Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC35E2	9906	broad.mit.edu	37	1	1670360	1670360	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:1670360C>T	uc001aib.1	-	3	874	c.458_splice	c.e3+1	p.R153_splice	SLC35E2B_uc001ahh.3_Intron|SLC35E2_uc009vkm.1_Splice_Site_p.R153_splice|SLC35E2_uc001ahy.2_Splice_Site_p.R153_splice|SLC35E2_uc001ahz.2_Splice_Site_p.R153_splice	NM_182838	NP_878258	P0CK97	S35E2_HUMAN	solute carrier family 35, member E2							integral to membrane				pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		AGATTCTTTACCTCATCAGAC	0.468000													5	15					0	0	0.008291	0	0
NPHP4	261734	broad.mit.edu	37	1	5947473	5947473	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:5947473G>A	uc001alq.1	-	18	2624	c.2358C>T	c.(2356-2358)GTC>GTT	p.V786V	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_RNA|NPHP4_uc001alt.1_RNA|NPHP4_uc009vlu.1_RNA	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	786					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		CAGTTGCCACGACCTCAAGCT	0.642000													23	31					0	0	0.021523	0	0
KLHL21	9903	broad.mit.edu	37	1	6659204	6659204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:6659204C>T	uc001aoa.2	-	2	1382	c.1330G>A	c.(1330-1332)GAC>AAC	p.D444N	KLHL21_uc001anz.1_Missense_Mutation_p.D444N|KLHL21_uc009vme.2_Missense_Mutation_p.D77N	NM_014851	NP_055666	Q9UJP4	KLH21_HUMAN	kelch-like 21	444	Kelch 4.				anaphase|cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|polar microtubule				central_nervous_system(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.36e-07)|COAD - Colon adenocarcinoma(227;1.4e-05)|Kidney(185;4.95e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000528)|KIRC - Kidney renal clear cell carcinoma(229;0.000927)|STAD - Stomach adenocarcinoma(132;0.0172)|READ - Rectum adenocarcinoma(331;0.0644)		AGGTCGGTGTCCGGGTCGTAG	0.637000													13	14					0	0	0.013537	0	0
VPS13D	55187	broad.mit.edu	37	1	12337851	12337851	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:12337851G>A	uc001atv.2	+	19	4347	c.4206G>A	c.(4204-4206)TTG>TTA	p.L1402L	VPS13D_uc001atw.2_Silent_p.L1402L|VPS13D_uc001atx.2_Silent_p.L590L	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1402					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TGGGACACTTGGGACAGATAT	0.428000													29	40					0	0	0.054565	0	0
CELA2A	63036	broad.mit.edu	37	1	15789319	15789319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:15789319G>A	uc001awk.2	+	4	345	c.319G>A	c.(319-321)GTG>ATG	p.V107M		NM_033440	NP_254275	P08217	CEL2A_HUMAN	elastase 2A preproprotein	107	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						TAAGATTGTGGTGCACAAGGA	0.587000													55	85					0	0	0.048971	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													4	70					0	0	0.009096	0	0
CROCCL1	84809	broad.mit.edu	37	1	16952963	16952963	+	RNA	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:16952963G>A	uc010ocf.1	-	1		c.32C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA|CROCCL1_uc001azg.1_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						CTTGGTCACGGAGAGCTCGAG	0.617000													8	39					0	0	0.038147	0	0
GRHL3	57822	broad.mit.edu	37	1	24669432	24669432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:24669432C>T	uc001biy.2	+	11	1397	c.1351C>T	c.(1351-1353)CTT>TTT	p.L451F	GRHL3_uc001bix.2_Missense_Mutation_p.L446F|GRHL3_uc001biz.2_Missense_Mutation_p.L353F	NM_021180	NP_067003	Q8TE85	GRHL3_HUMAN	sister-of-mammalian grainyhead protein isoform	446					regulation of actin cytoskeleton organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00171)|all_lung(284;0.00226)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;8.72e-25)|Colorectal(126;4.38e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00377)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.143)		GACGACCTACCTTCGGCCAGA	0.637000													78	101					0	0	0.048971	0	0
ARID1A	8289	broad.mit.edu	37	1	27099360	27099361	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:27099360_27099361CC>TT	uc001bmv.1	+	14	3970_3971	c.3597_3598CC>TT	c.(3595-3600)TTCCAG>TTTTAG	p.Q1200*	ARID1A_uc001bmt.1_Nonsense_Mutation_p.Q1199*|ARID1A_uc001bmu.1_Nonsense_Mutation_p.Q1200*|ARID1A_uc001bmw.1_Nonsense_Mutation_p.Q817*|ARID1A_uc001bmx.1_Nonsense_Mutation_p.Q46*|ARID1A_uc009vsm.1_5'UTR|ARID1A_uc009vsn.1_5'Flank	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1200					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		ACTCCACATTCCAGAAGCGGAA	0.455000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								24	28					0	0	0.004672	0	0
ZMYM1	79830	broad.mit.edu	37	1	35580024	35580024	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:35580024C>T	uc001bym.2	+	11	2741	c.2593C>T	c.(2593-2595)CTG>TTG	p.L865L	ZMYM1_uc001byn.2_Silent_p.L865L|ZMYM1_uc010ohu.1_Silent_p.L846L|ZMYM1_uc001byo.2_Silent_p.L505L|ZMYM1_uc009vut.2_Silent_p.L790L	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	865						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTTGAAATTCCTGTATCGAGT	0.328000													15	20					0	0	0.020292	0	0
ADPRHL2	54936	broad.mit.edu	37	1	36557548	36557548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:36557548C>T	uc001bzt.2	+	4	607	c.554C>T	c.(553-555)TCC>TTC	p.S185F	ADPRHL2_uc001bzu.2_Missense_Mutation_p.S31F	NM_017825	NP_060295	Q9NX46	ARHL2_HUMAN	ADP-ribosylhydrolase like 2	185						cytoplasm|nucleus	metal ion binding|poly(ADP-ribose) glycohydrolase activity			pancreas(1)	1		Myeloproliferative disorder(586;0.0393)				CACGCCTCCTCCCTGGGTTAC	0.637000													21	39					0	0	0.016522	0	0
EPS15	2060	broad.mit.edu	37	1	51869204	51869204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:51869204C>T	uc001csq.1	-	17	1770	c.1678G>A	c.(1678-1680)GCA>ACA	p.A560T	EPS15_uc009vyz.1_Missense_Mutation_p.A426T|EPS15_uc001csp.3_Missense_Mutation_p.A246T	NM_001981	NP_001972	P42566	EPS15_HUMAN	epidermal growth factor receptor pathway	560					cell proliferation|clathrin coat assembly|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|protein transport	cytosol|early endosome membrane	calcium ion binding|SH3 domain binding			lung(1)|kidney(1)	2						CTACTTCTTGCCTACAAAATA	0.323000			T	MLL	ALL								17	38					0	0	0.038395	0	0
S1PR1	1901	broad.mit.edu	37	1	101705320	101705320	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:101705320C>T	uc001dud.2	+	2	1294	c.780C>T	c.(778-780)ATC>ATT	p.I260I	S1PR1_uc009weg.2_Silent_p.I260I	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	260	Helical; Name=6; (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						CCGTAATTATCGTCCTGAGCG	0.597000													63	62					0	0	0.048971	0	0
KCNA10	3744	broad.mit.edu	37	1	111060906	111060906	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:111060906G>A	uc001dzt.1	-	1	892	c.504C>T	c.(502-504)TTC>TTT	p.F168F		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	168						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		CCAGCTCATAGAAGGAGATTT	0.483000													30	30					0	0	0.034045	0	0
TSPAN2	10100	broad.mit.edu	37	1	115604836	115604836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:115604836C>T	uc001eft.2	-	3	252	c.190G>A	c.(190-192)GGA>AGA	p.G64R		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	64	Helical; (Potential).					integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		GCCCCGGCTCCAACCAGAACA	0.612000													3	5					0	0	0.009096	0	0
HSD3B2	3284	broad.mit.edu	37	1	119965160	119965160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:119965160G>A	uc001ehs.2	+	3	1809	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K	HSD3B2_uc001eht.2_Missense_Mutation_p.E346K|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	346					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	CTACAGCTGGGAGGAAGCCAA	0.507000													32	31					0	0	0.045705	0	0
NOTCH2	4853	broad.mit.edu	37	1	120468252	120468253	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:120468252_120468253GG>AA	uc001eik.2	-	25	4442_4443	c.4186_4187CC>TT	c.(4186-4188)CCT>TTT	p.P1396F		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1396	Extracellular (Potential).|EGF-like 35.				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGAGTAATAAGGAGGCTGGCGC	0.663000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				129	202					0	0	0.004672	0	0
NBPF10	100132406	broad.mit.edu	37	1	145302714	145302714	+	Silent	SNP	A	G	G	rs9424867		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:145302714A>G	uc001end.3	+	8	1187	c.1152A>G	c.(1150-1152)TTA>TTG	p.L384L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_5'UTR|NBPF10_uc001emq.1_Silent_p.L113L	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGGAGAAGTTACGGGAAGGGA	0.527000													6	70					0	0	0.021553	0	0
NBPF10	100132406	broad.mit.edu	37	1	145360584	145360584	+	Missense_Mutation	SNP	G	A	A	rs78186669		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:145360584G>A	uc001end.3	+	76	9469	c.9434G>A	c.(9433-9435)GGG>GAG	p.G3145E	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oyq.1_Intron|NBPF10_uc010oyr.1_Missense_Mutation_p.G443E	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3070											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GATGAGAAAGGGCCTGAAGTC	0.483000													5	16					0	0	0.029380	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244000													3	79					0	0	0.004672	0	0
GJA8	2703	broad.mit.edu	37	1	147380904	147380904	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:147380904C>T	uc001epu.1	+	2	885	c.822C>T	c.(820-822)ATC>ATT	p.I274I		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	274	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					AAGAGAAAATCGTTTCCCACT	0.537000													19	39					0	0	0.038395	0	0
LMNA	4000	broad.mit.edu	37	1	156105804	156105804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:156105804C>T	uc001fni.2	+	6	1298	c.1049C>T	c.(1048-1050)GCA>GTA	p.A350V	LMNA_uc001fnf.1_Missense_Mutation_p.A350V|LMNA_uc001fng.2_Missense_Mutation_p.A350V|LMNA_uc001fnh.2_Missense_Mutation_p.A350V|LMNA_uc009wro.1_Missense_Mutation_p.A350V|LMNA_uc010pgz.1_Missense_Mutation_p.A238V|LMNA_uc001fnj.2_Missense_Mutation_p.A269V|LMNA_uc001fnk.2_Missense_Mutation_p.A251V|LMNA_uc009wrp.2_Nonsense_Mutation_p.Q78*|LMNA_uc010pha.1_Missense_Mutation_p.A6V	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	350	Coil 2.|Rod.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					GAGATGCGGGCAAGGATGCAG	0.647000									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				95	145					0	0	0.048971	0	0
OR6K3	391114	broad.mit.edu	37	1	158686994	158686994	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:158686994G>A	uc010pip.1	-	1	960	c.960C>T	c.(958-960)TTC>TTT	p.F320F		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	320	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					TTTGAAGACAGAACAGTTTTT	0.343000													29	51					0	0	0.054565	0	0
OR10J3	441911	broad.mit.edu	37	1	159284004	159284004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:159284004G>A	uc010piu.1	-	1	446	c.446C>T	c.(445-447)TCA>TTA	p.S149L		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					AATCCCCAGTGATCCAGAGGC	0.512000													23	29					0	0	0.018920	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161022309	161022309	+	Silent	SNP	C	T	T	rs140126629		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:161022309C>T	uc001fxl.2	-	8	1207	c.861G>A	c.(859-861)AGG>AGA	p.R287R	ARHGAP30_uc001fxk.2_Silent_p.R287R|ARHGAP30_uc001fxm.2_Silent_p.R133R|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_Silent_p.R133R	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	287					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			ACCTCCACTTCCTGACCTTCA	0.552000													67	109					0	0	0.048971	0	0
DUSP27	92235	broad.mit.edu	37	1	167097626	167097626	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:167097626G>A	uc001geb.1	+	5	3258	c.3258G>A	c.(3256-3258)AGG>AGA	p.R1086R		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1086					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GAGCCAAGAGGAAGTTCACCC	0.522000													12	17					0	0	0.013537	0	0
BAT2L2	23215	broad.mit.edu	37	1	171560901	171560901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:171560901C>T	uc010pmg.1	+	34	8635	c.8369C>T	c.(8368-8370)CCC>CTC	p.P2790L	BAT2L2_uc010pmh.1_Missense_Mutation_p.P1702L|BAT2L2_uc010pmi.1_Missense_Mutation_p.P706L|BAT2L2_uc010pmj.1_Missense_Mutation_p.P322L	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	1061	Pro-rich.						protein C-terminus binding				0						GAAAAGCCACCCCCTGCACCC	0.473000													36	64					0	0	0.064281	0	0
CACNA1S	779	broad.mit.edu	37	1	201046174	201046174	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:201046174G>A	uc001gvv.2	-	12	1928	c.1701C>T	c.(1699-1701)TTC>TTT	p.F567F		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	567	II.|Helical; Name=S5 of repeat II; (Potential).|Poly-Leu.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CGATGAAGAGGAAGAGCAGCA	0.557000													29	37					0	0	0.041601	0	0
PPP2R5A	5525	broad.mit.edu	37	1	212515562	212515562	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:212515562G>A	uc001hjb.2	+	4	1087	c.513G>A	c.(511-513)GAG>GAA	p.E171E	PPP2R5A_uc010ptd.1_Silent_p.E112E	NM_006243	NP_006234	Q15172	2A5A_HUMAN	protein phosphatase 2, regulatory subunit B	171					negative regulation of establishment of protein localization in plasma membrane|negative regulation of lipid kinase activity|positive regulation of protein dephosphorylation|signal transduction	chromosome, centromeric region|cytoplasm|nucleus|protein phosphatase type 2A complex	kinase binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0125)|all cancers(67;0.029)|Epithelial(68;0.154)|GBM - Glioblastoma multiforme(131;0.155)		GATTTTTGGAGAGCCCTGATT	0.343000													29	46					0	0	0.041601	0	0
GTPBP4	23560	broad.mit.edu	37	10	1041878	1041878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:1041878C>T	uc001ift.2	+	3	300	c.229C>T	c.(229-231)CCG>TCG	p.P77S	GTPBP4_uc010qac.1_Intron|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Intron|GTPBP4_uc010qae.1_Missense_Mutation_p.P30S	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	77					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		GGATATTCATCCGTTCTATGC	0.313000													15	11					0	0	0.028581	0	0
MLLT10	8028	broad.mit.edu	37	10	21962686	21962686	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:21962686C>T	uc001iqs.2	+	11	1807	c.1459C>T	c.(1459-1461)CAA>TAA	p.Q487*	MLLT10_uc001iqt.2_Nonsense_Mutation_p.Q487*|MLLT10_uc001iqv.2_RNA|MLLT10_uc001iqy.2_Nonsense_Mutation_p.Q487*|MLLT10_uc001ira.2_5'UTR|MLLT10_uc001irb.2_RNA|MLLT10_uc001iqz.2_Nonsense_Mutation_p.Q242*	NM_004641	NP_004632	P55197	AF10_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	487	DNA-binding.				positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(1)|skin(1)	2						AAACAAAAATCAAGAGAATGT	0.403000			T	MLL|PICALM|CDK6	AL								32	43					0	0	0.041601	0	0
GAD2	2572	broad.mit.edu	37	10	26534872	26534872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:26534872G>A	uc001isp.2	+	8	1366	c.863G>A	c.(862-864)GGA>GAA	p.G288E	GAD2_uc001isq.2_Missense_Mutation_p.G288E	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	288					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CTCAAGAAGGGAGCTGCAGCC	0.388000													5	15					0	0	0.021553	0	0
ZNF248	57209	broad.mit.edu	37	10	38121734	38121734	+	Silent	SNP	G	A	A	rs145831910		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:38121734G>A	uc001izd.1	-	6	1048	c.549C>T	c.(547-549)ATC>ATT	p.I183I	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Silent_p.I183I	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	183					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTCCAATAGGGATTTTCTCAT	0.343000													21	25					0	0	0.055883	0	0
C10orf72	196740	broad.mit.edu	37	10	50315758	50315758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:50315758G>A	uc001jhf.2	-	2	367	c.338C>T	c.(337-339)TCC>TTC	p.S113F	C10orf72_uc001jhh.2_Missense_Mutation_p.S113F	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	113	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						TGTCAAGACGGAGAGCCTGTA	0.622000													36	51					0	0	0.039052	0	0
PCDH15	65217	broad.mit.edu	37	10	55782888	55782888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:55782888G>A	uc001jju.1	-	19	2685	c.2290C>T	c.(2290-2292)CGT>TGT	p.R764C	PCDH15_uc010qhq.1_Missense_Mutation_p.R769C|PCDH15_uc010qhr.1_Missense_Mutation_p.R764C|PCDH15_uc010qhs.1_Missense_Mutation_p.R776C|PCDH15_uc010qht.1_Missense_Mutation_p.R771C|PCDH15_uc010qhu.1_Missense_Mutation_p.R764C|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.R764C|PCDH15_uc010qhw.1_Missense_Mutation_p.R727C|PCDH15_uc010qhx.1_Missense_Mutation_p.R693C|PCDH15_uc010qhy.1_Missense_Mutation_p.R769C|PCDH15_uc010qhz.1_Missense_Mutation_p.R764C|PCDH15_uc010qia.1_Missense_Mutation_p.R742C|PCDH15_uc010qib.1_Missense_Mutation_p.R742C|PCDH15_uc001jjw.2_Missense_Mutation_p.R764C	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	764	Extracellular (Potential).|Cadherin 7.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GATGTGATACGAAAAAGATTA	0.368000										HNSCC(58;0.16)			31	33					0	0	0.041601	0	0
ANK3	288	broad.mit.edu	37	10	61844949	61844949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:61844949C>T	uc001jky.2	-	31	4003	c.3811G>A	c.(3811-3813)GAT>AAT	p.D1271N	ANK3_uc001jkw.2_Missense_Mutation_p.D405N|ANK3_uc009xpa.2_Missense_Mutation_p.D405N|ANK3_uc001jkx.2_Missense_Mutation_p.D449N|ANK3_uc010qih.1_Missense_Mutation_p.D1272N|ANK3_uc001jkz.3_Missense_Mutation_p.D1265N|ANK3_uc001jla.1_Missense_Mutation_p.D337N|ANK3_uc001jlb.1_Missense_Mutation_p.D789N|ANK3_uc001jkv.2_5'Flank	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1271					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAGACACAATCTTTTATAAAC	0.388000													16	19					0	0	0.028581	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940135	68940135	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:68940135G>A	uc009xpn.1	-	7	1110	c.987C>T	c.(985-987)ATC>ATT	p.I329I	CTNNA3_uc001jmw.2_Silent_p.I329I|CTNNA3_uc001jmx.3_Silent_p.I329I|CTNNA3_uc009xpo.1_Silent_p.I189I|CTNNA3_uc001jna.2_Silent_p.I341I	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	329	Potential.				cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TGCATTCTGCGATAATCCGCT	0.522000													34	30					0	0	0.050027	0	0
ZMIZ1	57178	broad.mit.edu	37	10	80968157	80968157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:80968157C>T	uc001kaf.2	+	6	697	c.125C>T	c.(124-126)CCA>CTA	p.P42L	ZMIZ1_uc001kae.2_Missense_Mutation_p.P42L	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	42					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			TGCGGAGACCCACGGGCCTTC	0.617000													13	19					0	0	0.028581	0	0
NRG3	10718	broad.mit.edu	37	10	84733611	84733611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:84733611C>T	uc001kco.2	+	7	1379	c.1352C>T	c.(1351-1353)CCC>CTC	p.P451L	NRG3_uc010qlz.1_Missense_Mutation_p.P450L|NRG3_uc001kcp.2_Missense_Mutation_p.P230L|NRG3_uc001kcq.2_Missense_Mutation_p.P101L|NRG3_uc001kcr.2_Missense_Mutation_p.P101L	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	451	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		TTTGTCGGCCCCCAGTCATTC	0.502000													24	33					0	0	0.021523	0	0
GBF1	8729	broad.mit.edu	37	10	104122406	104122406	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:104122406C>T	uc001kux.1	+	15	2098	c.1858C>T	c.(1858-1860)CGA>TGA	p.R620*	GBF1_uc001kuy.1_Nonsense_Mutation_p.R620*|GBF1_uc001kuz.1_Nonsense_Mutation_p.R621*	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	620					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		AGATGGCACCCGAGAAGCTAG	0.502000													22	40					0	0	0.016522	0	0
CUEDC2	79004	broad.mit.edu	37	10	104184490	104184490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:104184490G>A	uc001kvn.2	-	3	285	c.134C>T	c.(133-135)TCG>TTG	p.S45L	CUEDC2_uc001kvm.2_5'Flank	NM_024040	NP_076945	Q9H467	CUED2_HUMAN	CUE domain containing 2	45						cytoplasm|nucleus	protein binding				0		Colorectal(252;0.122)		Epithelial(162;9.17e-09)|all cancers(201;2.16e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		TGATGGGCCCGAGGGGCCCAG	0.587000													24	59					0	0	0.027356	0	0
MUC2	4583	broad.mit.edu	37	11	1085976	1085976	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:1085976T>A	uc001lsx.1	+	22	2843	c.2816T>A	c.(2815-2817)ATC>AAC	p.I939N		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	939	VWFD 3.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CGTGTGGTGATCCAGCGTGAT	0.642000													16	35					0	0	0.038395	0	0
OR52L1	338751	broad.mit.edu	37	11	6007636	6007636	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:6007636G>A	uc001mcd.2	-	1	580	c.525C>T	c.(523-525)ATC>ATT	p.I175I		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	175	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGGAAGGGGATAAGGAGTA	0.498000													33	53					0	0	0.064281	0	0
SLC6A5	9152	broad.mit.edu	37	11	20676362	20676363	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:20676362_20676363CC>TT	uc001mqd.2	+	16	2615_2616	c.2342_2343CC>TT	c.(2341-2343)TCC>TTT	p.S781F	SLC6A5_uc009yic.2_Missense_Mutation_p.S546F	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	781	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	GGAACCTCTTCCTTGGGACTCA	0.554000													54	63					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	11	30902757	30902757	+	RNA	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:30902757C>T	uc001mss.1	-	15		c.2275G>A			uc009yjk.1_Silent_p.E1172E|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		CCATATCTCGCTCTATGTCGT	0.468000													25	38					0	0	0.024334	0	0
ELP4	26610	broad.mit.edu	37	11	31671743	31671743	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:31671743T>A	uc001mtb.2	+	9	1152	c.1117T>A	c.(1117-1119)TTA>ATA	p.L373I	ELP4_uc001mta.1_RNA|ELP4_uc001mtc.2_Missense_Mutation_p.L373I|ELP4_uc010rdz.1_Missense_Mutation_p.L374I	NM_019040	NP_061913	Q96EB1	ELP4_HUMAN	elongation protein 4 homolog	373					histone acetylation|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|Elongator holoenzyme complex|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|prostate(1)	3	Lung SC(675;0.225)					AGCTTTTAAATTAAAAAGGAA	0.259000													20	10					0	0	0.049695	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136411	40136411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:40136411G>A	uc001mxa.1	-	2	3396	c.1432C>T	c.(1432-1434)CCC>TCC	p.P478S	LRRC4C_uc001mxc.1_Missense_Mutation_p.P474S|LRRC4C_uc001mxd.1_Missense_Mutation_p.P474S|LRRC4C_uc001mxb.1_Missense_Mutation_p.P474S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	478					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				ACTGGAGTGGGACCCACATTG	0.517000													27	29					0	0	0.024334	0	0
OR4A15	81328	broad.mit.edu	37	11	55136058	55136058	+	Silent	SNP	G	A	A	rs141225150	byFrequency	TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:55136058G>A	uc010rif.1	+	1	699	c.699G>A	c.(697-699)GCG>GCA	p.A233A		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	233	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGGAGGAGCGATTTGTGCTG	0.413000													50	48					0	0	0.048971	0	0
OR5L2	26338	broad.mit.edu	37	11	55594880	55594880	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:55594880C>T	uc001nhy.1	+	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TGTACTTTTTCCTCAGCCACT	0.463000										HNSCC(27;0.073)			69	101					0	0	0.048971	0	0
INTS5	80789	broad.mit.edu	37	11	62415320	62415321	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:62415320_62415321CC>GT	uc001nud.2	-	2	2284_2285	c.2231_2232GG>AC	c.(2230-2232)GGG>GAC	p.G744D	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	744					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						CTGACCAAATCCCTCCAGGACC	0.525000													21	28					0	0	0.004672	0	0
FLRT1	23769	broad.mit.edu	37	11	63884758	63884759	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:63884758_63884759GG>AA	uc001nyi.1	+	2	1360_1361	c.1019_1020GG>AA	c.(1018-1020)CGG>CAA	p.R340Q	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	312	Extracellular (Potential).|LRRCT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						ATGTGGCTGCGGGACTGGGTGA	0.658000													14	33					0	0	0.004672	0	0
TMEM151A	256472	broad.mit.edu	37	11	66061887	66061887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:66061887C>T	uc001ohl.2	+	2	282	c.170C>T	c.(169-171)GCC>GTC	p.A57V		NM_153266	NP_694998	Q8N4L1	T151A_HUMAN	transmembrane protein 151A	57	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						GCCTGCGGGGCCGTGGTGGCC	0.741000													23	20					0	0	0.016522	0	0
RIN1	9610	broad.mit.edu	37	11	66102509	66102509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:66102509G>A	uc001ohn.1	-	6	888	c.761C>T	c.(760-762)TCC>TTC	p.S254F	RIN1_uc010roy.1_5'UTR|RIN1_uc009yrd.1_5'UTR|RIN1_uc010roz.1_Missense_Mutation_p.S149F|RIN1_uc010rpa.1_Missense_Mutation_p.S149F	NM_004292	NP_004283	Q13671	RIN1_HUMAN	ras inhibitor RIN1	254					endocytosis|signal transduction	cytoplasm|cytoskeleton|plasma membrane	GTPase activator activity|protein binding			lung(2)|breast(1)	3						CAGGGGGCTGGAGGTCTCTGT	0.657000													14	23					0	0	0.024245	0	0
NDUFV1	4723	broad.mit.edu	37	11	67379699	67379699	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:67379699T>G	uc001omj.2	+	9	1424	c.1271T>G	c.(1270-1272)ATT>AGT	p.I424S	NDUFV1_uc010rpv.1_Missense_Mutation_p.I323S|NDUFV1_uc001oml.2_Missense_Mutation_p.I417S|NDUFV1_uc001omk.3_Missense_Mutation_p.I415S|NDUFV1_uc010rpw.1_Missense_Mutation_p.I133S	NM_007103	NP_009034	P49821	NDUV1_HUMAN	NADH dehydrogenase ubiquinone flavoprotein 1	424					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|FMN binding|metal ion binding|NAD binding|NADH dehydrogenase (ubiquinone) activity			skin(1)	1					NADH(DB00157)	GGCCATACGATTTGTGCTCTG	0.622000													5	145					0	0	0.038147	0	0
MAP6	4135	broad.mit.edu	37	11	75299108	75299108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:75299108C>T	uc001owu.2	-	4	1503	c.1438G>A	c.(1438-1440)GAG>AAG	p.E480K		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	480						Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					TTCAGAGGCTCTTGCACCATA	0.517000													73	87					0	0	0.048971	0	0
OMP	4975	broad.mit.edu	37	11	76814343	76814343	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:76814343A>T	uc010rsk.1	+	1	458	c.458A>T	c.(457-459)AAC>ATC	p.N153I	CAPN5_uc001oxx.2_Intron|CAPN5_uc009yup.2_Intron|CAPN5_uc009yuq.2_Intron|CAPN5_uc001oxy.2_Intron	NM_006189	NP_006180	P47874	OMP_HUMAN	olfactory marker protein	153					sensory perception of smell|synaptic transmission						0						GAGCCCGCCAACCTCAAGGCC	0.632000													39	57					0	0	0.033182	0	0
ODZ4	26011	broad.mit.edu	37	11	78440627	78440627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:78440627C>T	uc001ozl.3	-	22	3663	c.3200G>A	c.(3199-3201)CGG>CAG	p.R1067Q		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1067	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GCCAGGGGTCCGGCTGCTCAG	0.582000													31	44					0	0	0.041601	0	0
FAT3	120114	broad.mit.edu	37	11	92534326	92534326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:92534326C>T	uc001pdj.3	+	9	8164	c.8147C>T	c.(8146-8148)ACC>ATC	p.T2716I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2716	Extracellular (Potential).|Cadherin 25.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TATTCCTTTACCATTGCAGAA	0.502000										TCGA Ovarian(4;0.039)			281	399					0	0	0.048971	0	0
CNTN5	53942	broad.mit.edu	37	11	99786873	99786873	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:99786873A>C	uc001pga.2	+	7	1004	c.665A>C	c.(664-666)CAT>CCT	p.H222P	CNTN5_uc009ywv.1_Missense_Mutation_p.H222P|CNTN5_uc001pfz.2_Missense_Mutation_p.H222P|CNTN5_uc001pgb.2_Missense_Mutation_p.H148P	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	222	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CCTCCGCCACATTCACCAGGT	0.458000													3	21					0	0	0.004672	0	0
TRPC6	7225	broad.mit.edu	37	11	101342100	101342100	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:101342100C>G	uc001pgk.3	-	9	2648	c.2223G>C	c.(2221-2223)GAG>GAC	p.E741D	TRPC6_uc009ywy.2_Missense_Mutation_p.E625D|TRPC6_uc009ywz.1_Missense_Mutation_p.E686D	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	741	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CAAATTTCCACTCCACATCAG	0.438000													13	51					0	0	0.016723	0	0
TRPC6	7225	broad.mit.edu	37	11	101375175	101375175	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:101375175C>T	uc001pgk.3	-	2	950	c.525G>A	c.(523-525)CGG>CGA	p.R175R	TRPC6_uc009ywy.2_Silent_p.R175R|TRPC6_uc009ywz.1_Silent_p.R175R	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	175	Cytoplasmic (Potential).|ANK 3.				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CTTCCACAATCCGAACATAAC	0.438000													24	16					0	0	0.016522	0	0
TRPC6	7225	broad.mit.edu	37	11	101375367	101375367	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:101375367G>A	uc001pgk.3	-	2	758	c.333C>T	c.(331-333)ATC>ATT	p.I111I	TRPC6_uc009ywy.2_Silent_p.I111I|TRPC6_uc009ywz.1_Silent_p.I111I	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	111	Cytoplasmic (Potential).|ANK 1.				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		GCACCACTGGGATGTTACCAT	0.478000													49	42					0	0	0.048971	0	0
FOXR1	283150	broad.mit.edu	37	11	118849898	118849899	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:118849898_118849899CC>TT	uc001pui.2	+	3	593_594	c.368_369CC>TT	c.(367-369)TCC>TTT	p.S123F	FOXR1_uc001puj.2_RNA|FOXR1_uc001puk.2_Missense_Mutation_p.P30F	NM_181721	NP_859072	Q6PIV2	FOXR1_HUMAN	forkhead box R1	123					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		TTTGCCTTTTCCCCCAGCACCT	0.599000													24	28					0	0	0.004672	0	0
ABCG4	64137	broad.mit.edu	37	11	119024977	119024977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:119024977G>A	uc001pvs.2	+	4	700	c.364G>A	c.(364-366)GGA>AGA	p.G122R	ABCG4_uc009zar.2_Missense_Mutation_p.G122R	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	122	Cytoplasmic (Potential).|ABC transporter.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		CAGGGAGTCTGGAATGAAGGG	0.547000													12	37					0	0	0.010729	0	0
SORL1	6653	broad.mit.edu	37	11	121358779	121358779	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:121358779C>T	uc001pxx.2	+	4	647	c.567C>T	c.(565-567)ATC>ATT	p.I189I		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	189	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ACCTCTGGATCACGTTTGACT	0.517000													71	204					0	0	0.048971	0	0
OR8D2	283160	broad.mit.edu	37	11	124189546	124189546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr11:124189546G>A	uc010sah.1	-	1	548	c.548C>T	c.(547-549)CCC>CTC	p.P183L		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		AGTCAATAAGGGGAGAATATC	0.448000													6	53					0	0	0.021553	0	0
CACNA1C	775	broad.mit.edu	37	12	2666141	2666141	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:2666141C>T	uc009zdu.1	+	11	1819	c.1506C>T	c.(1504-1506)TTC>TTT	p.F502F	CACNA1C_uc009zdv.1_Silent_p.F499F|CACNA1C_uc001qkb.2_Silent_p.F502F|CACNA1C_uc001qkc.2_Silent_p.F502F|CACNA1C_uc001qke.2_Silent_p.F502F|CACNA1C_uc001qkf.2_Silent_p.F502F|CACNA1C_uc001qjz.2_Silent_p.F502F|CACNA1C_uc001qkd.2_Silent_p.F502F|CACNA1C_uc001qkg.2_Silent_p.F502F|CACNA1C_uc009zdw.1_Silent_p.F502F|CACNA1C_uc001qkh.2_Silent_p.F502F|CACNA1C_uc001qkl.2_Silent_p.F502F|CACNA1C_uc001qkn.2_Silent_p.F502F|CACNA1C_uc001qko.2_Silent_p.F502F|CACNA1C_uc001qkp.2_Silent_p.F502F|CACNA1C_uc001qkr.2_Silent_p.F502F|CACNA1C_uc001qku.2_Silent_p.F502F|CACNA1C_uc001qkq.2_Silent_p.F502F|CACNA1C_uc001qks.2_Silent_p.F502F|CACNA1C_uc001qkt.2_Silent_p.F502F|CACNA1C_uc001qka.1_Silent_p.F37F|CACNA1C_uc001qki.1_Silent_p.F238F|CACNA1C_uc001qkj.1_Silent_p.F238F|CACNA1C_uc001qkk.1_Silent_p.F238F|CACNA1C_uc001qkm.1_Silent_p.F238F|CACNA1C_uc009zdy.1_Silent_p.F167F|CACNA1C_uc001qkv.1_Silent_p.F72F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	502	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGTCAAAGTTCAGGTGAGTGA	0.498000													18	28					0	0	0.043863	0	0
CACNA1C	775	broad.mit.edu	37	12	2788894	2788894	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:2788894G>A	uc009zdu.1	+	44	5833	c.5520G>A	c.(5518-5520)GAG>GAA	p.E1840E	CACNA1C_uc009zdv.1_Silent_p.E1789E|CACNA1C_uc001qkb.2_Silent_p.E1792E|CACNA1C_uc001qkc.2_Silent_p.E1811E|CACNA1C_uc001qke.2_Silent_p.E1781E|CACNA1C_uc001qkf.2_Silent_p.E1800E|CACNA1C_uc001qjz.2_Silent_p.E1792E|CACNA1C_uc001qkd.2_Silent_p.E1811E|CACNA1C_uc001qkg.2_Silent_p.E1798E|CACNA1C_uc009zdw.1_Silent_p.E1833E|CACNA1C_uc001qkh.2_Silent_p.E1800E|CACNA1C_uc001qkl.2_Silent_p.E1840E|CACNA1C_uc001qkn.2_Silent_p.E1792E|CACNA1C_uc001qko.2_Silent_p.E1812E|CACNA1C_uc001qkp.2_Silent_p.E1792E|CACNA1C_uc001qkr.2_Silent_p.E1809E|CACNA1C_uc001qku.2_Silent_p.E1792E|CACNA1C_uc001qkq.2_Silent_p.E1820E|CACNA1C_uc001qks.2_Silent_p.E1792E|CACNA1C_uc001qkt.2_Silent_p.E1811E|CACNA1C_uc001qki.1_Silent_p.E1528E|CACNA1C_uc001qkj.1_Silent_p.E1528E|CACNA1C_uc001qkk.1_Silent_p.E1528E|CACNA1C_uc001qkm.1_Silent_p.E1517E|CACNA1C_uc010sea.1_Silent_p.E483E|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Silent_p.E110E	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1840	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GCACTGTGGAGGGCCACGGGC	0.697000													7	7					0	0	0.029380	0	0
STRAP	11171	broad.mit.edu	37	12	16036573	16036573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:16036573G>A	uc001rdc.3	+	2	565	c.211G>A	c.(211-213)GCC>ACC	p.A71T	STRAP_uc010shw.1_Missense_Mutation_p.A84T|STRAP_uc001rdd.3_Intron	NM_007178	NP_009109	Q9Y3F4	STRAP_HUMAN	serine/threonine kinase receptor associated	71	WD 2.				mRNA processing|RNA splicing	cell junction|mitochondrion|spliceosomal complex	identical protein binding			skin(1)	1		Hepatocellular(102;0.121)				GAATAAGGATGCCACCAAAGC	0.453000													8	21					0	0	0.038147	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21015417	21015417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:21015417G>A	uc001rek.2	+	6	679	c.553G>A	c.(553-555)GAA>AAA	p.E185K	SLCO1B3_uc001rel.2_Missense_Mutation_p.E185K|SLCO1B3_uc010sil.1_Missense_Mutation_p.E185K|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.E10K	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	185	Helical; Name=4; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TGGCATAGGGGAAACCCCCAT	0.373000													27	38					0	0	0.037714	0	0
LDHB	3945	broad.mit.edu	37	12	21797036	21797036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:21797036G>A	uc001rfc.2	-	3	272	c.254C>T	c.(253-255)TCT>TTT	p.S85F	LDHB_uc001rfd.2_Missense_Mutation_p.S85F|LDHB_uc001rfe.2_Missense_Mutation_p.S85F	NM_002300	NP_002291	P07195	LDHB_HUMAN	L-lactate dehydrogenase B	85					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity			breast(2)|ovary(1)	3					NADH(DB00157)	GGCAGTCACAGAATAATCTTT	0.373000													13	17					0	0	0.016723	0	0
OVCH1	341350	broad.mit.edu	37	12	29640654	29640654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:29640654C>T	uc001rix.1	-	7	864	c.864G>A	c.(862-864)ATG>ATA	p.M288I		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	288	Peptidase S1 1.|CUB 1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					tgataaaatccatcaactcag	0.284000													5	6					0	0	0.014758	0	0
SLC38A4	55089	broad.mit.edu	37	12	47182355	47182355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:47182355C>T	uc001rpi.2	-	4	565	c.166G>A	c.(166-168)GGA>AGA	p.G56R	SLC38A4_uc001rpj.2_Missense_Mutation_p.G56R|SLC38A4_uc009zkl.2_Missense_Mutation_p.G56R	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	56	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CCCAAAAATCCATTTGTCAGG	0.383000													20	48					0	0	0.062417	0	0
BIN2	51411	broad.mit.edu	37	12	51707644	51707644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:51707644C>T	uc001ryg.2	-	2	177	c.125G>A	c.(124-126)CGA>CAA	p.R42Q	BIN2_uc009zlz.2_Missense_Mutation_p.R42Q|BIN2_uc001ryh.2_5'UTR|BIN2_uc010sng.1_Missense_Mutation_p.R16Q	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	42	BAR.					cytoplasm	protein binding			ovary(1)	1						TTGTTCAAATCGTTCATCTTT	0.463000													31	62					0	0	0.064281	0	0
GLI1	2735	broad.mit.edu	37	12	57865615	57865615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:57865615G>A	uc001snx.2	+	12	3170	c.3092G>A	c.(3091-3093)GGA>GAA	p.G1031E	GLI1_uc009zpq.2_Missense_Mutation_p.G903E	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	1031					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			CCTCCCGAAGGACAGGTATGT	0.582000													58	87					0	0	0.048971	0	0
MARCH9	92979	broad.mit.edu	37	12	58152034	58152034	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:58152034C>T	uc001spx.1	+	3	1069	c.657C>T	c.(655-657)CTC>CTT	p.L219L	MARCH9_uc001spy.2_Silent_p.L106L	NM_138396	NP_612405	Q86YJ5	MARH9_HUMAN	membrane-associated RING-CH protein IX	219	Helical; (Potential).					Golgi membrane|Golgi stack|integral to membrane|lysosomal membrane|trans-Golgi network	ligase activity|zinc ion binding				0	all_cancers(7;4.96e-69)|Lung NSC(6;5.5e-25)|all_lung(6;3.87e-23)|all_epithelial(6;1.66e-15)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;4.21e-120)|all cancers(5;3.75e-83)|BRCA - Breast invasive adenocarcinoma(9;0.0294)			AGGATCTGCTCTTTCAGATCT	0.537000													16	29					0	0	0.028581	0	0
LRIG3	121227	broad.mit.edu	37	12	59272672	59272672	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:59272672C>A	uc001sqr.2	-	14	2263	c.2017G>T	c.(2017-2019)GTA>TTA	p.V673L	LRIG3_uc009zqh.2_Missense_Mutation_p.V613L|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	673	Ig-like C2-type 2.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			CAGCTGTATACCCCAATGTCC	0.478000													26	70					5.61819e-17	6.51521e-17	0.027356	1	0
SYT1	6857	broad.mit.edu	37	12	79679682	79679682	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:79679682G>A	uc001sys.2	+	6	953	c.282G>A	c.(280-282)AAG>AAA	p.K94K	SYT1_uc001syt.2_Silent_p.K94K|SYT1_uc001syu.2_Silent_p.K94K|SYT1_uc001syv.2_Silent_p.K94K	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	94	Cytoplasmic (Potential).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						AGAAGGGAAAGGAAAAAGGAG	0.348000													12	22					0	0	0.010729	0	0
ACSS3	79611	broad.mit.edu	37	12	81536910	81536910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:81536910C>T	uc001szl.1	+	5	896	c.805C>T	c.(805-807)CGT>TGT	p.R269C	ACSS3_uc001szm.1_Missense_Mutation_p.R268C	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	269						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GGCTCCCGGTCGTGACCTTGA	0.408000													11	25					0	0	0.010729	0	0
NUAK1	9891	broad.mit.edu	37	12	106461156	106461156	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:106461156C>T	uc001tlj.1	-	7	2790	c.1410G>A	c.(1408-1410)AAG>AAA	p.K470K		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	470							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						TCTGCTGGGTCTTTTTCAAGA	0.572000													27	21					0	0	0.021523	0	0
SSH1	54434	broad.mit.edu	37	12	109186226	109186226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:109186226G>A	uc001tnm.2	-	14	1816	c.1729C>T	c.(1729-1731)CCC>TCC	p.P577S	SSH1_uc001tnl.2_Missense_Mutation_p.P265S|SSH1_uc010sxg.1_Missense_Mutation_p.P588S|SSH1_uc001tnn.3_Missense_Mutation_p.P577S	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	577					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						CGACCTTTGGGACTCCCAAAC	0.617000													42	50					0	0	0.025465	0	0
SDSL	113675	broad.mit.edu	37	12	113873216	113873216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:113873216G>A	uc001tvi.2	+	7	736	c.526G>A	c.(526-528)GGG>AGG	p.G176R	SDSL_uc009zwh.2_Missense_Mutation_p.G176R	NM_138432	NP_612441	Q96GA7	SDSL_HUMAN	serine dehydratase-like	176					cellular amino acid metabolic process		L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	AGTTGGGGGTGGGGGTCTCCT	0.667000													8	16					0	0	0.038147	0	0
SLC15A4	121260	broad.mit.edu	37	12	129294521	129294521	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr12:129294521C>G	uc001uhu.2	-	3	1031	c.978G>C	c.(976-978)TTG>TTC	p.L326F	SLC15A4_uc001uhv.2_Intron	NM_145648	NP_663623	Q8N697	S15A4_HUMAN	solute carrier family 15, member 4	326	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.69e-06)|Epithelial(86;1.17e-05)|all cancers(50;5.07e-05)		GTATCAAAGCCAAGAAAACAG	0.393000													25	33					0	0	0.030593	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24892958	24892958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr13:24892958G>A	uc001upj.2	+	3	230	c.169G>A	c.(169-171)GAA>AAA	p.E57K	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	57	Collagen-like 1.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		CCACCTAGGAGAACCAGGACG	0.498000													73	55					0	0	0.048971	0	0
LOC374491	374491	broad.mit.edu	37	13	25161457	25161457	+	RNA	SNP	G	A	A	rs1851732	by1000genomes	TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr13:25161457G>A	uc001upm.2	+	8		c.981G>A			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TTATTTATTCGATTCGTGGTA	0.378000													11	34					0	0	0.020292	0	0
FREM2	341640	broad.mit.edu	37	13	39264423	39264423	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr13:39264423T>C	uc001uwv.2	+	1	3251	c.2942T>C	c.(2941-2943)TTG>TCG	p.L981S		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	981	CSPG 6.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GACTTGATGTTGACTTTCCTC	0.448000													3	150					0	0	0.004672	0	0
KLHL1	57626	broad.mit.edu	37	13	70281924	70281924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr13:70281924C>T	uc001vip.2	-	10	2814	c.2020G>A	c.(2020-2022)GAT>AAT	p.D674N	KLHL1_uc010thm.1_Missense_Mutation_p.D613N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	674	Kelch 5.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GTTTTGGGATCATATCTAAAA	0.368000													34	17					0	0	0.064281	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370413	86370413	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr13:86370413C>T	uc001vll.1	-	2	690	c.231G>A	c.(229-231)ACG>ACA	p.T77T	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	77	Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TGTGAAGCATCGTCAAGCCGT	0.368000													54	119					0	0	0.048971	0	0
COL4A1	1282	broad.mit.edu	37	13	110850940	110850940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr13:110850940G>A	uc001vqw.3	-	21	1281	c.1159C>T	c.(1159-1161)CCT>TCT	p.P387S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	387	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CTTTCACCAGGGAAGCCAGGG	0.572000													35	87					0	0	0.027894	0	0
Unknown	0	broad.mit.edu	37	14	19857036	19857036	+	RNA	SNP	A	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:19857036A>G	uc001vvq.1	-	5		c.494T>C								Homo sapiens cDNA FLJ12852 fis, clone NT2RP2003445.																		CTGGATAATAAAGTTCATCTC	0.373000													4	94					0	0	0.009096	0	0
OR4K1	79544	broad.mit.edu	37	14	20404445	20404445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:20404445C>T	uc001vwj.1	+	1	620	c.620C>T	c.(619-621)TCA>TTA	p.S207L		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GGCCTGATATCATTGAGCTGT	0.433000													27	39					0	0	0.021523	0	0
ZNF219	51222	broad.mit.edu	37	14	21560062	21560062	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:21560062G>C	uc001vzr.2	-	3	1815	c.1394C>G	c.(1393-1395)TCT>TGT	p.S465C	ZNF219_uc001vzs.2_Missense_Mutation_p.S465C|ZNF219_uc010aik.1_Missense_Mutation_p.S465C	NM_016423	NP_057507	Q9P2Y4	ZN219_HUMAN	zinc finger protein 219	465					negative regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|histamine receptor activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;9.86e-11)|Epithelial(56;1.27e-08)|all cancers(55;6.06e-08)	GBM - Glioblastoma multiforme(265;0.0191)		CCCAGCAGCAGAGGCAGAGTG	0.637000													3	20					0	0	0.004672	0	0
RNF31	55072	broad.mit.edu	37	14	24620799	24620799	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:24620799C>T	uc001wmn.1	+	10	2092	c.1843C>T	c.(1843-1845)CAA>TAA	p.Q615*	RNF31_uc001wml.1_Nonsense_Mutation_p.Q464*|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Nonsense_Mutation_p.Q374*|RNF31_uc001wmo.1_Nonsense_Mutation_p.Q82*|RNF31_uc001wmp.2_RNA	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	615	Interaction with RBCK1.|UBA.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		GCTACAGCGCCAACGCCTAGA	0.642000													18	36					0	0	0.038395	0	0
G2E3	55632	broad.mit.edu	37	14	31058628	31058628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:31058628G>A	uc001wqk.2	+	4	329	c.175G>A	c.(175-177)GAA>AAA	p.E59K	G2E3_uc010tpe.1_Missense_Mutation_p.E13K|G2E3_uc010tpf.1_Missense_Mutation_p.E13K	NM_017769	NP_060239	Q7L622	G2E3_HUMAN	G2/M-phase specific E3 ubiquitin ligase	59					apoptosis|multicellular organismal development|protein modification process	Golgi apparatus|nucleolus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						CAAAGAAGAAGAAGGAGTTTA	0.289000													48	80					0	0	0.048971	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724523	38724523	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:38724523C>T	uc001wum.1	-	1	1052	c.705G>A	c.(703-705)TGG>TGA	p.W235*		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	235	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		AGAGTTTGTCCCAGCGAGCGC	0.622000													77	106					0	0	0.048971	0	0
SLC8A3	6547	broad.mit.edu	37	14	70527578	70527578	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:70527578C>T	uc001xly.2	-	3	2617	c.1863G>A	c.(1861-1863)CCG>CCA	p.P621P	SLC8A3_uc001xlu.2_Intron|SLC8A3_uc001xlv.2_5'UTR|SLC8A3_uc001xlw.2_Silent_p.P621P|SLC8A3_uc001xlx.2_Intron|SLC8A3_uc001xlz.2_Silent_p.P621P|SLC8A3_uc010ara.2_Intron|SLC8A3_uc001xma.2_Intron	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	621	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		CCATCCATTTCGGTTCACCAA	0.289000													23	37					0	0	0.021523	0	0
FAM181A	90050	broad.mit.edu	37	14	94394732	94394732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:94394732C>T	uc001ybz.1	+	3	594	c.287C>T	c.(286-288)TCC>TTC	p.S96F	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.S34F|FAM181A_uc001yca.1_Missense_Mutation_p.S34F	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	96											0						TGCCGCCGCTCCGTGGACCAT	0.612000													19	22					0	0	0.049695	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102483220	102483220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:102483220G>A	uc001yks.2	+	38	7896	c.7732G>A	c.(7732-7734)GAA>AAA	p.E2578K	DYNC1H1_uc001ykt.1_Missense_Mutation_p.E69K	NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2578	AAA 3 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AGTCCGCCACGAAGCCCTCTT	0.622000													23	22					0	0	0.024334	0	0
MARK3	4140	broad.mit.edu	37	14	103871440	103871440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:103871440G>A	uc001ymz.3	+	2	745	c.79G>A	c.(79-81)GAA>AAA	p.E27K	MARK3_uc001ymx.3_Missense_Mutation_p.E27K|MARK3_uc001ymw.3_Missense_Mutation_p.E27K|MARK3_uc001yna.3_Missense_Mutation_p.E27K|MARK3_uc001ymy.3_Missense_Mutation_p.E27K|MARK3_uc010awp.2_Missense_Mutation_p.E27K	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	27							ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			TGGGCGTCAAGAAGTTACCTC	0.463000													19	27					0	0	0.043863	0	0
ADAM6	8755	broad.mit.edu	37	14	106405797	106405797	+	RNA	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr14:106405797G>A	uc010tyt.1	-	2358		c.42267C>T								Parts of antibodies, mostly variable regions.												0						GGGACTGCCTGATCCAGTTCC	0.527000													38	61					0	0	0.033182	0	0
OR4M2	390538	broad.mit.edu	37	15	22369004	22369004	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr15:22369004C>T	uc010tzu.1	+	1	429	c.429C>T	c.(427-429)ATC>ATT	p.I143I	LOC727924_uc001yua.2_RNA|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCTGCTGTATCCTGGTGGCTC	0.507000													48	340					0	0	0.048971	0	0
GOLGA9P	283796	broad.mit.edu	37	15	23261104	23261104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr15:23261104C>T	uc001yvh.1	+	9	1078	c.536C>T	c.(535-537)TCG>TTG	p.S179L	uc001yvl.2_5'Flank	NR_024074				RecName: Full=Putative golgin subfamily A member 6-like protein 11;												0						AGAAAAATGTCGCAGGAGGTG	0.373000													35	48					0	0	0.048971	0	0
CHRNA7	1139	broad.mit.edu	37	15	32460294	32460294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr15:32460294G>A	uc001zft.2	+	10	1216	c.1144G>A	c.(1144-1146)GGG>AGG	p.G382R	uc001zfv.1_Intron|CHRNA7_uc010baf.2_Missense_Mutation_p.G201R|CHRNA7_uc010bak.2_Missense_Mutation_p.G297R	NM_000746	NP_000737	P36544	ACHA7_HUMAN	cholinergic receptor, nicotinic, alpha 7	382	Cytoplasmic (Potential).				activation of MAPK activity|calcium ion transport|cellular calcium ion homeostasis|memory|negative regulation of tumor necrosis factor production|positive regulation of angiogenesis|positive regulation of cell proliferation|response to hypoxia|response to nicotine	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|beta-amyloid binding|chloride channel regulator activity|nicotinic acetylcholine-activated cation-selective channel activity|protein homodimerization activity|toxin binding			ovary(1)	1		all_lung(180;6.35e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)	Nicotine(DB00184)|Varenicline(DB01273)	CGCCAGCAACGGGAACCTGCT	0.721000													5	18					0	0	0.013537	0	0
FMN1	342184	broad.mit.edu	37	15	33359296	33359296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr15:33359296C>T	uc001zhf.3	-	1	790	c.790G>A	c.(790-792)GAA>AAA	p.E264K	FMN1_uc001zhg.2_Missense_Mutation_p.E264K	NM_001103184	NP_001096654	Q68DA7	FMN1_HUMAN	formin 1	389	Microtubule-binding (By similarity).				actin cytoskeleton organization	actin cytoskeleton|adherens junction|cytoplasm|nucleus	actin binding			ovary(1)	1		all_lung(180;1.14e-07)		all cancers(64;3.05e-15)|Epithelial(43;1.67e-10)|GBM - Glioblastoma multiforme(186;4.95e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0262)		CCAGAGACTTCTTTTTTAGAA	0.512000													45	57					0	0	0.048971	0	0
ADAM10	102	broad.mit.edu	37	15	59009911	59009911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr15:59009911G>A	uc002afd.1	-	2	515	c.71C>T	c.(70-72)CCT>CTT	p.P24L	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Intron|ADAM10_uc002afe.1_Intron|ADAM10_uc002afg.2_Missense_Mutation_p.P24L	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	24	Extracellular (Potential).				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		TTTATTTAAAGGATTCCCATA	0.328000													5	13					0	0	0.021553	0	0
DET1	55070	broad.mit.edu	37	15	89073889	89073890	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr15:89073889_89073890CC>TA	uc002bmr.2	-	2	1199_1200	c.1047_1048GG>TA	c.(1045-1050)GAGGAT>GATAAT	p.349_350ED>DN	DET1_uc002bmp.3_RNA|DET1_uc010bnk.2_RNA|DET1_uc002bmq.2_Missense_Mutation_p.360_361ED>DN	NM_001144074	NP_001137546	Q7L5Y6	DET1_HUMAN	de-etiolated 1 isoform 2	349_350						nucleus				lung(1)|pancreas(1)	2	Lung NSC(78;0.105)|all_lung(78;0.182)		BRCA - Breast invasive adenocarcinoma(143;0.188)			GTTACTACATCCTCACTAGTGT	0.455000													12	38					0	0	0.004672	0	0
TELO2	9894	broad.mit.edu	37	16	1545502	1545503	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:1545502_1545503CC>TT	uc002cly.2	+	3	782_783	c.491_492CC>TT	c.(490-492)CCC>CTT	p.P164L	TELO2_uc010uvg.1_Missense_Mutation_p.P164L	NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	164						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				GTGGCCCTGCCCGATCACCTGG	0.683000													19	13					0	0	0.004672	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858028	9858028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:9858028C>T	uc002czo.3	-	13	3921	c.3373G>A	c.(3373-3375)GAG>AAG	p.E1125K	GRIN2A_uc010uym.1_Missense_Mutation_p.E1125K|GRIN2A_uc010uyn.1_Missense_Mutation_p.E968K|GRIN2A_uc002czr.3_Missense_Mutation_p.E1125K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1125	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AAACCAGGCTCCTTCTCACCA	0.507000													73	75					0	0	0.048971	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11846620	11846620	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:11846620G>A	uc002dbk.2	-	21	2829	c.2631C>T	c.(2629-2631)TCC>TCT	p.S877S	ZC3H7A_uc002dbh.2_Silent_p.S17S|ZC3H7A_uc002dbi.2_Silent_p.S65S|ZC3H7A_uc002dbj.2_RNA|ZC3H7A_uc002dbl.2_Silent_p.S877S	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	877	C2H2-type.					nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GCTTCTCGGAGGAGATGTGGC	0.502000													32	42					0	0	0.041601	0	0
ACSM2B	348158	broad.mit.edu	37	16	20559726	20559726	+	Missense_Mutation	SNP	C	T	T	rs138313532	byFrequency	TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:20559726C>T	uc002dhj.3	-	8	1174	c.964G>A	c.(964-966)GAT>AAT	p.D322N	ACSM2B_uc002dhk.3_Missense_Mutation_p.D322N|ACSM2B_uc010bwf.1_Missense_Mutation_p.D322N	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	322					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CTGGAAAGATCCTGCTGTAGC	0.493000													32	70					0	0	0.036044	0	0
ATP2A1	487	broad.mit.edu	37	16	28913196	28913196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:28913196G>A	uc002dro.1	+	16	2297	c.2113G>A	c.(2113-2115)GTC>ATC	p.V705I	uc010vct.1_Intron|ATP2A1_uc002drn.1_Missense_Mutation_p.V705I|ATP2A1_uc002drp.1_Missense_Mutation_p.V580I	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	705	Cytoplasmic (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGGTGATGGCGTCAATGACGC	0.493000													13	9					0	0	0.013537	0	0
ZNF48	197407	broad.mit.edu	37	16	30410306	30410306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:30410306G>A	uc002dya.1	+	2	1794	c.1735G>A	c.(1735-1737)GGT>AGT	p.G579S	ZNF48_uc002dxz.1_Missense_Mutation_p.G456S	NM_152652	NP_689865	Q96MX3	ZNF48_HUMAN	zinc finger protein 48	579	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTGTGGCAAGGGTTTTGGTGA	0.592000													40	60					0	0	0.025465	0	0
ZNF646	9726	broad.mit.edu	37	16	31087996	31087996	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:31087996C>T	uc002eap.2	+	2	640	c.351C>T	c.(349-351)CTC>CTT	p.L117L	ZNF668_uc002eao.2_5'Flank	NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	117					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						CTCCACACCTCCAGGGTGAGA	0.587000													21	31					0	0	0.049695	0	0
MMP15	4324	broad.mit.edu	37	16	58073885	58073885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:58073885C>T	uc002ena.2	+	4	1520	c.547C>T	c.(547-549)CCC>TCC	p.P183S		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	183	Extracellular (Potential).				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						CCAGGAGGTGCCCTATGAGGA	0.642000													22	42					0	0	0.014323	0	0
CNOT1	23019	broad.mit.edu	37	16	58612679	58612679	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:58612679A>C	uc002env.2	-	13	1801	c.1508T>G	c.(1507-1509)ATC>AGC	p.I503S	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.I503S|CNOT1_uc002enx.2_Missense_Mutation_p.I503S|CNOT1_uc002enz.1_Intron	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	503					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		CAGAGTGGAGATAAGTTCATG	0.448000													31	38					0	0	0.041601	0	0
EXOC3L	283849	broad.mit.edu	37	16	67223040	67223040	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:67223040C>T	uc002erx.1	-	3	331	c.90G>A	c.(88-90)CGG>CGA	p.R30R	EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_5'UTR|EXOC3L_uc002ery.1_Silent_p.R35R|EXOC3L_uc010vje.1_Silent_p.R30R	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	30	Mediates interaction with EXOC2, EXOC4 and EXOC5 (By similarity).				exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		GCGCTGCACCCCGGGCCAGCT	0.692000													8	15					0	0	0.058154	0	0
PRMT7	54496	broad.mit.edu	37	16	68389640	68389640	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:68389640C>T	uc002evy.1	+	17	1941	c.1665C>T	c.(1663-1665)TTC>TTT	p.F555F	PRMT7_uc010vlg.1_Silent_p.F505F|PRMT7_uc002evz.1_Silent_p.F327F|PRMT7_uc010cfd.1_Silent_p.F47F	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	555					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		CCCTGGACTTCAGGGAGAGCA	0.667000													3	11					0	0	0.009096	0	0
HYDIN	54768	broad.mit.edu	37	16	70896141	70896141	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:70896141G>A	uc002ezr.2	-	69	11712	c.11584C>T	c.(11584-11586)CAG>TAG	p.Q3862*	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3863										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGACTAAGCTGATCTTTTTGA	0.577000													13	15					0	0	0.020292	0	0
GLG1	2734	broad.mit.edu	37	16	74496465	74496465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:74496465C>T	uc002fcy.3	-	21	2905	c.2855G>A	c.(2854-2856)GGT>GAT	p.G952D	GLG1_uc002fcx.2_Missense_Mutation_p.G952D|GLG1_uc002fcw.3_Missense_Mutation_p.G941D|GLG1_uc002fcz.3_Missense_Mutation_p.G369D	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	952	Cys-rich GLG1 14.|Extracellular (Potential).					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						AGTCAGGATACCGTGACAGAA	0.443000													18	35					0	0	0.033300	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76461454	76461454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:76461454G>A	uc002feu.1	+	6	881	c.496G>A	c.(496-498)GGC>AGC	p.G166S	CNTNAP4_uc002fev.1_Missense_Mutation_p.G78S|CNTNAP4_uc010chb.1_Missense_Mutation_p.G141S|CNTNAP4_uc002fex.1_Missense_Mutation_p.G169S|CNTNAP4_uc002few.2_Missense_Mutation_p.G141S	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	166	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GAACCCCAAGGGCAGAATTGG	0.408000													43	56					0	0	0.030466	0	0
USP10	9100	broad.mit.edu	37	16	84767063	84767063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr16:84767063C>T	uc002fii.2	+	2	186	c.44C>T	c.(43-45)CCT>CTT	p.P15L	USP10_uc010voe.1_Missense_Mutation_p.P19L|USP10_uc010vof.1_5'UTR|USP10_uc002fij.2_5'UTR	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	15	Interaction with p53/TP53.				DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						GATTTTAGCCCTGATGAATTC	0.289000													28	69					0	0	0.050027	0	0
PRPF8	10594	broad.mit.edu	37	17	1564924	1564924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:1564924C>T	uc002fte.2	-	26	4297	c.4183G>A	c.(4183-4185)GAG>AAG	p.E1395K		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1395						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		GCAATGGCCTCTTGCCTCTTG	0.577000													19	26					0	0	0.055883	0	0
GGT6	124975	broad.mit.edu	37	17	4461952	4461952	+	Silent	SNP	T	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:4461952T>C	uc002fyd.3	-	4	900	c.840A>G	c.(838-840)GGA>GGG	p.G280G	GGT6_uc010vsb.1_Silent_p.G132G|GGT6_uc002fyc.3_Silent_p.G248G|GGT6_uc010vsc.1_Silent_p.G286G	NM_001122890	NP_001116362	Q6P531	GGT6_HUMAN	gamma-glutamyltransferase 6 isoform a	280	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			skin(1)	1						CCCCCAGGTCTCCCGCCAGTA	0.657000													3	13					0	0	0.029380	0	0
USP6	9098	broad.mit.edu	37	17	5049436	5049436	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:5049436C>T	uc002gau.1	+	28	4516	c.2286C>T	c.(2284-2286)ATC>ATT	p.I762I	USP6_uc002gav.1_Silent_p.I762I|USP6_uc010ckz.1_Silent_p.I445I	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	762					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CAGAACAAATCCTACTAGCAG	0.348000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								40	75					0	0	0.039052	0	0
POLR2A	5430	broad.mit.edu	37	17	7400322	7400322	+	Silent	SNP	C	T	T	rs142508418		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:7400322C>T	uc002ghf.3	+	5	1011	c.777C>T	c.(775-777)TCC>TCT	p.S259S	POLR2A_uc002ghe.2_Silent_p.S259S	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	259					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CCCCGCTCTCCGTGCGGCCTG	0.607000													13	8					0	0	0.028581	0	0
KDM6B	23135	broad.mit.edu	37	17	7752119	7752119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:7752119C>T	uc002giw.1	+	11	2889	c.2513C>T	c.(2512-2514)TCC>TTC	p.S838F	KDM6B_uc002gix.2_Missense_Mutation_p.S140F	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	838	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						ACTCAGTATTCCCCTGGCCCC	0.647000													45	59					0	0	0.048971	0	0
MYH1	4619	broad.mit.edu	37	17	10399635	10399635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:10399635C>T	uc002gmo.2	-	34	4982	c.4888G>A	c.(4888-4890)GAA>AAA	p.E1630K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1630	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						AGCTGGATTTCCATTTCATTG	0.498000													67	60					0	0	0.048971	0	0
MYH1	4619	broad.mit.edu	37	17	10419519	10419519	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:10419519G>A	uc002gmo.2	-	4	439	c.345C>T	c.(343-345)ATC>ATT	p.I115I	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	115	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						AACTCACGTAGATCATCCAGG	0.438000													52	74					0	0	0.048971	0	0
TRPV2	51393	broad.mit.edu	37	17	16340149	16340149	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:16340149G>A	uc002gpy.2	+	15	2608	c.2241G>A	c.(2239-2241)GAG>GAA	p.E747E	TRPV2_uc002gpz.2_Silent_p.E317E|NCRNA00188_uc010vwf.1_5'Flank|NCRNA00188_uc010vwg.1_5'Flank|NCRNA00188_uc010vwh.1_5'Flank|NCRNA00188_uc010cpd.2_5'Flank|NCRNA00188_uc002gqc.2_5'Flank|NCRNA00188_uc002gqb.3_5'Flank|NCRNA00188_uc010vwi.1_5'Flank|NCRNA00188_uc010vwj.1_5'Flank|NCRNA00188_uc002gqa.3_5'Flank|NCRNA00188_uc010vwk.1_5'Flank|NCRNA00188_uc010vwl.1_5'Flank|NCRNA00188_uc010vwm.1_5'Flank|NCRNA00188_uc010vwn.1_5'Flank|NCRNA00188_uc010cpe.2_5'Flank|NCRNA00188_uc010vwo.1_5'Flank|NCRNA00188_uc010vwp.1_5'Flank|SNORD49B_uc010cpf.2_5'Flank	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	747	Cytoplasmic (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		AGGAGGATGAGGATGGTGCCT	0.557000													30	69					0	0	0.064281	0	0
TOM1L2	146691	broad.mit.edu	37	17	17797059	17797059	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:17797059G>A	uc002grz.3	-	4	439	c.282C>T	c.(280-282)TTC>TTT	p.F94F	TOM1L2_uc002gry.3_Intron|TOM1L2_uc010vwy.1_Silent_p.F94F|TOM1L2_uc010cpr.2_Silent_p.F94F|TOM1L2_uc010vwz.1_Intron|TOM1L2_uc010vxa.1_Silent_p.F94F|TOM1L2_uc010vxb.1_Intron	NM_001082968	NP_001076437	Q6ZVM7	TM1L2_HUMAN	target of myb1-like 2 isoform 3	94	VHS.				intracellular protein transport	intracellular					0	all_neural(463;0.228)					CACTGTCGATGAAATCTCGGT	0.517000													30	37					0	0	0.037714	0	0
SLC6A4	6532	broad.mit.edu	37	17	28544223	28544223	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:28544223G>A	uc002hey.3	-	6	1342	c.798C>T	c.(796-798)ATC>ATT	p.I266I		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	266	Helical; Name=4; (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	TGCTGAAGTAGATAACAGTGA	0.612000													41	58					0	0	0.033182	0	0
PEX12	5193	broad.mit.edu	37	17	33904984	33904985	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:33904984_33904985GG>AA	uc002hjp.2	-	1	672_673	c.56_57CC>TT	c.(55-57)TCC>TTT	p.S19F		NM_000286	NP_000277	O00623	PEX12_HUMAN	peroxisomal biogenesis factor 12	19	Cytoplasmic (Potential).				protein import into peroxisome matrix	integral to peroxisomal membrane	protein C-terminus binding|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCTCAAAGATGGATGGCTGGTC	0.495000													32	39					0	0	0.004672	0	0
MRPL45	84311	broad.mit.edu	37	17	36478143	36478143	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:36478143C>T	uc002hpy.2	+	7	947	c.795C>T	c.(793-795)ATC>ATT	p.I265I		NM_032351	NP_115727	Q9BRJ2	RM45_HUMAN	mitochondrial ribosomal protein L45 precursor	265					intracellular protein transport|translation	mitochondrial inner membrane presequence translocase complex|ribosome	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|structural constituent of ribosome				0	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				ATACCAAGATCGTTCCCCCAT	0.502000											OREG0024353	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	45					0	0	0.018920	0	0
SC65	10609	broad.mit.edu	37	17	39967158	39967158	+	Silent	SNP	G	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:39967158G>T	uc002hxt.2	-	3	1028	c.744C>A	c.(742-744)GCC>GCA	p.A248A	FKBP10_uc002hxv.2_5'Flank|SC65_uc002hxu.2_Silent_p.A339A	NM_006455	NP_006446	Q92791	SC65_HUMAN	synaptonemal complex protein SC65	248					synaptonemal complex assembly	nucleolus|synaptonemal complex	binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.149)		CCTGCTCATGGGCCCCTTCAC	0.642000													18	18					8.34094e-07	9.48667e-07	0.049695	1	0
WFIKKN2	124857	broad.mit.edu	37	17	48917466	48917466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:48917466G>A	uc002isv.3	+	2	1511	c.817G>A	c.(817-819)GTC>ATC	p.V273I	WFIKKN2_uc010dbu.2_Missense_Mutation_p.V180I	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	273	Ig-like C2-type.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			TGCCCAGCTGGTCATCTATAA	0.602000													34	24					0	0	0.054565	0	0
BZRAP1	9256	broad.mit.edu	37	17	56385969	56385969	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:56385969C>A	uc002ivx.3	-	22	5535	c.4664G>T	c.(4663-4665)TGG>TTG	p.W1555L	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.W1495L|BZRAP1_uc010wnt.1_Missense_Mutation_p.W1555L	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1555						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCCTTTCTCCCAGGCTGGGAG	0.697000													24	29					8.24728e-16	9.53736e-16	0.024334	1	0
PPM1E	22843	broad.mit.edu	37	17	57057398	57057398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:57057398G>A	uc002iwx.2	+	7	1401	c.1274G>A	c.(1273-1275)GGG>GAG	p.G425E	PPM1E_uc010ddd.2_Missense_Mutation_p.G188E	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	434	PP2C-like.				protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			GTTCTGGATGGGACCGAAGAC	0.493000													19	33					0	0	0.055883	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	G	G	rs138671696	by1000genomes	TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:62968690A>G	uc002jez.3	-	4		c.641T>C			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AAAATTCCACAAGTCTCTTGG	0.373000													4	88					0	0	0.009096	0	0
DNAH17	8632	broad.mit.edu	37	17	76450757	76450757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:76450757G>A	uc010dhp.1	-	9	1423	c.1201C>T	c.(1201-1203)CCC>TCC	p.P401S	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			AGGCTCAAGGGATCCAGGCCA	0.577000													20	32					0	0	0.049695	0	0
CARD14	79092	broad.mit.edu	37	17	78178894	78178894	+	Missense_Mutation	SNP	G	C	C	rs147954634		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:78178894G>C	uc002jxw.1	+	18	2654	c.2459G>C	c.(2458-2460)TGG>TCG	p.W820S	CARD14_uc002jxt.1_RNA	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1	820	Guanylate kinase-like.				activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			ACCCTGGTGCGGCCCCATCGA	0.667000													8	16					0	0	0.047766	0	0
ARL16	339231	broad.mit.edu	37	17	79650840	79650840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr17:79650840C>T	uc002kbf.2	-	1	115	c.16G>A	c.(16-18)GGG>AGG	p.G6R	ARL16_uc002kbe.2_5'Flank|HGS_uc010wus.1_5'Flank|HGS_uc002kbg.2_5'Flank	NM_001040025	NP_001035114	Q0P5N6	ARL16_HUMAN	ADP-ribosylation factor-like 16	6							GTP binding				0	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			AAGGCCCGCCCACCGGCCACT	0.637000													10	13					0	0	0.013537	0	0
KIAA1328	57536	broad.mit.edu	37	18	34415210	34415210	+	Silent	SNP	A	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr18:34415210A>G	uc002kzz.2	+	3	130	c.108A>G	c.(106-108)GAA>GAG	p.E36E		NM_020776	NP_065827	Q86T90	K1328_HUMAN	hypothetical protein LOC57536	36										central_nervous_system(1)	1				COAD - Colon adenocarcinoma(74;0.195)		TTTCTGCTGAAGGAAATGTCA	0.388000													55	38					0	0	0.048971	0	0
SLC14A1	6563	broad.mit.edu	37	18	43319189	43319189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr18:43319189G>A	uc010xcn.1	+	8	1044	c.725G>A	c.(724-726)GGG>GAG	p.G242E	SLC14A1_uc010dnk.2_Missense_Mutation_p.G298E|SLC14A1_uc002lbf.3_Missense_Mutation_p.G242E|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Missense_Mutation_p.G137E|SLC14A1_uc002lbh.3_Missense_Mutation_p.G134E|SLC14A1_uc002lbi.3_Missense_Mutation_p.G110E|SLC14A1_uc002lbj.3_Missense_Mutation_p.G298E|SLC14A1_uc002lbk.3_Missense_Mutation_p.G242E	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	242						integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						CCATGGACAGGGGGCATTTTC	0.483000													36	33					0	0	0.025465	0	0
KIAA1632	57724	broad.mit.edu	37	18	43432602	43432602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr18:43432602G>A	uc002lbm.2	-	44	7670	c.7570C>T	c.(7570-7572)CTT>TTT	p.L2524F		NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2524					autophagy						0						ATGGATTCAAGAGCATTCAGA	0.443000													14	27					0	0	0.024245	0	0
NEDD4L	23327	broad.mit.edu	37	18	56008975	56008976	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr18:56008975_56008976CC>TT	uc002lgy.2	+	15	1597_1598	c.1323_1324CC>TT	c.(1321-1326)ATCCGC>ATTTGC	p.R442C	NEDD4L_uc002lgz.2_Missense_Mutation_p.R378C|NEDD4L_uc002lgx.2_Missense_Mutation_p.R422C|NEDD4L_uc010xee.1_Missense_Mutation_p.R321C|NEDD4L_uc002lhc.2_Missense_Mutation_p.R434C|NEDD4L_uc002lhd.2_Missense_Mutation_p.R321C|NEDD4L_uc002lhb.2_Missense_Mutation_p.R301C|NEDD4L_uc002lhe.2_Missense_Mutation_p.R414C|NEDD4L_uc002lhf.2_Missense_Mutation_p.R301C|NEDD4L_uc002lhg.2_Missense_Mutation_p.R321C|NEDD4L_uc002lhh.2_Intron|NEDD4L_uc010dpm.1_Intron	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	442					cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						AGCCTCAGATCCGCCGGCCTCG	0.520000													6	5					0	0	0.004672	0	0
ABCA7	10347	broad.mit.edu	37	19	1041569	1041569	+	Missense_Mutation	SNP	C	T	T	rs149348071		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:1041569C>T	uc002lqw.3	+	3	358	c.127C>T	c.(127-129)CGC>TGC	p.R43C	ABCA7_uc010dsb.1_5'Flank|ABCA7_uc010dsa.2_Missense_Mutation_p.R43C	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	43	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTGGCTGTTCGCCACTCCCA	0.627000													28	34					0	0	0.041601	0	0
MUC16	94025	broad.mit.edu	37	19	9063944	9063944	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:9063944C>T	uc002mkp.2	-	3	23706	c.23502G>A	c.(23500-23502)AGG>AGA	p.R7834R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7836	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGCTGGACTCCCTCAATCCAG	0.547000													31	41					0	0	0.034045	0	0
MUC16	94025	broad.mit.edu	37	19	9070509	9070509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:9070509G>A	uc002mkp.2	-	3	17141	c.16937C>T	c.(16936-16938)TCC>TTC	p.S5646F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5648	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGATGTGGAGGAAACAGGAGA	0.517000													16	23					0	0	0.038395	0	0
MUC16	94025	broad.mit.edu	37	19	9084874	9084874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:9084874C>T	uc002mkp.2	-	1	7145	c.6941G>A	c.(6940-6942)GGA>GAA	p.G2314E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2314	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTTCTCTCTCCCAGTGTAAT	0.483000													15	13					0	0	0.020292	0	0
NOTCH3	4854	broad.mit.edu	37	19	15276800	15276800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:15276800G>A	uc002nan.2	-	30	5541	c.5465C>T	c.(5464-5466)TCC>TTC	p.S1822F		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1822	Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GATCAGGTCGGAGATGATGCT	0.607000													11	33					0	0	0.013537	0	0
FCHO1	23149	broad.mit.edu	37	19	17892342	17892342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:17892342G>A	uc010ebb.2	+	21	2011	c.1822G>A	c.(1822-1824)GGA>AGA	p.G608R	FCHO1_uc002nhg.3_Missense_Mutation_p.G608R|FCHO1_uc002nhh.2_Missense_Mutation_p.G608R|FCHO1_uc010xpw.1_Missense_Mutation_p.G558R|FCHO1_uc002nhi.2_Missense_Mutation_p.G64R|FCHO1_uc002nhj.2_5'UTR	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	608										breast(1)	1						ATCCCAGACAGGACACGGTAT	0.612000													24	33					0	0	0.018920	0	0
IL12RB1	3594	broad.mit.edu	37	19	18193075	18193075	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:18193075C>T	uc002nhw.1	-	3	189	c.125_splice	c.e3-1	p.G42_splice	IL12RB1_uc010xqb.1_Splice_Site_p.G42_splice|IL12RB1_uc002nhx.1_Splice_Site_p.G82_splice|IL12RB1_uc002nhy.2_Splice_Site_p.G42_splice	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1						cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						GAGGCCGAGCCTGGAAGAGAT	0.552000													7	12					0	0	0.038147	0	0
C19orf50	79036	broad.mit.edu	37	19	18679426	18679426	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:18679426G>A	uc002njo.2	+	5	658	c.516G>A	c.(514-516)GAG>GAA	p.E172E	C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_Silent_p.E172E	NM_024069	NP_076974	Q9BQD3	CS050_HUMAN	hypothetical protein LOC79036	172							protein binding				0						ATGACGAGGAGATGACGGGCG	0.647000													27	20					0	0	0.021523	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41442409	41442409	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:41442409G>A	uc010ehg.1	+	3	455	c.447G>A	c.(445-447)GAG>GAA	p.E149E	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Silent_p.E149E|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						TTCAGGACGAGGCTCAGTGTC	0.542000													8	11					0	0	0.038147	0	0
PSG1	5669	broad.mit.edu	37	19	43383679	43383679	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:43383679G>A	uc002ovb.2	-	1	193	c.55C>T	c.(55-57)CTG>TTG	p.L19L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.L19L|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Silent_p.L19L|PSG1_uc010eio.1_Silent_p.L19L|PSG1_uc002oux.1_5'Flank|PSG1_uc002ouy.1_Silent_p.L19L|PSG1_uc002ouz.1_Silent_p.L19L|PSG1_uc002ova.1_Silent_p.L19L|PSG1_uc002ovc.2_Silent_p.L19L|PSG1_uc002ovd.1_Silent_p.L19L	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	19					female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				CCTGTGAGCAGGAGCCCCTTC	0.552000													47	70					0	0	0.048971	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969002	47969002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:47969002G>A	uc002pgx.2	-	2	937	c.659C>T	c.(658-660)TCC>TTC	p.S220F	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Missense_Mutation_p.S220F	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	220	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CACACCGGGGGAAAAAACAGC	0.507000													12	9					0	0	0.016723	0	0
ELSPBP1	64100	broad.mit.edu	37	19	48517439	48517439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:48517439G>A	uc002pht.2	+	3	237	c.82G>A	c.(82-84)GAA>AAA	p.E28K		NM_022142	NP_071425	Q96BH3	ESPB1_HUMAN	epididymal sperm binding protein 1 precursor	28	Fibronectin type-II 1.				single fertilization	extracellular region					0		all_cancers(25;8.7e-09)|all_lung(116;1.15e-06)|all_epithelial(76;1.17e-06)|Lung NSC(112;2.56e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000253)|all cancers(93;0.00129)|Epithelial(262;0.0314)|GBM - Glioblastoma multiforme(486;0.0606)		GATGCATGAGGAATGTGTCTT	0.448000													62	112					0	0	0.048971	0	0
HRC	3270	broad.mit.edu	37	19	49657828	49657828	+	Missense_Mutation	SNP	C	T	T	rs139799783		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:49657828C>T	uc002pmv.2	-	1	854	c.667G>A	c.(667-669)GAG>AAG	p.E223K		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	223	4 X tandem repeats, acidic.|2-4.|6 X approximate tandem repeats.				muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		TCCTCATCCTCTTCACTCCCA	0.363000													12	20					0	0	0.010729	0	0
FPR2	2358	broad.mit.edu	37	19	52272052	52272052	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:52272052G>A	uc002pxr.2	+	2	186	c.141G>A	c.(139-141)GTG>GTA	p.V47V	FPR2_uc002pxs.3_Silent_p.V47V|FPR2_uc010epf.2_Silent_p.V47V	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	47	Helical; Name=1; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						ATGGGCTTGTGATCTGGGTGG	0.557000													29	49					0	0	0.050027	0	0
ZNF160	90338	broad.mit.edu	37	19	53572028	53572028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:53572028G>A	uc010eqk.2	-	7	2175	c.1759C>T	c.(1759-1761)CAT>TAT	p.H587Y	ZNF160_uc002qaq.3_Missense_Mutation_p.H587Y|ZNF160_uc002qar.3_Missense_Mutation_p.H587Y	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	587	C2H2-type 12.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		TCTCCAGTATGAACTCTCCAA	0.413000													27	61					0	0	0.034045	0	0
PTPRH	5794	broad.mit.edu	37	19	55707890	55707890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:55707890C>T	uc002qjq.2	-	10	2330	c.2257G>A	c.(2257-2259)GGG>AGG	p.G753R	PTPRH_uc010esv.2_Missense_Mutation_p.G575R|PTPRH_uc002qjs.2_Missense_Mutation_p.G760R	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	753	Extracellular (Potential).				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		CTCCGCTCACCTGCACTCTCG	0.592000													21	44					0	0	0.018920	0	0
NLRP9	338321	broad.mit.edu	37	19	56244384	56244384	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:56244384G>A	uc002qly.2	-	2	841	c.813C>T	c.(811-813)CTC>CTT	p.L271L		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	271	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		ATGCAATAAGGAGAGAGGATT	0.408000													21	28					0	0	0.055883	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58596361	58596361	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr19:58596361G>A	uc002qri.2	-	7	1533	c.1224C>T	c.(1222-1224)TCC>TCT	p.S408S	ZSCAN18_uc002qrj.3_Silent_p.S407S|ZSCAN18_uc010yhs.1_Silent_p.S272S|ZSCAN18_uc002qrh.2_Silent_p.S408S|ZSCAN18_uc010yht.1_Silent_p.S464S|ZSCAN18_uc002qrk.1_3'UTR|ZSCAN18_uc002qrl.2_3'UTR	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	408					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GCTTCCCGCGGGACAAGCCCG	0.726000													6	7					0	0	0.038147	0	0
GPR113	165082	broad.mit.edu	37	2	26534719	26534719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:26534719G>A	uc002rhe.3	-	11	1877	c.1877C>T	c.(1876-1878)TCC>TTC	p.S626F	GPR113_uc010yky.1_Missense_Mutation_p.S557F|GPR113_uc002rhb.1_Missense_Mutation_p.S229F|GPR113_uc010eyk.1_Missense_Mutation_p.S427F|GPR113_uc002rhc.1_Missense_Mutation_p.S229F|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	626	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGTAGGGAAGGAGATGCTGTA	0.567000													17	15					0	0	0.028581	0	0
PKDCC	91461	broad.mit.edu	37	2	42281233	42281233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:42281233G>A	uc002rsg.2	+	3	999	c.820G>A	c.(820-822)GTC>ATC	p.V274I		NM_138370	NP_612379	Q504Y2	PKDCC_HUMAN	protein kinase-like protein SgK493	274	Protein kinase.				cell differentiation|embryonic digestive tract development|lung alveolus development|negative regulation of Golgi to plasma membrane protein transport|ossification|palate development|positive regulation of bone mineralization|positive regulation of chondrocyte differentiation|protein transport	Golgi apparatus	ATP binding|protein kinase activity			breast(1)	1						ACTGGGCTCCGTCACTCTGCT	0.632000													11	55					0	0	0.010729	0	0
FSHR	2492	broad.mit.edu	37	2	49191042	49191042	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:49191042C>T	uc002rww.2	-	10	992	c.918G>A	c.(916-918)CAG>CAA	p.Q306Q	FSHR_uc002rwx.2_Silent_p.Q244Q|FSHR_uc010fbn.2_Silent_p.Q280Q	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	306	Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GACCCCTAGCCTGAGTCATAT	0.388000									Gonadal_Dysgenesis_46_XX				47	130					0	0	0.048971	0	0
BCL11A	53335	broad.mit.edu	37	2	60688589	60688589	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:60688589C>T	uc002sae.1	-	4	1686	c.1458G>A	c.(1456-1458)GAG>GAA	p.E486E	BCL11A_uc002sab.2_Silent_p.E486E|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Silent_p.E155E|BCL11A_uc010ypj.1_Silent_p.E452E|BCL11A_uc002sad.1_Silent_p.E334E|BCL11A_uc002saf.1_Silent_p.E452E	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	486	Glu-rich.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			cctcctcttcctcctcgtccc	0.418000			T	IGH@	B-CLL								99	81					0	0	0.048971	0	0
HK2	3099	broad.mit.edu	37	2	75108959	75108959	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:75108959G>A	uc002snd.2	+	11	3618	c.1692G>A	c.(1690-1692)CAG>CAA	p.Q564Q		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	564	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						CCATCCCGCAGGAGGTCATGC	0.617000													14	22					0	0	0.016723	0	0
Unknown	0	broad.mit.edu	37	2	90199118	90199118	+	RNA	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:90199118C>T	uc010fhm.2	+	24		c.3249C>T								Parts of antibodies, mostly variable regions.																		GGACAGATTTCACTCTCACTA	0.488000													116	379					0	0	0.048971	0	0
MFSD9	84804	broad.mit.edu	37	2	103335015	103335015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:103335015G>A	uc002tcb.2	-	6	1357	c.1289C>T	c.(1288-1290)TCG>TTG	p.S430L	MFSD9_uc010fja.2_RNA	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing	430					transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						GGCAACCCCCGAGAGGAGAGG	0.637000													20	32					0	0	0.049695	0	0
MFSD9	84804	broad.mit.edu	37	2	103353173	103353174	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:103353173_103353174CC>TT	uc002tcb.2	-	1	164_165	c.96_97GG>AA	c.(94-99)GCGGAG>GCAAAG	p.E33K	TMEM182_uc002tcc.3_5'Flank|TMEM182_uc002tcd.3_5'Flank|MFSD9_uc010fja.2_RNA	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing	33					transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						TCGGCAGCCTCCGCCTCGGTTC	0.658000													35	19					0	0	0.004672	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107423199	107423199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:107423199C>T	uc002tdq.2	-	6	1644	c.1525G>A	c.(1525-1527)GTG>ATG	p.V509M	ST6GAL2_uc002tdr.2_Missense_Mutation_p.V509M	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	509	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GGAAGAACCACCTTGCCCTTG	0.562000													78	61					0	0	0.048971	0	0
ANAPC1	64682	broad.mit.edu	37	2	112608394	112608394	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:112608394T>C	uc002thi.2	-	14	1856	c.1609A>G	c.(1609-1611)ACT>GCT	p.T537A		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	537					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						GGCTTTGGAGTACTAACGCCA	0.433000													3	84					0	0	0.004672	0	0
DBI	1622	broad.mit.edu	37	2	120125788	120125788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:120125788G>A	uc002tlv.2	+	2	158	c.34G>A	c.(34-36)GAG>AAG	p.E12K	C2orf76_uc002tls.2_5'Flank|C2orf76_uc010flf.1_5'Flank|C2orf76_uc010yyg.1_5'Flank|C2orf76_uc002tlt.2_5'Flank|C2orf76_uc002tlu.2_5'Flank|DBI_uc010yyh.1_Missense_Mutation_p.E29K|DBI_uc010yyi.1_Missense_Mutation_p.E29K|DBI_uc010yyj.1_RNA|DBI_uc010yyk.1_Missense_Mutation_p.E54K|DBI_uc010yyl.1_Missense_Mutation_p.E29K|DBI_uc010yym.1_Missense_Mutation_p.E22K|DBI_uc010yyn.1_Missense_Mutation_p.E29K|DBI_uc002tlw.2_Missense_Mutation_p.E29K|DBI_uc010yyo.1_RNA|DBI_uc002tlx.2_Missense_Mutation_p.E13K|DBI_uc010yyp.1_5'Flank	NM_001079862	NP_001073331	P07108	ACBP_HUMAN	diazepam binding inhibitor isoform 3	12	ACB.				transport		benzodiazepine receptor binding|fatty-acyl-CoA binding				0						AGCTGCAGAGGAGGTTAGGCA	0.507000													63	48					0	0	0.048971	0	0
GLI2	2736	broad.mit.edu	37	2	121745822	121745822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:121745822G>A	uc010flp.2	+	13	2362	c.2332G>A	c.(2332-2334)GGG>AGG	p.G778R	GLI2_uc002tmq.1_Missense_Mutation_p.G450R|GLI2_uc002tmr.1_Missense_Mutation_p.G433R|GLI2_uc002tmt.3_Missense_Mutation_p.G450R|GLI2_uc002tmu.3_Missense_Mutation_p.G433R	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	778					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				Tgggggcggcgggcccgcggg	0.587000													14	9					0	0	0.024245	0	0
UGGT1	56886	broad.mit.edu	37	2	128938530	128938530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:128938530C>T	uc002tps.2	+	36	4145	c.3967C>T	c.(3967-3969)CGG>TGG	p.R1323W	UGGT1_uc002tpr.2_Missense_Mutation_p.R1299W	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	1323	Glucosyltransferase (By similarity).				'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						CAAATGGCCCCGGTGGCTTCA	0.388000													31	48					0	0	0.041601	0	0
FAM123C	205147	broad.mit.edu	37	2	131519903	131519903	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:131519903C>T	uc002trw.2	+	2	448	c.258C>T	c.(256-258)TTC>TTT	p.F86F	FAM123C_uc010fmv.2_Silent_p.F86F|FAM123C_uc010fms.1_Silent_p.F86F|FAM123C_uc010fmt.1_Silent_p.F86F|FAM123C_uc010fmu.1_Silent_p.F86F	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	86										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GAGCCACCTTCAAACCGGTGC	0.652000													12	10					0	0	0.013537	0	0
THSD7B	80731	broad.mit.edu	37	2	137814319	137814319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:137814319G>A	uc002tva.1	+	2	376	c.376G>A	c.(376-378)GAA>AAA	p.E126K	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.E16K	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GGTTGCAAATGAAATATGCGA	0.522000													37	97					0	0	0.019004	0	0
SCN9A	6335	broad.mit.edu	37	2	167168163	167168163	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:167168163G>T	uc010fpl.2	-	2	445	c.104C>A	c.(103-105)CCC>CAC	p.P35H		NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	35						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TTCTTCTTTGGGTTCCTTTGA	0.473000													32	81					1.62565e-12	1.8747e-12	0.050027	1	0
TTN	7273	broad.mit.edu	37	2	179594029	179594029	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:179594029C>G	uc010zfg.1	-	61	15346	c.15122G>C	c.(15121-15123)AGA>ACA	p.R5041T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R1702T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5968							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGGCAACTCTAGTACTGCA	0.403000													66	54					0	0	0.048971	0	0
TTN	7273	broad.mit.edu	37	2	179600389	179600389	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:179600389G>A	uc010zfg.1	-	47	11276	c.11052C>T	c.(11050-11052)CTC>CTT	p.L3684L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L345L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4611							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCCTGGGGGGAGTTTTTGCC	0.428000													36	23					0	0	0.023175	0	0
ITGA4	3676	broad.mit.edu	37	2	182339762	182339762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:182339762C>T	uc002unu.2	+	3	1158	c.395C>T	c.(394-396)TCC>TTC	p.S132F	ITGA4_uc010zfl.1_Missense_Mutation_p.S132F	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	132	FG-GAP 2.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GTCACACTTTCCAGACAGCCA	0.443000													12	34					0	0	0.020292	0	0
SATB2	23314	broad.mit.edu	37	2	200213622	200213622	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:200213622C>T	uc002uuy.1	-	7	1792	c.975G>A	c.(973-975)CGG>CGA	p.R325R	SATB2_uc010fsq.1_Silent_p.R207R|SATB2_uc002uuz.1_Silent_p.R325R|SATB2_uc002uva.1_Silent_p.R325R|SATB2_uc002uvb.1_Silent_p.R68R	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	325						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GAGCCAGGAGCCGGCTAACGG	0.532000													20	112					0	0	0.014323	0	0
IDH1	3417	broad.mit.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	A	A	rs121913499		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:209113113G>A	uc002vcs.2	-	4	640	c.394C>T	c.(394-396)CGT>TGT	p.R132C	IDH1_uc002vct.2_Missense_Mutation_p.R132C|IDH1_uc002vcu.2_Missense_Mutation_p.R132C	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TAAGCATGACGACCTATGATG	0.398000			Mis		gliobastoma 								33	47					0	0	0.064281	0	0
PECR	55825	broad.mit.edu	37	2	216904055	216904055	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:216904055C>T	uc002vft.2	-	8	923	c.855G>A	c.(853-855)GGG>GGA	p.G285G	PECR_uc010zjq.1_RNA|PECR_uc002vfr.2_Silent_p.G147G|PECR_uc002vfs.2_Silent_p.G139G	NM_018441	NP_060911	Q9BY49	PECR_HUMAN	peroxisomal trans-2-enoyl-CoA reductase	285					fatty acid biosynthetic process|regulation of apoptosis	peroxisome	binding|trans-2-enoyl-CoA reductase (NADPH) activity				0		Renal(323;0.0327)		Epithelial(149;3.8e-06)|all cancers(144;0.000272)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Adenine(DB00173)	CAGAAAGGTCCCCTGCTCCCT	0.483000													51	102					0	0	0.048971	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883081	228883081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:228883081G>A	uc002vpq.2	-	7	2536	c.2489C>T	c.(2488-2490)TCC>TTC	p.S830F	SPHKAP_uc002vpp.2_Missense_Mutation_p.S830F|SPHKAP_uc010zlx.1_Missense_Mutation_p.S830F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	830						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TATTTCCTTGGAGGATGTTGT	0.488000													41	89					0	0	0.025465	0	0
L3MBTL	26013	broad.mit.edu	37	20	42169606	42169606	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr20:42169606G>A	uc010zwh.1	+	22	2407	c.2361G>A	c.(2359-2361)GGG>GGA	p.G787G	L3MBTL_uc002xkl.2_Silent_p.G719G|L3MBTL_uc002xkm.2_3'UTR|L3MBTL_uc010ggl.2_3'UTR|L3MBTL_uc002xkn.1_Intron|L3MBTL_uc002xko.2_3'UTR|L3MBTL_uc002xkp.2_Silent_p.G107G|SGK2_uc002xkq.1_Intron	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	Error:Variant_position_missing_in_Q9Y468_after_alignment					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			ATGTATCTGGGAAGACTCTAG	0.567000													17	43					0	0	0.033300	0	0
C20orf165	128497	broad.mit.edu	37	20	44515315	44515315	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr20:44515315C>T	uc002xqf.2	-	2	534	c.525G>A	c.(523-525)GAG>GAA	p.E175E		NM_080608	NP_542175	Q9BR10	CT165_HUMAN	chromosome 20 open reading frame 165	175						integral to membrane					0		Myeloproliferative disorder(115;0.0122)				AGATCAGGTCCTCTTCCCGAA	0.647000													77	47					0	0	0.048971	0	0
CDH22	64405	broad.mit.edu	37	20	44869728	44869728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr20:44869728G>A	uc002xrm.2	-	2	825	c.424C>T	c.(424-426)CGC>TGC	p.R142C	CDH22_uc010ghk.1_Missense_Mutation_p.R142C	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	142	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				TTGGTGGCGCGATCCCGAGCC	0.607000													66	38					0	0	0.048971	0	0
SLC2A10	81031	broad.mit.edu	37	20	45353909	45353909	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr20:45353909C>T	uc002xsl.2	+	2	331	c.234C>T	c.(232-234)ATC>ATT	p.I78I		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	78	Helical; Name=3; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGCAAGCCATCCTCGGGAGCA	0.662000													22	43					0	0	0.024334	0	0
SYCP2	10388	broad.mit.edu	37	20	58442829	58442829	+	Silent	SNP	T	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr20:58442829T>C	uc002yaz.2	-	38	4201	c.4062A>G	c.(4060-4062)GCA>GCG	p.A1354A		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	1354					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			TCTCTATCCCTGCAAATTCAT	0.323000													3	64					0	0	0.004672	0	0
TPTE	7179	broad.mit.edu	37	21	10920164	10920164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr21:10920164C>T	uc002yip.1	-	19	1458	c.1090G>A	c.(1090-1092)GAA>AAA	p.E364K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.E346K|TPTE_uc002yir.1_Missense_Mutation_p.E326K|TPTE_uc010gkv.1_Missense_Mutation_p.E226K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	364	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TACAGGCTTTCCTACAAAAAA	0.378000													6	110					0	0	0.038147	0	0
DSCAM	1826	broad.mit.edu	37	21	41516578	41516578	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr21:41516578G>A	uc002yyq.1	-	17	3551	c.3099C>T	c.(3097-3099)TTC>TTT	p.F1033F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1033	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGTTGAATTGGAAGTTACCCC	0.483000													57	36					0	0	0.048971	0	0
RRP1	8568	broad.mit.edu	37	21	45213219	45213219	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr21:45213219C>T	uc002zds.2	+	4	387	c.294C>T	c.(292-294)GCC>GCT	p.A98A	RRP1_uc011aez.1_Silent_p.A98A|RRP1_uc010gpk.1_5'UTR|RRP1_uc010gpl.1_5'UTR	NM_003683	NP_003674	P56182	RRP1_HUMAN	ribosomal RNA processing 1 homolog	98					rRNA processing	nucleolus|preribosome, small subunit precursor					0				COAD - Colon adenocarcinoma(84;0.00753)|Colorectal(79;0.0157)|STAD - Stomach adenocarcinoma(101;0.171)		TCCTTCAGGCCTTCTGGCAGA	0.597000													47	125					0	0	0.048971	0	0
MRPL40	64976	broad.mit.edu	37	22	19420819	19420819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:19420819G>A	uc002zpg.2	+	2	127	c.85G>A	c.(85-87)GAG>AAG	p.E29K	HIRA_uc002zpf.1_5'Flank|HIRA_uc011agx.1_5'Flank|HIRA_uc010grn.1_5'Flank|HIRA_uc010gro.1_Intron|HIRA_uc010grp.2_Intron|MRPL40_uc002zph.2_5'UTR	NM_003776	NP_003767	Q9NQ50	RM40_HUMAN	mitochondrial ribosomal protein L40 precursor	29					anatomical structure morphogenesis	mitochondrial ribosome|nucleus					0	Colorectal(54;0.0993)					GCAGCTTAGAGAGACTCACCA	0.408000													17	21					0	0	0.055883	0	0
GGT5	2687	broad.mit.edu	37	22	24622608	24622608	+	Silent	SNP	C	T	T	rs58692741		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:24622608C>T	uc002zzo.3	-	7	1446	c.1029G>A	c.(1027-1029)CCG>CCA	p.P343P	GGT5_uc002zzp.3_Silent_p.P343P|GGT5_uc002zzr.3_Silent_p.P311P|GGT5_uc002zzq.3_Silent_p.P311P|GGT5_uc011ajm.1_Silent_p.P266P|GGT5_uc011ajn.1_RNA	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	343	Extracellular (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						CCTGGAGCTTCGGGTGGCTTC	0.627000													26	21					0	0	0.018920	0	0
MYO18B	84700	broad.mit.edu	37	22	26423254	26423254	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:26423254A>C	uc003abz.1	+	43	7564	c.7314A>C	c.(7312-7314)AAA>AAC	p.K2438N	MYO18B_uc003aca.1_Missense_Mutation_p.K2319N|MYO18B_uc010guy.1_Missense_Mutation_p.K2320N|MYO18B_uc010guz.1_Missense_Mutation_p.K2318N|MYO18B_uc011aka.1_Missense_Mutation_p.K1592N|MYO18B_uc011akb.1_Missense_Mutation_p.K1951N|MYO18B_uc010gva.1_Missense_Mutation_p.K421N|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2438						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCAAGACCAAAGTGGACTTCG	0.552000													35	62					0	0	0.025465	0	0
SEC14L4	284904	broad.mit.edu	37	22	30887843	30887843	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:30887843G>A	uc003aid.2	-	10	989	c.889C>T	c.(889-891)CTG>TTG	p.L297L	SEC14L4_uc011akz.1_Silent_p.L297L|SEC14L4_uc003aie.2_Silent_p.L282L|SEC14L4_uc003aif.2_Silent_p.L243L	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	297	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	CCCGGGAACAGGATCTCGTTC	0.657000													10	13					0	0	0.008291	0	0
APOL5	80831	broad.mit.edu	37	22	36113929	36113929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:36113929G>A	uc003aof.2	+	1	11	c.11G>A	c.(10-12)GGC>GAC	p.G4D		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	4					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						ATGCCATGTGGCAAACAAGGA	0.373000													14	12					0	0	0.038395	0	0
DMC1	11144	broad.mit.edu	37	22	38934376	38934377	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:38934376_38934377GA>AT	uc003avz.1	-	11	873_874	c.698_699TC>AT	c.(697-699)TTC>TAT	p.F233Y	DMC1_uc011anv.1_Missense_Mutation_p.F178Y	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	233		ssDNA.			reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					CACGGCCACTGAAATCCACTCG	0.376000								Homologous_recombination					32	33					0	0	0.004672	0	0
GTPBP1	9567	broad.mit.edu	37	22	39122010	39122010	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:39122010G>A	uc003awg.2	+	7	1228	c.1074_splice	c.e7-1	p.R358_splice		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1						immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					CCTCTGCTTAGGATGTGCCCG	0.567000													63	108					0	0	0.048971	0	0
NFAM1	150372	broad.mit.edu	37	22	42793927	42793927	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:42793927C>T	uc003bcn.3	-	4	638	c.600G>A	c.(598-600)AGG>AGA	p.R200R		NM_145912	NP_666017	Q8NET5	NFAM1_HUMAN	NFAT activation molecule 1 precursor	200	Cytoplasmic (Potential).				B cell differentiation|inflammatory response|intracellular signal transduction|positive regulation of B cell receptor signaling pathway|positive regulation of cytokine production|positive regulation of sequence-specific DNA binding transcription factor activity	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity				0						CTGGGCACTTCCTGGTGGGGT	0.627000													32	48					0	0	0.054565	0	0
SMC1B	27127	broad.mit.edu	37	22	45798262	45798263	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:45798262_45798263CC>TT	uc003bgc.2	-	5	856_857	c.804_805GG>AA	c.(802-807)AAGGAA>AAAAAA	p.E269K	SMC1B_uc003bgd.2_Missense_Mutation_p.E269K|SMC1B_uc003bge.1_Missense_Mutation_p.E52K	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	269	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		ATTCCATGTTCCTTTTTCCTGG	0.337000													20	47					0	0	0.004672	0	0
CELSR1	9620	broad.mit.edu	37	22	46859638	46859638	+	Silent	SNP	G	A	A	rs142490459	byFrequency	TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr22:46859638G>A	uc003bhw.1	-	2	4149	c.4149C>T	c.(4147-4149)GGC>GGT	p.G1383G		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1383	Extracellular (Potential).|EGF-like 2; calcium-binding.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		AGGTGTAGCCGCCCTCGCGGC	0.682000													9	15					0	0	0.058154	0	0
KCNH8	131096	broad.mit.edu	37	3	19491795	19491795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:19491795G>A	uc003cbk.1	+	9	1768	c.1573G>A	c.(1573-1575)GAG>AAG	p.E525K	KCNH8_uc011awe.1_Missense_Mutation_p.E525K|KCNH8_uc010hex.1_5'UTR|KCNH8_uc011awf.1_Intron	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	525	Cytoplasmic (Potential).			E -> Q (in Ref. 3; BAD92290).		integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						AGATTCAAATGAGGTAATGTT	0.393000													20	29					0	0	0.055883	0	0
TRANK1	9881	broad.mit.edu	37	3	36893786	36893786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:36893786G>A	uc003cgj.2	-	4	3120	c.2818C>T	c.(2818-2820)CCA>TCA	p.P940S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1490					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AAAGATTCTGGGAAATAGAAC	0.433000													8	7					0	0	0.047766	0	0
CTNNB1	1499	broad.mit.edu	37	3	41277853	41277853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:41277853C>T	uc010hia.1	+	13	1973	c.1817C>T	c.(1816-1818)CCC>CTC	p.P606L	CTNNB1_uc003ckp.2_Missense_Mutation_p.P606L|CTNNB1_uc003ckq.2_Missense_Mutation_p.P606L|CTNNB1_uc003ckr.2_Missense_Mutation_p.P606L|CTNNB1_uc011azf.1_Missense_Mutation_p.P599L|CTNNB1_uc011azg.1_Missense_Mutation_p.P534L|CTNNB1_uc003cks.2_3'UTR|CTNNB1_uc003ckt.1_Missense_Mutation_p.P41L	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	606	ARM 11.				adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding		CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	CTTTATTCTCCCATTGAAAAC	0.453000		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				65	88					0	0	0.048971	0	0
PRSS42	339906	broad.mit.edu	37	3	46874578	46874578	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:46874578G>A	uc011bap.1	-	3	490	c.490C>T	c.(490-492)CGA>TGA	p.R164*	PRSS42_uc003cqj.2_Nonsense_Mutation_p.R60*	NM_182702	NP_874361	Q7Z5A4	PRS42_HUMAN	testis serine protease 2 precursor	164	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			pancreas(1)	1						AGGTCATTTCGAATGGTTGTA	0.458000													30	43					0	0	0.037714	0	0
COL7A1	1294	broad.mit.edu	37	3	48613849	48613849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:48613849C>T	uc003ctz.2	-	69	5757	c.5756G>A	c.(5755-5757)GGA>GAA	p.G1919E		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1919	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCCTTTGGATCCAGTCTCCCC	0.612000													13	13					0	0	0.016723	0	0
RNF123	63891	broad.mit.edu	37	3	49753392	49753393	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:49753392_49753393CC>TT	uc003cxh.2	+	33	3374_3375	c.3288_3289CC>TT	c.(3286-3291)TTCCTT>TTTTTT	p.L1097F	RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	1097						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		CTGAGATATTCCTTGACTGGAC	0.589000													30	41					0	0	0.004672	0	0
SEMA3G	56920	broad.mit.edu	37	3	52475703	52475703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:52475703C>T	uc003dea.1	-	6	554	c.554G>A	c.(553-555)GGG>GAG	p.G185E		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	185	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GTACAGCTCCCCGTCTGGGGT	0.662000													21	36					0	0	0.055883	0	0
CLSTN2	64084	broad.mit.edu	37	3	140265476	140265476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:140265476G>A	uc003etn.2	+	10	1817	c.1627G>A	c.(1627-1629)GAA>AAA	p.E543K	CLSTN2_uc003etm.2_Missense_Mutation_p.E543K	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	543	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGCCTGCAAGGAAGGGCTGGA	0.522000										HNSCC(16;0.037)			16	27					0	0	0.033300	0	0
ZBBX	79740	broad.mit.edu	37	3	167023494	167023494	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:167023494C>T	uc003fep.2	-	17	1985	c.1662G>A	c.(1660-1662)TTG>TTA	p.L554L	ZBBX_uc011bpc.1_Silent_p.L554L|ZBBX_uc003feq.2_Silent_p.L525L	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	554						intracellular	zinc ion binding			ovary(2)	2						TGCTCAATTCCAAGGATTCTT	0.323000													18	27					0	0	0.055883	0	0
TTC14	151613	broad.mit.edu	37	3	180322733	180322733	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr3:180322733C>T	uc003fkk.2	+	6	927	c.795C>T	c.(793-795)TTC>TTT	p.F265F	TTC14_uc003fkl.2_Silent_p.F265F|TTC14_uc003fkm.2_Silent_p.F265F	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	265							RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			TAGTTGAATTCCTTCTAGAAA	0.368000													10	16					0	0	0.008291	0	0
TACC3	10460	broad.mit.edu	37	4	1742647	1742647	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:1742647G>A	uc003gdo.2	+	13	2265	c.2157G>A	c.(2155-2157)GAG>GAA	p.E719E	TACC3_uc003gdp.2_Silent_p.E359E|TACC3_uc010ica.2_Silent_p.E140E	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	719	Potential.					centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			ACTCCATGGAGAAGTCCTTCT	0.478000													32	40					0	0	0.041601	0	0
MFSD10	10227	broad.mit.edu	37	4	2933366	2933366	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:2933366G>A	uc003gfw.2	-	8	1253	c.939C>T	c.(937-939)TTC>TTT	p.F313F	MFSD10_uc003gfv.2_Silent_p.F3F|MFSD10_uc003gfx.2_Silent_p.F137F|MFSD10_uc003gfz.2_Silent_p.F313F|MFSD10_uc003gfy.2_RNA|MFSD10_uc003gga.2_Intron|MFSD10_uc003ggb.1_Silent_p.F313F|MFSD10_uc003ggc.2_Silent_p.F313F	NM_001120	NP_001111	Q14728	MFS10_HUMAN	major facilitator superfamily domain containing	313	Helical; (Potential).				apoptosis	integral to membrane	tetracycline transporter activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		GGCCGATGAGGAAAAACATCT	0.682000													10	9					0	0	0.058154	0	0
RBM47	54502	broad.mit.edu	37	4	40440476	40440476	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:40440476G>A	uc003gvc.2	-	4	1145	c.435C>T	c.(433-435)TGC>TGT	p.C145C	RBM47_uc003gvd.2_Silent_p.C145C|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.C107C|RBM47_uc003gvg.1_Silent_p.C145C	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	145	RRM 1.					nucleus	nucleotide binding|RNA binding			breast(3)	3						CCACGCTGCAGCACACGCCGA	0.632000													20	23					0	0	0.062417	0	0
ATP8A1	10396	broad.mit.edu	37	4	42602500	42602500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:42602500C>T	uc003gwr.2	-	6	677	c.445G>A	c.(445-447)GAA>AAA	p.E149K	ATP8A1_uc003gws.2_Missense_Mutation_p.E149K|ATP8A1_uc011byz.1_Missense_Mutation_p.E149K	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	149	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	CATACCTTTTCCCAGTGGACA	0.328000													28	37					0	0	0.059317	0	0
GABRG1	2565	broad.mit.edu	37	4	46066470	46066470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:46066470C>T	uc003gxb.2	-	5	765	c.613G>A	c.(613-615)GAA>AAA	p.E205K		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	205	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CTTGAAAATTCCAGTGGACAG	0.274000													42	50					0	0	0.048971	0	0
CORIN	10699	broad.mit.edu	37	4	47746434	47746434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:47746434C>T	uc003gxm.2	-	5	877	c.784G>A	c.(784-786)GAA>AAA	p.E262K	CORIN_uc011bzf.1_Missense_Mutation_p.E123K|CORIN_uc011bzg.1_Missense_Mutation_p.E195K|CORIN_uc011bzh.1_Missense_Mutation_p.E262K|CORIN_uc011bzi.1_Missense_Mutation_p.E262K|CORIN_uc003gxn.3_Missense_Mutation_p.E262K	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	262	Extracellular (Potential).				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TTTCCGTTTTCCTGCTGAGGT	0.308000													48	68					0	0	0.048971	0	0
KIT	3815	broad.mit.edu	37	4	55564559	55564559	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:55564559G>A	uc010igr.2	+	3	534	c.447G>A	c.(445-447)AAG>AAA	p.K149K	KIT_uc010igs.2_Silent_p.K149K	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	149	Extracellular (Potential).|Ig-like C2-type 2.				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	ATTCCCTCAAGGGGTGCCAGG	0.532000		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				19	24					0	0	0.055883	0	0
KDR	3791	broad.mit.edu	37	4	55961074	55961074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:55961074G>A	uc003has.2	-	21	3168	c.2866C>T	c.(2866-2868)CCT>TCT	p.P956S	KDR_uc003hat.1_Missense_Mutation_p.P956S	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	956	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	AGATCCACAGGGATTGCTCCA	0.468000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			25	51					0	0	0.016522	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69093746	69093746	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:69093746G>A	uc003hdw.3	-	10	1270	c.1134C>T	c.(1132-1134)ATC>ATT	p.I378I		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	378	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CAAGATGCCAGATATTTCTGG	0.368000													21	16					0	0	0.055883	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146547	70146547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:70146547C>T	uc003hej.2	+	1	331	c.329C>T	c.(328-330)TCA>TTA	p.S110L	UGT2B28_uc010ihr.2_Missense_Mutation_p.S110L	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	110					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	TTATATTTTTCACAAGAACAA	0.294000													45	75					0	0	0.048971	0	0
UGT2A1	10941	broad.mit.edu	37	4	70512848	70512848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:70512848C>T	uc003hem.3	-	1	578	c.515G>A	c.(514-516)AGG>AAG	p.R172K	UGT2A1_uc011caq.1_Missense_Mutation_p.R172K|UGT2A1_uc010ihu.2_Missense_Mutation_p.R172K|UGT2A1_uc010iht.2_Missense_Mutation_p.R172K	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	172	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						TGGAGAAAACCTCAAGGAGTA	0.423000													22	20					0	0	0.062417	0	0
TIGD2	166815	broad.mit.edu	37	4	90034207	90034207	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:90034207T>C	uc003hsk.2	+	1	240	c.82T>C	c.(82-84)TTC>CTC	p.F28L	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	28	H-T-H motif (By similarity).|HTH psq-type.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		AGGCATCTCTTTCAAAAAACT	0.353000													22	45					0	0	0.055883	0	0
CFI	3426	broad.mit.edu	37	4	110662237	110662237	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:110662237T>A	uc003hzr.3	-	13	1772	c.1564A>T	c.(1564-1566)AAA>TAA	p.K522*	CFI_uc003hzq.2_Nonsense_Mutation_p.K319*|CFI_uc011cft.1_Nonsense_Mutation_p.K530*|CFI_uc003hzs.3_Nonsense_Mutation_p.K515*	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	522	Peptidase S1.		K -> T (in AHUS3).		complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		GAGTCCCCTTTACAGGCATCG	0.453000													75	113					0	0	0.048971	0	0
NDST4	64579	broad.mit.edu	37	4	115891717	115891717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:115891717C>T	uc003ibu.2	-	4	1769	c.1090G>A	c.(1090-1092)GAT>AAT	p.D364N	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	364	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		AAAAGGTCATCTCCTTCATCT	0.378000													15	11					0	0	0.033300	0	0
FAT4	79633	broad.mit.edu	37	4	126389861	126389861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:126389861G>A	uc003ifj.3	+	11	12094	c.12094G>A	c.(12094-12096)GAA>AAA	p.E4032K	FAT4_uc011cgp.1_Missense_Mutation_p.E2295K|FAT4_uc003ifi.1_Missense_Mutation_p.E1510K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4032	Laminin G-like 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGAAATTGCCGAAGAAAGACT	0.413000													32	30					0	0	0.041601	0	0
ZNF827	152485	broad.mit.edu	37	4	146807227	146807227	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:146807227G>A	uc003ikn.2	-	4	1398	c.1350C>T	c.(1348-1350)CTC>CTT	p.L450L	ZNF827_uc003ikm.2_Silent_p.L450L|ZNF827_uc010iox.2_Silent_p.L100L	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	450	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					AACGCATGTGGAGTTTCAGGC	0.552000													23	12					0	0	0.014323	0	0
NPY2R	4887	broad.mit.edu	37	4	156136099	156136099	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:156136099C>T	uc003ioq.2	+	2	1503	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	NPY2R_uc003ior.2_Silent_p.F336F	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	336	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GAAAGGCTTTCCTCTCGGCCT	0.498000													32	61					0	0	0.054565	0	0
NPY1R	4886	broad.mit.edu	37	4	164247100	164247100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:164247100G>A	uc003iqm.1	-	2	873	c.607C>T	c.(607-609)CCA>TCA	p.P203S	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	203	Extracellular (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GAGTCCGATGGAAATTGATCA	0.383000													10	15					0	0	0.008291	0	0
NPY5R	4889	broad.mit.edu	37	4	164271957	164271957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:164271957C>T	uc003iqn.2	+	4	714	c.532C>T	c.(532-534)CAC>TAC	p.H178Y		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	178	Extracellular (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				TCCAGTGTTTCACAGTCTTGT	0.413000													92	101					0	0	0.048971	0	0
TKTL2	84076	broad.mit.edu	37	4	164394716	164394716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr4:164394716C>T	uc003iqp.3	-	1	332	c.171G>A	c.(169-171)ATG>ATA	p.M57I		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	57						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GTTTATACTTCATCGTGTGGA	0.577000													20	17					0	0	0.043863	0	0
CTNND2	1501	broad.mit.edu	37	5	11022887	11022887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:11022887C>T	uc003jfa.1	-	17	3138	c.2993G>A	c.(2992-2994)GGA>GAA	p.G998E	CTNND2_uc010itt.2_Missense_Mutation_p.G907E|CTNND2_uc011cmy.1_Missense_Mutation_p.G661E|CTNND2_uc011cmz.1_Missense_Mutation_p.G565E|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.G590E	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	998	ARM 9.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TTACTTATCTCCTTTGCTTTT	0.483000													30	29					0	0	0.050027	0	0
PRDM9	56979	broad.mit.edu	37	5	23523410	23523410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:23523410G>A	uc003jgo.2	+	9	1075	c.893G>A	c.(892-894)GGG>GAG	p.G298E		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	298	SET.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ATCACCAAGGGGAGAAACTGC	0.438000										HNSCC(3;0.000094)			37	51					0	0	0.030466	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049047	36049047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:36049047G>A	uc003jjz.1	-	4	880	c.787C>T	c.(787-789)CCC>TCC	p.P263S	UGT3A2_uc011cos.1_Missense_Mutation_p.P229S|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	263	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACAGTGTTGGGAAGCAGAGGT	0.448000													26	31					0	0	0.024334	0	0
NIPBL	25836	broad.mit.edu	37	5	37049280	37049280	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:37049280C>T	uc003jkl.3	+	40	7330	c.6831C>T	c.(6829-6831)TCC>TCT	p.S2277S	NIPBL_uc003jkk.3_Silent_p.S2277S|NIPBL_uc003jkn.2_5'Flank	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2277					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TGAGTAGTTCCATCATGCAGC	0.403000													45	67					0	0	0.045515	0	0
LIFR	3977	broad.mit.edu	37	5	38523673	38523673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:38523673C>T	uc010ive.1	-	5	741	c.409G>A	c.(409-411)GAT>AAT	p.D137N	LIFR_uc003jli.2_Missense_Mutation_p.D137N	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	137	Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TCTGGAGTATCTGGAATTAAG	0.338000			T	PLAG1	salivary adenoma								34	53					0	0	0.023175	0	0
DAB2	1601	broad.mit.edu	37	5	39383036	39383036	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:39383036T>A	uc003jlx.2	-	10	1556	c.1025A>T	c.(1024-1026)TAC>TTC	p.Y342F	DAB2_uc003jlw.2_Missense_Mutation_p.Y321F	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	342					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			CTGACCAAAGTAGTCAACATC	0.493000													28	40					0	0	0.034045	0	0
C7	730	broad.mit.edu	37	5	40947800	40947800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:40947800G>A	uc003jmh.2	+	8	949	c.835G>A	c.(835-837)GAG>AAG	p.E279K	C7_uc011cpn.1_Intron	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	279	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				ATTCTGGAAGGAGCTTTCCCA	0.453000													22	27					0	0	0.016522	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64766754	64766754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:64766754C>T	uc003jtp.2	-	3	1127	c.313G>A	c.(313-315)GAT>AAT	p.D105N	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	105					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GACACAAAATCTGTGTTGAGA	0.378000													28	38					0	0	0.027356	0	0
IQGAP2	10788	broad.mit.edu	37	5	75993836	75993836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:75993836C>T	uc003kek.2	+	33	4453	c.4231C>T	c.(4231-4233)CGT>TGT	p.R1411C	IQGAP2_uc011csv.1_Missense_Mutation_p.R907C|IQGAP2_uc003kel.2_Missense_Mutation_p.R907C|IQGAP2_uc010izw.1_Missense_Mutation_p.R112C	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	1411					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		AAGAATCTATCGTAAGCTTCG	0.353000													9	16					0	0	0.008291	0	0
PDE8B	8622	broad.mit.edu	37	5	76646915	76646915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:76646915G>A	uc003kfa.2	+	9	1088	c.1043G>A	c.(1042-1044)AGA>AAA	p.R348K	PDE8B_uc003kfb.2_Missense_Mutation_p.R328K|PDE8B_uc003kfc.2_Missense_Mutation_p.R348K|PDE8B_uc003kfd.2_Missense_Mutation_p.R301K|PDE8B_uc003kfe.2_Intron	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	348					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		TACTATGCCAGACGGAAATCC	0.507000													141	219					0	0	0.048971	0	0
CAMK4	814	broad.mit.edu	37	5	110710562	110710562	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:110710562C>T	uc011cvj.1	+	4	354	c.255C>T	c.(253-255)ATC>ATT	p.I85I	CAMK4_uc003kpf.2_Silent_p.I85I|CAMK4_uc010jbv.2_Intron	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	85	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		ACAAAAAAATCGTAAGAACTG	0.378000													17	24					0	0	0.033300	0	0
SNCAIP	9627	broad.mit.edu	37	5	121787008	121787008	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:121787008G>A	uc003ksw.1	+	10	2672	c.2466G>A	c.(2464-2466)GTG>GTA	p.V822V	SNCAIP_uc011cwl.1_Silent_p.V380V|SNCAIP_uc003ksx.1_Silent_p.V869V|SNCAIP_uc003ksy.1_Silent_p.V456V|SNCAIP_uc003ksz.1_Silent_p.V456V|SNCAIP_uc010jcu.2_Silent_p.V418V|SNCAIP_uc011cwm.1_Silent_p.V456V|SNCAIP_uc003kta.1_Silent_p.V454V|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Silent_p.V516V|SNCAIP_uc010jcx.1_Silent_p.V762V|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Silent_p.V338V	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	822					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AGGAGCCTGTGGTGCAGATGG	0.498000													25	41					0	0	0.021523	0	0
PITX1	5307	broad.mit.edu	37	5	134364509	134364509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:134364509C>T	uc010jea.2	-	3	1298	c.905G>A	c.(904-906)GGC>GAC	p.G302D	PITX1_uc011cxy.1_Missense_Mutation_p.G302D	NM_002653	NP_002644	P78337	PITX1_HUMAN	paired-like homeodomain transcription factor 1	302						nucleolus	sequence-specific DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	READ - Rectum adenocarcinoma(2;0.0607)		CGAGGCCGGGCCCTGCAGGCC	0.458000													5	14					0	0	0.014758	0	0
NRG2	9542	broad.mit.edu	37	5	139231313	139231313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:139231313G>A	uc003lex.1	-	9	1873	c.1648C>T	c.(1648-1650)CCA>TCA	p.P550S	NRG2_uc003lev.1_Missense_Mutation_p.P558S|NRG2_uc003lew.1_Missense_Mutation_p.P552S|NRG2_uc003ley.1_Missense_Mutation_p.P544S	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	550	Cytoplasmic (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACACATGCTGGGCTGTTGCAT	0.627000													23	30					0	0	0.021523	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307888	140307888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:140307888G>A	uc003lih.2	+	1	1587	c.1411G>A	c.(1411-1413)GAC>AAC	p.D471N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.D471N	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	471	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTTGCCCAGGACCCCGACCT	0.522000													52	64					0	0	0.048971	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348016	140348016	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:140348016G>A	uc003lii.2	+	1	1905	c.1665G>A	c.(1663-1665)GGG>GGA	p.G555G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.G555G	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	555	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGACAAGGGGAGCCCACCAC	0.512000													28	42					0	0	0.041601	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501839	140501839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:140501839G>A	uc003lip.1	+	1	259	c.259G>A	c.(259-261)GAG>AAG	p.E87K		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	87	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTTCTGAGGGAGAAACTAGA	0.522000													26	36					0	0	0.021523	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501962	140501962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:140501962C>T	uc003lip.1	+	1	382	c.382C>T	c.(382-384)CAC>TAC	p.H128Y		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	128	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CATAAATGATCACTCTCCAAT	0.418000													17	36					0	0	0.038395	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140723813	140723813	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:140723813G>A	uc003ljm.1	+	1	213	c.213G>A	c.(211-213)AGG>AGA	p.R71R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_5'UTR|PCDHGA3_uc011dap.1_Silent_p.R71R	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	71	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGAGGTAGGACGCAGCTTT	0.607000											OREG0016855	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	54	70					0	0	0.048971	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147023718	147023718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:147023718G>A	uc003loq.1	-	7	1509	c.1127C>T	c.(1126-1128)TCT>TTT	p.S376F	JAKMIP2_uc011dbx.1_Missense_Mutation_p.S334F|JAKMIP2_uc003lor.1_Missense_Mutation_p.S376F|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.S376F	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	376	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCATTCAGAGATTTTAATTT	0.373000													21	25					0	0	0.062417	0	0
MGAT4B	11282	broad.mit.edu	37	5	179225962	179225963	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr5:179225962_179225963GG>AA	uc003mks.2	-	11	1677_1678	c.1308_1309CC>TT	c.(1306-1311)ATCCGC>ATTTGC	p.R437C	MGAT4B_uc003mkp.2_Missense_Mutation_p.R291C|MGAT4B_uc003mkq.2_Missense_Mutation_p.P212L|MGAT4B_uc003mkr.2_Missense_Mutation_p.R452C|MIR1229_hsa-mir-1229|MI0006319_5'Flank	NM_014275	NP_055090	Q9UQ53	MGT4B_HUMAN	alpha-1,3-mannosyl-glycoprotein	437	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding				0	all_cancers(89;0.000201)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0525)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAGCGGAAGCGGATGAAGTCCC	0.629000													20	54					0	0	0.004672	0	0
IRF4	3662	broad.mit.edu	37	6	398876	398876	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:398876A>G	uc003msz.3	+	6	799	c.686A>G	c.(685-687)CAG>CGG	p.Q229R	IRF4_uc010jne.1_Missense_Mutation_p.Q229R|IRF4_uc003mta.3_RNA|IRF4_uc003mtb.3_Missense_Mutation_p.Q228R|IRF4_uc003mtc.1_Missense_Mutation_p.Q59R	NM_002460	NP_002451	Q15306	IRF4_HUMAN	interferon regulatory factor 4	229					interferon-gamma-mediated signaling pathway|positive regulation of interleukin-10 biosynthetic process|positive regulation of interleukin-13 biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of transcription, DNA-dependent|regulation of T-helper cell differentiation|T cell activation|type I interferon-mediated signaling pathway	cytoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(1)	1		Breast(5;0.0155)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.03)|BRCA - Breast invasive adenocarcinoma(62;0.0702)		CCTGAGTCCCAGGCTCCCGGA	0.562000			T	IGH@	MM 								3	48					0	0	0.014758	0	0
WRNIP1	56897	broad.mit.edu	37	6	2783732	2783732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:2783732G>A	uc003mtz.2	+	5	1770	c.1579G>A	c.(1579-1581)GAG>AAG	p.E527K	WRNIP1_uc003mua.2_Missense_Mutation_p.E502K	NM_020135	NP_064520	Q96S55	WRIP1_HUMAN	Werner helicase interacting protein isoform 1	527					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA-dependent DNA replication initiation	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|DNA binding|metal ion binding|protein binding			ovary(1)|pancreas(1)	2	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				TCGCATGCTCGAGGGAGGAGA	0.602000													16	41					0	0	0.038395	0	0
RNF182	221687	broad.mit.edu	37	6	13977475	13977476	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:13977475_13977476GG>AA	uc003nbe.2	+	3	543_544	c.125_126GG>AA	c.(124-126)AGG>AAA	p.R42K	RNF182_uc003nbf.2_Missense_Mutation_p.R42K|RNF182_uc003nbg.2_Missense_Mutation_p.R42K	NM_152737	NP_689950	Q8N6D2	RN182_HUMAN	ring finger protein 182	42	RING-type.					cytoplasm|integral to membrane|intracellular membrane-bounded organelle	protein binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Breast(50;0.00405)|Ovarian(93;0.0964)	all_hematologic(90;0.135)	Epithelial(50;0.195)			TGTTGTCATAGGGTTTGTGCCA	0.485000													48	124					0	0	0.004672	0	0
OR14J1	442191	broad.mit.edu	37	6	29274491	29274491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:29274491G>A	uc011dln.1	+	1	25	c.25G>A	c.(25-27)GGA>AGA	p.G9R		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTCAATGAGTGGATTCCTTCT	0.418000													44	115					0	0	0.048971	0	0
KIAA1949	170954	broad.mit.edu	37	6	30652790	30652790	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:30652790G>A	uc003nra.2	-	2	1237	c.1006C>T	c.(1006-1008)CTG>TTG	p.L336L	KIAA1949_uc003nrb.3_Silent_p.L336L	NM_001134870	NP_001128342	Q6NYC8	PHTNS_HUMAN	phostensin	336						cytoplasm|cytoskeleton	actin binding				0						CCGGAGTTCAGGGTCCATTTC	0.572000													124	80					0	0	0.048971	0	0
IP6K3	117283	broad.mit.edu	37	6	33690685	33690685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:33690685G>A	uc010jvf.2	-	7	1581	c.1045C>T	c.(1045-1047)CCC>TCC	p.P349S	IP6K3_uc003ofb.2_Missense_Mutation_p.P349S	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	349					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						GCTGCCTGGGGAGCCTCGTGA	0.557000													37	108					0	0	0.027894	0	0
CRIP3	401262	broad.mit.edu	37	6	43276122	43276122	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:43276122C>T	uc010jyn.1	-	2	69	c.69G>A	c.(67-69)AAG>AAA	p.K23K	CRIP3_uc003ouu.1_Silent_p.K23K	NM_206922	NP_996805	Q6Q6R5	CRIP3_HUMAN	cysteine-rich protein 3	23	LIM zinc-binding 1.					cytoplasm	zinc ion binding			skin(1)	1			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			GGTGCCAGTTCTTGCCCAGGG	0.622000													20	43					0	0	0.049695	0	0
GPR115	221393	broad.mit.edu	37	6	47682430	47682430	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:47682430C>T	uc003oza.1	+	6	1707	c.1449C>T	c.(1447-1449)TTC>TTT	p.F483F	GPR115_uc003oyz.1_Silent_p.F540F|GPR115_uc003ozb.1_Silent_p.F481F	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	483	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						GCCACTTTTTCTACCTCTCTC	0.408000													69	194					0	0	0.048971	0	0
PGK2	5232	broad.mit.edu	37	6	49753856	49753856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:49753856C>T	uc003ozu.2	-	1	1152	c.1045G>A	c.(1045-1047)GCT>ACT	p.A349T		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	349					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					GTTCCCTTAGCAAAGGCATCC	0.483000													26	171					0	0	0.021523	0	0
BMP5	653	broad.mit.edu	37	6	55623891	55623891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:55623891C>T	uc003pcq.2	-	6	1839	c.1127G>A	c.(1126-1128)GGA>GAA	p.G376E	BMP5_uc011dxf.1_Intron	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	376					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TGCAGCGTATCCTTCTGGTGC	0.269000													14	36					0	0	0.020292	0	0
IMPG1	3617	broad.mit.edu	37	6	76728571	76728571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:76728571C>T	uc003pik.1	-	7	801	c.671G>A	c.(670-672)AGA>AAA	p.R224K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	224					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TTCTGTTTCTCTTTCCTGAGT	0.413000													15	3					0	0	0.038395	0	0
USP45	85015	broad.mit.edu	37	6	99893858	99893858	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:99893858G>C	uc003ppx.2	-	14	2323	c.1790C>G	c.(1789-1791)TCT>TGT	p.S597C	USP45_uc003ppv.2_Intron|USP45_uc003ppw.2_Missense_Mutation_p.S277C	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	ubiquitin specific peptidase 45	597					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|breast(1)	2		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		GGGACTATAAGACCTCAAATG	0.353000													18	5					0	0	0.033300	0	0
RFX6	222546	broad.mit.edu	37	6	117241473	117241473	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:117241473A>G	uc003pxm.2	+	12	1246	c.1183A>G	c.(1183-1185)ATT>GTT	p.I395V		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	395					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CTCTATGCAGATTGCCAGACC	0.358000													29	14					0	0	0.050027	0	0
PTPRK	5796	broad.mit.edu	37	6	128304508	128304508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr6:128304508C>T	uc003qbk.2	-	23	3630	c.3263G>A	c.(3262-3264)CGA>CAA	p.R1088Q	PTPRK_uc003qbj.2_Missense_Mutation_p.R1089Q|PTPRK_uc010kfc.2_Missense_Mutation_p.R1095Q|PTPRK_uc011ebu.1_Missense_Mutation_p.R1111Q	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1088	Substrate binding (By similarity).|Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		GCAGCCAGTTCGTCCAGCACC	0.383000													14	3					0	0	0.028581	0	0
PMS2	5395	broad.mit.edu	37	7	6042088	6042088	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:6042088T>C	uc003spl.2	-	5	620	c.533A>G	c.(532-534)AAG>AGG	p.K178R	PMS2_uc003spj.2_Missense_Mutation_p.K72R|PMS2_uc003spk.2_Missense_Mutation_p.K43R|PMS2_uc011jwl.1_Missense_Mutation_p.K43R|PMS2_uc010ktg.2_5'UTR|PMS2_uc010kte.2_Missense_Mutation_p.K178R|PMS2_uc010ktf.1_Missense_Mutation_p.K178R	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	178					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		CTGTACCTTCTTAATATTCCT	0.418000			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				129	64					0	0	0.048971	0	0
MPP6	51678	broad.mit.edu	37	7	24703239	24703240	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:24703239_24703240CC>TT	uc003swx.2	+	7	981_982	c.682_683CC>TT	c.(682-684)CCA>TTA	p.P228L	MPP6_uc003swy.2_Missense_Mutation_p.P228L|MPP6_uc010kur.2_5'Flank	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	228	SH3.				protein complex assembly		protein binding				0						TGATTATAATCCATACAATGAC	0.327000													7	60					0	0	0.004672	0	0
JAZF1	221895	broad.mit.edu	37	7	28220173	28220173	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:28220173G>A	uc003szn.2	-	1	265	c.24C>T	c.(22-24)TCC>TCT	p.S8S	uc011jzq.1_Intron	NM_175061	NP_778231	Q86VZ6	JAZF1_HUMAN	JAZF zinc finger 1	8					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcriptional repressor complex	nucleic acid binding|transcription corepressor activity|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131						TGGAGAAGAAGGAGGCGGCGG	0.642000			T	SUZ12	endometrial stromal tumours								301	155					0	0	0.048971	0	0
POU6F2	11281	broad.mit.edu	37	7	39247072	39247072	+	Missense_Mutation	SNP	C	T	T	rs150551730		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:39247072C>T	uc003thb.1	+	4	406	c.364C>T	c.(364-366)CTC>TTC	p.L122F	POU6F2_uc010kxo.2_Missense_Mutation_p.L114F	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	122					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CCAGCCAATCCTCATTCCCTT	0.592000													62	254					0	0	0.048971	0	0
LANCL2	55915	broad.mit.edu	37	7	55433764	55433764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:55433764G>A	uc003tqp.2	+	1	624	c.46G>A	c.(46-48)GAG>AAG	p.E16K		NM_018697	NP_061167	Q9NS86	LANC2_HUMAN	LanC lantibiotic synthetase component C-like 2	16					negative regulation of transcription, DNA-dependent|positive regulation of abscisic acid mediated signaling pathway	cortical actin cytoskeleton|cytosol|nucleus|plasma membrane	ATP binding|catalytic activity|GTP binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding			ovary(1)|skin(1)	2	Breast(14;0.0379)		Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00128)|Epithelial(13;0.0706)			CCTGGGAGGGGAGGCAGAAAT	0.701000													7	10					0	0	0.029380	0	0
SEMA3A	10371	broad.mit.edu	37	7	83606496	83606496	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:83606496C>G	uc003uhz.2	-	15	1984	c.1669G>C	c.(1669-1671)GAT>CAT	p.D557H		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	557					axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						TTTCTTATATCTTGTCGTCTT	0.348000													73	36					0	0	0.048971	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86542394	86542394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:86542394G>A	uc011kha.1	-	14	2043	c.1858C>T	c.(1858-1860)CCC>TCC	p.P620S	KIAA1324L_uc003uif.1_Missense_Mutation_p.P380S|KIAA1324L_uc011kgz.1_Missense_Mutation_p.P506S|KIAA1324L_uc003uie.2_Missense_Mutation_p.P453S	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	620	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					GGAGGGCAGGGGACACACGAT	0.527000													64	28					0	0	0.048971	0	0
ASB4	51666	broad.mit.edu	37	7	95115312	95115312	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:95115312A>T	uc011kij.1	+	1	29	c.29A>T	c.(28-30)AAA>ATA	p.K10I	ASB4_uc003unx.2_Missense_Mutation_p.K10I	NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	10					intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			CCTGTCACTAAATCTGGAGCT	0.468000													43	23					0	0	0.039052	0	0
Unknown	0	broad.mit.edu	37	7	100552614	100552614	+	RNA	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:100552614C>T	uc003uxk.1	+	1		c.1865C>T			uc003uxl.1_Silent_p.I355I					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TCCCGACCATCCTGAGGACTT	0.567000													165	190					0	0	0.048971	0	0
MUC17	140453	broad.mit.edu	37	7	100686262	100686262	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:100686262C>T	uc003uxp.1	+	3	11618	c.11565C>T	c.(11563-11565)TTC>TTT	p.F3855F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3855	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCGGTTCATTCTCCATACCTG	0.473000													105	46					0	0	0.048971	0	0
SLC26A5	375611	broad.mit.edu	37	7	103018182	103018183	+	Missense_Mutation	DNP	GG	AA	AA	rs144150940		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:103018182_103018183GG>AA	uc003vbz.2	-	18	2085_2086	c.1849_1850CC>TT	c.(1849-1851)CCC>TTC	p.P617F	SLC26A5_uc003vbt.1_Missense_Mutation_p.P617F|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.P585F|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	617	Cytoplasmic (Potential).|STAS.				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CACTATTGGGGGATATTTTACT	0.401000													19	98					0	0	0.004672	0	0
DOCK4	9732	broad.mit.edu	37	7	111517203	111517203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:111517203G>A	uc003vfx.2	-	17	1896	c.1627C>T	c.(1627-1629)CTC>TTC	p.L543F	DOCK4_uc003vfw.2_5'UTR|DOCK4_uc003vfy.2_Missense_Mutation_p.L543F|DOCK4_uc003vga.1_Missense_Mutation_p.L148F	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	543	DHR-1.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				GGAAGTTTGAGGTAGCGGGTA	0.363000													14	5					0	0	0.024245	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113558310	113558310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:113558310G>A	uc010ljy.1	-	1	773	c.742C>T	c.(742-744)CCT>TCT	p.P248S		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	248					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TGTCTGTTAGGAACTTCTTTC	0.303000													36	188					0	0	0.027894	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				64	36					0	0	0.048971	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175539	143175539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:143175539C>T	uc003wdc.1	+	1	574	c.574C>T	c.(574-576)CCT>TCT	p.P192S	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	192	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					CTGGTCAATTCCTTTTTCTGT	0.403000													28	71					0	0	0.030593	0	0
ZNF212	7988	broad.mit.edu	37	7	148947803	148947803	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:148947803G>C	uc003wfp.2	+	3	542	c.446G>C	c.(445-447)TGT>TCT	p.C149S		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	149	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			GATGGCGTCTGTTTCACCGAG	0.502000													19	184					0	0	0.055883	0	0
ZNF777	27153	broad.mit.edu	37	7	149152756	149152757	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:149152756_149152757GG>AA	uc003wfv.2	-	2	520_521	c.357_358CC>TT	c.(355-360)TCCCAC>TCTTAC	p.H120Y		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	120					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGGGGGGAGTGGGAGAGAAGGG	0.609000													38	291					0	0	0.004672	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325586	150325586	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:150325586C>A	uc003whn.2	-	3	524	c.100G>T	c.(100-102)GAA>TAA	p.E34*	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	34							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTCTTCTGTTCTTTCTCCCTT	0.527000													72	433					3.89499e-28	4.55515e-28	0.048971	1	0
GALNTL5	168391	broad.mit.edu	37	7	151699958	151699958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr7:151699958G>A	uc003wkp.2	+	6	1041	c.818G>A	c.(817-819)AGG>AAG	p.R273K	GALNTL5_uc003wkq.2_Missense_Mutation_p.R24K|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.R162K	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	273	Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		CCTCTTGTAAGGGGAACTTTT	0.438000													60	170					0	0	0.048971	0	0
CSMD1	64478	broad.mit.edu	37	8	3443700	3443700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:3443700C>T	uc011kwk.1	-	9	1573	c.1183G>A	c.(1183-1185)GAG>AAG	p.E395K		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	395	Extracellular (Potential).|Sushi 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCGAGCGTCTCTGTAACTCTC	0.478000													25	6					0	0	0.018920	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23056848	23056848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:23056848C>T	uc003xda.2	-	8	1010	c.945G>A	c.(943-945)ATG>ATA	p.M315I		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	315	Cytoplasmic (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		CCTGGCTTTCCATTTGCTGCT	0.582000													29	48					0	0	0.030593	0	0
C8orf80	389643	broad.mit.edu	37	8	27880870	27880870	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:27880870G>A	uc003xgm.3	-	19	2498	c.2355C>T	c.(2353-2355)TCC>TCT	p.S785S		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	785						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		CCTTGCTGGGGGATGCCCTTA	0.537000													10	14					0	0	0.008291	0	0
EXTL3	2137	broad.mit.edu	37	8	28574773	28574773	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:28574773C>T	uc003xgz.1	+	3	1790	c.1197C>T	c.(1195-1197)ACC>ACT	p.T399T		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	399	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		TGGAATTCACCTGCAAAAACC	0.602000													19	21					0	0	0.043863	0	0
WRN	7486	broad.mit.edu	37	8	30969276	30969276	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:30969276A>G	uc003xio.3	+	19	3022	c.2234A>G	c.(2233-2235)AAT>AGT	p.N745S	WRN_uc010lvk.2_Missense_Mutation_p.N212S	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	745					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		AAAACAGGGAATATCCTTCAG	0.348000			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				26	24					0	0	0.034045	0	0
RB1CC1	9821	broad.mit.edu	37	8	53596543	53596543	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:53596543G>A	uc003xre.3	-	4	660	c.102C>T	c.(100-102)AGC>AGT	p.S34S	RB1CC1_uc003xrf.3_Silent_p.S34S	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	34					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				TCTTGTATTTGCTTTGAATGG	0.403000													4	39					0	0	0.009096	0	0
CLVS1	157807	broad.mit.edu	37	8	62289202	62289202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:62289202C>T	uc003xuh.2	+	3	818	c.494C>T	c.(493-495)TCA>TTA	p.S165L	CLVS1_uc003xug.2_Missense_Mutation_p.H164Y|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.S165L	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	165	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						ATCCTGCTGTCATTGGAAGTC	0.448000													34	41					0	0	0.033182	0	0
C8orf34	116328	broad.mit.edu	37	8	69445342	69445342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:69445342G>A	uc010lyz.2	+	7	854	c.805G>A	c.(805-807)GAA>AAA	p.E269K	C8orf34_uc010lyy.1_Missense_Mutation_p.E269K|C8orf34_uc003xyb.2_Missense_Mutation_p.E244K	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	269					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			ATCTGTAACAGAAGAAGATAT	0.358000													27	40					0	0	0.030593	0	0
GRHL2	79977	broad.mit.edu	37	8	102631910	102631910	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:102631910G>A	uc010mbu.2	+	9	1572	c.1242G>A	c.(1240-1242)AAG>AAA	p.K414K		NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	414						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			GCCAGATCAAGGTCTTCTGTG	0.333000													24	36					0	0	0.021523	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110432830	110432830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:110432830G>A	uc003yne.2	+	23	2712	c.2608G>A	c.(2608-2610)GGG>AGG	p.G870R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	870	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAAAACAAATGGGCCAACTAT	0.373000										HNSCC(38;0.096)			26	36					0	0	0.018920	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110448656	110448656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:110448656G>A	uc003yne.2	+	30	3699	c.3595G>A	c.(3595-3597)GAT>AAT	p.D1199N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1199	Extracellular (Potential).|IPT/TIG 5.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GATTGAAGGGGATTTGAATAG	0.358000										HNSCC(38;0.096)			21	23					0	0	0.055883	0	0
FLJ43860	389690	broad.mit.edu	37	8	142498693	142498693	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr8:142498693G>A	uc003ywi.2	-	6	789	c.708C>T	c.(706-708)TTC>TTT	p.F236F	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	236							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CTTCCTGGCTGAAGAGCTCCT	0.632000													20	25					0	0	0.021523	0	0
IL33	90865	broad.mit.edu	37	9	6250538	6250538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr9:6250538G>A	uc003zjt.2	+	3	213	c.156G>A	c.(154-156)ATG>ATA	p.M52I	IL33_uc011lmg.1_Missense_Mutation_p.M52I|IL33_uc011lmh.1_Intron|IL33_uc003zju.1_Missense_Mutation_p.M52I	NM_033439	NP_254274	O95760	IL33_HUMAN	interleukin 33 precursor	52					positive regulation of chemokine secretion|positive regulation of inflammatory response|positive regulation of macrophage activation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity				0		Acute lymphoblastic leukemia(23;0.158)|Prostate(43;0.167)		GBM - Glioblastoma multiforme(50;0.0161)|Lung(218;0.105)		CTGGCCTTATGATAAAAAAGG	0.418000													35	37					0	0	0.054565	0	0
CER1	9350	broad.mit.edu	37	9	14722326	14722326	+	Silent	SNP	C	T	T	rs138557355		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr9:14722326C>T	uc003zlj.2	-	1	390	c.345G>A	c.(343-345)CCG>CCA	p.P115P		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	115					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		TTCCATCTATCGGCTGGATGA	0.507000													48	74					0	0	0.048971	0	0
FREM1	158326	broad.mit.edu	37	9	14759870	14759870	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr9:14759870C>A	uc003zlm.2	-	28	5824	c.5234G>T	c.(5233-5235)TGG>TTG	p.W1745L	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.W281L	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1745	Calx-beta.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GGTCTGTGACCATTCAATATG	0.428000													35	149					2.40579e-17	2.79775e-17	0.025465	1	0
CNTLN	54875	broad.mit.edu	37	9	17135129	17135129	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr9:17135129C>T	uc003zmz.2	+	1	92	c.66C>T	c.(64-66)TCC>TCT	p.S22S	CNTLN_uc003zmx.3_Silent_p.S22S|CNTLN_uc003zmy.2_Silent_p.S22S|CNTLN_uc003zmw.1_Silent_p.S22S	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	22						centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		GCCCCAGGTCCCCACGTGTTG	0.677000													22	29					0	0	0.018920	0	0
LOC442421	442421	broad.mit.edu	37	9	66499770	66499770	+	Missense_Mutation	SNP	G	T	T	rs75046133		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr9:66499770G>T	uc004aee.1	+	1	580	c.580G>T	c.(580-582)GCC>TCC	p.A194S	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						CAACCTGGTGGCCATCGTGGT	0.582000													6	70					4.3838e-07	4.99971e-07	0.016723	1	0
Unknown	0	broad.mit.edu	37	9	98775115	98775115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr9:98775115C>T	uc010msa.1	+	4	2102	c.1226C>T	c.(1225-1227)CCA>CTA	p.P409L	uc011lun.1_Intron					RecName: Full=Uncharacterized protein C9orf102;																		ATAGAAAATCCAGTGCTGGAA	0.388000													28	4					0	0	0.034045	0	0
WWC3	55841	broad.mit.edu	37	X	10085462	10085462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chrX:10085462C>T	uc004csx.3	+	11	1561	c.1363C>T	c.(1363-1365)CGC>TGC	p.R455C	WWC3_uc010nds.2_Missense_Mutation_p.R119C|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	455	Ser-rich.									ovary(4)	4						GCTGTCCTCCCGCTCCTCGCT	0.711000													14	1					0	0	0.033300	0	0
GLRA2	2742	broad.mit.edu	37	X	14625263	14625263	+	Silent	SNP	G	A	A	rs113271440		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chrX:14625263G>A	uc010nep.2	+	7	920	c.588G>A	c.(586-588)ACG>ACA	p.T196T	GLRA2_uc010neq.2_Silent_p.T196T|GLRA2_uc004cwe.3_Silent_p.T196T|GLRA2_uc011mio.1_Silent_p.T107T|GLRA2_uc011mip.1_Silent_p.T174T	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	196	Extracellular (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	TTGGGTACACGATGAATGACC	0.388000													29	8					0	0	0.045705	0	0
PHKA2	5256	broad.mit.edu	37	X	18944674	18944674	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chrX:18944674C>T	uc004cyv.3	-	14	1786	c.1356G>A	c.(1354-1356)AAG>AAA	p.K452K	PHKA2_uc010nfg.1_RNA	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	452					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					TCAATAAGTCCTTAATGTGAT	0.453000													25	7					0	0	0.024334	0	0
SYN1	6853	broad.mit.edu	37	X	47466364	47466364	+	Silent	SNP	C	T	T			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chrX:47466364C>T	uc004die.2	-	3	636	c.507G>A	c.(505-507)CGG>CGA	p.R169R	SYN1_uc004did.2_Silent_p.R169R	NM_006950	NP_008881	P17600	SYN1_HUMAN	synapsin I isoform Ia	169	C; actin-binding and synaptic-vesicle binding.					cell junction|Golgi apparatus	actin binding|ATP binding|ligase activity|transporter activity			ovary(1)	1						TCACCCCATTCCGAAGAACTT	0.488000													14	1					0	0	0.020292	0	0
CACNA1F	778	broad.mit.edu	37	X	49061615	49061615	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chrX:49061615G>A	uc004dnb.2	-	48	5978	c.5916C>T	c.(5914-5916)GCC>GCT	p.A1972A	CACNA1F_uc010nip.2_Silent_p.A1961A	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1972	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CGTGGACGCAGGCCATCTCGT	0.617000													12	1					0	0	0.013537	0	0
H2BFWT	158983	broad.mit.edu	37	X	103267877	103267877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chrX:103267877G>A	uc004elr.2	-	1	380	c.356C>T	c.(355-357)ACC>ATC	p.T119I		NM_001002916	NP_001002916	Q7Z2G1	H2BWT_HUMAN	H2B histone family, member W, testis-specific	119					nucleosome assembly	nuclear membrane|nucleosome	DNA binding			ovary(1)	1						ACCAGCCTCGGTGGCGATGCG	0.652000													11	1					0	0	0.020292	0	0
DOCK11	139818	broad.mit.edu	37	X	117724265	117724265	+	Silent	SNP	G	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chrX:117724265G>A	uc004eqp.2	+	19	2202	c.2139G>A	c.(2137-2139)GAG>GAA	p.E713E	DOCK11_uc004eqq.2_Silent_p.E479E	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	713	DHR-1.				blood coagulation	cytosol	GTP binding			ovary(3)	3						TCTATGATGAGGTAAAAATAT	0.353000													34	6					0	0	0.064281	0	0
FAF1	11124	broad.mit.edu	37	1	50957438	50957439	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:50957438_50957439delCT	uc009vyx.1	-	17	1592_1593	c.1529_1530delAG	c.(1528-1530)GAGfs	p.E510fs	FAF1_uc009vyw.1_RNA|FAF1_uc001cse.1_Frame_Shift_Del_p.E510fs|FAF1_uc010onc.1_Frame_Shift_Del_p.E268fs	NM_007051	NP_008982	Q9UNN5	FAF1_HUMAN	FAS-associated factor 1	510					apoptosis|cytoplasmic sequestering of NF-kappaB|positive regulation of apoptosis|positive regulation of protein complex assembly|proteasomal ubiquitin-dependent protein catabolic process|regulation of protein catabolic process	CD95 death-inducing signaling complex|cytosol|perinuclear region of cytoplasm	heat shock protein binding|NF-kappaB binding|protein kinase binding|protein kinase regulator activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(3;3.18e-11)|all cancers(3;0.00526)		CCTCATCTTGCTCTCTCTTCAC	0.332													18	67	---	---	---	---					
ZCCHC11	23318	broad.mit.edu	37	1	52962697	52962697	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:52962697delA	uc001ctx.2	-	5	1392	c.1158delT	c.(1156-1158)GTTfs	p.V386fs	ZCCHC11_uc001cty.2_Frame_Shift_Del_p.V386fs|ZCCHC11_uc001ctz.2_Frame_Shift_Del_p.V386fs|ZCCHC11_uc009vze.1_Frame_Shift_Del_p.V386fs|ZCCHC11_uc009vzf.1_Frame_Shift_Del_p.V145fs|ZCCHC11_uc001cub.2_Frame_Shift_Del_p.V386fs|ZCCHC11_uc001cuc.2_Intron	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	386					miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						ATGTCGTTATAACCTTTGACA	0.348													18	38	---	---	---	---					
LPPR4	9890	broad.mit.edu	37	1	99771243	99771244	+	Frame_Shift_Ins	INS	-	TT	TT			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:99771243_99771244insTT	uc001dse.2	+	7	1075_1076	c.969_970insTT	c.(967-972)GGCTTGfs	p.G323fs	LPPR4_uc010oue.1_Frame_Shift_Ins_p.G265fs	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	323_324	Helical; (Potential).						phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		AACACTAGGGCTTGTATGCTGT	0.450													53	86	---	---	---	---					
SMG7	9887	broad.mit.edu	37	1	183515266	183515267	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr1:183515266_183515267insA	uc001gqg.2	+	17	2658_2659	c.2536_2537insA	c.(2536-2538)GAAfs	p.E846fs	SMG7_uc010pob.1_Frame_Shift_Ins_p.E829fs|SMG7_uc001gqf.2_Frame_Shift_Ins_p.E800fs|SMG7_uc001gqh.2_Frame_Shift_Ins_p.E800fs|SMG7_uc001gqi.2_Frame_Shift_Ins_p.E758fs|SMG7_uc010poc.1_Frame_Shift_Ins_p.E804fs	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	846					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GCAGCCTCTAGAAAAAAAAATG	0.450													7	62	---	---	---	---					
C10orf71	118461	broad.mit.edu	37	10	50534969	50534970	+	Frame_Shift_Ins	INS	-	AC	AC	rs66701434		TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr10:50534969_50534970insAC	uc010qgp.1	+	4	2407_2408	c.2068_2069insAC	c.(2068-2070)AACfs	p.N690fs		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	690											0						CAAAACAAGCAacacacacaca	0.406													3	3	---	---	---	---					
SLC20A1	6574	broad.mit.edu	37	2	113416627	113416628	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chr2:113416627_113416628insC	uc002tib.2	+	7	1450_1451	c.1004_1005insC	c.(1003-1005)AGCfs	p.S335fs	SLC20A1_uc002tic.1_Frame_Shift_Ins_p.S147fs	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	335	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						AGGCTTCCCAGCGTGGACTTGA	0.520													22	81	---	---	---	---					
HUWE1	10075	broad.mit.edu	37	X	53574783	53574785	+	In_Frame_Del	DEL	GTG	-	-			TCGA-EE-A29A-06A-12D-A196-08	TCGA-EE-A29A-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	7070091e-69f2-4eaf-b4d2-069b8d355128	35908ea4-8c82-4f9a-81c6-2dc5e4cc78c2	g.chrX:53574783_53574785delGTG	uc004dsp.2	-	68	10887_10889	c.10485_10487delCAC	c.(10483-10488)ACCACT>ACT	p.3495_3496TT>T	HUWE1_uc004dsn.2_In_Frame_Del_p.2303_2304TT>T	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3495_3496	Thr-rich.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						ggaggcggcagtggtggtggtgg	0.409													2	4	---	---	---	---					
