135B_uc003yux.2_Missense_Mutation_p.M1246I|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1345										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GGTTGTTGATCATTTCTGCAT	0.502										HNSCC(54;0.14)			53	138					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139163460	139163460	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr8:139163460C>T	uc003yuy.2	-	13	3429	c.3258G>A	c.(3256-3258)GAG>GAA	p.E1086E	FAM135B_uc003yux.2_Silent_p.E987E|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.E648E|FAM135B_uc003yvb.2_Silent_p.E648E	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1086										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CACTGACTTCCTCATCCAACG	0.468										HNSCC(54;0.14)			8	24					0	0	1	0	0
DMRT3	58524	broad.mit.edu	37	9	990125	990125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:990125C>T	uc003zgw.1	+	2	577	c.539C>T	c.(538-540)TCC>TTC	p.S180F		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	180					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		CAGAGGAGTTCCCCAGATGTG	0.522													26	28					0	0	1	0	0
RCL1	10171	broad.mit.edu	37	9	4844531	4844532	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:4844531_4844532GG>AA	uc003zis.2	+	7	975_976	c.717_718GG>AA	c.(715-720)CCGGGC>CCAAGC	p.G240S	RCL1_uc003zit.2_Missense_Mutation_p.G82S|RCL1_uc010mhk.1_Missense_Mutation_p.G82S|RCL1_uc010mhl.1_Missense_Mutation_p.G54S	NM_005772	NP_005763	Q9Y2P8	RCL1_HUMAN	RNA terminal phosphate cyclase-like 1	240					ribosome biogenesis|RNA processing	nucleolus	RNA-3'-phosphate cyclase activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0206)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0244)		CCAGGTCTCCGGGCTTTGGGTT	0.515													23	75					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8492925	8492925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:8492925C>T	uc003zkk.2	-	26	3115	c.2404G>A	c.(2404-2406)GCC>ACC	p.A802T	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.A793T|PTPRD_uc003zkm.2_Missense_Mutation_p.A789T|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	802	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTTGTGTAGGCTGTGACGGTG	0.473										TSP Lung(15;0.13)			26	42					0	0	1	0	0
PSIP1	11168	broad.mit.edu	37	9	15472667	15472667	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:15472667G>A	uc003zlv.3	-	10	1270	c.940C>T	c.(940-942)CGA>TGA	p.R314*	PSIP1_uc003zlw.3_Nonsense_Mutation_p.R314*|PSIP1_uc003zlz.3_Nonsense_Mutation_p.R314*|PSIP1_uc003zma.3_Nonsense_Mutation_p.R305*|PSIP1_uc003zly.2_Nonsense_Mutation_p.R314*	NM_033222	NP_150091	O75475	PSIP1_HUMAN	PC4 and SFRS1 interacting protein 1 isoform 2	314	Potential.				initiation of viral infection|interspecies interaction between organisms|nuclear mRNA 5'-splice site recognition|provirus integration|regulation of transcription, DNA-dependent|response to heat|response to oxidative stress|transcription, DNA-dependent	cytosol|nuclear heterochromatin|nuclear periphery|nucleoplasm|nucleoplasm|transcriptionally active chromatin	activating transcription factor binding|chromatin binding|DNA secondary structure binding|RNA polymerase II transcription coactivator activity			breast(1)	1				GBM - Glioblastoma multiforme(50;2.38e-06)		TTGCGTTTTCGATCTGCTGCT	0.363													18	24					0	0	1	0	0
PTPLAD2	401494	broad.mit.edu	37	9	21029305	21029305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:21029305G>A	uc010miq.1	-	2	177	c.131C>T	c.(130-132)TCA>TTA	p.S44L	PTPLAD2_uc003zoj.1_Missense_Mutation_p.S7L|PTPLAD2_uc010mir.1_Missense_Mutation_p.S44L	NM_001010915	NP_001010915	Q5VWC8	HACD4_HUMAN	protein tyrosine phosphatase-like A domain	44	Lumenal (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	lyase activity			skin(1)	1				Lung(24;6.02e-14)|LUSC - Lung squamous cell carcinoma(38;1.29e-10)		TTTTCCAAATGAAAAGAATCT	0.308													14	34					0	0	1	0	0
VCP	7415	broad.mit.edu	37	9	35068289	35068289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:35068289C>T	uc003zvy.2	-	2	477	c.88G>A	c.(88-90)GAA>AAA	p.E30K	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_5'UTR|VCP_uc010mki.1_5'UTR	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	30					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			TTGATGGCTTCATCAACAATT	0.453													117	113					0	0	1	0	0
ALDH1B1	219	broad.mit.edu	37	9	38396184	38396184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:38396184C>T	uc004aay.2	+	2	551	c.439C>T	c.(439-441)CGG>TGG	p.R147W		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	147					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	CAAGGTGTATCGGTACTTTGC	0.557													37	39					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77339623	77339623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:77339623G>A	uc004ajl.1	-	39	6213	c.5975C>T	c.(5974-5976)TCC>TTC	p.S1992F	TRPM6_uc004ajk.1_Missense_Mutation_p.S1987F|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.S943F|TRPM6_uc010mpd.1_Missense_Mutation_p.S825F|TRPM6_uc010mpe.1_Missense_Mutation_p.S539F|TRPM6_uc004ajj.1_Missense_Mutation_p.S948F	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1992	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TCCAAAGGTGGAATTTATCCT	0.403													22	65					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78789959	78789959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:78789959C>T	uc004ajz.2	+	14	2352	c.1814C>T	c.(1813-1815)CCA>CTA	p.P605L	PCSK5_uc004ajy.2_Missense_Mutation_p.P605L|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	605					anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CCATATTCACCAACCAATGAA	0.463													16	54					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320216	79320216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:79320216G>A	uc010mpk.2	-	8	7098	c.6974C>T	c.(6973-6975)TCC>TTC	p.S2325F	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2325					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ATGGCCTTCGGATAATGTCAG	0.483													25	54					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79438604	79438604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:79438604C>T	uc010mpk.2	-	6	824	c.700G>A	c.(700-702)GAG>AAG	p.E234K	PRUNE2_uc004akn.2_Missense_Mutation_p.E234K	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	234					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCTGACAGCTCCTTTAGATCT	0.348													11	51					0	0	1	0	0
PSAT1	29968	broad.mit.edu	37	9	80919745	80919745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:80919745G>A	uc004ala.2	+	4	354	c.286G>A	c.(286-288)GGA>AGA	p.G96R	PSAT1_uc004alb.2_Missense_Mutation_p.G96R	NM_058179	NP_478059	Q9Y617	SERC_HUMAN	phosphoserine aminotransferase 1 isoform 1	96					L-serine biosynthetic process|pyridoxine biosynthetic process		O-phospho-L-serine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)	CTTGAAAGCAGGAAGGTGTGC	0.498													35	75					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90503550	90503550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:90503550C>T	uc004app.3	+	4	4183	c.4148C>T	c.(4147-4149)CCC>CTC	p.P1383L		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1383						integral to membrane				ovary(3)	3						AAAGCCACCCCCAAGGGCCAC	0.627													20	37					0	0	1	0	0
SYK	6850	broad.mit.edu	37	9	93640054	93640054	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:93640054G>A	uc004aqz.2	+	10	1588	c.1383G>A	c.(1381-1383)CAG>CAA	p.Q461Q	SYK_uc004ara.2_Silent_p.Q438Q|SYK_uc004arb.2_Silent_p.Q438Q|SYK_uc004arc.2_Silent_p.Q461Q|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	461	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						AGTATTTGCAGCAGAACAGGT	0.557			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								12	32					0	0	1	0	0
SPTLC1	10558	broad.mit.edu	37	9	94800617	94800617	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:94800617G>A	uc004arl.1	-	13	1205	c.1167C>T	c.(1165-1167)TCC>TCT	p.S389S	SPTLC1_uc011ltv.1_Silent_p.S389S	NM_006415	NP_006406	O15269	SPTC1_HUMAN	serine palmitoyltransferase subunit 1 isoform a	389	Cytoplasmic (Potential).					integral to membrane|SPOTS complex	protein binding|pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			ovary(1)|breast(1)	2					L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	CTGGAGAAAGGGACTCCCCCA	0.473													23	54					0	0	1	0	0
FBP1	2203	broad.mit.edu	37	9	97369204	97369204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:97369204C>T	uc004auw.3	-	5	929	c.598G>A	c.(598-600)GAT>AAT	p.D200N	FBP1_uc010mrl.2_Missense_Mutation_p.D200N	NM_000507	NP_000498	P09467	F16P1_HUMAN	fructose-1,6-bisphosphatase 1	200					gluconeogenesis	cytosol	fructose 1,6-bisphosphate 1-phosphatase activity|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding|metal ion binding				0		Acute lymphoblastic leukemia(62;0.136)			Adenosine monophosphate(DB00131)	ATCTTCACATCCTTGTCCACC	0.507													26	65					0	0	1	0	0
PTCH1	5727	broad.mit.edu	37	9	98232142	98232142	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:98232142T>A	uc004avk.3	-	13	1988	c.1800A>T	c.(1798-1800)TTA>TTT	p.L600F	PTCH1_uc010mro.2_Missense_Mutation_p.L449F|PTCH1_uc010mrp.2_Missense_Mutation_p.L449F|PTCH1_uc010mrq.2_Missense_Mutation_p.L449F|PTCH1_uc004avl.3_Missense_Mutation_p.L449F|PTCH1_uc010mrr.2_Missense_Mutation_p.L534F|PTCH1_uc004avm.3_Missense_Mutation_p.L599F|PTCH1_uc010mrs.1_Missense_Mutation_p.L268F	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	600	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.L600fs*22(1)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				CGCGTCGATATAAATCCATGC	0.443									Basal_Cell_Nevus_syndrome				36	75					0	0	1	0	0
C9orf21	195827	broad.mit.edu	37	9	99408285	99408285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:99408285G>A	uc004awm.2	-	5	479	c.443C>T	c.(442-444)TCA>TTA	p.S148L		NM_153698	NP_714542	Q7RTV5	CI021_HUMAN	hypothetical protein LOC195827	148							antioxidant activity|oxidoreductase activity			large_intestine(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GAGTAGATTTGATTTTATGTG	0.408													16	53					0	0	1	0	0
ZNF782	158431	broad.mit.edu	37	9	99581524	99581524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:99581524G>A	uc004awp.1	-	6	1062	c.781C>T	c.(781-783)CCT>TCT	p.P261S	ZNF782_uc011lup.1_Missense_Mutation_p.P129S	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	261					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				ATGTTCTGAGGAATAATAAAG	0.353													22	44					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101798462	101798462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:101798462G>A	uc004azb.1	+	20	2506	c.2300G>A	c.(2299-2301)GGA>GAA	p.G767E		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	767	Triple-helical region 3 (COL3).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GGTCTCAAAGGAGAGAAAGGA	0.493													17	54					0	0	1	0	0
INVS	27130	broad.mit.edu	37	9	103002492	103002492	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:103002492C>T	uc004bap.1	+	6	978	c.766C>T	c.(766-768)CGA>TGA	p.R256*	INVS_uc010mta.1_Nonsense_Mutation_p.R160*|INVS_uc011lve.1_Nonsense_Mutation_p.R160*|INVS_uc004bao.1_Nonsense_Mutation_p.R256*|INVS_uc004baq.1_Nonsense_Mutation_p.R160*|INVS_uc004bar.1_Nonsense_Mutation_p.R160*|INVS_uc010mtb.1_5'UTR	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	256	ANK 8.				negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				TAACTTATTTCGAACCCCACT	0.418													15	37					0	0	1	0	0
BAAT	570	broad.mit.edu	37	9	104125007	104125007	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:104125007G>A	uc010mtd.2	-	4	1069	c.960C>T	c.(958-960)TTC>TTT	p.F320F	BAAT_uc004bbd.3_Silent_p.F320F	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	320					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	CAATGAAGAGGAATTGCCCCT	0.473													38	74					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104448938	104448938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:104448938C>T	uc004bbp.1	-	2	1845	c.1244G>A	c.(1243-1245)AGC>AAC	p.S415N	GRIN3A_uc004bbq.1_Missense_Mutation_p.S415N	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	415	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GTTCATCGTGCTGGGAATGAG	0.478													30	55					0	0	1	0	0
GRIN3A	116443	broad.mit.edu	37	9	104449092	104449092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:104449092C>T	uc004bbp.1	-	2	1691	c.1090G>A	c.(1090-1092)GAA>AAA	p.E364K	GRIN3A_uc004bbq.1_Missense_Mutation_p.E364K	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	364	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GTCCTCAGTTCCTCCACATTC	0.512													9	21					0	0	1	0	0
CYLC2	1539	broad.mit.edu	37	9	105767323	105767323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:105767323G>A	uc004bbs.2	+	5	480	c.410G>A	c.(409-411)GGA>GAA	p.G137E		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	137	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				TTAaaacaaggaaaaaaagat	0.154													3	24					0	0	1	0	0
ACTL7A	10881	broad.mit.edu	37	9	111624689	111624689	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:111624689G>A	uc004bdj.1	+	1	87	c.87G>A	c.(85-87)CAG>CAA	p.Q29Q		NM_006687	NP_006678	Q9Y615	ACL7A_HUMAN	actin-like 7A	29						cytoplasm|cytoskeleton|protein complex	structural constituent of cytoskeleton				0						AGGCCCTCCAGACTGCCTCTT	0.612													16	42					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111936874	111936874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:111936874C>T	uc004bdz.1	-	26	2958	c.2663G>A	c.(2662-2664)AGA>AAA	p.R888K		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	888						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						CATCTTCTCTCTCTCCAGTTC	0.418													15	18					0	0	1	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112705126	112705126	+	Silent	SNP	C	A	A	rs149868902	byFrequency	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:112705126C>A	uc004bei.2	+	7	849	c.657C>A	c.(655-657)ACC>ACA	p.T219T	PALM2_uc004bef.2_Silent_p.T221T|PALM2_uc004beg.2_Silent_p.T187T|PALM2_uc004beh.3_Silent_p.T219T|PALM2-AKAP2_uc004bek.3_Intron|PALM2-AKAP2_uc004bej.3_Intron|PALM2-AKAP2_uc004bel.1_Intron	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	485							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						CAGGAGGCACCGTAGTAGAAA	0.468													4	42					0.000602214	0.000605682	1	1	0
SVEP1	79987	broad.mit.edu	37	9	113170129	113170129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:113170129G>A	uc010mtz.2	-	38	8088	c.7751C>T	c.(7750-7752)CCT>CTT	p.P2584L	SVEP1_uc010mty.2_Missense_Mutation_p.P510L	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2584	Sushi 20.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTGAAACCCAGGGAAGCAACT	0.488													17	67					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113459612	113459613	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:113459612_113459613CC>TT	uc004bey.2	+	5	592_593	c.494_495CC>TT	c.(493-495)TCC>TTT	p.S165F	MUSK_uc004bex.2_Missense_Mutation_p.S165F	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	165	Ig-like 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CAGGAAAATTCCCGAATTGCAG	0.401													47	156					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113496637	113496637	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:113496637G>A	uc004bey.2	+	6	833	c.735G>A	c.(733-735)TGG>TGA	p.W245*	MUSK_uc004bex.2_Nonsense_Mutation_p.W255*	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	245	Ig-like 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CCATCACCTGGATTGAAAACG	0.512													25	47					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113538218	113538218	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:113538218G>A	uc004bey.2	+	9	1433	c.1335G>A	c.(1333-1335)ACG>ACA	p.T445T	MUSK_uc004bez.1_Silent_p.T33T	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	445	FZ.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						GGGACCCCACGGCCTGTGCCA	0.473													47	129					0	0	1	0	0
MUSK	4593	broad.mit.edu	37	9	113550028	113550028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:113550028G>A	uc004bey.2	+	13	1935	c.1837G>A	c.(1837-1839)GAA>AAA	p.E613K	MUSK_uc004bez.1_Missense_Mutation_p.E193K	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	613	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						GATGCTCAAAGAAGAAGCCTC	0.433													11	21					0	0	1	0	0
KIAA0368	23392	broad.mit.edu	37	9	114132741	114132741	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:114132741T>G	uc004bfe.1	-	46	5482	c.5482A>C	c.(5482-5484)AAC>CAC	p.N1828H		NM_001080398	NP_001073867			KIAA0368 protein												0						ATGACAATGTTAGAGAACTCC	0.373													6	14					0	0	1	0	0
FKBP15	23307	broad.mit.edu	37	9	115940943	115940943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:115940943C>T	uc004bgs.2	-	20	2171	c.2053G>A	c.(2053-2055)GGC>AGC	p.G685S	FKBP15_uc010muu.1_Missense_Mutation_p.G749S|FKBP15_uc004bgr.2_Missense_Mutation_p.G122S|FKBP15_uc011lxc.1_Missense_Mutation_p.G266S|FKBP15_uc011lxd.1_Missense_Mutation_p.G617S|FKBP15_uc010mut.1_Missense_Mutation_p.G553S	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	685	Potential.				endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						GTGAGCTGGCCCCTGAGAAGA	0.483													5	10					0	0	1	0	0
COL27A1	85301	broad.mit.edu	37	9	117063375	117063375	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:117063375C>T	uc011lxl.1	+	52	4725	c.4725C>T	c.(4723-4725)CCC>CCT	p.P1575P	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1575	Pro-rich.|Collagen-like 16.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						TCGTCGGGCCCCTCGGAATCC	0.612													12	44					0	0	1	0	0
TNFSF15	9966	broad.mit.edu	37	9	117553070	117553070	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:117553070G>A	uc004bjh.2	-	4	534	c.418C>T	c.(418-420)CTG>TTG	p.L140L	TNFSF15_uc004bjg.2_Silent_p.L81L	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	140	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						TCTGGGATCAGCAGGAATTTG	0.488													23	43					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117845000	117845000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:117845000C>T	uc004bjj.3	-	5	2580	c.2218G>A	c.(2218-2220)GAA>AAA	p.E740K	TNC_uc010mvf.2_Missense_Mutation_p.E740K	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	740	Fibronectin type-III 2.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TCCCAGGTTTCAAAAGCAATG	0.433													23	41					0	0	1	0	0
TLR4	7099	broad.mit.edu	37	9	120475004	120475004	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:120475004C>T	uc004bjz.2	+	3	889	c.598C>T	c.(598-600)CAA>TAA	p.Q200*	TLR4_uc004bka.2_Nonsense_Mutation_p.Q160*|TLR4_uc004bkb.2_5'UTR	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	200	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GGTTCTACATCAAATGCCCCT	0.393													24	54					0	0	1	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123165272	123165272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:123165272G>A	uc004bkf.2	-	34	5300	c.5119C>T	c.(5119-5121)CCG>TCG	p.P1707S	CDK5RAP2_uc010mvi.2_Missense_Mutation_p.P716S|CDK5RAP2_uc004bke.2_Missense_Mutation_p.P992S|CDK5RAP2_uc004bkg.2_Missense_Mutation_p.P1628S|CDK5RAP2_uc011lxw.1_Missense_Mutation_p.P972S|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_Missense_Mutation_p.P972S|CDK5RAP2_uc011lya.1_Missense_Mutation_p.P972S|CDK5RAP2_uc004bkh.1_Missense_Mutation_p.P1477S	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	1707					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						GACACACACGGAGTGCTAGTT	0.567													31	54					0	0	1	0	0
CEP110	11064	broad.mit.edu	37	9	123911110	123911110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:123911110G>A	uc004bkx.1	+	22	3651	c.3620G>A	c.(3619-3621)AGT>AAT	p.S1207N	CEP110_uc004bky.1_Missense_Mutation_p.S811N|CEP110_uc004bla.1_Missense_Mutation_p.S655N|CEP110_uc010mvo.1_Translation_Start_Site	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1207					cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						CCCATCAGGAGTGGGTTACAT	0.458													9	31					0	0	1	0	0
OR1J4	26219	broad.mit.edu	37	9	125281862	125281862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:125281862C>T	uc011lyw.1	+	1	443	c.443C>T	c.(442-444)TCC>TTC	p.S148F		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTCACTGTGTCCTGGATCCTC	0.512													29	74					0	0	1	0	0
OR1J4	26219	broad.mit.edu	37	9	125282145	125282145	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:125282145C>T	uc011lyw.1	+	1	726	c.726C>T	c.(724-726)GGC>GGT	p.G242G		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCACCTGTGGCTCTCACCTCT	0.473													25	44					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125424093	125424093	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:125424093C>T	uc011lza.1	+	1	249	c.249C>T	c.(247-249)CCC>CCT	p.P83P		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	83	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TGTTCCTCCCCATCTACCTTA	0.493													25	41					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126128261	126128261	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:126128261C>T	uc004bnx.1	+	3	576	c.484C>T	c.(484-486)CTG>TTG	p.L162L	CRB2_uc004bnw.1_Silent_p.L162L	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	162	Extracellular (Potential).|EGF-like 3; calcium-binding (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GGGCTCGTGCCTGGACGGCGT	0.706													8	14					0	0	1	0	0
MIR181A2	406954	broad.mit.edu	37	9	127454826	127454827	+	RNA	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:127454826_127454827CC>TT	hsa-mir-181a-2|MI0000269	+			c.106_107CC>TT			NR6A1_uc004boq.1_Intron|NR6A1_uc004bor.1_Intron|NR6A1_uc010mwq.1_Intron|uc004bou.2_5'Flank|MIR181B2_hsa-mir-181b-2|MI0000683_5'Flank																	0						ACCTTGGGGTCCTTACAGACGA	0.485													7	17					0	0	1	0	0
RABEPK	10244	broad.mit.edu	37	9	127994991	127994992	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:127994991_127994992GG>AA	uc004bpi.2	+	8	966_967	c.793_794GG>AA	c.(793-795)GGA>AAA	p.G265K	RABEPK_uc004bpj.2_Missense_Mutation_p.G214K|RABEPK_uc004bpk.2_Missense_Mutation_p.G265K|RABEPK_uc004bpl.1_Missense_Mutation_p.G214K|RABEPK_uc004bpm.2_Missense_Mutation_p.G265K	NM_005833	NP_005824	Q7Z6M1	RABEK_HUMAN	Rab9 effector protein with kelch motifs	265	Kelch 5.				receptor-mediated endocytosis|vesicle docking involved in exocytosis	endosome membrane|plasma membrane				ovary(1)	1						GACTCCTGCAGGAGCACTGGAC	0.47													11	30					0	0	1	0	0
LMX1B	4010	broad.mit.edu	37	9	129453307	129453307	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:129453307G>A	uc004bqj.2	+	3	500	c.450G>A	c.(448-450)AAG>AAA	p.K150K	LMX1B_uc004bqi.2_Silent_p.K150K|LMX1B_uc011maa.1_Silent_p.K150K	NM_002316	NP_002307	O60663	LMX1B_HUMAN	LIM homeobox transcription factor 1, beta	150					dorsal/ventral pattern formation|in utero embryonic development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGAAGGAGAAGGACCTGCTCA	0.657									Nail-Patella_Syndrome				7	14					0	0	1	0	0
ZNF79	7633	broad.mit.edu	37	9	130207399	130207399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:130207399G>A	uc004bqw.3	+	5	1834	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K	ZNF79_uc011maf.1_Missense_Mutation_p.E450K|ZNF79_uc011mag.1_Missense_Mutation_p.E450K	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	474	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						GAAACCCTACGAATGCAGCGA	0.507													56	143					0	0	1	0	0
TOR2A	27433	broad.mit.edu	37	9	130494359	130494359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:130494359G>A	uc004brs.3	-	5	975	c.920C>T	c.(919-921)TCC>TTC	p.S307F	TOR2A_uc004brt.3_3'UTR|TOR2A_uc004brw.3_3'UTR|TOR2A_uc011maj.1_3'UTR|TOR2A_uc004bru.3_Missense_Mutation_p.S145F|TOR2A_uc004brv.3_RNA|TOR2A_uc004brx.1_3'UTR	NM_001085347	NP_001078816	Q5JU69	TOR2A_HUMAN	torsin family 2, member A isoform a	307					chaperone mediated protein folding requiring cofactor	endoplasmic reticulum|extracellular region	ATP binding|nucleoside-triphosphatase activity				0						GCAGCCGTTGGAGGAGAAGAG	0.627													31	61					0	0	1	0	0
ST6GALNAC6	30815	broad.mit.edu	37	9	130656950	130656950	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:130656950G>A	uc004bso.1	-	4	257	c.138C>T	c.(136-138)TTC>TTT	p.F46F	ST6GALNAC6_uc004bsn.1_Silent_p.F12F|ST6GALNAC6_uc011man.1_5'UTR|ST6GALNAC6_uc004bsp.1_Silent_p.F46F|ST6GALNAC6_uc004bsq.1_Silent_p.F12F|ST6GALNAC6_uc004bsr.2_Silent_p.F12F|ST6GALNAC6_uc010mxp.1_RNA	NM_013443	NP_038471	Q969X2	SIA7F_HUMAN	sialytransferase 7F	46	Helical; Signal-anchor for type II membrane protein; (Potential).				protein glycosylation	integral to Golgi membrane|plasma membrane					0						AGAGGATCACGAACACTGCTG	0.562													32	69					0	0	1	0	0
SPTAN1	6709	broad.mit.edu	37	9	131346163	131346163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:131346163C>T	uc004bvl.3	+	16	2221	c.2108C>T	c.(2107-2109)TCG>TTG	p.S703L	SPTAN1_uc011mbg.1_Missense_Mutation_p.S703L|SPTAN1_uc011mbh.1_Missense_Mutation_p.S715L|SPTAN1_uc004bvm.3_Missense_Mutation_p.S703L|SPTAN1_uc004bvn.3_Missense_Mutation_p.S703L	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	703	Spectrin 8.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						CACTTGGCTTCGGATGATTAC	0.448													16	61					0	0	1	0	0
SH3GLB2	56904	broad.mit.edu	37	9	131777080	131777081	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:131777080_131777081GT>AA	uc004bwv.2	-	4	583_584	c.437_438AC>TT	c.(436-438)AAC>ATT	p.N146I	SH3GLB2_uc004bww.2_Missense_Mutation_p.N146I|SH3GLB2_uc004bwx.1_Missense_Mutation_p.N146I|SH3GLB2_uc011mbm.1_Missense_Mutation_p.N146I	NM_020145	NP_064530	Q9NR46	SHLB2_HUMAN	SH3-domain GRB2-like endophilin B2	146	BAR.				filopodium assembly|signal transduction	cytoplasm|nucleus	cytoskeletal adaptor activity|SH3 domain binding				0						CCTCCAGGAAGTTGCGCAAGGG	0.564													30	76					0	0	1	0	0
DOLPP1	57171	broad.mit.edu	37	9	131847310	131847310	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:131847310C>T	uc004bxc.2	+	3	214	c.186C>T	c.(184-186)TTC>TTT	p.F62F	DOLPP1_uc004bxd.2_Silent_p.F62F|DOLPP1_uc004bxe.2_Intron|DOLPP1_uc004bxf.2_5'Flank	NM_020438	NP_065171	Q86YN1	DOPP1_HUMAN	dolichyl pyrophosphate phosphatase 1 isoform a	62					dolichyl diphosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane	dolichyldiphosphatase activity			skin(1)	1						AGATCTCCTTCCTTGGGGGCC	0.612													18	33					0	0	1	0	0
ABL1	25	broad.mit.edu	37	9	133760588	133760588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:133760588C>T	uc004bzw.2	+	11	2914	c.2911C>T	c.(2911-2913)CCG>TCG	p.P971S	ABL1_uc004bzv.2_Missense_Mutation_p.P990S	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	971	F-actin-binding.|Pro-rich.				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	GTCCGCCAAGCCGTCGGGGAC	0.672			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								30	69					0	0	1	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134501399	134501399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:134501399G>A	uc004cbc.2	-	10	1691	c.1561C>T	c.(1561-1563)CCT>TCT	p.P521S	RAPGEF1_uc004cbb.2_Missense_Mutation_p.P539S|RAPGEF1_uc010mzm.2_RNA|RAPGEF1_uc010mzn.2_Missense_Mutation_p.P526S|RAPGEF1_uc004cbd.2_Missense_Mutation_p.P526S	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	521					activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		AATTCGACAGGGGCTGAGGAA	0.537													12	29					0	0	1	0	0
RXRA	6256	broad.mit.edu	37	9	137300902	137300902	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:137300902C>T	uc004cfb.2	+	4	709	c.547C>T	c.(547-549)CAG>TAG	p.Q183*	RXRA_uc004cfc.1_Nonsense_Mutation_p.Q86*	NM_002957	NP_002948	P19793	RXRA_HUMAN	retinoid X receptor, alpha	183	NR C4-type.|Nuclear receptor.				cellular lipid metabolic process|cholesterol metabolic process|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid|vitamin metabolic process	nuclear chromatin|nucleoplasm	enzyme binding|ligand-regulated transcription factor activity|protein heterodimerization activity|retinoic acid-responsive element binding|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|transcription coactivator activity|vitamin D receptor binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(145;4.66e-08)|Epithelial(140;6.72e-08)|all cancers(34;2.22e-07)	Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)	TGACAAGCGGCAGCGGAACCG	0.652													26	64					0	0	1	0	0
RXRA	6256	broad.mit.edu	37	9	137320993	137320993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:137320993C>T	uc004cfb.2	+	7	1112	c.950C>T	c.(949-951)TCC>TTC	p.S317F	RXRA_uc004cfc.1_Missense_Mutation_p.S220F	NM_002957	NP_002948	P19793	RXRA_HUMAN	retinoid X receptor, alpha	317	Ligand-binding.				cellular lipid metabolic process|cholesterol metabolic process|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid|vitamin metabolic process	nuclear chromatin|nucleoplasm	enzyme binding|ligand-regulated transcription factor activity|protein heterodimerization activity|retinoic acid-responsive element binding|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|transcription coactivator activity|vitamin D receptor binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(145;4.66e-08)|Epithelial(140;6.72e-08)|all cancers(34;2.22e-07)	Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)	TCCCACCGCTCCATCGCCGTG	0.687													32	81					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137622145	137622145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:137622145G>A	uc004cfe.2	+	7	1370	c.988G>A	c.(988-990)GAA>AAA	p.E330K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	330	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GGCTGGGAAGGAAGAGGACGT	0.617													43	90					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137676936	137676936	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:137676936G>A	uc004cfe.2	+	30	2968	c.2586G>A	c.(2584-2586)GGG>GGA	p.G862G		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	862	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GACCCCCTGGGGAGAAGGTTT	0.657													11	34					0	0	1	0	0
KIAA0649	9858	broad.mit.edu	37	9	138377661	138377661	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:138377661C>T	uc004cfr.1	+	4	1854	c.1305C>T	c.(1303-1305)GAC>GAT	p.D435D		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	435						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		AGACCATGGACCCTGGTCCAG	0.592													7	21					0	0	1	0	0
CARD9	64170	broad.mit.edu	37	9	139259614	139259614	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:139259614C>T	uc004chg.3	-	11	1579	c.1413G>A	c.(1411-1413)GAG>GAA	p.E471E	DNLZ_uc004chf.1_5'Flank|DNLZ_uc011mdv.1_5'Flank|CARD9_uc011mdw.1_Silent_p.E471E	NM_052813	NP_434700	Q9H257	CARD9_HUMAN	caspase recruitment domain protein 9 isoform 1	471					positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JNK cascade|positive regulation of stress-activated MAPK cascade|regulation of apoptosis	cytoplasm	CARD domain binding|protein homodimerization activity			pancreas(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;4.58e-06)|Epithelial(140;5.65e-06)		GCAAAACCTGCTCCTGGTGCA	0.672													23	33					0	0	1	0	0
NDOR1	27158	broad.mit.edu	37	9	140109371	140109372	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:140109371_140109372CC>TT	uc004clw.2	+	8	1077_1078	c.966_967CC>TT	c.(964-969)CTCCAT>CTTTAT	p.H323Y	NDOR1_uc004clx.2_Missense_Mutation_p.H323Y|NDOR1_uc011mes.1_Missense_Mutation_p.H323Y|NDOR1_uc004cly.2_Missense_Mutation_p.H289Y	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	323	FAD-binding FR-type.				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		GTCTATCCCTCCATGAGCTGGA	0.629													21	59					0	0	1	0	0
NDOR1	27158	broad.mit.edu	37	9	140110191	140110191	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:140110191G>T	uc004clw.2	+	11	1480	c.1369G>T	c.(1369-1371)GGG>TGG	p.G457W	NDOR1_uc004clx.2_Missense_Mutation_p.G457W|NDOR1_uc011mes.1_Missense_Mutation_p.G450W|NDOR1_uc004cly.2_Missense_Mutation_p.G423W	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	457	NADP (By similarity).				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		GATCATGGTGGGGCCTGGCAC	0.667													4	82					1	1	1	1	0
PNPLA7	375775	broad.mit.edu	37	9	140389596	140389596	+	Silent	SNP	C	T	T	rs141852500	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:140389596C>T	uc004cnf.2	-	18	2278	c.1941G>A	c.(1939-1941)GTG>GTA	p.V647V	C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Silent_p.V672V	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	647	cNMP 3.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		TCAGTGTCTCCACCTGAGGAC	0.687													25	38					0	0	1	0	0
PNPLA7	375775	broad.mit.edu	37	9	140395161	140395161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:140395161G>A	uc004cnf.2	-	15	2001	c.1664C>T	c.(1663-1665)TCC>TTC	p.S555F	C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Missense_Mutation_p.S580F	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	555	cNMP 2.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GTGGGCCTTGGAGATGGACAG	0.697													13	31					0	0	1	0	0
EHMT1	79813	broad.mit.edu	37	9	140729357	140729357	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:140729357G>A	uc011mfc.1	+	27	3886	c.3849G>A	c.(3847-3849)GAG>GAA	p.E1283E	EHMT1_uc004coe.2_Silent_p.E188E	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	1283					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		AGGCCCAGGAGGACGGCTTGC	0.766													4	8					0	0	1	0	0
SHOX	6473	broad.mit.edu	37	X	595510	595510	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:595510C>T	uc004cph.1	+	3	1126	c.435C>T	c.(433-435)TTC>TTT	p.F145F	SHOX_uc004cpi.2_Silent_p.F145F	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	145	Homeobox.				skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCGACGCCTTCATGCGCGAGG	0.562													6	13					0	0	1	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407431	1407431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:1407431C>T	uc010nct.2	+	6	561	c.239C>T	c.(238-240)TCG>TTG	p.S80L	CSF2RA_uc011mhb.1_Missense_Mutation_p.S80L|CSF2RA_uc004cpq.2_Missense_Mutation_p.S80L|CSF2RA_uc004cpn.2_Missense_Mutation_p.S80L|CSF2RA_uc004cpo.2_Missense_Mutation_p.S80L|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_5'UTR|CSF2RA_uc004cpp.2_Missense_Mutation_p.S80L|CSF2RA_uc010ncv.2_Missense_Mutation_p.S80L|CSF2RA_uc004cpr.2_Missense_Mutation_p.S80L	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	80	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AACGAATGTTCGTGCACATTT	0.353													82	210					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3228225	3228225	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:3228225G>A	uc004crg.3	-	7	8176	c.8019C>T	c.(8017-8019)CTC>CTT	p.L2673L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2673	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGCCATTGGGGAGCGTCCAGG	0.602													33	78					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3242075	3242075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:3242075C>T	uc004crg.3	-	5	1808	c.1651G>A	c.(1651-1653)GGC>AGC	p.G551S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	551	Ig-like C2-type 1.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGGTACAAGCCTGAGTCAGAT	0.537													8	31					0	0	1	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811469	5811469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:5811469G>A	uc010ndh.2	-	6	2341	c.1840C>T	c.(1840-1842)CCT>TCT	p.P614S	NLGN4X_uc004crp.2_Missense_Mutation_p.P634S|NLGN4X_uc004crq.2_Missense_Mutation_p.P614S|NLGN4X_uc010ndi.2_Missense_Mutation_p.P651S|NLGN4X_uc004crr.2_Missense_Mutation_p.P614S|NLGN4X_uc010ndj.2_Missense_Mutation_p.P614S	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	614	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						TCTGGTGGAGGAACCTTTGTG	0.502													39	97					0	0	1	0	0
PNPLA4	8228	broad.mit.edu	37	X	7894014	7894014	+	Silent	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:7894014A>G	uc011mhq.1	-	2	309	c.147T>C	c.(145-147)GCT>GCC	p.A49A	PNPLA4_uc011mhr.1_Silent_p.A49A|PNPLA4_uc011mhs.1_Intron	NM_004650	NP_004641	P41247	PLPL4_HUMAN	patatin-like phospholipase domain containing 4	49	Patatin.				lipid catabolic process		triglyceride lipase activity				0		Colorectal(8;0.0329)|Medulloblastoma(8;0.232)				GCAGAACAGAAGCAACCAACG	0.458											OREG0019651	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	41					0	0	1	0	0
ARHGAP6	395	broad.mit.edu	37	X	11174743	11174743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:11174743G>A	uc004cup.1	-	10	2686	c.1813C>T	c.(1813-1815)CCC>TCC	p.P605S	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Missense_Mutation_p.P605S|ARHGAP6_uc004cum.1_Missense_Mutation_p.P402S|ARHGAP6_uc004cun.1_Missense_Mutation_p.P425S|ARHGAP6_uc010neb.1_Missense_Mutation_p.P427S|ARHGAP6_uc011mif.1_Missense_Mutation_p.P402S	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	605					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						AGATCTGGGGGAACCTGAAGG	0.448													8	27					0	0	1	0	0
MSL3	10943	broad.mit.edu	37	X	11790756	11790756	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:11790756C>T	uc004cuw.2	+	12	1503	c.1398C>T	c.(1396-1398)ATC>ATT	p.I466I	MSL3_uc004cux.2_Silent_p.I407I|MSL3_uc011mig.1_Silent_p.I317I|MSL3_uc011mih.1_Silent_p.I454I|MSL3_uc004cuy.2_Silent_p.I300I	NM_078629	NP_523353	Q8N5Y2	MS3L1_HUMAN	male-specific lethal 3-like 1 isoform a	466					histone H4-K16 acetylation|multicellular organismal development|transcription from RNA polymerase II promoter	MSL complex	DNA binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTCCAGAAATCCTTGGAAAGA	0.363													10	39					0	0	1	0	0
FRMPD4	9758	broad.mit.edu	37	X	12708397	12708397	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:12708397G>A	uc004cuz.1	+	8	1271	c.765G>A	c.(763-765)GGG>GGA	p.G255G	FRMPD4_uc011mij.1_Silent_p.G247G	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	255	FERM.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GGACAGAAGGGGCTGGAACGA	0.483													40	89					0	0	1	0	0
FRMPD4	9758	broad.mit.edu	37	X	12734739	12734739	+	Missense_Mutation	SNP	G	A	A	rs147167664		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:12734739G>A	uc004cuz.1	+	15	2667	c.2161G>A	c.(2161-2163)GAT>AAT	p.D721N	FRMPD4_uc011mij.1_Missense_Mutation_p.D713N	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	721					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						AAACATAGGCGATGTGAAGAG	0.522													75	151					0	0	1	0	0
FRMPD4	9758	broad.mit.edu	37	X	12734932	12734932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:12734932C>T	uc004cuz.1	+	15	2860	c.2354C>T	c.(2353-2355)TCC>TTC	p.S785F	FRMPD4_uc011mij.1_Missense_Mutation_p.S777F	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	785					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GACCTCACATCCCTGCCCCCT	0.572													47	122					0	0	1	0	0
EGFL6	25975	broad.mit.edu	37	X	13621442	13621442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:13621442G>A	uc004cvi.2	+	5	647	c.407G>A	c.(406-408)AGG>AAG	p.R136K	EGFL6_uc004cvj.2_Missense_Mutation_p.R136K|EGFL6_uc011mik.1_Missense_Mutation_p.R37K	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	136					cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						TCAGACTCTAGGACATGTGCC	0.448													30	97					0	0	1	0	0
EGFL6	25975	broad.mit.edu	37	X	13624618	13624618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:13624618G>A	uc004cvi.2	+	6	881	c.641G>A	c.(640-642)CGA>CAA	p.R214Q	EGFL6_uc004cvj.2_Missense_Mutation_p.R214Q|EGFL6_uc011mik.1_Missense_Mutation_p.R115Q	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	214					cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						ATCAGTGGACGATATGACTGT	0.403													36	82					0	0	1	0	0
GLRA2	2742	broad.mit.edu	37	X	14708900	14708900	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:14708900G>A	uc010nep.2	+	9	1331	c.999G>A	c.(997-999)CTG>CTA	p.L333L	GLRA2_uc010neq.2_Silent_p.L333L|GLRA2_uc004cwe.3_Silent_p.L333L|GLRA2_uc011mio.1_Silent_p.L244L|GLRA2_uc011mip.1_Silent_p.L311L	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	333	Helical; (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	CTGCCTTACTGGAATACGCAG	0.428													30	57					0	0	1	0	0
ACE2	59272	broad.mit.edu	37	X	15582305	15582305	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:15582305C>T	uc004cxa.1	-	17	2319	c.2151G>A	c.(2149-2151)CTG>CTA	p.L717L	ACE2_uc004cxb.2_Silent_p.L717L	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	717	Extracellular (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	TGTTGTCATTCAGACGGAAAG	0.438													53	99					0	0	1	0	0
SCML2	10389	broad.mit.edu	37	X	18259384	18259384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:18259384C>T	uc004cyl.2	-	15	2247	c.2090G>A	c.(2089-2091)GGA>GAA	p.G697E	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_3'UTR|SCML2_uc011miz.1_3'UTR|SCML2_uc010nfc.2_3'UTR	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	697	SAM.				anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					ACTGTATTTTCCTTCTTTAAG	0.338													17	57					0	0	1	0	0
YY2	404281	broad.mit.edu	37	X	21863441	21863441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:21863441C>T	uc010nfq.2	+	3	574	c.377C>T	c.(376-378)TCT>TTT	p.S126F	MBTPS2_uc004dae.2_Missense_Mutation_p.S126F|MBTPS2_uc004dab.2_Missense_Mutation_p.S126F	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						tcttcttcctcttcctcttct	0.234													13	31					0	0	1	0	0
YY2	404281	broad.mit.edu	37	X	21871589	21871589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:21871589C>T	uc010nfq.2	+	5	835	c.638C>T	c.(637-639)TCG>TTG	p.S213L	MBTPS2_uc004dae.2_Missense_Mutation_p.S213L|MBTPS2_uc010nfr.2_5'UTR|MBTPS2_uc004dab.2_Missense_Mutation_p.S213L	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	Error:Variant_position_missing_in_O15391_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CAACTTATATCGCCAGTCCAG	0.353													43	99					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23411622	23411622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:23411622G>A	uc004dal.3	+	3	1995	c.1987G>A	c.(1987-1989)GAT>AAT	p.D663N		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	663					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						AGAACTCTATGATCTCTTGGA	0.433													15	40					0	0	1	0	0
ACOT9	23597	broad.mit.edu	37	X	23722031	23722031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:23722031C>T	uc004dap.2	-	15	1446	c.1300G>A	c.(1300-1302)GAC>AAC	p.D434N	ACOT9_uc004dan.2_Missense_Mutation_p.D184N|ACOT9_uc004dao.2_Missense_Mutation_p.D443N|ACOT9_uc004daq.2_Missense_Mutation_p.D392N|ACOT9_uc004dar.2_Missense_Mutation_p.D374N|ACOT9_uc011mjt.1_RNA|ACOT9_uc004das.2_Missense_Mutation_p.D374N	NM_001033583	NP_001028755	Q9Y305	ACOT9_HUMAN	acyl-Coenzyme A thioesterase 2, mitochondrial	434					acyl-CoA metabolic process	mitochondrion	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(2)|pancreas(1)	3						ACAAGGTAGTCCTTTCTCAAG	0.463													22	48					0	0	1	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157999	26157999	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:26157999C>T	uc004dbq.1	+	2	1084	c.897C>T	c.(895-897)TTC>TTT	p.F299F		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	299	MAGE.						protein binding			central_nervous_system(1)	1						CTAGTGCCTTCCCATCCTGCT	0.517													5	20					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27839460	27839460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:27839460G>A	uc004dbw.2	+	3	264	c.37G>A	c.(37-39)GAA>AAA	p.E13K		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	13										lung(1)|breast(1)|central_nervous_system(1)	3						CCGTGCCAGGGAAAAACGCCG	0.527													15	39					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998321	27998321	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:27998321C>T	uc004dbx.1	-	1	1246	c.1131G>A	c.(1129-1131)AAG>AAA	p.K377K		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	377										ovary(3)|skin(1)	4						GAGTGAATTTCTTGAGTACTC	0.423													20	57					0	0	1	0	0
MAGEB1	4112	broad.mit.edu	37	X	30269469	30269469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:30269469G>A	uc004dcc.2	+	4	1179	c.859G>A	c.(859-861)GAG>AAG	p.E287K	MAGEB1_uc004dcd.2_Missense_Mutation_p.E287K|MAGEB1_uc004dce.2_Missense_Mutation_p.E287K	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	287	MAGE.										0						GAAAGTCCTCGAGTTTTTGGC	0.512													20	68					0	0	1	0	0
DMD	1756	broad.mit.edu	37	X	31697516	31697516	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:31697516G>A	uc004dda.1	-	53	8092	c.7848C>T	c.(7846-7848)ATC>ATT	p.I2616I	DMD_uc004dcr.1_Silent_p.I156I|DMD_uc004dcs.1_Silent_p.I156I|DMD_uc004dct.1_Silent_p.I156I|DMD_uc004dcu.1_Silent_p.I156I|DMD_uc004dcv.1_Silent_p.I156I|DMD_uc004dcw.2_Silent_p.I1272I|DMD_uc004dcx.2_Silent_p.I1275I|DMD_uc004dcz.2_Silent_p.I2493I|DMD_uc004dcy.1_Silent_p.I2612I|DMD_uc004ddb.1_Silent_p.I2608I	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2616	Spectrin 18.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TTTTCTTTTGGATTGCATCTA	0.373													3	12					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34148678	34148678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:34148678G>A	uc004ddg.2	-	1	1751	c.1718C>T	c.(1717-1719)CCC>CTC	p.P573L		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	573										ovary(4)|central_nervous_system(1)	5						TCGAATCTTGGGAGGCTCCGA	0.517													24	57					0	0	1	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820547	35820547	+	Silent	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:35820547C>A	uc010ngt.1	+	2	513	c.234C>A	c.(232-234)ACC>ACA	p.T78T		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	78										lung(3)|ovary(2)|breast(1)|skin(1)	7						TCACAACCACCTCATCAAGTG	0.512													6	22					1.06961e-07	1.07992e-07	1	1	0
CXorf22	170063	broad.mit.edu	37	X	35993308	35993308	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:35993308A>T	uc004ddj.2	+	14	2358	c.2299A>T	c.(2299-2301)AAT>TAT	p.N767Y	CXorf22_uc010ngv.2_Intron	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	767										large_intestine(1)|lung(1)|ovary(1)	3						GAACTCTCCAAATACTCATCT	0.313													24	64					0	0	1	0	0
CXorf22	170063	broad.mit.edu	37	X	35993312	35993312	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:35993312C>A	uc004ddj.2	+	14	2362	c.2303C>A	c.(2302-2304)ACT>AAT	p.T768N	CXorf22_uc010ngv.2_Intron	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	768										large_intestine(1)|lung(1)|ovary(1)	3						TCTCCAAATACTCATCTACTT	0.328													27	64					9.39395e-14	9.57671e-14	1	1	0
FAM47C	442444	broad.mit.edu	37	X	37028054	37028054	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:37028054C>A	uc004ddl.1	+	1	1585	c.1571C>A	c.(1570-1572)CCA>CAA	p.P524Q		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	524										ovary(3)	3						CATCTCCGCCCAGAGCCTCCC	0.607													43	113					1.57945e-13	1.6094e-13	1	1	0
FAM47C	442444	broad.mit.edu	37	X	37029438	37029438	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:37029438C>T	uc004ddl.1	+	1	2969	c.2955C>T	c.(2953-2955)TTC>TTT	p.F985F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	985										ovary(3)	3						TTAAGGATTTCATTCTAAGCA	0.448													47	104					0	0	1	0	0
SRPX	8406	broad.mit.edu	37	X	38020264	38020264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:38020264C>T	uc004ddy.1	-	6	783	c.697G>A	c.(697-699)GGA>AGA	p.G233R	SRPX_uc004ddz.1_Missense_Mutation_p.G213R|SRPX_uc011mkh.1_Missense_Mutation_p.G174R|SRPX_uc011mki.1_Missense_Mutation_p.G233R	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	233	HYR.				cell adhesion	cell surface|membrane					0						TTGTGGTCTCCTTCTGGAAAG	0.418													25	51					0	0	1	0	0
BCOR	54880	broad.mit.edu	37	X	39930940	39930940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:39930940C>T	uc004den.3	-	5	3293	c.3001G>A	c.(3001-3003)GAA>AAA	p.E1001K	BCOR_uc004dep.3_Missense_Mutation_p.E1001K|BCOR_uc004deo.3_Intron|BCOR_uc004dem.3_Missense_Mutation_p.E1001K	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	1001					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						TGTAATCCTTCCATCTATGTA	0.303													10	26					0	0	1	0	0
BCOR	54880	broad.mit.edu	37	X	39932229	39932229	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:39932229G>A	uc004den.3	-	4	2662	c.2370C>T	c.(2368-2370)AAC>AAT	p.N790N	BCOR_uc004dep.3_Silent_p.N790N|BCOR_uc004deo.3_Silent_p.N790N|BCOR_uc004dem.3_Silent_p.N790N|BCOR_uc004deq.3_Silent_p.N790N	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	790					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						CTTGATTCCAGTTGGGGTTCG	0.483													84	208					0	0	1	0	0
BCOR	54880	broad.mit.edu	37	X	39933510	39933510	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:39933510C>T	uc004den.3	-	4	1381	c.1089G>A	c.(1087-1089)AGG>AGA	p.R363R	BCOR_uc004dep.3_Silent_p.R363R|BCOR_uc004deo.3_Silent_p.R363R|BCOR_uc004dem.3_Silent_p.R363R|BCOR_uc004deq.3_Silent_p.R363R	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	363					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						AGGTGGAGATCCTGGCATAGT	0.607													13	33					0	0	1	0	0
GPR34	2857	broad.mit.edu	37	X	41555682	41555682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:41555682C>T	uc004dfp.3	+	3	1080	c.796C>T	c.(796-798)CGT>TGT	p.R266C	CASK_uc004dfl.3_Intron|CASK_uc004dfm.3_Intron|CASK_uc004dfn.3_Intron|GPR34_uc004dfq.3_Missense_Mutation_p.R266C|GPR34_uc010nhg.2_Missense_Mutation_p.R266C|GPR34_uc004dfr.3_Missense_Mutation_p.R266C	NM_001097579	NP_001091048	Q9UPC5	GPR34_HUMAN	G protein-coupled receptor 34	266	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						CACTACAGCTCGTAACTCCTT	0.313													7	19					0	0	1	0	0
CXorf36	79742	broad.mit.edu	37	X	45011047	45011047	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:45011047G>A	uc004dgg.2	-	5	1227	c.1152C>T	c.(1150-1152)TCC>TCT	p.S384S		NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	384						extracellular region				lung(1)	1						GAACAAGGATGGAGTCTATGT	0.587													20	41					0	0	1	0	0
PHF16	9767	broad.mit.edu	37	X	46915589	46915589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:46915589G>A	uc004dgx.2	+	10	1600	c.1549G>A	c.(1549-1551)GAA>AAA	p.E517K	PHF16_uc004dgy.2_Missense_Mutation_p.E517K	NM_001077445	NP_001070913	Q92613	JADE3_HUMAN	PHD finger protein 16	517					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0						TCTTAACCAAGAAATTGATGC	0.358													9	17					0	0	1	0	0
ZNF182	7569	broad.mit.edu	37	X	47842375	47842375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:47842375C>T	uc004dir.2	-	6	609	c.263G>A	c.(262-264)GGA>GAA	p.G88E	ZNF182_uc004dis.2_Missense_Mutation_p.G69E|ZNF182_uc004dit.2_Missense_Mutation_p.G88E|ZNF182_uc011mlu.1_Missense_Mutation_p.G69E	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	88	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TGGGATTTTTCCTTCTGCCGG	0.483													17	45					0	0	1	0	0
WAS	7454	broad.mit.edu	37	X	48546827	48546827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:48546827G>A	uc004dkm.3	+	9	973	c.916G>A	c.(916-918)GAG>AAG	p.E306K		NM_000377	NP_000368	P42768	WASP_HUMAN	Wiskott-Aldrich syndrome protein	306					blood coagulation|defense response|epidermis development|immune response|T cell receptor signaling pathway	actin cytoskeleton|cytosol	identical protein binding|small GTPase regulator activity			ovary(1)	1		all_lung(315;1.27e-10)				TGTGCGGCAGGAGATGAGGCG	0.577			Mis|N|F|S			lymphoma			Wiskott-Aldrich_syndrome				11	23					0	0	1	0	0
KCND1	3750	broad.mit.edu	37	X	48819939	48819939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:48819939G>A	uc004dlx.1	-	6	3420	c.1847C>T	c.(1846-1848)TCC>TTC	p.S616F	KCND1_uc004dlw.1_Missense_Mutation_p.S239F	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	616	Cytoplasmic (Potential).					voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						GCCGCCAGGGGAGGAAGGTTG	0.632													8	18					0	0	1	0	0
CACNA1F	778	broad.mit.edu	37	X	49072916	49072916	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:49072916A>C	uc004dnb.2	-	27	3257	c.3195T>G	c.(3193-3195)AGT>AGG	p.S1065R	CACNA1F_uc010nip.2_Missense_Mutation_p.S1054R	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1065	Dihydropyridine binding (By similarity).|III.|Extracellular (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	AGTTGAAATCACTGTTGACCC	0.567													12	26					0	0	1	0	0
CLCN5	1184	broad.mit.edu	37	X	49855482	49855482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:49855482G>A	uc004dos.1	+	11	2337	c.2089G>A	c.(2089-2091)GAG>AAG	p.E697K	CLCN5_uc004dor.1_Missense_Mutation_p.E767K|CLCN5_uc004doq.1_Missense_Mutation_p.E767K|CLCN5_uc004dot.1_Missense_Mutation_p.E697K	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	697	CBS 2.|Cytoplasmic (By similarity).				excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					TACACCCATGGAGATCGTAGT	0.502													16	43					0	0	1	0	0
AKAP4	8852	broad.mit.edu	37	X	49957175	49957175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:49957175G>A	uc004dow.1	-	5	2313	c.2189C>T	c.(2188-2190)TCG>TTG	p.S730L	AKAP4_uc004dov.1_Missense_Mutation_p.S347L|AKAP4_uc010njp.1_Missense_Mutation_p.S552L|AKAP4_uc004dou.1_Missense_Mutation_p.S721L	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	730					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					CTTATTTGCCGAGGCTGCTTG	0.443													15	28					0	0	1	0	0
CCNB3	85417	broad.mit.edu	37	X	50094243	50094243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:50094243C>T	uc004dox.3	+	12	4262	c.3964C>T	c.(3964-3966)CCC>TCC	p.P1322S	CCNB3_uc004doy.2_Missense_Mutation_p.P1322S|CCNB3_uc004doz.2_Missense_Mutation_p.P218S|CCNB3_uc010njq.2_Missense_Mutation_p.P214S|CCNB3_uc004dpa.2_Missense_Mutation_p.P161S	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1322					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					CTTCCAGGTTCCCTTCCTGGA	0.458													36	93					0	0	1	0	0
SHROOM4	57477	broad.mit.edu	37	X	50345782	50345782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:50345782C>T	uc004dpe.2	-	7	3819	c.3793G>A	c.(3793-3795)GGG>AGG	p.G1265R	SHROOM4_uc004dpd.3_RNA	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	1265	ASD2.				actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					CCTGGGGCCCCTGAAGGAGGC	0.463													25	37					0	0	1	0	0
SHROOM4	57477	broad.mit.edu	37	X	50438892	50438892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:50438892C>T	uc004dpe.2	-	2	189	c.163G>A	c.(163-165)GGT>AGT	p.G55S	SHROOM4_uc004dpd.3_RNA	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	55	PDZ.				actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					AGCTCATCACCAGTCCTCATC	0.478													14	40					0	0	1	0	0
BMP15	9210	broad.mit.edu	37	X	50659177	50659177	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:50659177C>A	uc011mnw.1	+	2	749	c.749C>A	c.(748-750)CCC>CAC	p.P250H		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	250					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					AAATTTCTTCCCAGGGGCATG	0.463													23	48					3.28513e-13	3.34254e-13	1	1	0
GSPT2	23708	broad.mit.edu	37	X	51488235	51488235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:51488235C>T	uc004dpl.2	+	1	1739	c.1513C>T	c.(1513-1515)CCA>TCA	p.P505S		NM_018094	NP_060564	Q8IYD1	ERF3B_HUMAN	peptide chain release factor 3	505					cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|translational termination	cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1	Ovarian(276;0.236)					AGAGATTCTTCCAGGATTCAT	0.408													9	42					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53564554	53564554	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:53564554G>A	uc004dsp.2	-	78	12502	c.12100C>T	c.(12100-12102)CTG>TTG	p.L4034L	HUWE1_uc004dsn.2_Silent_p.L2842L|HUWE1_uc004dsq.1_Silent_p.L334L	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	4034					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TTGCGATGCAGCTCACGATAG	0.547													6	34					0	0	1	0	0
FAM120C	54954	broad.mit.edu	37	X	54209044	54209044	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:54209044C>T	uc004dsz.3	-	1	671	c.588G>A	c.(586-588)CTG>CTA	p.L196L	FAM120C_uc011moh.1_Silent_p.L196L|FAM120C_uc004dta.2_Silent_p.L196L	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	196										ovary(1)|central_nervous_system(1)	2						GTCCCACGATCAGTTGCGCTG	0.706													8	19					0	0	1	0	0
FAM123B	139285	broad.mit.edu	37	X	63412488	63412488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:63412488C>T	uc004dvo.2	-	2	952	c.679G>A	c.(679-681)GAA>AAA	p.E227K		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	227					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						TTAGCATTTTCCTTTCTAGGG	0.552													36	78					0	0	1	0	0
LAS1L	81887	broad.mit.edu	37	X	64738224	64738224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:64738224G>A	uc004dwa.1	-	12	1642	c.1570C>T	c.(1570-1572)CCC>TCC	p.P524S	LAS1L_uc004dwc.1_Missense_Mutation_p.P507S|LAS1L_uc004dwd.1_Missense_Mutation_p.P465S|LAS1L_uc004dvy.1_Missense_Mutation_p.P37S|LAS1L_uc004dvz.1_Missense_Mutation_p.P37S	NM_031206	NP_112483	Q9Y4W2	LAS1L_HUMAN	LAS1-like	524						MLL1 complex|nucleolus	protein binding			ovary(3)|large_intestine(1)	4						TTCCCAATGGGGGAGGCCTCA	0.577													47	86					0	0	1	0	0
MSN	4478	broad.mit.edu	37	X	64959738	64959738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:64959738G>A	uc004dwf.2	+	13	1915	c.1717G>A	c.(1717-1719)GAA>AAA	p.E573K		NM_002444	NP_002435	P26038	MOES_HUMAN	moesin	573					leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking	apical plasma membrane|cytoskeleton|extrinsic to membrane|microvillus membrane|nucleolus	cell adhesion molecule binding|receptor binding|structural constituent of cytoskeleton		MSN/ALK(6)	haematopoietic_and_lymphoid_tissue(6)|ovary(3)|lung(1)	10						GCGCATTGACGAATTTGAGTC	0.532			T	ALK	ALCL								31	73					0	0	1	0	0
HEPH	9843	broad.mit.edu	37	X	65478819	65478819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:65478819C>T	uc011moz.1	+	18	3103	c.3043C>T	c.(3043-3045)CGG>TGG	p.R1015W	HEPH_uc004dwn.2_Missense_Mutation_p.R1015W|HEPH_uc004dwo.2_Missense_Mutation_p.R745W|HEPH_uc010nkr.2_Missense_Mutation_p.R823W|HEPH_uc011mpa.1_Missense_Mutation_p.R1015W	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	1012	Extracellular (Potential).|Plastocyanin-like 6.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CTTCCTCTATCGGGTGAGCTG	0.468													9	25					0	0	1	0	0
HEPH	9843	broad.mit.edu	37	X	65486281	65486281	+	Splice_Site	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:65486281G>A	uc011moz.1	+	21	3314	c.3254_splice	c.e21-1	p.A1085_splice	HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Splice_Site_p.A815_splice|HEPH_uc010nkr.2_Splice_Site_p.A893_splice|HEPH_uc011mpa.1_Splice_Site_p.A1085_splice	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a						cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CTCCATTTCAGCAGTGCCCCC	0.433													21	38					0	0	1	0	0
IGBP1	3476	broad.mit.edu	37	X	69354582	69354582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:69354582C>T	uc004dxv.2	+	2	897	c.398C>T	c.(397-399)TCT>TTT	p.S133F	IGBP1_uc004dxw.2_Missense_Mutation_p.S133F	NM_001551	NP_001542	P78318	IGBP1_HUMAN	immunoglobulin binding protein 1	133					B cell activation|negative regulation of caspase activity|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|regulation of microtubule-based movement|response to interleukin-1|response to tumor necrosis factor|signal transduction	cytoplasm	protein phosphatase type 2A regulator activity			kidney(1)|pancreas(1)	2						ATGAACAACTCTGCTGAAAAT	0.443													28	51					0	0	1	0	0
DGAT2L6	347516	broad.mit.edu	37	X	69420265	69420265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:69420265G>A	uc004dxx.1	+	4	525	c.428G>A	c.(427-429)AGG>AAG	p.R143K		NM_198512	NP_940914	Q6ZPD8	DG2L6_HUMAN	diacylglycerol O-acyltransferase 2-like 6	143					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)	1						ACCTTAGAAAGGATATTTTGG	0.413													10	40					0	0	1	0	0
OGT	8473	broad.mit.edu	37	X	70787443	70787443	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:70787443C>T	uc004eaa.1	+	20	2900	c.2683C>T	c.(2683-2685)CTG>TTG	p.L895L	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Silent_p.L885L|OGT_uc004eac.2_Silent_p.L756L|OGT_uc004ead.2_Silent_p.L514L	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	895					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					AAACATGGGCCTGCCCCAGAA	0.468													16	45					0	0	1	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433613	72433613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:72433613C>T	uc004ebi.2	-	1	1072	c.716G>A	c.(715-717)GGA>GAA	p.G239E	NAP1L2_uc011mqj.1_Missense_Mutation_p.G97E	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	239					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					ATCAGGAATTCCCTTAGGATC	0.303													15	43					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73048905	73048905	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:73048905C>T	uc004ebn.2	+	1		c.36866C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CAACTTACTTCATTCAGCTAT	0.453													9	47					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960458	73960458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:73960458C>T	uc004eby.2	-	3	4551	c.3934G>A	c.(3934-3936)GAA>AAA	p.E1312K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1312					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TCCTGAAATTCCCGTTGGTCA	0.522													41	76					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960926	73960926	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:73960926G>A	uc004eby.2	-	3	4083	c.3466C>T	c.(3466-3468)CTG>TTG	p.L1156L		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1156					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AATGTTGACAGGCAAGGGTTT	0.393													25	75					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961993	73961993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:73961993G>A	uc004eby.2	-	3	3016	c.2399C>T	c.(2398-2400)TCT>TTT	p.S800F		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	800					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AACATTAGCAGATGATAAAGG	0.403													40	117					0	0	1	0	0
UPRT	139596	broad.mit.edu	37	X	74520769	74520769	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:74520769C>T	uc004ecb.1	+	6	921	c.792C>T	c.(790-792)ATC>ATT	p.I264I	UPRT_uc004ecc.1_RNA|UPRT_uc004ecd.1_Silent_p.I264I|UPRT_uc004ece.1_Silent_p.I128I	NM_145052	NP_659489	Q96BW1	UPP_HUMAN	uracil phosphoribosyltransferase (FUR1) homolog	264					nucleoside metabolic process	cytoplasm|nucleus					0						CCAGTGTTATCATCCTACTCA	0.408													22	47					0	0	1	0	0
MAGEE1	57692	broad.mit.edu	37	X	75648791	75648791	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:75648791C>T	uc004ecm.1	+	1	675	c.468C>T	c.(466-468)GCC>GCT	p.A156A		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	156	Pro-rich.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						CGCCCACCGCCTCTGAGGTAC	0.687													19	46					0	0	1	0	0
FGF16	8823	broad.mit.edu	37	X	76711906	76711906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:76711906G>A	uc011mqp.1	+	2	517	c.244G>A	c.(244-246)GAG>AAG	p.E82K		NM_003868	NP_003859	O43320	FGF16_HUMAN	fibroblast growth factor 16	173					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|metabolic process|organ morphogenesis|response to temperature stimulus	extracellular space	growth factor activity			lung(1)	1						CTCACCCCGGGAGGGATACAG	0.473													26	55					0	0	1	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77912666	77912666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:77912666C>T	uc004edc.1	-	2	1548	c.1252G>A	c.(1252-1254)GAA>AAA	p.E418K		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	418							nucleic acid binding|zinc ion binding			ovary(1)	1						GGTTGGTTTTCAGCTGGTGGA	0.522													30	63					0	0	1	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913741	77913741	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:77913741C>T	uc004edc.1	-	2	473	c.177G>A	c.(175-177)AAG>AAA	p.K59K		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	59							nucleic acid binding|zinc ion binding			ovary(1)	1						TCTGGGGCTCCTTGGCCTCTG	0.572													15	30					0	0	1	0	0
BRWD3	254065	broad.mit.edu	37	X	79942376	79942376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:79942376G>A	uc004edt.2	-	35	4254	c.3991C>T	c.(3991-3993)CTT>TTT	p.L1331F	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.L927F|BRWD3_uc004edp.2_Missense_Mutation_p.L1160F|BRWD3_uc004edq.2_Missense_Mutation_p.L927F|BRWD3_uc010nmj.1_Missense_Mutation_p.L927F|BRWD3_uc004edr.2_Missense_Mutation_p.L1001F|BRWD3_uc004eds.2_Missense_Mutation_p.L927F|BRWD3_uc004edu.2_Missense_Mutation_p.L1001F|BRWD3_uc004edv.2_Missense_Mutation_p.L927F|BRWD3_uc004edw.2_Missense_Mutation_p.L927F|BRWD3_uc004edx.2_Missense_Mutation_p.L927F|BRWD3_uc004edy.2_Missense_Mutation_p.L927F|BRWD3_uc004edz.2_Missense_Mutation_p.L1001F|BRWD3_uc004eea.2_Missense_Mutation_p.L1001F|BRWD3_uc004eeb.2_Missense_Mutation_p.L927F	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1331	Bromo 2.									ovary(4)	4						TAAGAAAGAAGATCAGCTGGC	0.358													16	44					0	0	1	0	0
BRWD3	254065	broad.mit.edu	37	X	79943581	79943581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:79943581G>A	uc004edt.2	-	34	4114	c.3851C>T	c.(3850-3852)TCA>TTA	p.S1284L	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.S880L|BRWD3_uc004edp.2_Missense_Mutation_p.S1113L|BRWD3_uc004edq.2_Missense_Mutation_p.S880L|BRWD3_uc010nmj.1_Missense_Mutation_p.S880L|BRWD3_uc004edr.2_Missense_Mutation_p.S954L|BRWD3_uc004eds.2_Missense_Mutation_p.S880L|BRWD3_uc004edu.2_Missense_Mutation_p.S954L|BRWD3_uc004edv.2_Missense_Mutation_p.S880L|BRWD3_uc004edw.2_Missense_Mutation_p.S880L|BRWD3_uc004edx.2_Missense_Mutation_p.S880L|BRWD3_uc004edy.2_Missense_Mutation_p.S880L|BRWD3_uc004edz.2_Missense_Mutation_p.S954L|BRWD3_uc004eea.2_Missense_Mutation_p.S954L|BRWD3_uc004eeb.2_Missense_Mutation_p.S880L	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1284										ovary(4)	4						TCTTCCAGATGAAGTACCAGG	0.279													42	66					0	0	1	0	0
BRWD3	254065	broad.mit.edu	37	X	79964984	79964984	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:79964984A>T	uc004edt.2	-	21	2681	c.2418T>A	c.(2416-2418)AAT>AAA	p.N806K	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.N402K|BRWD3_uc004edp.2_Missense_Mutation_p.N635K|BRWD3_uc004edq.2_Missense_Mutation_p.N402K|BRWD3_uc010nmj.1_Missense_Mutation_p.N402K|BRWD3_uc004edr.2_Missense_Mutation_p.N476K|BRWD3_uc004eds.2_Missense_Mutation_p.N402K|BRWD3_uc004edu.2_Missense_Mutation_p.N476K|BRWD3_uc004edv.2_Missense_Mutation_p.N402K|BRWD3_uc004edw.2_Missense_Mutation_p.N402K|BRWD3_uc004edx.2_Missense_Mutation_p.N402K|BRWD3_uc004edy.2_Missense_Mutation_p.N402K|BRWD3_uc004edz.2_Missense_Mutation_p.N476K|BRWD3_uc004eea.2_Missense_Mutation_p.N476K|BRWD3_uc004eeb.2_Missense_Mutation_p.N402K	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	806										ovary(4)	4						ATGCCTGTGAATTATGCTCTA	0.383													15	30					0	0	1	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83372093	83372093	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:83372093G>A	uc004eej.1	-	11	1001	c.924C>T	c.(922-924)TTC>TTT	p.F308F	RPS6KA6_uc011mqt.1_Silent_p.F308F|RPS6KA6_uc011mqu.1_Silent_p.F205F	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	308	Protein kinase 1.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						GATTCCTTTTGAATAACATCC	0.313													10	37					0	0	1	0	0
HDX	139324	broad.mit.edu	37	X	83591836	83591836	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:83591836G>A	uc004eek.1	-	7	1822	c.1713C>T	c.(1711-1713)GAC>GAT	p.D571D	HDX_uc011mqv.1_Silent_p.D571D|HDX_uc004eel.1_Silent_p.D513D	NM_144657	NP_653258	Q7Z353	HDX_HUMAN	highly divergent homeobox	571						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CTGCATGGTGGTCCTCTTCCT	0.368													9	22					0	0	1	0	0
MIR361	494323	broad.mit.edu	37	X	85158695	85158695	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:85158695G>A	hsa-mir-361|MI0000760	-			c.18G>A			CHM_uc004eet.2_Intron|CHM_uc011mqz.1_Intron																	0						agtacccctggagattctgat	0.308													20	40					0	0	1	0	0
FAM133A	286499	broad.mit.edu	37	X	92965002	92965002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:92965002C>T	uc004efr.1	+	4	897	c.584C>T	c.(583-585)TCA>TTA	p.S195L		NM_173698	NP_775969	Q8N9E0	F133A_HUMAN	hypothetical protein LOC286499	195	Ser-rich.|Lys-rich.										0						TCTGAGTCCTCATCTGAATCA	0.333													4	11					0	0	1	0	0
LOC643486	643486	broad.mit.edu	37	X	95592237	95592237	+	RNA	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:95592237C>T	uc010nmx.2	-	1		c.665G>A				NR_003539				Homo sapiens cDNA FLJ42288 fis, clone TLIVE2006236.												0						GAGTTTTAATCAAAGTTGTTT	0.338													5	7					0	0	1	0	0
DIAPH2	1730	broad.mit.edu	37	X	96192235	96192235	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:96192235C>T	uc004efu.3	+	11	1489	c.1093C>T	c.(1093-1095)CTA>TTA	p.L365L	DIAPH2_uc004eft.3_Silent_p.L365L|DIAPH2_uc004efs.2_Silent_p.L372L	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	365	GBD/FH3.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						ATATTAGGATCTAAAAGAAAA	0.289													3	15					0	0	1	0	0
CSTF2	1478	broad.mit.edu	37	X	100088234	100088234	+	Silent	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:100088234T>C	uc004egh.2	+	11	1331	c.1273T>C	c.(1273-1275)TTA>CTA	p.L425L	CSTF2_uc010nnd.2_Silent_p.L445L|CSTF2_uc004egi.2_Silent_p.L408L	NM_001325	NP_001316	P33240	CSTF2_HUMAN	cleavage stimulation factor subunit 2	425	12 X 5 AA tandem repeats of M-E-A-R-[AG].|4; approximate.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cleavage body|mRNA cleavage and polyadenylation specificity factor complex	nucleotide binding|protein binding|protein binding|RNA binding			skin(1)	1						GGCAAGAGGGTTAGATGCCAG	0.557													8	15					0	0	1	0	0
NXF4	55999	broad.mit.edu	37	X	101818027	101818027	+	RNA	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:101818027G>A	uc004ejf.1	+	6		c.724G>A				NR_002216				Homo sapiens cDNA FLJ42710 fis, clone BRAMY3007609, moderately similar to Homo sapiens nuclear RNA export factor 2 (NXF2).												0						CATAGCTAAAGGTAATACAGA	0.458													15	23					0	0	1	0	0
NXF3	56000	broad.mit.edu	37	X	102334948	102334948	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:102334948G>A	uc004eju.2	-	12	1116	c.1045C>T	c.(1045-1047)CTG>TTG	p.L349L	NXF3_uc010noi.1_Silent_p.L199L	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	349	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TACTGCTGCAGGAATTGCAGG	0.483													69	171					0	0	1	0	0
NXF3	56000	broad.mit.edu	37	X	102338549	102338549	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:102338549G>A	uc004eju.2	-	4	494	c.423C>T	c.(421-423)TTC>TTT	p.F141F	NXF3_uc010noi.1_5'UTR|NXF3_uc011mrw.1_Silent_p.F141F|NXF3_uc011mrx.1_Silent_p.F52F	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	141	RRM.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						CAACTGGGACGAAGGGTACAC	0.458													42	88					0	0	1	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106066667	106066667	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:106066667C>T	uc004emo.2	+	5	963	c.798C>T	c.(796-798)GTC>GTT	p.V266V	MORC4_uc004emp.3_Intron|TBC1D8B_uc004emm.2_Silent_p.V266V|TBC1D8B_uc004emn.2_Silent_p.V266V	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	266						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						ATGACCCAGTCCTTTATAATC	0.323													31	71					0	0	1	0	0
VSIG1	340547	broad.mit.edu	37	X	107310287	107310287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:107310287G>A	uc004eno.2	+	3	496	c.335G>A	c.(334-336)GGA>GAA	p.G112E	VSIG1_uc011msk.1_Missense_Mutation_p.G148E	NM_182607	NP_872413	Q86XK7	VSIG1_HUMAN	V-set and immunoglobulin domain containing 1	112	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GCAGACAGTGGAATTTACATC	0.458													52	122					0	0	1	0	0
COL4A6	1288	broad.mit.edu	37	X	107464577	107464577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:107464577C>T	uc004enw.3	-	4	278	c.175G>A	c.(175-177)GGC>AGC	p.G59S	COL4A6_uc004env.3_Missense_Mutation_p.G58S|COL4A6_uc011msn.1_Missense_Mutation_p.G58S|COL4A6_uc010npk.2_Missense_Mutation_p.G58S	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	59	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CCTGTTGGGCCTTGAATTCCA	0.478									Alport_syndrome_with_Diffuse_Leiomyomatosis				24	79					0	0	1	0	0
GUCY2F	2986	broad.mit.edu	37	X	108647677	108647677	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:108647677C>A	uc004eod.3	-	10	2281	c.2005G>T	c.(2005-2007)GGG>TGG	p.G669W	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	669	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TTTAGCCTCCCATGAACAAAC	0.388													31	87					2.80507e-11	2.8458e-11	1	1	0
GUCY2F	2986	broad.mit.edu	37	X	108696842	108696842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:108696842C>T	uc004eod.3	-	4	1555	c.1279G>A	c.(1279-1281)GAA>AAA	p.E427K	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	427	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						AGCTCCATTTCCATGTCCACA	0.478													31	57					0	0	1	0	0
ACSL4	2182	broad.mit.edu	37	X	108926538	108926538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:108926538G>A	uc004eoi.2	-	4	683	c.178C>T	c.(178-180)CGC>TGC	p.R60C	ACSL4_uc004eoj.2_Missense_Mutation_p.R19C|ACSL4_uc004eok.2_Missense_Mutation_p.R19C|ACSL4_uc010npp.1_Missense_Mutation_p.R60C	NM_022977	NP_075266	O60488	ACSL4_HUMAN	acyl-CoA synthetase long-chain family member 4	60	Cytoplasmic (Potential).				fatty acid metabolic process|learning or memory|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(1)|lung(1)|ovary(1)	3					Icosapent(DB00159)|Troglitazone(DB00197)	GTGACAGAGCGATATGGACTT	0.403													84	181					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109693857	109693857	+	Silent	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:109693857C>A	uc004eor.1	+	3	258	c.12C>A	c.(10-12)CCC>CCA	p.P4P	RGAG1_uc011msr.1_Silent_p.P4P	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	4										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TGTCAATACCCTTACATTCAC	0.458											OREG0019909	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	227					1	1	1	1	0
DCX	1641	broad.mit.edu	37	X	110644401	110644401	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:110644401C>T	uc004epd.2	-	3	937	c.765G>A	c.(763-765)AAG>AAA	p.K255K	DCX_uc011msv.1_Silent_p.K255K|DCX_uc004epe.2_Silent_p.K174K|DCX_uc004epf.2_Silent_p.K174K|DCX_uc004epg.2_Silent_p.K174K	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	255					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						GCACAAAGTCCTTGTTCTCCC	0.532													17	55					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117079528	117079528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:117079528C>T	uc004eql.2	-	2	171	c.109G>A	c.(109-111)GAA>AAA	p.E37K	KLHL13_uc004eqk.2_5'UTR|KLHL13_uc011mtn.1_5'UTR|KLHL13_uc011mto.1_Missense_Mutation_p.E31K|KLHL13_uc011mtp.1_Missense_Mutation_p.E39K|KLHL13_uc004eqm.2_5'UTR|KLHL13_uc011mtq.1_Missense_Mutation_p.E21K	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	37					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TCTTCCTCTTCCACGAGAGAT	0.388													7	31					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118223410	118223410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:118223410C>T	uc004era.3	-	11	1783	c.1783G>A	c.(1783-1785)GAG>AAG	p.E595K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	595										ovary(4)|skin(1)	5						GTAGGCTGCTCCATGTTGTCC	0.493													22	59					0	0	1	0	0
CXorf56	63932	broad.mit.edu	37	X	118676491	118676491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:118676491C>T	uc004erk.1	-	5	536	c.490G>A	c.(490-492)GAA>AAA	p.E164K	CXorf56_uc004erj.1_Missense_Mutation_p.E115K|CXorf56_uc011mtu.1_Missense_Mutation_p.E150K	NM_022101	NP_071384	Q9H5V9	CX056_HUMAN	hypothetical protein LOC63932	164							protein binding				0						TCTTCCTCTTCATCAATGGTA	0.507													26	73					0	0	1	0	0
RHOXF1	158800	broad.mit.edu	37	X	119246802	119246802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:119246802C>T	uc004esk.1	-	2	496	c.421G>A	c.(421-423)GGT>AGT	p.G141S	uc004esi.1_Intron	NM_139282	NP_644811	Q8NHV9	RHXF1_HUMAN	Rhox homeobox family, member 1	141	Homeobox.				gamete generation|multicellular organismal development|steroid hormone receptor signaling pathway	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TCAGTCACACCTAAGTTTTCG	0.403													54	149					0	0	1	0	0
FAM70A	55026	broad.mit.edu	37	X	119419545	119419545	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:119419545T>C	uc004eso.3	-	6	657	c.430A>G	c.(430-432)AGT>GGT	p.S144G	FAM70A_uc004esp.3_Intron|FAM70A_uc010nqo.2_Intron	NM_017938	NP_060408	Q5JRV8	FA70A_HUMAN	hypothetical protein LOC55026 isoform 1	144						integral to membrane				lung(1)|breast(1)	2						GTTGAGGAACTTATGACCTTA	0.433													25	49					0	0	1	0	0
ATP1B4	23439	broad.mit.edu	37	X	119500515	119500515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:119500515G>A	uc004esr.2	+	2	283	c.199G>A	c.(199-201)GAA>AAA	p.E67K	ATP1B4_uc004esq.2_Missense_Mutation_p.E67K|ATP1B4_uc011mtx.1_Missense_Mutation_p.E67K|ATP1B4_uc011mty.1_Missense_Mutation_p.E67K	NM_001142447	NP_001135919	Q9UN42	AT1B4_HUMAN	ATPase, (Na+)/K+ transporting, beta 4	67	Glu-rich.|Nuclear (Potential).				ATP biosynthetic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to plasma membrane|nuclear inner membrane	sodium:potassium-exchanging ATPase activity			ovary(1)|skin(1)	2						ggaagaggaggaaaaggagga	0.353													13	35					0	0	1	0	0
CT47B1	643311	broad.mit.edu	37	X	120009248	120009248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:120009248C>T	uc011muc.1	-	1	532	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	93	Poly-Glu.										0						tcctcctcttcctccGTCGCG	0.592													15	34					0	0	1	0	0
GLUD2	2747	broad.mit.edu	37	X	120181778	120181778	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:120181778C>T	uc004eto.2	+	1	317	c.240C>T	c.(238-240)ATC>ATT	p.I80I		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	80					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	GCGCCAGCATCGTGGAGGACA	0.642													32	64					0	0	1	0	0
GLUD2	2747	broad.mit.edu	37	X	120182569	120182569	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:120182569A>G	uc004eto.2	+	1	1108	c.1031A>G	c.(1030-1032)GAC>GGC	p.D344G		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	344					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	GATGGTATTGACCCAAAGGAA	0.453													65	125					0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122459949	122459949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:122459949G>A	uc004etq.3	+	5	874	c.581G>A	c.(580-582)GGA>GAA	p.G194E	GRIA3_uc004etr.3_Missense_Mutation_p.G194E|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.G178E	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	194	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	AGGTCTGTGGGAAACATAAAG	0.443													13	33					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123587292	123587292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:123587292C>T	uc004euj.2	-	22	4042	c.3978G>A	c.(3976-3978)ATG>ATA	p.M1326I	ODZ1_uc011muj.1_Missense_Mutation_p.M1332I|ODZ1_uc010nqy.2_Missense_Mutation_p.M1333I	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1326	NHL 2.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TTTTGCGAATCATAGTCCCAT	0.423													29	51					0	0	1	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125298602	125298602	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:125298602A>G	uc004euk.1	-	1	1333	c.1306T>C	c.(1306-1308)TAC>CAC	p.Y436H		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	436										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						GGCCAGTTGTAGCAGTGGGTG	0.587													37	121					0	0	1	0	0
SMARCA1	6594	broad.mit.edu	37	X	128614696	128614696	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:128614696C>T	uc004eun.3	-	19	2537	c.2424G>A	c.(2422-2424)CGG>CGA	p.R808R	SMARCA1_uc004eup.3_Silent_p.R796R|SMARCA1_uc011muk.1_Silent_p.R808R|SMARCA1_uc011mul.1_Silent_p.R796R	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	808					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						CTATTGTCTTCCGATAATAAA	0.313													14	18					0	0	1	0	0
ELF4	2000	broad.mit.edu	37	X	129203628	129203628	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:129203628C>T	uc004evd.3	-	8	1219	c.834G>A	c.(832-834)CTG>CTA	p.L278L	ELF4_uc004eve.3_Silent_p.L278L	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4	278	ETS.				natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCACTTTGGCCAGTATGCCTC	0.557			T	ERG	AML								28	101					0	0	1	0	0
ENOX2	10495	broad.mit.edu	37	X	129804108	129804108	+	Silent	SNP	G	A	A	rs140378068		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:129804108G>A	uc004evw.2	-	8	1030	c.612C>T	c.(610-612)TTC>TTT	p.F204F	ENOX2_uc004evx.2_Silent_p.F175F|ENOX2_uc004evy.2_Silent_p.F175F|ENOX2_uc004evv.2_Silent_p.F31F	NM_182314	NP_872114	Q16206	ENOX2_HUMAN	ecto-NOX disulfide-thiol exchanger 2 isoform b	204	RRM.				cell growth|electron transport chain|regulation of growth|transport|ultradian rhythm	cytosol|external side of plasma membrane|extracellular space	nucleic acid binding|nucleotide binding|protein disulfide oxidoreductase activity			ovary(1)	1						GAGCCTGTGCGAAATCAACGT	0.473													21	29					0	0	1	0	0
FRMD7	90167	broad.mit.edu	37	X	131216439	131216439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:131216439G>A	uc004ewn.2	-	9	1035	c.857C>T	c.(856-858)TCA>TTA	p.S286L	FRMD7_uc011muy.1_Missense_Mutation_p.S271L	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	286					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TTTGGGCTTTGATTTGGGCTC	0.468													133	295					0	0	1	0	0
SLC9A6	10479	broad.mit.edu	37	X	135080653	135080653	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:135080653C>T	uc004ezj.2	+	4	596	c.520C>T	c.(520-522)CGA>TGA	p.R174*	SLC9A6_uc004ezk.2_Nonsense_Mutation_p.R206*|SLC9A6_uc011mvx.1_Nonsense_Mutation_p.R154*	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	174					regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					ACATTTTTTTCGAAATCTTGG	0.313													19	40					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135390975	135390975	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:135390975G>A	uc004ezu.1	+	4	330	c.39G>A	c.(37-39)TTG>TTA	p.L13L	GPR112_uc010nsb.1_Silent_p.L13L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	13					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TTTATGGATTGATTCTCATGT	0.294													33	84					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135427097	135427097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:135427097C>T	uc004ezu.1	+	6	1523	c.1232C>T	c.(1231-1233)TCT>TTT	p.S411F	GPR112_uc010nsb.1_Missense_Mutation_p.S206F|GPR112_uc010nsc.1_Missense_Mutation_p.S178F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	411	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GAGTCAACATCTATGTCTACA	0.403													40	90					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135428072	135428072	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:135428072T>A	uc004ezu.1	+	6	2498	c.2207T>A	c.(2206-2208)TTT>TAT	p.F736Y	GPR112_uc010nsb.1_Missense_Mutation_p.F531Y|GPR112_uc010nsc.1_Missense_Mutation_p.F503Y	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	736	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCACCATGGTTTGCTAATTTC	0.393													24	56					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135429448	135429448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:135429448G>A	uc004ezu.1	+	6	3874	c.3583G>A	c.(3583-3585)GGA>AGA	p.G1195R	GPR112_uc010nsb.1_Missense_Mutation_p.G990R|GPR112_uc010nsc.1_Missense_Mutation_p.G962R	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1195	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CAGTGGTGGTGGAGTTGTTGC	0.463													50	124					0	0	1	0	0
SOX3	6658	broad.mit.edu	37	X	139586695	139586695	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:139586695C>T	uc004fbd.1	-	1	531	c.531G>A	c.(529-531)TGG>TGA	p.W177*		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	177	HMG box.				face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					TCAGCAGTTTCCAGTCGGCGC	0.602													25	55					0	0	1	0	0
SPANXC	64663	broad.mit.edu	37	X	140335748	140335748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:140335748C>T	uc004fbk.2	-	2	252	c.196G>A	c.(196-198)GAA>AAA	p.E66K	SPANXC_uc004fbl.2_RNA	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X	66						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					TTCAGCAGTTCCTCTGGAGAT	0.468													88	242					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140953268	140953268	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:140953268G>A	uc011mwp.1	+	2	135	c.135G>A	c.(133-135)AAG>AAA	p.K45K		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	45										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCCGGAAAAAGGCCACAGATA	0.483													19	44					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993458	140993458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:140993458G>A	uc004fbt.2	+	4	554	c.268G>A	c.(268-270)GAC>AAC	p.D90N	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	90							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTGAGGGCGACGACACCCA	0.582										HNSCC(15;0.026)			45	121					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996502	140996503	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:140996502_140996503GG>AA	uc004fbt.2	+	4	3598_3599	c.3312_3313GG>AA	c.(3310-3315)AAGGAT>AAAAAT	p.D1105N	MAGEC1_uc010nsl.1_Missense_Mutation_p.D172N	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1105	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCTTACAAGGATGCTTTGAA	0.465										HNSCC(15;0.026)			55	122					0	0	1	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291305	141291305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:141291305C>T	uc004fbu.1	-	3	817	c.469G>A	c.(469-471)GAA>AAA	p.E157K		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	157	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCTGCTTCGTATTTGAGG	0.478										HNSCC(46;0.14)			60	151					0	0	1	0	0
MAGEA11	4110	broad.mit.edu	37	X	148797441	148797441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:148797441C>T	uc004fdq.2	+	5	397	c.295C>T	c.(295-297)CCC>TCC	p.P99S	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.P70S	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	99						cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					CCAGATATTTCCCACAGTTCG	0.527													32	82					0	0	1	0	0
MAGEA8	4107	broad.mit.edu	37	X	149013428	149013428	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:149013428C>T	uc004fdw.1	+	3	597	c.382C>T	c.(382-384)CAA>TAA	p.Q128*		NM_005364	NP_005355	P43361	MAGA8_HUMAN	melanoma antigen family A, 8	128	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					CCGCAAATATCAAATTAAGGA	0.488													31	87					0	0	1	0	0
MTM1	4534	broad.mit.edu	37	X	149839967	149839967	+	Missense_Mutation	SNP	C	T	T	rs143813478		TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:149839967C>T	uc004fef.3	+	15	1787	c.1711C>T	c.(1711-1713)CTT>TTT	p.L571F	MTM1_uc011mxx.1_RNA|MTM1_uc011mxy.1_Missense_Mutation_p.L534F|MTM1_uc011mxz.1_Missense_Mutation_p.L456F|MTM1_uc010nte.2_Missense_Mutation_p.L439F	NM_000252	NP_000243	Q13496	MTM1_HUMAN	myotubularin	571					endosome to lysosome transport|intermediate filament organization|mitochondrion distribution|mitochondrion morphogenesis|phosphatidylinositol dephosphorylation|protein transport|regulation of vacuole organization	filopodium|late endosome|plasma membrane|ruffle	intermediate filament binding|phosphatidylinositol binding|phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CATAAAGCGGCTTGAGGAACT	0.507													28	64					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150780153	150780153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:150780153G>A	uc004fev.3	+	4	467	c.135G>A	c.(133-135)ATG>ATA	p.M45I		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	45	PAS.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ATGGCTTTATGATTACACTGA	0.308													23	64					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150832597	150832597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:150832597C>T	uc004fev.3	+	11	1180	c.848C>T	c.(847-849)TCC>TTC	p.S283F		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	283						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGCCTTATCCTTGCAAGAC	0.473													19	58					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150840954	150840954	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:150840954G>A	uc004fev.3	+	14	2069	c.1737G>A	c.(1735-1737)GGG>GGA	p.G579G		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	579						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCATCGTGGGGAATGAGAGGG	0.289													20	54					0	0	1	0	0
GABRE	2564	broad.mit.edu	37	X	151138774	151138774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:151138774C>T	uc004ffi.2	-	2	211	c.157G>A	c.(157-159)GAA>AAA	p.E53K	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	53	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GACTTTGTTTCCTCAGAGAGG	0.507													63	135					0	0	1	0	0
MAGEA5	4104	broad.mit.edu	37	X	151283840	151283840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:151283840G>A	uc004ffj.2	-	3	378	c.173C>T	c.(172-174)TCA>TTA	p.S58L		NM_021049	NP_066387	P43359	MAGA5_HUMAN	melanoma antigen family A, 5	58	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGGACCTGGTGACCCAGCAGC	0.612													24	75					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303792	151303792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:151303792G>A	uc004ffk.2	-	5	709	c.301C>T	c.(301-303)CCA>TCA	p.P101S	MAGEA10_uc004ffl.2_Missense_Mutation_p.P101S	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	101											0	Acute lymphoblastic leukemia(192;6.56e-05)					TGATCTAATGGAAGGGAAGCA	0.542													73	209					0	0	1	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869895	151869895	+	Silent	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:151869895C>T	uc004ffq.1	+	3	779	c.585C>T	c.(583-585)ATC>ATT	p.I195I	MAGEA6_uc004ffr.1_Silent_p.I195I|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	195	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					ACAATCAGATCATGCCCAAGA	0.552													56	148					0	0	1	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870016	151870016	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:151870016G>C	uc004ffq.1	+	3	900	c.706G>C	c.(706-708)GAC>CAC	p.D236H	MAGEA6_uc004ffr.1_Missense_Mutation_p.D236H|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	236	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					GGGGAGGGAAGACAGTATCTT	0.532													87	217					0	0	1	0	0
ATP2B3	492	broad.mit.edu	37	X	152815137	152815137	+	Silent	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:152815137G>A	uc004fht.1	+	9	1647	c.1521G>A	c.(1519-1521)AAG>AAA	p.K507K	ATP2B3_uc004fhs.1_Silent_p.K507K	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	507	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGACCCCTAAGATCCTCGACC	0.458													25	73					0	0	1	0	0
DUSP9	1852	broad.mit.edu	37	X	152914786	152914786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:152914786C>T	uc004fhx.3	+	3	677	c.473C>T	c.(472-474)CCC>CTC	p.P158L	DUSP9_uc004fhy.3_Missense_Mutation_p.P158L	NM_001395	NP_001386	Q99956	DUS9_HUMAN	dual specificity phosphatase 9	158					inactivation of MAPK activity|JNK cascade	cytosol|endoplasmic reticulum|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGTCCAGTGCCCGTGGTGGGG	0.677													10	35					0	0	1	0	0
BCAP31	10134	broad.mit.edu	37	X	152981133	152981133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:152981133C>T	uc011myz.1	-	4	361	c.205G>A	c.(205-207)GAA>AAA	p.E69K	BCAP31_uc011myy.1_5'UTR|BCAP31_uc004fid.2_Missense_Mutation_p.E136K|BCAP31_uc011mza.1_Missense_Mutation_p.E69K|BCAP31_uc004fie.2_Missense_Mutation_p.E69K	NM_001139441	NP_001132913	P51572	BAP31_HUMAN	B-cell receptor-associated protein 31 isoform b	69	Lumenal (Potential).				cellular component disassembly involved in apoptosis|immune response|intracellular protein transport|vesicle-mediated transport	cytosol|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|integral to plasma membrane	receptor binding				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TTCCGAATTTCGCGCACGGCA	0.552													62	132					0	0	1	0	0
SSR4	6748	broad.mit.edu	37	X	153062943	153062943	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:153062943A>T	uc004fiw.2	+	3	266	c.217A>T	c.(217-219)AAA>TAA	p.K73*	IDH3G_uc004fip.2_5'Flank|IDH3G_uc004fiq.2_5'Flank|IDH3G_uc010num.2_5'Flank|IDH3G_uc004fir.2_5'Flank|IDH3G_uc004fit.1_5'Flank|IDH3G_uc004fis.2_5'Flank|SSR4_uc004fiv.2_Nonsense_Mutation_p.K84*	NM_006280	NP_006271	P51571	SSRD_HUMAN	signal sequence receptor, delta precursor	73	Lumenal (Potential).				intracellular protein transport	integral to membrane|Sec61 translocon complex	calcium ion binding|protein binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					CGTCGGTGGAAAACAATTCCC	0.612													15	55					0	0	1	0	0
FLNA	2316	broad.mit.edu	37	X	153577218	153577218	+	Nonstop_Mutation	SNP	C	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:153577218C>A	uc004fkk.2	-	48	8192	c.7943G>T	c.(7942-7944)TGA>TTA	p.*2648L	FLNA_uc004fki.2_Nonstop_Mutation_p.*688L|FLNA_uc011mzn.1_Nonstop_Mutation_p.*781L|FLNA_uc010nuu.1_Nonstop_Mutation_p.*2640L	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2648					actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCCCCAGACTCAGGGCACCAC	0.701													22	33					3.28513e-13	3.34254e-13	1	1	0
IL9R	3581	broad.mit.edu	37	X	155235098	155235098	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chrX:155235098G>A	uc004fnv.1	+	6	914	c.735G>A	c.(733-735)TGG>TGA	p.W245*	IL9R_uc010nvn.2_Nonsense_Mutation_p.W224*|IL9R_uc004fnu.1_Nonsense_Mutation_p.W280*	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	245	Extracellular (Potential).|WSXWS motif.				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAGGCCAGTGGAGTGAGTGGA	0.607													18	44					0	0	1	0	0
SORT1	6272	broad.mit.edu	37	1	109896997	109896998	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:109896997_109896998insC	uc001dxm.1	-	5	748_749	c.699_700insG	c.(697-702)CTCAGCfs	p.L233fs	SORT1_uc010ovi.1_Frame_Shift_Ins_p.L97fs|SORT1_uc009wfb.2_Frame_Shift_Ins_p.L97fs	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	233_234	Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		ACTTCAGTGCTGAGAGCTAAAA	0.371													7	290	---	---	---	---					
OR10J1	26476	broad.mit.edu	37	1	159410033	159410033	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr1:159410033delT	uc010piv.1	+	1	485	c.485delT	c.(484-486)ATTfs	p.I162fs	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	162	Helical; Name=4; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GCCTGCAGCATTGGGCTGATT	0.502													136	116	---	---	---	---					
LIMA1	51474	broad.mit.edu	37	12	50571483	50571496	+	Frame_Shift_Del	DEL	CCCTTCCTCCAAGG	-	-			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:50571483_50571496delCCCTTCCTCCAAGG	uc001rwj.3	-	11	1805_1818	c.1631_1644delCCTTGGAGGAAGGG	c.(1630-1644)GCCTTGGAGGAAGGGfs	p.A544fs	LIMA1_uc001rwg.3_Frame_Shift_Del_p.A242fs|LIMA1_uc001rwh.3_Frame_Shift_Del_p.A383fs|LIMA1_uc001rwi.3_Frame_Shift_Del_p.A385fs|LIMA1_uc001rwk.3_Frame_Shift_Del_p.A545fs|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	544_548					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						ACATTTTGATCCCTTCCTCCAAGGCACTTCCTGA	0.514													30	110	---	---	---	---					
ESYT1	23344	broad.mit.edu	37	12	56527952	56527952	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr12:56527952delC	uc001sjq.2	+	14	1582	c.1532delC	c.(1531-1533)ACTfs	p.T511fs	ESYT1_uc001sjr.2_Frame_Shift_Del_p.T521fs	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	511	C2 2.					integral to membrane				ovary(4)|skin(1)	5						CAGGATGTGACTCAGGAGAGC	0.517													9	23	---	---	---	---					
NYNRIN	57523	broad.mit.edu	37	14	24879252	24879252	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr14:24879252delC	uc001wpf.3	+	4	2570	c.2252delC	c.(2251-2253)GCCfs	p.A751fs		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	751					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TGGGAGGGGGCCCCAAGGCAG	0.637													8	28	---	---	---	---					
VPS35	55737	broad.mit.edu	37	16	46715405	46715406	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:46715405_46715406delGG	uc002eef.3	-	4	305_306	c.206_207delCC	c.(205-207)GCCfs	p.A69fs	VPS35_uc002eed.2_5'Flank|VPS35_uc002eee.2_Frame_Shift_Del_p.A30fs	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	69					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CATCAGAAATGGCCATATCTTT	0.371													7	43	---	---	---	---					
MON1B	22879	broad.mit.edu	37	16	77228727	77228733	+	Frame_Shift_Del	DEL	CTGTGTG	-	-			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr16:77228727_77228733delCTGTGTG	uc002fez.2	+	4	1301_1307	c.971_977delCTGTGTG	c.(970-978)CCTGTGTGCfs	p.P324fs	MON1B_uc010vnf.1_Frame_Shift_Del_p.P215fs|MON1B_uc010vng.1_Frame_Shift_Del_p.P178fs|MON1B_uc002ffa.2_Frame_Shift_Del_p.P204fs	NM_014940	NP_055755	Q7L1V2	MON1B_HUMAN	MON1 homolog B	324_326							protein binding				0						GCTTGGGCACCTGTGTGCCTGCCCCGC	0.638													16	55	---	---	---	---					
NT5DC2	64943	broad.mit.edu	37	3	52563336	52563337	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr3:52563336_52563337insG	uc003deo.2	-	2	559_560	c.135_136insC	c.(133-138)CCCGAGfs	p.P45fs	NT5DC2_uc003dem.2_5'Flank|NT5DC2_uc003den.2_Frame_Shift_Ins_p.P82fs|NT5DC2_uc010hmi.2_Frame_Shift_Ins_p.P82fs|NT5DC2_uc010hmj.2_5'UTR	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	45_46							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		CTGCAGACCTCGGGGGGCAGGA	0.594													8	16	---	---	---	---					
MAS1	4142	broad.mit.edu	37	6	160328707	160328731	+	Frame_Shift_Del	DEL	CGCTATGCCCATGAGACTCCTTTAC	-	-	rs142248825	by1000genomes	TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr6:160328707_160328731delCGCTATGCCCATGAGACTCCTTTAC	uc003qsz.2	+	1	734_758	c.720_744delCGCTATGCCCATGAGACTCCTTTAC	c.(718-744)TTCGCTATGCCCATGAGACTCCTTTACfs	p.F240fs		NM_002377	NP_002368	P04201	MAS_HUMAN	MAS1 oncogene	240_248	Extracellular (Potential).				anatomical structure morphogenesis|cell proliferation|protein kinase C signaling cascade	integral to plasma membrane	angiotensin type II receptor activity			ovary(2)|lung(2)	4		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.6e-06)		TCCTCATCTTCGCTATGCCCATGAGACTCCTTTACCTGCTGTACT	0.467													11	22	---	---	---	---					
RBAK	57786	broad.mit.edu	37	7	5104021	5104021	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr7:5104021delT	uc010kss.1	+	6	1258	c.934delT	c.(934-936)TTAfs	p.L312fs	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Frame_Shift_Del_p.L312fs	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	312					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		GAGATCACACTTAGAGGAGAA	0.438													14	61	---	---	---	---					
SVEP1	79987	broad.mit.edu	37	9	113244641	113244642	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A182-06A-11D-A196-08	TCGA-EE-A182-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a65379a5-49cd-4ac3-9f70-1075b1783b1f	6e821d80-f443-4093-99c3-4cfcb6b06d34	g.chr9:113244641_113244642insT	uc010mtz.2	-	11	2506_2507	c.2169_2170insA	c.(2167-2172)AAAGGTfs	p.K723fs	SVEP1_uc010mua.1_Frame_Shift_Ins_p.K723fs|SVEP1_uc004beu.2_Frame_Shift_Ins_p.K723fs	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	723_724	HYR 2.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AAGACAATACCTTTTATGACAA	0.396													13	18	---	---	---	---					
