Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MIB2	142678	broad.mit.edu	37	1	1560564	1560564	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:1560564C>T	uc001agg.2	+	6	1021	c.894C>T	c.(892-894)CTC>CTT	p.L298L	MIB2_uc001agh.2_Silent_p.L284L|MIB2_uc001agi.2_Silent_p.L298L|MIB2_uc001agj.2_Silent_p.L139L|MIB2_uc001agk.2_Intron|MIB2_uc001agl.1_Silent_p.L254L|MIB2_uc001agm.2_Intron|MIB2_uc010nyq.1_Silent_p.L254L|MIB2_uc009vkh.2_Silent_p.L139L|MIB2_uc001agn.2_5'UTR	NM_080875	NP_543151	Q96AX9	MIB2_HUMAN	mindbomb homolog 2	298					Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TCCCAAGGCTCGGTATGAGGC	0.642													5	23					0	0	0.001168	0	0
KCNAB2	8514	broad.mit.edu	37	1	6155618	6155618	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:6155618G>A	uc009vlv.1	+	13	873	c.738G>A	c.(736-738)CTG>CTA	p.L246L	KCNAB2_uc001alv.1_Silent_p.L246L|KCNAB2_uc001alw.1_Silent_p.L232L|KCNAB2_uc001alx.1_Silent_p.L246L|KCNAB2_uc001aly.1_Silent_p.L294L|KCNAB2_uc009vlw.1_Silent_p.L179L|KCNAB2_uc001alu.2_Silent_p.L246L	NM_003636	NP_003627	Q13303	KCAB2_HUMAN	potassium voltage-gated channel, shaker-related	246	NADP.					cytoplasm|integral to membrane|juxtaparanode region of axon	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity				0	Ovarian(185;0.0634)	all_cancers(23;5.85e-39)|all_epithelial(116;4.88e-22)|all_lung(118;4.21e-08)|Lung NSC(185;9.77e-07)|all_hematologic(16;2.78e-06)|all_neural(13;3.18e-06)|Acute lymphoblastic leukemia(12;0.000272)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00106)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;6.9e-37)|GBM - Glioblastoma multiforme(13;8.8e-31)|OV - Ovarian serous cystadenocarcinoma(86;1.45e-19)|Colorectal(212;2.46e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|Kidney(185;7.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00131)|BRCA - Breast invasive adenocarcinoma(365;0.00133)|STAD - Stomach adenocarcinoma(132;0.00391)|READ - Rectum adenocarcinoma(331;0.0649)		GGTCCCCTCTGGCCTGTGGCA	0.647													10	65					0	0	0.013537	0	0
SLC45A1	50651	broad.mit.edu	37	1	8390336	8390336	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:8390336C>T	uc001apb.2	+	4	783	c.783C>T	c.(781-783)GCC>GCT	p.A261A	SLC45A1_uc001apc.2_5'UTR	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	261					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TCGGGAGGGCCCTGGGGGGAC	0.617													6	44					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	1	9211837	9211837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:9211837G>A	uc009vmq.2	-	2	444	c.338C>T	c.(337-339)CCG>CTG	p.P113L	MIR34A_hsa-mir-34a|MI0000268_5'Flank					EF609116																		ACAGCTGGCCGGTCCACGGCA	0.537													13	37					0	0	0.020292	0	0
ZBTB17	7709	broad.mit.edu	37	1	16268534	16268535	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:16268534_16268535CC>TT	uc001axl.3	-	16	2580_2581	c.2341_2342GG>AA	c.(2341-2343)GGG>AAG	p.G781K	ZBTB17_uc010obq.1_Missense_Mutation_p.G698K|ZBTB17_uc010obr.1_Missense_Mutation_p.G788K|ZBTB17_uc010obs.1_Missense_Mutation_p.G705K	NM_003443	NP_003434	Q13105	ZBT17_HUMAN	zinc finger and BTB domain containing 17	781	Interaction with HCFC1.				negative regulation of cell cycle	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|Colorectal(212;4.12e-07)|COAD - Colon adenocarcinoma(227;2.43e-05)|BRCA - Breast invasive adenocarcinoma(304;9.97e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCTCAGCCCCGTCGCGAGGG	0.658													12	50					0	0	0.004672	0	0
EPHA2	1969	broad.mit.edu	37	1	16456733	16456733	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:16456733T>C	uc001aya.1	-	15	2794	c.2657A>G	c.(2656-2658)GAC>GGC	p.D886G		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	886	Mediates interaction with ARHGEF16 and ELMO2.|Cytoplasmic (Potential).|Negatively regulates interaction with ARHGEF16.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GGGGTCAAAGTCAGCCAGGGT	0.582													12	27					0	0	0.010729	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418													4	38					0	0	0.014758	0	0
TAS1R2	80834	broad.mit.edu	37	1	19184070	19184070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:19184070C>T	uc001bba.1	-	2	239	c.238G>A	c.(238-240)GAG>AAG	p.E80K		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	80	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TTGATCTCCTCCACCGCAAAG	0.542													17	26					0	0	0.007413	0	0
UBR4	23352	broad.mit.edu	37	1	19437238	19437238	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:19437238G>A	uc001bbi.2	-	79	11894	c.11890C>T	c.(11890-11892)CTG>TTG	p.L3964L		NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3964					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CGGCTCACCAGATCGGGGTTG	0.587													13	76					0	0	0.004007	0	0
SEPN1	57190	broad.mit.edu	37	1	26138023	26138023	+	Silent	SNP	C	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:26138023C>G	uc010oer.1	+	10	1144	c.1089C>G	c.(1087-1089)CCC>CCG	p.P363P	SEPN1_uc010oes.1_Silent_p.P329P	NM_020451	NP_065184	Q9NZV5	SELN_HUMAN	selenoprotein N, 1 isoform 1 precursor	363						endoplasmic reticulum membrane|extracellular region	protein binding			ovary(2)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0421)|OV - Ovarian serous cystadenocarcinoma(117;1.26e-25)|Colorectal(126;3.01e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0143)|READ - Rectum adenocarcinoma(331;0.0649)		GCTACATACCCCAGGTGAGCG	0.617											OREG0013258	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	88					0	0	0.004672	0	0
ADC	113451	broad.mit.edu	37	1	33583706	33583707	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:33583706_33583707CC>TT	uc001bwr.2	+	11	1820_1821	c.1233_1234CC>TT	c.(1231-1236)TCCCGG>TCTTGG	p.R412W	ADC_uc001bws.2_Missense_Mutation_p.R412W|ADC_uc009vue.2_Missense_Mutation_p.R412W|ADC_uc001bwt.1_Missense_Mutation_p.R317W|ADC_uc001bwu.2_Missense_Mutation_p.R317W|ADC_uc001bwv.2_Missense_Mutation_p.R317W|ADC_uc001bww.2_Missense_Mutation_p.R317W|ADC_uc001bwx.1_Missense_Mutation_p.R389W|ADC_uc009vug.2_Missense_Mutation_p.R432W	NM_052998	NP_443724	Q96A70	ADC_HUMAN	ODC antizyme inhibitor-2	412					polyamine biosynthetic process|spermatogenesis	cytosol	arginine decarboxylase activity			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)			L-Arginine(DB00125)|Pyridoxal Phosphate(DB00114)	ATGCCATGTCCCGGGTGGCCTG	0.569													12	21					0	0	0.004672	0	0
INPP5B	3633	broad.mit.edu	37	1	38351420	38351420	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:38351420G>A	uc001ccg.1	-	13	1303	c.1209C>T	c.(1207-1209)GCC>GCT	p.A403A	INPP5B_uc009vvk.1_Silent_p.A344A|INPP5B_uc001ccf.1_Silent_p.A239A|INPP5B_uc010oij.1_Intron	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	483					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CTTCAATGTGGGCTGCCAAGT	0.507													36	69					0	0	0.021022	0	0
RLF	6018	broad.mit.edu	37	1	40703534	40703534	+	Missense_Mutation	SNP	C	T	T	rs142953276		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:40703534C>T	uc001cfc.3	+	8	3191	c.3160C>T	c.(3160-3162)CCC>TCC	p.P1054S	RLF_uc001cfd.3_Missense_Mutation_p.P745S	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	1054					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			TTCTAAAAGGCCCTGTACAGA	0.398													9	39					0	0	0.008291	0	0
C1orf168	199920	broad.mit.edu	37	1	57258455	57258455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:57258455C>T	uc001cym.3	-	2	437	c.31G>A	c.(31-33)GAA>AAA	p.E11K	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.E11K	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	11										ovary(3)|skin(2)	5						GCTCGAAGTTCCTTGAAGTTT	0.333													37	94					0	0	0.005524	0	0
CYP2J2	1573	broad.mit.edu	37	1	60366725	60366725	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:60366725C>T	uc001czq.2	-	8	1247	c.1242G>A	c.(1240-1242)GAG>GAA	p.E414E		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	414					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					GGGTGGCCCACTCTGTGGGGT	0.493													21	43					0	0	0.012319	0	0
C1orf173	127254	broad.mit.edu	37	1	75037958	75037958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:75037958C>T	uc001dgg.2	-	14	3655	c.3436G>A	c.(3436-3438)GAA>AAA	p.E1146K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1146	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGTGAATCTTCTCCTAGAAGC	0.468													17	38					0	0	0.004990	0	0
C1orf173	127254	broad.mit.edu	37	1	75038026	75038026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:75038026C>T	uc001dgg.2	-	14	3587	c.3368G>A	c.(3367-3369)GGA>GAA	p.G1123E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1123	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGCATCAGATCCCATTTCATT	0.448													16	37					0	0	0.003163	0	0
LPHN2	23266	broad.mit.edu	37	1	82409292	82409292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:82409292C>T	uc001dit.3	+	6	1218	c.1037C>T	c.(1036-1038)ACC>ATC	p.T346I	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.T346I|LPHN2_uc001div.2_Missense_Mutation_p.T346I|LPHN2_uc009wcd.2_Missense_Mutation_p.T346I	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	346	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		ATTTATAATACCCGATTAAAC	0.378													20	59					0	0	0.010504	0	0
CLCA1	1179	broad.mit.edu	37	1	86961235	86961235	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:86961235A>G	uc001dlt.2	+	12	2119	c.1990A>G	c.(1990-1992)ACT>GCT	p.T664A		NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	664					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		GTATTTCACAACTTATGACAC	0.448													5	37					0	0	0.001168	0	0
SLC44A3	126969	broad.mit.edu	37	1	95310896	95310896	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:95310896C>T	uc001dqv.3	+	9	1055	c.948C>T	c.(946-948)TTC>TTT	p.F316F	SLC44A3_uc001dqx.3_Silent_p.F316F|SLC44A3_uc010otq.1_Silent_p.F248F|SLC44A3_uc010otr.1_Silent_p.F280F|SLC44A3_uc001dqw.3_Silent_p.F268F|SLC44A3_uc010ots.1_Silent_p.F236F|SLC44A3_uc009wds.2_Silent_p.F219F|SLC44A3_uc010ott.1_Silent_p.F236F|SLC44A3_uc010otu.1_RNA	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	316						integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	TTGAGCTTTTCCAAATCACAA	0.438													20	51					0	0	0.008871	0	0
COL11A1	1301	broad.mit.edu	37	1	103345354	103345354	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:103345354C>T	uc001dul.2	-	66	5477	c.5159G>A	c.(5158-5160)TGG>TAG	p.W1720*	COL11A1_uc001duk.2_Nonsense_Mutation_p.W916*|COL11A1_uc001dum.2_Nonsense_Mutation_p.W1732*|COL11A1_uc001dun.2_Nonsense_Mutation_p.W1681*|COL11A1_uc009weh.2_Nonsense_Mutation_p.W1604*	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1720	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CACATCATACCAGGCTGCTGA	0.423													14	32					0	0	0.016723	0	0
MYBPHL	343263	broad.mit.edu	37	1	109839752	109839752	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:109839752G>T	uc001dxk.1	-	4	540	c.490C>A	c.(490-492)CTG>ATG	p.L164M	MYBPHL_uc010ovh.1_Missense_Mutation_p.L141M|MYBPHL_uc001dxl.2_Intron	NM_001010985	NP_001010985	A2RUH7	MBPHL_HUMAN	myosin binding protein H-like	164	Fibronectin type-III.									ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(203;0.00519)|all_epithelial(167;0.00575)|Lung NSC(277;0.00822)		Colorectal(144;0.0306)|Lung(183;0.0681)|COAD - Colon adenocarcinoma(174;0.117)|Epithelial(280;0.197)|all cancers(265;0.225)		GTCCATTCCAGTGTAGCGCTG	0.577													35	217					2.87052e-16	5.80858e-16	0.005524	1	0
CHIA	27159	broad.mit.edu	37	1	111857977	111857977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:111857977G>A	uc001eas.2	+	6	503	c.400G>A	c.(400-402)GGG>AGG	p.G134R	CHIA_uc001ear.2_Missense_Mutation_p.G26R|CHIA_uc001eaq.2_Missense_Mutation_p.G26R|CHIA_uc009wgc.2_Missense_Mutation_p.G26R|CHIA_uc001eat.2_Intron|CHIA_uc001eav.2_5'UTR|CHIA_uc001eau.2_Intron|CHIA_uc009wgd.2_Intron	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	134					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		TGAGTTTGACGGGCTGGACTT	0.547													24	34					0	0	0.004656	0	0
CD2	914	broad.mit.edu	37	1	117311214	117311214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:117311214C>T	uc001egu.3	+	5	894	c.865C>T	c.(865-867)CGT>TGT	p.R289C		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	289	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	ACCTGGTCATCGTTCCCAGGC	0.587													8	23					0	0	0.003080	0	0
FCGR1B	2210	broad.mit.edu	37	1	120927157	120927157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:120927157C>T	uc001eip.2	-	5	873	c.823G>A	c.(823-825)GAG>AAG	p.E275K	FCGR1B_uc001eiq.2_Missense_Mutation_p.E183K|FCGR1B_uc010oxl.1_RNA	NM_001017986	NP_001017986	Q92637	FCGRB_HUMAN	Fc fragment of IgG, high affinity Ib, receptor	275	Cytoplasmic (Potential).				interferon-gamma-mediated signaling pathway	integral to membrane|plasma membrane	IgG binding|immunoglobulin receptor activity				0	all_neural(166;0.181)	all_lung(203;7.27e-05)|Lung NSC(69;0.000389)|all_epithelial(167;0.068)		Lung(183;0.0327)|LUSC - Lung squamous cell carcinoma(189;0.19)		CCCTGGGGCTCCTTCCGGTGC	0.547													8	39					0	0	0.010729	0	0
GJA8	2703	broad.mit.edu	37	1	147380190	147380191	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:147380190_147380191CC>TT	uc001epu.1	+	2	171_172	c.108_109CC>TT	c.(106-111)ATCCTT>ATTTTT	p.L37F		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	37	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GGATCCTCATCCTTGGCACGGC	0.584													18	37					0	0	0.004672	0	0
TCHH	7062	broad.mit.edu	37	1	152081564	152081564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:152081564G>A	uc001ezp.2	-	2	4129	c.4129C>T	c.(4129-4131)CTC>TTC	p.L1377F	TCHH_uc009wne.1_Missense_Mutation_p.L1377F	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1377	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTCCTCGAGGAATTTTCTC	0.597													60	55					0	0	0.014410	0	0
SLC39A1	27173	broad.mit.edu	37	1	153932900	153932900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:153932900G>A	uc001fdh.2	-	4	818	c.649C>T	c.(649-651)CAC>TAC	p.H217Y	CRTC2_uc010ped.1_5'Flank|SLC39A1_uc001fdi.2_Missense_Mutation_p.H217Y|SLC39A1_uc001fdj.2_Missense_Mutation_p.H217Y|SLC39A1_uc001fdk.2_Missense_Mutation_p.H217Y|SLC39A1_uc010pee.1_Missense_Mutation_p.H115Y|SLC39A1_uc001fdl.2_Missense_Mutation_p.H217Y	NM_014437	NP_055252	Q9NY26	S39A1_HUMAN	solute carrier family 39 (zinc transporter),	217	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|membrane fraction|plasma membrane	zinc ion transmembrane transporter activity				0	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)	Colorectal(1306;0.019)		ATGCCCTTGTGGAGCAGCAAA	0.652													8	30					0	0	0.003080	0	0
ASH1L	55870	broad.mit.edu	37	1	155491015	155491015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:155491015G>A	uc009wqq.2	-	2	776	c.296C>T	c.(295-297)CCT>CTT	p.P99L	ASH1L_uc001fkt.2_Missense_Mutation_p.P99L|ASH1L_uc009wqr.1_Missense_Mutation_p.P99L	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	99					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			GTTCTTTGGAGGTTTTTTAGT	0.373													18	118					0	0	0.006122	0	0
RIT1	6016	broad.mit.edu	37	1	155870363	155870364	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:155870363_155870364GG>AA	uc001fmh.1	-	6	662_663	c.475_476CC>TT	c.(475-477)CCC>TTC	p.P159F	RIT1_uc010pgr.1_Missense_Mutation_p.P123F	NM_006912	NP_008843	Q92963	RIT1_HUMAN	Ras-like without CAAX 1	159					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			breast(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;1.79e-05)			CTCAAAAAAGGGACAGCTGAAT	0.411													11	78					0	0	0.004672	0	0
FCRL5	83416	broad.mit.edu	37	1	157494241	157494241	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:157494241G>A	uc001fqu.2	-	10	2225	c.2067C>T	c.(2065-2067)ATC>ATT	p.I689I	FCRL5_uc009wsm.2_Silent_p.I689I|FCRL5_uc010phv.1_Silent_p.I689I|FCRL5_uc010phw.1_Silent_p.I604I	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	689	Extracellular (Potential).|Ig-like C2-type 7.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACCAGTACAGGATTGGGGAGG	0.577													26	29					0	0	0.004656	0	0
CD5L	922	broad.mit.edu	37	1	157804505	157804505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:157804505C>T	uc001frk.3	-	4	553	c.410G>A	c.(409-411)GGT>GAT	p.G137D		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	137					apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CAGCCTGACACCCTCTGGGAC	0.597													17	25					0	0	0.004990	0	0
CD1E	913	broad.mit.edu	37	1	158323823	158323823	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:158323823G>A	uc001fse.2	+	1	284	c.45G>A	c.(43-45)GGG>GGA	p.G15G	CD1E_uc010pid.1_Intron|CD1E_uc010pie.1_Silent_p.G15G|CD1E_uc010pif.1_Silent_p.G15G|CD1E_uc001fsd.2_Silent_p.G15G|CD1E_uc001fsk.2_Silent_p.G15G|CD1E_uc001fsj.2_Silent_p.G15G|CD1E_uc001fsc.2_Silent_p.G15G|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Silent_p.G15G|CD1E_uc001fsf.2_Silent_p.G15G|CD1E_uc001fry.2_Silent_p.G15G|CD1E_uc001fsg.2_Silent_p.G15G|CD1E_uc001fsh.2_Silent_p.G15G|CD1E_uc001fsi.2_Silent_p.G15G|CD1E_uc009wsv.2_Silent_p.G15G|CD1E_uc001frz.2_Silent_p.G15G|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	15					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					GCTGTCCTGGGGAAAATACAG	0.542													11	26					0	0	0.020292	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576414	158576414	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:158576414C>T	uc010pio.1	+	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					TGTACCTCTTCCTTTCCTTCC	0.517													22	146					0	0	0.018920	0	0
SPTA1	6708	broad.mit.edu	37	1	158581126	158581126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:158581126C>T	uc001fst.1	-	52	7387	c.7188G>A	c.(7186-7188)ATG>ATA	p.M2396I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2396					actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCCGTGGGTCCATATATTGCT	0.433													11	44					0	0	0.016723	0	0
FCRL6	343413	broad.mit.edu	37	1	159779289	159779289	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:159779289C>T	uc001fud.3	+	5	744	c.702C>T	c.(700-702)TCC>TCT	p.S234S	FCRL6_uc001fuc.2_Silent_p.S241S|FCRL6_uc009wsz.1_Silent_p.S139S|FCRL6_uc009wta.2_Silent_p.S234S	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	234	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					AGAGGGGCTCCCCTCCGATCC	0.597													11	31					0	0	0.008291	0	0
ATP1A2	477	broad.mit.edu	37	1	160098511	160098511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:160098511G>A	uc001fvc.2	+	9	1219	c.1087G>A	c.(1087-1089)GAG>AAG	p.E363K	ATP1A2_uc001fvb.2_Missense_Mutation_p.E363K|ATP1A2_uc010piz.1_Missense_Mutation_p.E208K|ATP1A2_uc001fvd.2_Missense_Mutation_p.E99K|ATP1A2_uc009wtg.1_Missense_Mutation_p.E51K	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	363	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GGAGGCGGTGGAGACGCTGGG	0.577													6	49					0	0	0.001168	0	0
FMO3	2328	broad.mit.edu	37	1	171083326	171083326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:171083326C>T	uc001ghi.2	+	7	1118	c.1007C>T	c.(1006-1008)CCC>CTC	p.P336L	FMO3_uc001ghh.2_Missense_Mutation_p.P336L|FMO3_uc010pmb.1_Missense_Mutation_p.P316L|FMO3_uc010pmc.1_Missense_Mutation_p.P273L	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	336					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TTTGCCTACCCCTTCCTTGAT	0.403													32	34					0	0	0.015359	0	0
PAPPA2	60676	broad.mit.edu	37	1	176563998	176563998	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:176563998C>A	uc001gkz.2	+	3	2422	c.1258C>A	c.(1258-1260)CGT>AGT	p.R420S	PAPPA2_uc001gky.1_Missense_Mutation_p.R420S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	420					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCACTATTTCCGTGGACACCT	0.567													12	70					9.31168e-06	1.87104e-05	0.016723	1	0
USH2A	7399	broad.mit.edu	37	1	215972273	215972273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:215972273C>T	uc001hku.1	-	50	10321	c.9934G>A	c.(9934-9936)GGA>AGA	p.G3312R		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3312	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TACACCACTCCTTCTTCTCCA	0.502										HNSCC(13;0.011)			24	37					0	0	0.021523	0	0
SLC30A10	55532	broad.mit.edu	37	1	220100441	220100441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:220100441G>A	uc001hlw.2	-	2	858	c.647C>T	c.(646-648)TCC>TTC	p.S216F	SLC30A10_uc001hlu.1_RNA|SLC30A10_uc001hlx.2_5'UTR	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	216	Cytoplasmic (Potential).				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		GGTGTTGAAGGAATCACCTGC	0.333													9	37					0	0	0.006214	0	0
HHIPL2	79802	broad.mit.edu	37	1	222696144	222696144	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:222696144C>T	uc001hnh.1	-	9	2032	c.1974G>A	c.(1972-1974)CAG>CAA	p.Q658Q		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	658					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CAGACAAACCCTGGGCTGGGC	0.488													120	195					0	0	0.014410	0	0
MIXL1	83881	broad.mit.edu	37	1	226413370	226413370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:226413370G>A	uc010pvm.1	+	2	556	c.556G>A	c.(556-558)GAA>AAA	p.E186K		NM_031944	NP_114150	Q9H2W2	MIXL1_HUMAN	Mix-like homeobox protein 1	186					cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.109)		CTGCCTGCCCGAACCAAACGG	0.527													8	39					0	0	0.003080	0	0
RHOU	58480	broad.mit.edu	37	1	228879481	228879481	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:228879481C>T	uc001htf.2	+	3	1392	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	257					regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				ACTGCTGTTTCGTATGATGCT	0.408													9	29					0	0	0.006214	0	0
HEATR1	55127	broad.mit.edu	37	1	236749560	236749560	+	Silent	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:236749560T>C	uc001hyd.1	-	15	2033	c.1908A>G	c.(1906-1908)CTA>CTG	p.L636L		NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	636					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			AGCCTCTTAATAGAGGGTGCA	0.318													17	17					0	0	0.004990	0	0
RYR2	6262	broad.mit.edu	37	1	237789083	237789083	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:237789083G>C	uc001hyl.1	+	40	6265	c.6145G>C	c.(6145-6147)GAG>CAG	p.E2049Q		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2049	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AAAACCAGTTGAGAGTGACTC	0.433													13	14					0	0	0.013537	0	0
FMN2	56776	broad.mit.edu	37	1	240370323	240370323	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:240370323G>A	uc010pyd.1	+	5	2436	c.2211G>A	c.(2209-2211)AGG>AGA	p.R737R	FMN2_uc010pye.1_Silent_p.R741R	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	737					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GGCATCATAGGATTTTAGAGG	0.567													6	20					0	0	0.001984	0	0
CNST	163882	broad.mit.edu	37	1	246811154	246811154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:246811154C>T	uc001ibp.2	+	9	2029	c.1651C>T	c.(1651-1653)CTT>TTT	p.L551F	CNST_uc001ibo.3_Missense_Mutation_p.L551F	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	551					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						TTTGAACAGCCTTTTAGAAGG	0.428													15	70					0	0	0.004990	0	0
OR13G1	441933	broad.mit.edu	37	1	247836167	247836167	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:247836167G>A	uc001idi.1	-	1	177	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GTGTCAGAAGGAAAACATACA	0.418													4	23					0	0	0.009096	0	0
OR2L1P	26247	broad.mit.edu	37	1	248154310	248154310	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:248154310G>A	uc001idv.1	+	1	742	c.498G>A	c.(496-498)GTG>GTA	p.V166V	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						TCACTGTAGTGACTTTCTACT	0.517													17	57					0	0	0.006122	0	0
OR2M2	391194	broad.mit.edu	37	1	248343737	248343737	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr1:248343737C>T	uc010pzf.1	+	1	450	c.450C>T	c.(448-450)ATC>ATT	p.I150I		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCTCCTGGATCCTGGGCTCTA	0.438													92	78					0	0	0.014410	0	0
USP6NL	9712	broad.mit.edu	37	10	11504963	11504963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:11504963G>A	uc001ikt.3	-	15	2285	c.1964C>T	c.(1963-1965)TCT>TTT	p.S655F	USP6NL_uc001iks.1_Missense_Mutation_p.S672F	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	655						intracellular	Rab GTPase activator activity				0						AAACTGTGGAGAAGCAAAGCT	0.547													3	12					0	0	0.004672	0	0
UPF2	26019	broad.mit.edu	37	10	12043749	12043749	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:12043749A>C	uc001ila.2	-	5	2054	c.1580T>G	c.(1579-1581)ATT>AGT	p.I527S	UPF2_uc001ilb.2_Missense_Mutation_p.I527S|UPF2_uc001ilc.2_Missense_Mutation_p.I527S|UPF2_uc009xiz.1_Missense_Mutation_p.I527S	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	527	Potential.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				GTCATCATTAATTTCTAGATT	0.353													66	248					0	0	0.014410	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430903	37430903	+	Missense_Mutation	SNP	G	A	A	rs77379875		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:37430903G>A	uc001iza.1	+	7	1009	c.910G>A	c.(910-912)GAA>AAA	p.E304K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	360						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AACACCTAGGGAAATTACGAG	0.443													21	17					0	0	0.012319	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37488708	37488708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:37488708G>A	uc001iza.1	+	30	2701	c.2602G>A	c.(2602-2604)GAT>AAT	p.D868N		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	924						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAATTCTTGGGATTCTGAGGT	0.299													4	7					0	0	0.009096	0	0
PCDH15	65217	broad.mit.edu	37	10	55566538	55566539	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:55566538_55566539GG>AA	uc010qhq.1	-	36	5244_5245	c.4849_4850CC>TT	c.(4849-4851)CCT>TTT	p.P1617F	PCDH15_uc010qhr.1_Missense_Mutation_p.P1612F	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CACAGGGCAAGGGGCAAATGTA	0.455										HNSCC(58;0.16)			62	83					0	0	0.004672	0	0
C10orf27	219793	broad.mit.edu	37	10	72537079	72537079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:72537079C>T	uc001jrj.1	-	7	910	c.520G>A	c.(520-522)GAG>AAG	p.E174K	C10orf27_uc010qjm.1_Missense_Mutation_p.E175K|C10orf27_uc009xqh.1_RNA|C10orf27_uc010qjn.1_Missense_Mutation_p.E173K|C10orf27_uc009xqi.1_RNA|C10orf27_uc010qjo.1_Missense_Mutation_p.E194K	NM_152710	NP_689923	Q96M53	SPATL_HUMAN	stromal protein associated with thymii and lymph	174					cell differentiation|multicellular organismal development|spermatogenesis	cytosol				skin(1)	1						AGAGGCTCCTCCTTCTGCTCC	0.657													14	13					0	0	0.004007	0	0
HELLS	3070	broad.mit.edu	37	10	96333840	96333840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:96333840C>T	uc001kjt.2	+	8	706	c.601C>T	c.(601-603)CCA>TCA	p.P201S	HELLS_uc001kjs.2_Missense_Mutation_p.P185S|HELLS_uc009xul.2_Missense_Mutation_p.P201S|HELLS_uc009xum.2_Missense_Mutation_p.P201S|HELLS_uc009xun.2_Missense_Mutation_p.P77S|HELLS_uc009xuo.2_Missense_Mutation_p.P201S|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Missense_Mutation_p.P63S|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	201					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		CTTTTTTGACCCAGTCCGGAA	0.398													23	43					0	0	0.004656	0	0
DMBT1	1755	broad.mit.edu	37	10	124352087	124352087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:124352087G>A	uc001lgk.1	+	20	2582	c.2476G>A	c.(2476-2478)GAA>AAA	p.E826K	DMBT1_uc001lgl.1_Missense_Mutation_p.E816K|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.E826K|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.E439K	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	826	SRCR 6.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGGCCATCATGAAGATGCTGG	0.537													17	33					0	0	0.006122	0	0
SYCE1	93426	broad.mit.edu	37	10	135372393	135372393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:135372393C>T	uc001lno.2	-	4	364	c.259G>A	c.(259-261)GAA>AAA	p.E87K	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_5'UTR|SYCE1_uc009ybn.2_Missense_Mutation_p.E87K|SYCE1_uc001lnn.2_Missense_Mutation_p.E51K	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	87	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GAGTCCAGTTCCTTCTGCAGG	0.522													6	11					0	0	0.003080	0	0
OR5P3	120066	broad.mit.edu	37	11	7847265	7847265	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:7847265G>A	uc010rbg.1	-	1	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTTTCCTTAGGAAGCTCATGA	0.507													28	31					0	0	0.005443	0	0
MPPED2	744	broad.mit.edu	37	11	30439175	30439175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:30439175G>A	uc001msr.2	-	4	662	c.542C>T	c.(541-543)CCG>CTG	p.P181L	MPPED2_uc001msq.3_Missense_Mutation_p.P181L|MPPED2_uc009yji.2_Missense_Mutation_p.P55L	NM_001584	NP_001575	Q15777	MPPD2_HUMAN	metallophosphoesterase domain containing 2	181					nervous system development		hydrolase activity|metal ion binding			skin(1)	1						ATTAAACCACGGGGTCCTTTG	0.527													14	18					0	0	0.003163	0	0
AMBRA1	55626	broad.mit.edu	37	11	46419286	46419286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:46419286G>A	uc010rgu.1	-	18	3971	c.3611C>T	c.(3610-3612)TCC>TTC	p.S1204F	AMBRA1_uc010rgt.1_3'UTR|AMBRA1_uc009ylc.1_Missense_Mutation_p.S1175F|AMBRA1_uc001ncu.1_Missense_Mutation_p.S1114F|AMBRA1_uc001ncv.2_Missense_Mutation_p.S1207F|AMBRA1_uc001ncw.2_Missense_Mutation_p.S1085F|AMBRA1_uc001ncx.2_Missense_Mutation_p.S1144F	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	1204					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		CTGGGGTGAGGAGGTGTGGGC	0.667													5	15					0	0	0.001984	0	0
OR4C13	283092	broad.mit.edu	37	11	49974376	49974376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:49974376G>A	uc010rhz.1	+	1	402	c.402G>A	c.(400-402)ATG>ATA	p.M134I		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CCACCGTCATGAAGCAGCATG	0.463													22	25					0	0	0.021523	0	0
OR4A5	81318	broad.mit.edu	37	11	51412063	51412063	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:51412063G>A	uc001nhi.1	-	1	333	c.333C>T	c.(331-333)TTC>TTT	p.F111F		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				CCACCAGAAGGAAGACCTCAG	0.453													6	37					0	0	0.001168	0	0
FAM111B	374393	broad.mit.edu	37	11	58892965	58892965	+	Silent	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:58892965A>G	uc001nnl.2	+	4	1638	c.1395A>G	c.(1393-1395)CAA>CAG	p.Q465Q	FAM111B_uc001nnm.2_Silent_p.Q435Q|FAM111B_uc010rko.1_Silent_p.Q435Q	NM_198947	NP_945185	Q6SJ93	F111B_HUMAN	hypothetical protein LOC374393 isoform a	465							catalytic activity			ovary(2)	2						GGTTCATGCAATGGGACAATA	0.373													3	82					0	0	0.004672	0	0
OR4D10	390197	broad.mit.edu	37	11	59245552	59245552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:59245552C>T	uc001nnz.1	+	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CTCCTGGTGTCCTACATAGTC	0.483													13	28					0	0	0.016723	0	0
TCN1	6947	broad.mit.edu	37	11	59620483	59620483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:59620483C>T	uc001noj.2	-	9	1365	c.1267G>A	c.(1267-1269)GGA>AGA	p.G423R		NM_001062	NP_001053	P20061	TCO1_HUMAN	transcobalamin I precursor	423					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular region	cobalamin binding			ovary(2)	2		all_epithelial(135;0.198)			Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AAGTTTTCTCCATTGCGGACA	0.413													36	56					0	0	0.019004	0	0
AHNAK	79026	broad.mit.edu	37	11	62295721	62295721	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:62295721G>A	uc001ntl.2	-	5	6468	c.6168C>T	c.(6166-6168)TTC>TTT	p.F2056F	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2056					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CAGGCATGCTGAACTTGGGCA	0.512													44	205					0	0	0.014410	0	0
DPP3	10072	broad.mit.edu	37	11	66262851	66262851	+	Missense_Mutation	SNP	C	T	T	rs145692426		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:66262851C>T	uc001oig.1	+	14	1530	c.1468C>T	c.(1468-1470)CGG>TGG	p.R490W	DPP3_uc001oif.1_Missense_Mutation_p.R490W|DPP3_uc010rpe.1_Missense_Mutation_p.R479W|DPP3_uc001oih.1_5'Flank	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	490					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						GAGCTGGTATCGGAGCGGGGA	0.622													4	12					0	0	0.009096	0	0
USP35	57558	broad.mit.edu	37	11	77920580	77920580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:77920580C>T	uc009yva.1	+	10	1925	c.1679C>T	c.(1678-1680)GCC>GTC	p.A560V	USP35_uc001oze.2_Missense_Mutation_p.A316V|USP35_uc001ozc.2_Missense_Mutation_p.A128V|USP35_uc010rsp.1_5'UTR|USP35_uc001ozd.2_Missense_Mutation_p.A171V|USP35_uc001ozf.2_Missense_Mutation_p.A291V	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	560					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			GAGCCCCCGGCCCCAAGTTCA	0.597													14	14					0	0	0.020292	0	0
DLG2	1740	broad.mit.edu	37	11	83810091	83810091	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:83810091C>T	uc001paj.2	-	5	613	c.310_splice	c.e5-1	p.G104_splice	DLG2_uc001pai.2_Splice_Site_p.G53_splice|DLG2_uc010rsy.1_Splice_Site_p.G71_splice|DLG2_uc010rsz.1_Splice_Site_p.G104_splice|DLG2_uc010rta.1_Splice_Site_p.G104_splice|DLG2_uc001pak.2_Splice_Site_p.G209_splice|DLG2_uc010rtb.1_Splice_Site_p.G71_splice|DLG2_uc001pal.1_Splice_Site_p.G104_splice|DLG2_uc001pam.1_Splice_Site_p.G143_splice	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2							cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CAGAATTCCCCTATAGAAACA	0.413													10	12					0	0	0.010729	0	0
FOLH1B	219595	broad.mit.edu	37	11	89424676	89424676	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:89424676C>T	uc001pda.2	+	12	1552	c.1026C>T	c.(1024-1026)CTC>CTT	p.L342L		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	342					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GCGAGAGACTCCAGGACTTTG	0.219													8	32					0	0	0.003080	0	0
ENDOD1	23052	broad.mit.edu	37	11	94861658	94861658	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:94861658C>T	uc001pfh.2	+	2	493	c.418C>T	c.(418-420)CAA>TAA	p.Q140*		NM_015036	NP_055851	O94919	ENDD1_HUMAN	endonuclease domain containing 1 precursor	140						extracellular region	endonuclease activity|metal ion binding|nucleic acid binding				0		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.00824)				TTCTGATTACCAAAGAGGACA	0.488													4	49					0	0	0.001168	0	0
TRPC6	7225	broad.mit.edu	37	11	101342876	101342876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:101342876C>T	uc001pgk.3	-	8	2622	c.2197G>A	c.(2197-2199)GAA>AAA	p.E733K	TRPC6_uc009ywy.2_Missense_Mutation_p.E617K|TRPC6_uc009ywz.1_Missense_Mutation_p.E678K	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	733	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		ACCTCAATTTCCTGGAATGAA	0.343													31	38					0	0	0.013726	0	0
FAM55D	54827	broad.mit.edu	37	11	114453715	114453715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:114453715G>A	uc001ppc.2	-	3	306	c.125C>T	c.(124-126)TCC>TTC	p.S42F	FAM55D_uc001ppd.2_5'UTR	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	42						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		GTAATGGAGGGAGATGGATAA	0.383													16	78					0	0	0.004990	0	0
UBE4A	9354	broad.mit.edu	37	11	118239488	118239488	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:118239488C>T	uc001psw.2	+	3	393	c.264C>T	c.(262-264)ATC>ATT	p.I88I	UBE4A_uc001psv.2_Silent_p.I88I	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	88					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		ATCACATGATCCAAAGGATCT	0.433													16	90					0	0	0.004990	0	0
VWA5A	4013	broad.mit.edu	37	11	123993680	123993680	+	Silent	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:123993680A>G	uc001pzu.2	+	8	983	c.774A>G	c.(772-774)GGA>GGG	p.G258G	VWA5A_uc001pzr.2_Silent_p.G258G|VWA5A_uc001pzs.2_Silent_p.G258G|VWA5A_uc010sae.1_Silent_p.G274G|VWA5A_uc001pzt.2_Silent_p.G258G	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	258										upper_aerodigestive_tract(1)|ovary(1)	2						ATTTGATGGGAGATCCATCTG	0.393													9	26					0	0	0.008291	0	0
CACNA1C	775	broad.mit.edu	37	12	2721143	2721143	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:2721143G>A	uc009zdu.1	+	30	4165	c.3852G>A	c.(3850-3852)GTG>GTA	p.V1284V	CACNA1C_uc009zdv.1_Silent_p.V1261V|CACNA1C_uc001qkb.2_Silent_p.V1264V|CACNA1C_uc001qkc.2_Silent_p.V1264V|CACNA1C_uc001qke.2_Silent_p.V1264V|CACNA1C_uc001qkf.2_Silent_p.V1264V|CACNA1C_uc001qjz.2_Silent_p.V1264V|CACNA1C_uc001qkd.2_Silent_p.V1264V|CACNA1C_uc001qkg.2_Silent_p.V1264V|CACNA1C_uc009zdw.1_Silent_p.V1264V|CACNA1C_uc001qkh.2_Silent_p.V1264V|CACNA1C_uc001qkl.2_Silent_p.V1284V|CACNA1C_uc001qkn.2_Silent_p.V1264V|CACNA1C_uc001qko.2_Silent_p.V1284V|CACNA1C_uc001qkp.2_Silent_p.V1264V|CACNA1C_uc001qkr.2_Silent_p.V1264V|CACNA1C_uc001qku.2_Silent_p.V1264V|CACNA1C_uc001qkq.2_Silent_p.V1264V|CACNA1C_uc001qks.2_Silent_p.V1264V|CACNA1C_uc001qkt.2_Silent_p.V1264V|CACNA1C_uc001qka.1_Silent_p.V799V|CACNA1C_uc001qki.1_Silent_p.V1000V|CACNA1C_uc001qkj.1_Silent_p.V1000V|CACNA1C_uc001qkk.1_Silent_p.V1000V|CACNA1C_uc001qkm.1_Silent_p.V1000V	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1284	Helical; Name=S2 of repeat IV; (Potential).|IV.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCTTCACCGTGGAGATGATCC	0.552													5	18					0	0	0.001984	0	0
CD4	920	broad.mit.edu	37	12	6925279	6925279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:6925279C>T	uc001qqv.1	+	6	910	c.665C>T	c.(664-666)TCC>TTC	p.S222F	CD4_uc009zez.1_3'UTR|CD4_uc009zfa.1_RNA|CD4_uc009zfb.1_RNA|CD4_uc010sfj.1_5'UTR|CD4_uc009zfc.1_Missense_Mutation_p.S43F|CD4_uc010sfk.1_5'UTR|CD4_uc010sfl.1_5'UTR|CD4_uc010sfm.1_5'UTR	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	222	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				GTGGAGTTCTCCTTCCCACTC	0.562													28	43					0	0	0.005443	0	0
CD4	920	broad.mit.edu	37	12	6927668	6927668	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:6927668G>C	uc001qqv.1	+	8	1483	c.1238G>C	c.(1237-1239)GGG>GCG	p.G413A	CD4_uc010sfj.1_Missense_Mutation_p.G140A|CD4_uc009zfc.1_Missense_Mutation_p.G234A|CD4_uc010sfk.1_Missense_Mutation_p.G140A|CD4_uc010sfl.1_Missense_Mutation_p.G140A|CD4_uc010sfm.1_Missense_Mutation_p.G140A	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	413	Helical; (Potential).				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				CTTTTCATTGGGCTAGGCATC	0.607													5	40					0	0	0.001168	0	0
A2M	2	broad.mit.edu	37	12	9243923	9243923	+	Silent	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:9243923A>G	uc001qvk.1	-	19	2456	c.2343T>C	c.(2341-2343)TCT>TCC	p.S781S	A2M_uc009zgk.1_Silent_p.S631S	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	781					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	AGGCAGTGGAAGAGATACCAA	0.567													5	108					0	0	0.003080	0	0
PZP	5858	broad.mit.edu	37	12	9317861	9317861	+	Silent	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:9317861A>G	uc001qvl.2	-	19	2390	c.2361T>C	c.(2359-2361)TCT>TCC	p.S787S	PZP_uc009zgl.2_Silent_p.S656S|PZP_uc010sgo.1_RNA|PZP_uc009zgm.1_Silent_p.S119S	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						AGGCAGTGGAAGAGATACCAA	0.562													13	42					0	0	0.020292	0	0
CD69	969	broad.mit.edu	37	12	9907752	9907752	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:9907752A>G	uc001qwk.2	-	3	374	c.293T>C	c.(292-294)TTT>TCT	p.F98S	CD69_uc010sgu.1_Missense_Mutation_p.F98S|CD69_uc010sgv.1_Missense_Mutation_p.F98S	NM_001781	NP_001772	Q07108	CD69_HUMAN	CD69 molecule	98	C-type lectin.|Extracellular (Potential).					integral to plasma membrane	sugar binding|transmembrane receptor activity				0						AGTAGAAATAAAGTAGCATTT	0.438													38	51					0	0	0.021022	0	0
PRB4	5545	broad.mit.edu	37	12	11461475	11461475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:11461475C>T	uc001qzf.1	-	3	476	c.442G>A	c.(442-444)GGA>AGA	p.G148R	PRB4_uc001qzt.2_Missense_Mutation_p.G148R	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	211	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|9.					extracellular region				ovary(1)	1						TGGTTACCTCCTTGTGGGGGT	0.607										HNSCC(22;0.051)			64	96					0	0	0.014410	0	0
ARID2	196528	broad.mit.edu	37	12	46230641	46230641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:46230641C>T	uc001ros.1	+	8	890	c.890C>T	c.(889-891)TCC>TTC	p.S297F	ARID2_uc001ror.2_Missense_Mutation_p.S297F|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_5'Flank|ARID2_uc001rot.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	297					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AGAAATCTTTCCTTTGAGGAG	0.398													23	26					0	0	0.021523	0	0
APOF	319	broad.mit.edu	37	12	56755494	56755494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:56755494G>A	uc001sle.1	-	2	550	c.496C>T	c.(496-498)CTC>TTC	p.L166F		NM_001638	NP_001629	Q13790	APOF_HUMAN	apolipoprotein F precursor	166					cholesterol metabolic process	high-density lipoprotein particle|low-density lipoprotein particle	cholesterol binding|lipid transporter activity|receptor binding				0						TCTGTCGGGAGGGAGCGCCCG	0.582													3	5					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	12	80771790	80771790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:80771790C>T	uc009zsg.1	+	13	1238	c.637C>T	c.(637-639)CTC>TTC	p.L213F	uc001szd.2_Missense_Mutation_p.L352F					RecName: Full=Uncharacterized protein C12orf64;																		TATGTACACTCTCCAGGAACC	0.413													5	6					0	0	0.014758	0	0
SLC17A8	246213	broad.mit.edu	37	12	100813728	100813728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:100813728G>A	uc010svi.1	+	12	1874	c.1561G>A	c.(1561-1563)GGA>AGA	p.G521R	SLC17A8_uc009ztx.2_Missense_Mutation_p.G471R	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	521	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						GGAGAAATGTGGAATCATTGA	0.483													17	24					0	0	0.004990	0	0
STAB2	55576	broad.mit.edu	37	12	104056642	104056642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:104056642G>A	uc001tjw.2	+	18	2074	c.1888G>A	c.(1888-1890)GAT>AAT	p.D630N		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	630	Extracellular (Potential).|FAS1 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TCTGGCAAATGATGTGGCAAT	0.453													30	34					0	0	0.010818	0	0
TMEM119	338773	broad.mit.edu	37	12	108985650	108985650	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:108985650C>T	uc001tng.2	-	2	673	c.510G>A	c.(508-510)CGG>CGA	p.R170R	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	170	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						CCTGGAGCTGCCGGGAGGAAT	0.607													8	39					0	0	0.006214	0	0
C12orf51	283450	broad.mit.edu	37	12	112622448	112622448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:112622448G>A	uc009zwc.2	-	54	9074	c.9056C>T	c.(9055-9057)ACC>ATC	p.T3019I		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TGGCTTCTTGGTGTCTTCTTC	0.622													24	48					0	0	0.016522	0	0
LRRC43	254050	broad.mit.edu	37	12	122685332	122685332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:122685332G>A	uc009zxm.2	+	10	1685	c.1660G>A	c.(1660-1662)GAG>AAG	p.E554K	LRRC43_uc001ubw.3_Missense_Mutation_p.E369K|LRRC43_uc009zxn.2_Missense_Mutation_p.E315K|B3GNT4_uc001ubx.2_5'Flank|B3GNT4_uc001uby.2_5'Flank	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	554											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		GCCGCCCAAGGAGCTCCGGCA	0.672													7	53					0	0	0.001984	0	0
GPR81	27198	broad.mit.edu	37	12	123214635	123214635	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:123214635C>T	uc001ucz.2	-	1	495	c.252G>A	c.(250-252)GGG>GGA	p.G84G	GPR81_uc001ucw.1_RNA	NM_032554	NP_115943	Q9BXC0	HCAR1_HUMAN	G protein-coupled receptor 81	84	Extracellular (Potential).				response to estradiol stimulus	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.14e-05)|Epithelial(86;3.25e-05)|BRCA - Breast invasive adenocarcinoma(302;0.197)		AGGGAATGTCCCCAAAAGCCC	0.532													4	16					0	0	0.009096	0	0
DNAH10	196385	broad.mit.edu	37	12	124401149	124401149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:124401149G>A	uc001uft.3	+	62	10539	c.10514G>A	c.(10513-10515)GGA>GAA	p.G3505E		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3505	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GTCTCCCAAGGACGGCAGTTT	0.438													16	18					0	0	0.004007	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834404	125834404	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr12:125834404G>A	uc001uhe.1	+	2	467	c.459G>A	c.(457-459)ACG>ACA	p.T153T		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	153	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GTGACCTTACGGAAGATCTAC	0.552													20	80					0	0	0.008871	0	0
TPTE2	93492	broad.mit.edu	37	13	20000571	20000571	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr13:20000571G>A	uc001umd.2	-	19	1600	c.1389C>T	c.(1387-1389)TTC>TTT	p.F463F	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Silent_p.F352F|TPTE2_uc001ume.2_Silent_p.F386F|TPTE2_uc009zzm.2_Silent_p.F134F|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Silent_p.F134F	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	463	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TCACCGAAGAGAAAAACTGCA	0.358													4	74					0	0	0.001168	0	0
CCNA1	8900	broad.mit.edu	37	13	37011836	37011836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr13:37011836C>T	uc001uvr.3	+	3	718	c.368C>T	c.(367-369)CCT>CTT	p.P123L	CCNA1_uc010teo.1_Missense_Mutation_p.P79L|CCNA1_uc010abq.2_Missense_Mutation_p.P79L|CCNA1_uc010abp.2_Missense_Mutation_p.P79L|CCNA1_uc001uvs.3_Missense_Mutation_p.P122L|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	123					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding	p.P123>S(1)		lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		AAAGCACTCCCTGACTGTGGG	0.493													33	38					0	0	0.010818	0	0
CSNK1A1L	122011	broad.mit.edu	37	13	37679199	37679199	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr13:37679199C>T	uc001uwm.1	-	1	603	c.195G>A	c.(193-195)ACG>ACA	p.T65T		NM_145203	NP_660204	Q8N752	KC1AL_HUMAN	casein kinase 1, alpha 1-like	65	Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)	1		Lung NSC(96;7.97e-05)|Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.109)		all cancers(112;3.58e-07)|Epithelial(112;1.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00695)|BRCA - Breast invasive adenocarcinoma(63;0.0117)|GBM - Glioblastoma multiforme(144;0.0407)		CTTGAAGAATCGTGTAGAGTT	0.532													16	65					0	0	0.006122	0	0
SETDB2	83852	broad.mit.edu	37	13	50055134	50055134	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr13:50055134C>T	uc001vcz.2	+	9	1980	c.1074C>T	c.(1072-1074)AAC>AAT	p.N358N	SETDB2_uc010adg.2_Silent_p.N334N|SETDB2_uc001vcy.3_Silent_p.N346N|SETDB2_uc010adh.2_Silent_p.N346N|SETDB2_uc001vda.2_Silent_p.N346N	NM_031915	NP_114121	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2 isoform a	358	Pre-SET.				cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		TGTGTCAAAACCGAGTTGTCC	0.413													12	50					0	0	0.016723	0	0
UTP14C	9724	broad.mit.edu	37	13	52604412	52604413	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr13:52604412_52604413CC>TT	uc001vgb.2	+	2	2007_2008	c.1472_1473CC>TT	c.(1471-1473)GCC>GTT	p.A491V	UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	491					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		GAGGAACCTGCCCCAGAAGAAG	0.465													28	104					0	0	0.004672	0	0
NEK5	341676	broad.mit.edu	37	13	52660478	52660478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr13:52660478C>T	uc001vge.2	-	16	1554	c.1414G>A	c.(1414-1416)GAA>AAA	p.E472K		NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	472							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		TGGCGTATTTCCTCTAACTGC	0.358													17	28					0	0	0.010504	0	0
MYO16	23026	broad.mit.edu	37	13	109793613	109793613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr13:109793613C>T	uc001vqt.1	+	32	5113	c.4987C>T	c.(4987-4989)CCC>TCC	p.P1663S	MYO16_uc010agk.1_Missense_Mutation_p.P1685S	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1663	Pro-rich.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CTACAGCCCTCCCAGCTCCAG	0.667													5	21					0	0	0.014758	0	0
COL4A1	1282	broad.mit.edu	37	13	110839489	110839489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr13:110839489G>A	uc001vqw.3	-	25	1846	c.1724C>T	c.(1723-1725)TCG>TTG	p.S575L	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	575	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			ACATACCGGCGAGCCCTTGGG	0.488													30	81					0	0	0.017118	0	0
COL4A1	1282	broad.mit.edu	37	13	110845189	110845189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr13:110845189G>A	uc001vqw.3	-	23	1575	c.1453C>T	c.(1453-1455)CCG>TCG	p.P485S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	485	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			ATTTCTCCCGGGGGTCCCTGT	0.488													21	48					0	0	0.021523	0	0
OR11H12	440153	broad.mit.edu	37	14	19378035	19378035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:19378035C>T	uc010tkp.1	+	1	442	c.442C>T	c.(442-444)CCT>TCT	p.P148S		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	148	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTTGCTCTATCCTAATATCAT	0.448													8	189					0	0	0.016522	0	0
OR4M1	441670	broad.mit.edu	37	14	20249141	20249141	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:20249141C>T	uc010tku.1	+	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCTATGCCTTCCTTCTGGCCT	0.473													37	73					0	0	0.008740	0	0
HECTD1	25831	broad.mit.edu	37	14	31614085	31614085	+	Silent	SNP	A	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:31614085A>T	uc001wrc.1	-	16	3048	c.2559T>A	c.(2557-2559)CGT>CGA	p.R853R	HECTD1_uc001wrd.1_Silent_p.R368R	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	853					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		CCACTACTCCACGAGGCATGC	0.353													4	25					0	0	0.009096	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36096368	36096368	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:36096368T>G	uc001wti.2	-	33	5658	c.5267A>C	c.(5266-5268)CAA>CCA	p.Q1756P	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Missense_Mutation_p.Q1756P|RALGAPA1_uc010tpv.1_Missense_Mutation_p.Q1769P|RALGAPA1_uc010tpw.1_Missense_Mutation_p.Q1803P	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1756	Minimal domain that binds to TCF3/E12 (By similarity).				activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						CTGAGGTTTTTGAGGTATTGG	0.338													13	32					0	0	0.008871	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724535	38724535	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:38724535G>A	uc001wum.1	-	1	1040	c.693C>T	c.(691-693)ATC>ATT	p.I231I		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	231	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		AGCGAGCGCCGATTTCGTCCG	0.632													21	98					0	0	0.016522	0	0
KCNH5	27133	broad.mit.edu	37	14	63417236	63417236	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:63417236G>A	uc001xfx.2	-	7	1035	c.984C>T	c.(982-984)CTC>CTT	p.L328L	KCNH5_uc001xfy.2_Silent_p.L328L|KCNH5_uc001xfz.1_Silent_p.L270L|KCNH5_uc001xga.2_Silent_p.L270L	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	328	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CCAGTCGTAAGAGACGCACCA	0.453													16	25					0	0	0.006122	0	0
RBM25	58517	broad.mit.edu	37	14	73566103	73566103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:73566103C>T	uc001xno.2	+	8	953	c.745C>T	c.(745-747)CCA>TCA	p.P249S	RBM25_uc001xnn.3_Missense_Mutation_p.P249S|RBM25_uc010ttu.1_Missense_Mutation_p.P249S|RBM25_uc001xnp.2_Missense_Mutation_p.P44S	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	249					apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		CCGCAGATTTCCAGTGGCCCC	0.358													25	38					0	0	0.007291	0	0
PAPLN	89932	broad.mit.edu	37	14	73730438	73730438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:73730438C>T	uc010ttx.1	+	19	2972	c.2809C>T	c.(2809-2811)CCG>TCG	p.P937S	PAPLN_uc001xnw.3_Missense_Mutation_p.P910S|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.P921S|PAPLN_uc010arm.2_Missense_Mutation_p.P136S|PAPLN_uc010arn.2_Missense_Mutation_p.P137S	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	937	Ig-like C2-type 1.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		CGACACTGCCCCGGAATCCCA	0.642													10	18					0	0	0.006214	0	0
ANGEL1	23357	broad.mit.edu	37	14	77255601	77255601	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:77255601G>A	uc001xsv.2	-	10	2096	c.1983C>T	c.(1981-1983)GCC>GCT	p.A661A	uc001xsu.1_5'Flank|ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	661										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		TCCCGAAGCTGGCTAGCAGGC	0.567													34	56					0	0	0.019004	0	0
KCNK13	56659	broad.mit.edu	37	14	90651046	90651046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:90651046C>T	uc001xye.1	+	2	1368	c.926C>T	c.(925-927)TCA>TTA	p.S309L		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	309	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				CTCTTGCGATCACGCAGGAAC	0.577													29	34					0	0	0.010818	0	0
KIAA1409	57578	broad.mit.edu	37	14	94048633	94048633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:94048633C>T	uc001ybv.1	+	17	2298	c.2215C>T	c.(2215-2217)CCT>TCT	p.P739S	KIAA1409_uc001ybs.1_Missense_Mutation_p.P739S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	916						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GGAGGAGAATCCTGCAAGCAA	0.572													6	28					0	0	0.001168	0	0
KIAA1409	57578	broad.mit.edu	37	14	94079186	94079186	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:94079186C>T	uc001ybv.1	+	25	3416	c.3333C>T	c.(3331-3333)CTC>CTT	p.L1111L	KIAA1409_uc001ybs.1_Silent_p.L1089L	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1266						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AGGACCTGCTCCCAGAAGACG	0.502													4	46					0	0	0.009096	0	0
TECPR2	9895	broad.mit.edu	37	14	102918804	102918804	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:102918804C>T	uc001ylw.1	+	16	3628	c.3480C>T	c.(3478-3480)CCC>CCT	p.P1160P	TECPR2_uc010awl.2_Silent_p.P1160P|TECPR2_uc010txx.1_Silent_p.P323P	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	1160							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						AGTCGCGGCCCTCCACGGTGC	0.652													9	11					0	0	0.008291	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418538	105418539	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:105418538_105418539CC>TT	uc010axc.1	-	7	3369_3370	c.3249_3250GG>AA	c.(3247-3252)AAGGTG>AAAATG	p.V1084M	AHNAK2_uc001ypx.2_Missense_Mutation_p.V984M	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1084						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGCATCTCCACCTTGGGCAAGT	0.619													52	125					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106641552	106641552	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:106641552C>T	uc010tyt.1	-	1021		c.24447_splice	c.e1021+1							Parts of antibodies, mostly variable regions.												0						TGTGGGTTTTCACACTGTGTC	0.498													42	65					0	0	0.013114	0	0
CATSPER2P1	440278	broad.mit.edu	37	15	44029095	44029095	+	RNA	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr15:44029095G>A	uc001zss.2	-	4		c.686C>T				NR_002318				Homo sapiens cation channel, sperm associated 2 pseudogene 1, mRNA (cDNA clone IMAGE:5294645).												0						AGAAAAGTTGGATAGCCACTT	0.433													6	40					0	0	0.010729	0	0
DUOX1	53905	broad.mit.edu	37	15	45437255	45437255	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr15:45437255T>C	uc001zus.1	+	19	2645	c.2299T>C	c.(2299-2301)TTT>CTT	p.F767L	DUOX1_uc001zut.1_Missense_Mutation_p.F767L|DUOX1_uc010bee.1_Missense_Mutation_p.F147L|DUOX1_uc001zuu.2_5'Flank	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	767	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CCTGGAGACCTTTTTCAGGCA	0.587													3	44					0	0	0.009096	0	0
SQRDL	58472	broad.mit.edu	37	15	45965929	45965929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr15:45965929C>T	uc001zvt.2	+	6	773	c.584C>T	c.(583-585)CCA>CTA	p.P195L	SQRDL_uc001zvu.2_Missense_Mutation_p.P195L|SQRDL_uc001zvv.2_Missense_Mutation_p.P195L	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	195							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		TTCACCTTCCCAAATACTCCA	0.463													5	34					0	0	0.014758	0	0
ULK3	25989	broad.mit.edu	37	15	75131034	75131034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr15:75131034G>A	uc010bkf.1	-	10	1158	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F	ULK3_uc010ulp.1_Missense_Mutation_p.S261F|ULK3_uc010ulq.1_Missense_Mutation_p.S362F|ULK3_uc010ulr.1_Missense_Mutation_p.S234F|ULK3_uc002ayv.2_Missense_Mutation_p.S351F|ULK3_uc010uls.1_Missense_Mutation_p.S234F	NM_001099436	NP_001092906	Q6PHR2	ULK3_HUMAN	unc-51-like kinase 3	351						cytoplasm	ATP binding|protein serine/threonine kinase activity			breast(2)	2						GGCCTGATTGGAAGAGGAGAC	0.647													7	8					0	0	0.006214	0	0
PTPN9	5780	broad.mit.edu	37	15	75798234	75798234	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr15:75798234G>A	uc002bal.2	-	7	1258	c.750C>T	c.(748-750)TTC>TTT	p.F250F		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	250						cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						CCTGGGGTAGGAACTGGAAAT	0.537													8	29					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	15	76074470	76074470	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr15:76074470A>G	uc010umm.1	+	8	649	c.572A>G	c.(571-573)CAG>CGG	p.Q191R	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CGGTTACAGCAGACCATAAAG	0.577													4	14					0	0	0.014758	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635163	82635163	+	RNA	SNP	C	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr15:82635163C>G	uc002bgx.2	-	5		c.417G>C						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						CCCTGTTCTCCGCAGCCCGAA	0.478													5	2					0	0	0.014758	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92459295	92459295	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr15:92459295T>C	uc002bqx.2	+	2	454	c.253T>C	c.(253-255)TTC>CTC	p.F85L	SLCO3A1_uc002bqy.2_Missense_Mutation_p.F85L|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.F27L	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	85	Helical; Name=2; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			CGCTAGCAGCTTCGAGATCGG	0.647													9	25					0	0	0.004482	0	0
PCSK6	5046	broad.mit.edu	37	15	101906451	101906451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr15:101906451G>A	uc002bwy.2	-	14	2122	c.1808C>T	c.(1807-1809)ACC>ATC	p.T603I	PCSK6_uc010bpd.2_Missense_Mutation_p.T399I|PCSK6_uc010bpe.2_Missense_Mutation_p.T603I|PCSK6_uc002bxa.2_Missense_Mutation_p.T603I|PCSK6_uc002bxb.2_Missense_Mutation_p.T603I|PCSK6_uc002bxc.1_Missense_Mutation_p.T603I|PCSK6_uc002bxd.1_Missense_Mutation_p.T603I|PCSK6_uc002bxe.2_Missense_Mutation_p.T603I|PCSK6_uc002bxf.1_Missense_Mutation_p.T103I	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	603	Homo B/P.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GATTTCCAAGGTCCACTGCCC	0.502													8	15					0	0	0.004482	0	0
WFIKKN1	117166	broad.mit.edu	37	16	683960	683960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:683960G>A	uc002cht.1	+	2	1792	c.1550G>A	c.(1549-1551)GGC>GAC	p.G517D	WFIKKN1_uc002chs.1_3'UTR|uc010uuk.1_5'Flank	NM_053284	NP_444514	Q96NZ8	WFKN1_HUMAN	WAP, follistatin/kazal, immunoglobulin, kunitz	517	NTR.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity				0		Hepatocellular(780;0.00335)				CTGGACGCCGGCAGCTACGTC	0.687													4	5					0	0	0.009096	0	0
MMP25	64386	broad.mit.edu	37	16	3100339	3100339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:3100339G>A	uc002cth.2	+	4	690	c.453G>A	c.(451-453)ATG>ATA	p.M151I	MMP25_uc002cti.1_Missense_Mutation_p.M87I	NM_022468	NP_071913	Q9NPA2	MMP25_HUMAN	matrix metalloproteinase 25 preproprotein	151					inflammatory response|proteolysis	anchored to membrane|cell surface|plasma membrane|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0						CCTGGGGCATGGAGTCAGGCC	0.637													17	28					0	0	0.004007	0	0
OR1F2P	26184	broad.mit.edu	37	16	3265799	3265799	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:3265799C>T	uc010uwv.1	+	1	238	c.90C>T	c.(88-90)CTC>CTT	p.L30L		NR_002169				RecName: Full=Olfactory receptor 1F2; AltName: Full=OLFmf2;												0						ACTTCTTCCTCAGCAACATGT	0.542													8	27					0	0	0.006214	0	0
GLYR1	84656	broad.mit.edu	37	16	4862212	4862212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:4862212G>A	uc002cxx.3	-	13	1194	c.1157C>T	c.(1156-1158)CCC>CTC	p.P386L	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Missense_Mutation_p.P300L|GLYR1_uc002cya.2_Missense_Mutation_p.P380L|GLYR1_uc010uxv.1_Missense_Mutation_p.P305L	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	386					pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						CCCTGAGACGGGGGCTTCCAG	0.592													7	13					0	0	0.004482	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10524938	10524938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:10524938C>T	uc002czu.2	+	3	688	c.461C>T	c.(460-462)TCC>TTC	p.S154F	ATF7IP2_uc002czv.2_Missense_Mutation_p.S154F|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Missense_Mutation_p.S154F|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	154					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GTAACAAGATCCCTTTTTGAG	0.448													14	49					0	0	0.020292	0	0
KIAA0430	9665	broad.mit.edu	37	16	15705448	15705448	+	Splice_Site	SNP	C	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:15705448C>G	uc002ddr.2	-	18	3810	c.3617_splice	c.e18+1	p.W1206_splice	KIAA0430_uc002ddq.2_Splice_Site_p.W1040_splice|KIAA0430_uc010uzv.1_Splice_Site_p.W1202_splice|KIAA0430_uc010uzw.1_Splice_Site_p.W1205_splice	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1							peroxisome	nucleotide binding|RNA binding				0						CATCAACTCACCAGTGATAAG	0.368													3	35					0	0	0.004672	0	0
MYH11	4629	broad.mit.edu	37	16	15835634	15835634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:15835634C>T	uc002ddy.2	-	21	2742	c.2635G>A	c.(2635-2637)GAA>AAA	p.E879K	MYH11_uc002ddv.2_Missense_Mutation_p.E886K|MYH11_uc002ddw.2_Missense_Mutation_p.E879K|MYH11_uc002ddx.2_Missense_Mutation_p.E886K|MYH11_uc010bvg.2_Missense_Mutation_p.E711K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	879	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						TGCTTCTGTTCCAGCTCCTTA	0.612			T	CBFB	AML								31	95					0	0	0.015359	0	0
TMC7	79905	broad.mit.edu	37	16	19058495	19058495	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:19058495G>A	uc002dfq.2	+	12	1794	c.1664G>A	c.(1663-1665)TGG>TAG	p.W555*	TMC7_uc002dfp.2_Nonsense_Mutation_p.W555*|TMC7_uc010vap.1_Nonsense_Mutation_p.W445*	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	555	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						ACCATCTGCTGGATCGGAGCC	0.507													76	184					0	0	0.014410	0	0
ACSM1	116285	broad.mit.edu	37	16	20648710	20648710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:20648710G>A	uc002dhm.1	-	8	1248	c.1180C>T	c.(1180-1182)CCA>TCA	p.P394S	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.P394S	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	394					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TCGTAGGGTGGAGTGGCCTTC	0.537													26	84					0	0	0.009535	0	0
DNAH3	55567	broad.mit.edu	37	16	20994192	20994192	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:20994192C>T	uc010vbe.1	-	49	7710	c.7710G>A	c.(7708-7710)GGG>GGA	p.G2570G	DNAH3_uc010vbd.1_Silent_p.G5G	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2570	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGAAGGCATCCCCTATTGGAC	0.522													21	33					0	0	0.016522	0	0
DNAH3	55567	broad.mit.edu	37	16	20996554	20996554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:20996554C>T	uc010vbe.1	-	48	7510	c.7510G>A	c.(7510-7512)GAC>AAC	p.D2504N	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2504	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATGTTGATGTCCTCCACGAAT	0.517													17	29					0	0	0.006122	0	0
SULT1A1	6817	broad.mit.edu	37	16	28618277	28618277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:28618277C>T	uc002dqi.2	-	4	967	c.494G>A	c.(493-495)GGA>GAA	p.G165E	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.G165E|SULT1A1_uc002dqk.2_Missense_Mutation_p.G165E|SULT1A1_uc002dql.2_Missense_Mutation_p.G165E|SULT1A1_uc002dqm.2_Missense_Mutation_p.G87E|SULT1A1_uc002dqn.2_Missense_Mutation_p.G256E|SULT1A1_uc002dqo.2_Missense_Mutation_p.G165E|SULT1A1_uc002dqp.2_Missense_Mutation_p.G165E	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	165					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						CCCACCTTCTCCGACCATGAA	0.567													8	59					0	0	0.004482	0	0
NAE1	8883	broad.mit.edu	37	16	66839687	66839687	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:66839687G>A	uc002eqf.2	-	19	1565	c.1488C>T	c.(1486-1488)TTC>TTT	p.F496F	NAE1_uc002eqe.2_Silent_p.F490F|NAE1_uc002eqg.2_Silent_p.F407F|NAE1_uc010cdv.2_Silent_p.F499F	NM_003905	NP_003896	Q13564	ULA1_HUMAN	NEDD8 activating enzyme E1 subunit 1 isoform a	496					apoptosis|cell cycle|DNA replication|mitotic cell cycle DNA replication checkpoint|protein neddylation|signal transduction	cytoplasm|insoluble fraction|plasma membrane	catalytic activity|protein heterodimerization activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0914)|Epithelial(162;0.214)	Adenosine triphosphate(DB00171)	CACCCCCCAAGAATGCAGCAA	0.398													11	22					0	0	0.013537	0	0
PKD1L2	114780	broad.mit.edu	37	16	81167204	81167204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:81167204C>T	uc002fgh.1	-	35	5821	c.5821G>A	c.(5821-5823)GAA>AAA	p.E1941K	PKD1L2_uc002fgf.1_5'UTR|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1941	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCTTTCTGTTCCTTGAGGTGG	0.542													9	16					0	0	0.004482	0	0
CDH13	1012	broad.mit.edu	37	16	83712035	83712035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr16:83712035G>A	uc002fgx.2	+	10	1627	c.1507G>A	c.(1507-1509)GAC>AAC	p.D503N	CDH13_uc010vns.1_Missense_Mutation_p.D550N|CDH13_uc010vnt.1_Missense_Mutation_p.D249N|CDH13_uc010vnu.1_Missense_Mutation_p.D464N	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	503	Cadherin 4.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GAATGCCACGGACCCCGACTC	0.602													6	10					0	0	0.001168	0	0
NXN	64359	broad.mit.edu	37	17	704267	704267	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:704267C>T	uc002fsa.2	-	8	1322	c.1230G>A	c.(1228-1230)GTG>GTA	p.V410V	NXN_uc010vqd.1_Silent_p.V101V|NXN_uc002frz.2_Silent_p.V161V|NXN_uc010vqe.1_Silent_p.V302V	NM_022463	NP_071908	Q6DKJ4	NXN_HUMAN	nucleoredoxin	410					cell differentiation|cell redox homeostasis|multicellular organismal development|Wnt receptor signaling pathway	cytosol|nucleus	protein-disulfide reductase activity			ovary(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (25;0.0237)		TGATCTCCTCCACGTCCATCA	0.592													20	13					0	0	0.007413	0	0
MYH8	4626	broad.mit.edu	37	17	10312747	10312747	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:10312747C>T	uc002gmm.2	-	16	1841	c.1746G>A	c.(1744-1746)CTG>CTA	p.L582L	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	582	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CATAGTGAATCAGAGAGAAGT	0.517									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				48	38					0	0	0.014410	0	0
MYH4	4622	broad.mit.edu	37	17	10355546	10355546	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:10355546G>A	uc002gmn.2	-	27	3561	c.3450C>T	c.(3448-3450)ATC>ATT	p.I1150I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1150	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCCTCTCACTGATCTCCTCCA	0.612													65	73					0	0	0.014410	0	0
MAP2K3	5606	broad.mit.edu	37	17	21215555	21215556	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:21215555_21215556CC>TT	uc002gys.2	+	10	1141_1142	c.876_877CC>TT	c.(874-879)GACCGT>GATTGT	p.R293C	MAP2K3_uc002gyt.2_Missense_Mutation_p.R264C|MAP2K3_uc002gyu.2_Missense_Mutation_p.R264C	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	293	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		TCCCAGCCGACCGTTTCTCCCC	0.644													5	15					0	0	0.004672	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904193	21904193	+	RNA	SNP	C	G	G	rs9904221	by1000genomes	TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:21904193C>G	uc002gza.2	+	1		c.132C>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						cagcctcaggcctgccaggac	0													3	19					0	0	0.009096	0	0
UTP6	55813	broad.mit.edu	37	17	30207772	30207772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:30207772G>A	uc002hgr.2	-	11	870	c.787C>T	c.(787-789)CTT>TTT	p.L263F	UTP6_uc002hgq.2_Missense_Mutation_p.L79F|UTP6_uc010cst.2_Missense_Mutation_p.L112F|UTP6_uc010wbw.1_Missense_Mutation_p.L263F	NM_018428	NP_060898	Q9NYH9	UTP6_HUMAN	hepatocellular carcinoma-associated antigen 66	263					rRNA processing	nucleolus	binding			ovary(1)	1		all_hematologic(16;0.0149)|Ovarian(249;0.021)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|Breast(31;0.231)				AGAGCCTGAAGGCTGAAAAAT	0.403													8	53					0	0	0.004482	0	0
ACCN1	40	broad.mit.edu	37	17	31350947	31350947	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:31350947C>T	uc002hhu.2	-	6	1402	c.1128G>A	c.(1126-1128)GTG>GTA	p.V376V	ACCN1_uc002hht.2_Silent_p.V427V	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	376	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	TGGGGATCTTCACCATGGAGA	0.478													31	34					0	0	0.013726	0	0
UNC45B	146862	broad.mit.edu	37	17	33507649	33507649	+	Missense_Mutation	SNP	G	A	A	rs34242925	byFrequency	TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:33507649G>A	uc002hja.2	+	18	2430	c.2333G>A	c.(2332-2334)CGG>CAG	p.R778Q	UNC45B_uc002hjb.2_Missense_Mutation_p.R776Q|UNC45B_uc002hjc.2_Missense_Mutation_p.R776Q|UNC45B_uc010cto.2_Missense_Mutation_p.R697Q	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	778	ARM 3.				cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				GATCAGCTGCGGCAGGCGGCC	0.572													6	44					0	0	0.001168	0	0
CCR7	1236	broad.mit.edu	37	17	38712013	38712014	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:38712013_38712014CC>TT	uc002huw.2	-	3	180_181	c.117_118GG>AA	c.(115-120)GTGGAC>GTAAAC	p.D40N		NM_001838	NP_001829	P32248	CCR7_HUMAN	chemokine (C-C motif) receptor 7 precursor	40	Extracellular (Potential).				cell maturation|immunological synapse formation|inflammatory response|interleukin-12 secretion|lymphocyte migration into lymph node|positive regulation of dendritic cell antigen processing and presentation|positive regulation of glycoprotein biosynthetic process|positive regulation of humoral immune response|positive regulation of hypersensitivity|positive regulation of interleukin-12 production|positive regulation of neutrophil chemotaxis|regulation of interferon-gamma production|regulation of interleukin-1 beta secretion|T cell costimulation	integral to membrane|intracellular	C-C chemokine receptor activity|chemokine (C-C motif) ligand 19 binding|chemokine (C-C motif) ligand 21 binding			breast(1)	1		Breast(137;0.000496)				AAAGTGTAGTCCACTGTGGTGT	0.495													5	51					0	0	0.004672	0	0
BZRAP1	9256	broad.mit.edu	37	17	56382809	56382810	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:56382809_56382810GG>AA	uc002ivx.3	-	29	6242_6243	c.5371_5372CC>TT	c.(5371-5373)CCC>TTC	p.P1791F	BZRAP1_uc002ivv.2_5'Flank|BZRAP1_uc002ivw.2_Missense_Mutation_p.P23F|BZRAP1_uc010dcs.2_Missense_Mutation_p.P1731F|BZRAP1_uc010wnt.1_Missense_Mutation_p.P1782F	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1791	SH3 3.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGCCCGGAAGGGCAGCTCTGCC	0.579													34	29					0	0	0.004672	0	0
MARCH10	162333	broad.mit.edu	37	17	60802403	60802403	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:60802403C>A	uc010ddr.2	-	7	2238	c.2000G>T	c.(1999-2001)GGT>GTT	p.G667V	MARCH10_uc002jag.3_Missense_Mutation_p.G667V|MARCH10_uc010dds.2_Missense_Mutation_p.G705V|MARCH10_uc002jah.2_Missense_Mutation_p.G666V|uc002jaj.1_Intron|uc002jak.2_Intron	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	667	RING-CH-type.						ligase activity|zinc ion binding				0						GCTTGGGGAACCCCCGGCTAT	0.542													20	27					2.89027e-11	5.82115e-11	0.014323	1	0
GH2	2689	broad.mit.edu	37	17	61958457	61958457	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:61958457G>A	uc002jco.1	-	3	285	c.223C>T	c.(223-225)CAG>TAG	p.Q75*	GH2_uc002jcj.2_Nonsense_Mutation_p.Q75*|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Nonsense_Mutation_p.Q75*|GH2_uc002jcm.1_Nonsense_Mutation_p.Q75*|GH2_uc002jcn.1_Nonsense_Mutation_p.Q60*	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	75						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						AGGGAGGTCTGGGGGTTCTGC	0.532													13	170					0	0	0.003163	0	0
DSG2	1829	broad.mit.edu	37	18	29101112	29101112	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr18:29101112A>C	uc002kwu.3	+	5	617	c.429A>C	c.(427-429)TTA>TTC	p.L143F		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	143	Extracellular (Potential).|Cadherin 1.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			AGAAACCCTTAGAGCTACGCA	0.378													6	38					0	0	0.001168	0	0
C18orf34	374864	broad.mit.edu	37	18	30969504	30969504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr18:30969504C>T	uc002kxn.2	-	4	350	c.208G>A	c.(208-210)GGG>AGG	p.G70R	C18orf34_uc010xbr.1_Missense_Mutation_p.G70R|C18orf34_uc010dmf.1_Missense_Mutation_p.G70R|C18orf34_uc002kxo.2_Missense_Mutation_p.G70R|C18orf34_uc002kxp.2_Missense_Mutation_p.G70R	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	70										ovary(1)	1						CAGTCCTCACCTTCAGTATTT	0.284													5	46					0	0	0.014758	0	0
SETBP1	26040	broad.mit.edu	37	18	42530081	42530081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr18:42530081C>T	uc010dni.2	+	4	1072	c.776C>T	c.(775-777)TCC>TTC	p.S259F		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	259						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CCCGTGGCTTCCTTTGCAAAG	0.537									Schinzel-Giedion_syndrome				14	51					0	0	0.003163	0	0
DCC	1630	broad.mit.edu	37	18	50705432	50705432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr18:50705432G>A	uc002lfe.1	+	9	2106	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	DCC_uc010xdr.1_Missense_Mutation_p.E355K|DCC_uc010dpf.1_Missense_Mutation_p.E162K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	507	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GGCTTACAATGAATGGGGACC	0.483													10	25					0	0	0.006214	0	0
RAB27B	5874	broad.mit.edu	37	18	52551645	52551645	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr18:52551645C>T	uc002lfr.2	+	4	432	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	107					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		AACAGAGCTTCTTAAATGTCA	0.468													25	54					0	0	0.006320	0	0
ALPK2	115701	broad.mit.edu	37	18	56202246	56202246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr18:56202246C>T	uc002lhj.3	-	5	5387	c.5173G>A	c.(5173-5175)GAG>AAG	p.E1725K	ALPK2_uc002lhk.1_Missense_Mutation_p.E1056K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1725							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TTTACTCCCTCAGCTAAATGT	0.502													11	32					0	0	0.008291	0	0
ALPK2	115701	broad.mit.edu	37	18	56203078	56203078	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr18:56203078G>A	uc002lhj.3	-	5	4555	c.4341C>T	c.(4339-4341)ATC>ATT	p.I1447I	ALPK2_uc002lhk.1_Silent_p.I778I	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1447							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGGCCGGCTGGATTTCCGCTT	0.527													24	41					0	0	0.004656	0	0
CCDC102B	79839	broad.mit.edu	37	18	66721290	66721290	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr18:66721290C>T	uc002lkk.2	+	10	1681	c.1458C>T	c.(1456-1458)ATC>ATT	p.I486I	CCDC102B_uc002lki.2_Silent_p.I486I	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	486	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				TGAATCAGATCCGTAAGCTCC	0.284													15	47					0	0	0.004007	0	0
LRRC8E	80131	broad.mit.edu	37	19	7964105	7964105	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:7964105C>A	uc002mir.2	+	3	799	c.698C>A	c.(697-699)GCC>GAC	p.A233D		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	233						integral to membrane				lung(1)|pancreas(1)	2						CAAGCCAAAGCCCTGTTTGAG	0.547													8	26					0.000157383	0.0003155	0.003080	1	0
MUC16	94025	broad.mit.edu	37	19	9000207	9000207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:9000207G>A	uc002mkp.2	-	55	40754	c.40550C>T	c.(40549-40551)CCT>CTT	p.P13517L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.P334L|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13519	SEA 10.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTGAACACAGGCCTGAGCTG	0.577													10	24					0	0	0.013537	0	0
MUC16	94025	broad.mit.edu	37	19	9048855	9048855	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:9048855C>G	uc002mkp.2	-	5	32980	c.32776G>C	c.(32776-32778)GTT>CTT	p.V10926L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10928	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAGGTGAAACAGTTGGAGTT	0.478													7	62					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9056855	9056855	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:9056855C>T	uc002mkp.2	-	3	30795	c.30591G>A	c.(30589-30591)CAG>CAA	p.Q10197Q		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10199	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTTGGAACTCTGTAAAAGGT	0.463													15	36					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9060891	9060891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:9060891G>A	uc002mkp.2	-	3	26759	c.26555C>T	c.(26554-26556)CCT>CTT	p.P8852L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8854	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAAGATGGAGGGCTAGTTTT	0.522													26	54					0	0	0.006320	0	0
MUC16	94025	broad.mit.edu	37	19	9067222	9067222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:9067222G>A	uc002mkp.2	-	3	20428	c.20224C>T	c.(20224-20226)CCT>TCT	p.P6742S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6744	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGCCAAGAGGAGGACCTGTT	0.502													26	144					0	0	0.006320	0	0
MUC16	94025	broad.mit.edu	37	19	9085534	9085534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:9085534G>A	uc002mkp.2	-	1	6485	c.6281C>T	c.(6280-6282)TCA>TTA	p.S2094L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2094	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGATGCAGCTGAAAAGAGTGG	0.473													21	109					0	0	0.012319	0	0
ZNF560	147741	broad.mit.edu	37	19	9578502	9578502	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:9578502T>C	uc002mlp.1	-	10	1331	c.1121A>G	c.(1120-1122)AAA>AGA	p.K374R	ZNF560_uc010dwr.1_Missense_Mutation_p.K268R	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	374					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TTTATAAGGTTTTATCCCAAT	0.403													14	46					0	0	0.004990	0	0
ZNF562	54811	broad.mit.edu	37	19	9764378	9764378	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:9764378G>A	uc010xks.1	-	6	691	c.528C>T	c.(526-528)TCC>TCT	p.S176S	ZNF562_uc002mly.2_Silent_p.S176S|ZNF562_uc002mlx.2_Silent_p.S104S|ZNF562_uc010xkt.1_Silent_p.S139S|ZNF562_uc010xku.1_Silent_p.S107S|ZNF562_uc010xkv.1_Silent_p.S175S|ZNF562_uc010xkw.1_Silent_p.S60S	NM_001130032	NP_001123504	Q6V9R5	ZN562_HUMAN	zinc finger protein 562 isoform a	176	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GATTAAATTTGGAAAGTTCTT	0.413													5	57					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	19	9801452	9801452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:9801452G>A	uc010xkx.1	-	3	1038	c.415C>T	c.(415-417)CAT>TAT	p.H139Y						RecName: Full=Zinc finger protein 562;																		TCTCCTTTATGAATTTTCACA	0.333													8	23					0	0	0.006214	0	0
RAVER1	125950	broad.mit.edu	37	19	10432267	10432267	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:10432267G>A	uc002moa.2	-	7	1332	c.1252C>T	c.(1252-1254)CTG>TTG	p.L418L		NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	401						cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			AGGGCGCCCAGGGGTGAGTCT	0.682													9	28					0	0	0.008291	0	0
ZNF136	7695	broad.mit.edu	37	19	12298662	12298662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:12298662C>T	uc002mti.2	+	4	1569	c.1469C>T	c.(1468-1470)TCC>TTC	p.S490F	ZNF136_uc010xmh.1_Missense_Mutation_p.S424F	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	490	C2H2-type 13.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						TCTTCTAGTTCCTTTCGACTA	0.428													14	32					0	0	0.020292	0	0
NFIX	4784	broad.mit.edu	37	19	13184817	13184817	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:13184817C>T	uc010xmx.1	+	5	872	c.819C>T	c.(817-819)TCC>TCT	p.S273S	NFIX_uc002mwd.2_Silent_p.S265S|NFIX_uc002mwe.2_Silent_p.S257S|NFIX_uc002mwf.2_Silent_p.S268S|NFIX_uc002mwg.1_Silent_p.S264S			Q14938	NFIX_HUMAN	RecName: Full=Nuclear factor 1;	265					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(19;8.2e-22)			GGCGGCGGTCCATCACCTCCC	0.627													22	54					0	0	0.018920	0	0
CACNA1A	773	broad.mit.edu	37	19	13418658	13418658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:13418658C>T	uc010dze.2	-	15	2163	c.1927G>A	c.(1927-1929)GAT>AAT	p.D643N	CACNA1A_uc010dzc.2_Missense_Mutation_p.D168N|CACNA1A_uc002mwy.3_Missense_Mutation_p.D642N|CACNA1A_uc010xne.1_Missense_Mutation_p.D168N	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	643	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GTCCCTTCATCGAAATTAAAC	0.547													19	63					0	0	0.012319	0	0
RASAL3	64926	broad.mit.edu	37	19	15564263	15564263	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:15564263G>A	uc002nbe.2	-	15	2411	c.2325C>T	c.(2323-2325)CTC>CTT	p.L775L	RASAL3_uc002nbd.2_Silent_p.L115L|RASAL3_uc010eaa.1_Silent_p.L263L	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	775					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						TGTGCTTGGGGAGGTCCCGGG	0.687													5	8					0	0	0.014758	0	0
CYP4F2	8529	broad.mit.edu	37	19	15989716	15989716	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:15989716C>T	uc002nbs.1	-	13	1478	c.1428G>A	c.(1426-1428)GCG>GCA	p.A476A	CYP4F2_uc010xot.1_Silent_p.A327A	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	476					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						CCTTCATCTCCGCCATCGCGA	0.672													6	22					0	0	0.001984	0	0
OCEL1	79629	broad.mit.edu	37	19	17338717	17338717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:17338717G>A	uc002nfp.2	+	4	523	c.521G>A	c.(520-522)GGA>GAA	p.G174E		NM_024578	NP_078854	Q9H607	OCEL1_HUMAN	occludin/ELL domain containing 1	174										central_nervous_system(1)	1						GACCAGTACGGAGAGTTCTTG	0.612													20	42					0	0	0.012319	0	0
ZNF208	7757	broad.mit.edu	37	19	22157610	22157610	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:22157610C>T	uc002nqp.2	-	4	376	c.227_splice	c.e4-1	p.V76_splice	ZNF208_uc002nqo.1_Splice_Site_p.V76_splice|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GAACATATAACTGAAAAGAAA	0.299													7	9					0	0	0.003080	0	0
ZNF98	148198	broad.mit.edu	37	19	22605023	22605023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:22605023G>A	uc002nqt.2	-	1	126	c.4C>T	c.(4-6)CCA>TCA	p.P2S		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	2					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				AGGGGTCCTGGCATCTTAGCT	0.597													11	60					0	0	0.003163	0	0
WDR88	126248	broad.mit.edu	37	19	33623137	33623137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:33623137C>T	uc002nui.2	+	1	140	c.62C>T	c.(61-63)CCC>CTC	p.P21L		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	21										ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					TTGCCGCCACCCTCCGCCCCC	0.701													6	30					0	0	0.001984	0	0
NFKBID	84807	broad.mit.edu	37	19	36387124	36387124	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:36387124G>A	uc002oci.1	-	8	1027	c.453C>T	c.(451-453)TTC>TTT	p.F151F	NFKBID_uc002och.1_5'UTR|NFKBID_uc002ocj.1_Silent_p.F166F	NM_139239	NP_640332	Q8NI38	IKBD_HUMAN	nuclear factor of kappa light polypeptide gene	151					inflammatory response	nucleus					0						ACTTACCCTCGAAGTCTCTGG	0.617													21	48					0	0	0.016522	0	0
RYR1	6261	broad.mit.edu	37	19	38991538	38991538	+	Missense_Mutation	SNP	C	T	T	rs118192178		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:38991538C>T	uc002oit.2	+	47	7652	c.7522C>T	c.(7522-7524)CGT>TGT	p.R2508C	RYR1_uc002oiu.2_Missense_Mutation_p.R2508C|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2508	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTTCCTGGACCGTGTGTATGG	0.622													12	16					0	0	0.013537	0	0
CYP2A6	1548	broad.mit.edu	37	19	41350574	41350574	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:41350574T>C	uc002opl.3	-	8	1286	c.1265A>G	c.(1264-1266)CAG>CGG	p.Q422R		NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	422					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	CTTCTTAAACTGCCCCTTCTC	0.557													27	89					0	0	0.004656	0	0
CCDC97	90324	broad.mit.edu	37	19	41825596	41825596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:41825596C>T	uc002oqg.2	+	3	742	c.620C>T	c.(619-621)CCC>CTC	p.P207L	CYP2F1_uc010xvw.1_Intron	NM_052848	NP_443080	Q96F63	CCD97_HUMAN	coiled-coil domain containing 97	207											0						ACCCACCAGCCCCCCAAGCCC	0.647													7	38					0	0	0.003080	0	0
PSG7	5676	broad.mit.edu	37	19	43441196	43441196	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:43441196C>T	uc002ovl.3	-	1	135	c.33G>A	c.(31-33)CAG>CAA	p.Q11Q	PSG3_uc002ouf.2_5'Flank|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Silent_p.Q11Q	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	11					female pregnancy	extracellular region					0		Prostate(69;0.00682)				AGGTTATATGCTGTGTGCAGG	0.572													27	47					0	0	0.013726	0	0
CADM4	199731	broad.mit.edu	37	19	44130962	44130962	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:44130962C>T	uc002oxc.1	-	4	522	c.473G>A	c.(472-474)TGG>TAG	p.W158*		NM_145296	NP_660339	Q8NFZ8	CADM4_HUMAN	cell adhesion molecule 4 precursor	158	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	integral to membrane					0		Prostate(69;0.0199)				GTCCCGGTACCAGCGCAGGGT	0.647													26	59					0	0	0.005443	0	0
GPR77	27202	broad.mit.edu	37	19	47844445	47844445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:47844445C>T	uc010ela.1	+	2	607	c.389C>T	c.(388-390)GCC>GTC	p.A130V	GPR77_uc002pgk.1_Missense_Mutation_p.A130V	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	130	Helical; Name=3; (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity			ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		GCTCTCAGTGCCGACCTCTGC	0.677													24	58					0	0	0.021523	0	0
KPTN	11133	broad.mit.edu	37	19	47986621	47986621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:47986621C>T	uc002pgy.2	-	3	429	c.325G>A	c.(325-327)GGC>AGC	p.G109S	KPTN_uc010xys.1_RNA|uc002pgz.1_5'Flank	NM_007059	NP_008990	Q9Y664	KPTN_HUMAN	kaptin (actin binding protein)	109					actin filament organization|cellular component movement|sensory perception of sound	actin cytoskeleton|growth cone|microtubule organizing center|nucleus|perinuclear region of cytoplasm|stereocilium	actin binding			ovary(1)	1		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000428)|all cancers(93;0.000631)|Epithelial(262;0.0153)|GBM - Glioblastoma multiforme(486;0.0694)		AAGGGGCTGCCCTTGTCCCCT	0.622											OREG0025593	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	52					0	0	0.003080	0	0
ZNF160	90338	broad.mit.edu	37	19	53571608	53571608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:53571608G>A	uc010eqk.2	-	7	2595	c.2179C>T	c.(2179-2181)CAT>TAT	p.H727Y	ZNF160_uc002qaq.3_Missense_Mutation_p.H727Y|ZNF160_uc002qar.3_Missense_Mutation_p.H727Y	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	727	C2H2-type 17.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		TTCCCAGTATGGATTGCCTGA	0.443													14	55					0	0	0.004007	0	0
MIR520F	574464	broad.mit.edu	37	19	54185498	54185498	+	RNA	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:54185498G>A	hsa-mir-520f|MI0003146	+			c.86G>A			uc010yea.1_5'Flank|MIR515-2_hsa-mir-515-2|MI0003147_5'Flank																	0						TACCGTTTGGGAAAAGCAATG	0.428													12	22					0	0	0.013537	0	0
VSTM1	284415	broad.mit.edu	37	19	54545422	54545422	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:54545422C>T	uc002qcw.3	-	6	691	c.515_splice	c.e6+1	p.R172_splice	VSTM1_uc010erb.2_Intron|VSTM1_uc002qcx.3_Splice_Site_p.R141_splice	NM_198481	NP_940883	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1							integral to membrane					0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)		CAAGCATCTACCTCTTGGTGG	0.512													22	68					0	0	0.004656	0	0
NLRP8	126205	broad.mit.edu	37	19	56466505	56466505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:56466505G>A	uc002qmh.2	+	3	1152	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	NLRP8_uc010etg.2_Missense_Mutation_p.E361K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	361	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TAATACGATGGAAAAAATCAA	0.463													18	43					0	0	0.008871	0	0
C19orf18	147685	broad.mit.edu	37	19	58485503	58485503	+	Silent	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:58485503A>G	uc002qqv.2	-	2	294	c.190T>C	c.(190-192)TTG>CTG	p.L64L		NM_152474	NP_689687	Q8NEA5	CS018_HUMAN	hypothetical protein LOC147685 precursor	64	Extracellular (Potential).					integral to membrane				ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)		ATCCCAGGCAACTGGGTTTTA	0.468													18	49					0	0	0.010504	0	0
ZNF274	10782	broad.mit.edu	37	19	58718259	58718259	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:58718259C>T	uc002qrq.1	+	5	888	c.429C>T	c.(427-429)CCC>CCT	p.P143P	ZNF274_uc010yhu.1_RNA|ZNF274_uc010yhv.1_RNA|ZNF274_uc002qrr.1_Silent_p.P111P|ZNF274_uc002qrs.1_Silent_p.P38P|ZNF274_uc010eum.1_5'UTR	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	143					viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		CAGATGCCCCCAGTGAGCAGG	0.607													4	10					0	0	0.009096	0	0
SPDYA	245711	broad.mit.edu	37	2	29072765	29072765	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:29072765G>A	uc002rmj.2	+	8	1106	c.900G>A	c.(898-900)AAG>AAA	p.K300K	SPDYA_uc002rmk.2_Silent_p.K300K|TRMT61B_uc002rmm.2_3'UTR|TRMT61B_uc002rmn.2_3'UTR|TRMT61B_uc010ezk.2_RNA	NM_182756	NP_877433	Q5MJ70	SPDYA_HUMAN	speedy homolog A isoform 1	300					G1/S transition of mitotic cell cycle|multicellular organismal development|positive regulation of cell proliferation|response to DNA damage stimulus	nucleus	protein kinase binding			upper_aerodigestive_tract(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					ATTTCTTGAAGAAAGACAAAT	0.294													5	24					0	0	0.001984	0	0
UGP2	7360	broad.mit.edu	37	2	64118256	64118256	+	Silent	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:64118256A>G	uc002scm.2	+	10	1728	c.1422A>G	c.(1420-1422)GGA>GGG	p.G474G	UGP2_uc002scl.2_Silent_p.G463G|UGP2_uc010ypx.1_Silent_p.G483G	NM_006759	NP_006750	Q16851	UGPA_HUMAN	UDP-glucose pyrophosphorylase 2 isoform a	474	Oligomerization (By similarity).				glycogen biosynthetic process|phosphorylation|UDP-glucose metabolic process|UDP-glucuronate biosynthetic process|xenobiotic metabolic process	cytosol	metal ion binding|protein binding|UTP:glucose-1-phosphate uridylyltransferase activity				0						TCACTTAGGGAACGGTTATCA	0.368													8	27					0	0	0.003080	0	0
RGPD3	653489	broad.mit.edu	37	2	107049684	107049684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:107049684C>T	uc010ywi.1	-	16	2320	c.2263G>A	c.(2263-2265)GAA>AAA	p.E755K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	755					intracellular transport		binding			ovary(1)	1						CTATAGTTTTCGAGTTCCTGC	0.368													31	220					0	0	0.017118	0	0
RGPD4	285190	broad.mit.edu	37	2	108488640	108488640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:108488640C>T	uc010ywk.1	+	20	4262	c.4180C>T	c.(4180-4182)CGT>TGT	p.R1394C	RGPD4_uc002tdu.2_Missense_Mutation_p.R581C|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1394	RanBD1 2.				intracellular transport		binding			skin(2)	2						TAAGCAAGTTCGTATAGTGAT	0.358													33	141					0	0	0.006999	0	0
IL1F9	56300	broad.mit.edu	37	2	113737642	113737642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:113737642G>A	uc002tio.1	+	4	286	c.217G>A	c.(217-219)GAT>AAT	p.D73N	IL1F9_uc010fkr.1_Missense_Mutation_p.D38N	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	73					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						AGGCAGAGGGGATCCCATTTA	0.418													4	27					0	0	0.009096	0	0
IL1F5	26525	broad.mit.edu	37	2	113820076	113820076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:113820076G>A	uc002tis.2	+	5	423	c.290G>A	c.(289-291)AGC>AAC	p.S97N	IL1F5_uc002tit.2_Missense_Mutation_p.S97N	NM_173170	NP_775262	Q9UBH0	I36RA_HUMAN	interleukin 1 family, member 5	97						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						GAATCCAAGAGCTTCACCTTC	0.627													11	19					0	0	0.013537	0	0
PAX8	7849	broad.mit.edu	37	2	113999231	113999231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:113999231G>A	uc010yxt.1	-	7	840	c.674C>T	c.(673-675)ACG>ATG	p.T225M	PAX8_uc010yxu.1_Missense_Mutation_p.T225M|PAX8_uc010yxv.1_Missense_Mutation_p.T225M|PAX8_uc002tjm.2_Missense_Mutation_p.T225M|PAX8_uc002tjn.2_Missense_Mutation_p.T225M|PAX8_uc010fku.1_Missense_Mutation_p.T225M|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	225					branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						GAAGGCATCCGTGCGAAGGTG	0.617			T	PPARG	follicular thyroid		Thyroid dysgenesis 						8	30					0	0	0.003080	0	0
PCDP1	200373	broad.mit.edu	37	2	120373205	120373205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:120373205C>T	uc002tmb.2	+	15	1564	c.472C>T	c.(472-474)CCT>TCT	p.P158S	PCDP1_uc010yyq.1_Missense_Mutation_p.P288S	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	444						cilium	calmodulin binding				0	Colorectal(110;0.196)					GGAATTTCATCCTACTTTTGA	0.353													4	9					0	0	0.009096	0	0
TFCP2L1	29842	broad.mit.edu	37	2	121995289	121995290	+	Silent	DNP	GG	AA	AA			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:121995289_121995290GG>AA	uc002tmx.2	-	10	1005_1006	c.912_913CC>TT	c.(910-915)CACCTG>CATTTG	p.304_305HL>HL	TFCP2L1_uc010flr.2_Silent_p.304_305HL>HL	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	304_305					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					GATGGGAGCAGGTGCTGTGAGC	0.609													8	23					0	0	0.004672	0	0
GALNT3	2591	broad.mit.edu	37	2	166616016	166616016	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:166616016G>A	uc010fph.1	-	5	1290	c.903C>T	c.(901-903)GTC>GTT	p.V301V	GALNT3_uc010fpi.1_Silent_p.V301V	NM_004482	NP_004473	Q14435	GALT3_HUMAN	polypeptide N-acetylgalactosaminyltransferase 3	301	Lumenal (Potential).				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	Golgi cisterna membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	calcium ion binding|manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(2)|ovary(1)	3						CTGGACTTACGACAGCCGTGT	0.398													11	24					0	0	0.013537	0	0
XIRP2	129446	broad.mit.edu	37	2	168101641	168101641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:168101641C>T	uc002udx.2	+	8	3757	c.3739C>T	c.(3739-3741)CCA>TCA	p.P1247S	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P1072S|XIRP2_uc010fpq.2_Missense_Mutation_p.P1025S|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1072	Xin 20.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGAAAACCAACCAATTGATAA	0.343													8	22					0	0	0.003080	0	0
CIR1	9541	broad.mit.edu	37	2	175260318	175260318	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:175260318C>T	uc002uim.2	-	1	126	c.33G>A	c.(31-33)AAG>AAA	p.K11K	CIR1_uc002uin.2_5'UTR|CIR1_uc002uio.2_5'UTR|CIR1_uc002uip.2_5'UTR|SCRN3_uc002uiq.2_5'Flank|SCRN3_uc010zen.1_5'Flank|SCRN3_uc010zeo.1_5'Flank|SCRN3_uc002uir.1_5'Flank	NM_004882	NP_004873	Q86X95	CIR1_HUMAN	CBF1 interacting corepressor	11	Interaction with RBPJ.				mRNA processing|negative regulation of transcription, DNA-dependent|RNA splicing	nuclear speck	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			large_intestine(1)	1						GAAAGTCTTTCTTGCACATGA	0.502													19	108					0	0	0.018920	0	0
TTN	7273	broad.mit.edu	37	2	179542556	179542556	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:179542556C>T	uc010zfg.1	-	143	30575	c.30351G>A	c.(30349-30351)GAG>GAA	p.E10117E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.E6778E|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11044							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGAACTTCCTCTTCAGGAA	0.428													20	66					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179577224	179577224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:179577224G>A	uc010zfg.1	-	92	23917	c.23693C>T	c.(23692-23694)TCG>TTG	p.S7898L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S4559L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8825							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGGTAACCGAAATGGGAGG	0.423													4	12					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179640923	179640923	+	Missense_Mutation	SNP	G	A	A	rs146496197	byFrequency	TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:179640923G>A	uc010zfg.1	-	28	5892	c.5668C>T	c.(5668-5670)CGC>TGC	p.R1890C	TTN_uc010zfh.1_Missense_Mutation_p.R1844C|TTN_uc010zfi.1_Missense_Mutation_p.R1844C|TTN_uc010zfj.1_Missense_Mutation_p.R1844C|TTN_uc002unb.2_Missense_Mutation_p.R1890C|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1890							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATCATAGCGAACTCTGAAC	0.498													21	104					0	0	0.012319	0	0
TTN	7273	broad.mit.edu	37	2	179642222	179642222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:179642222C>T	uc010zfg.1	-	26	4794	c.4570G>A	c.(4570-4572)GAT>AAT	p.D1524N	TTN_uc010zfh.1_Missense_Mutation_p.D1478N|TTN_uc010zfi.1_Missense_Mutation_p.D1478N|TTN_uc010zfj.1_Missense_Mutation_p.D1478N|TTN_uc002unb.2_Missense_Mutation_p.D1524N|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1524							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCCCAGAATCACTGGGTGTG	0.378													5	13					0	0	0.014758	0	0
ZNF385B	151126	broad.mit.edu	37	2	180409647	180409647	+	Silent	SNP	G	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:180409647G>T	uc002unn.3	-	4	907	c.303C>A	c.(301-303)ACC>ACA	p.T101T	ZNF385B_uc002unj.2_5'UTR|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_5'UTR|ZNF385B_uc002unm.2_Silent_p.T25T	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	101						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			GCATCATCAGGGTAGGTGTGC	0.433													21	68					1.00905e-13	2.03704e-13	0.008871	1	0
ITGA4	3676	broad.mit.edu	37	2	182396441	182396441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:182396441G>A	uc002unu.2	+	25	3485	c.2722G>A	c.(2722-2724)GAA>AAA	p.E908K	ITGA4_uc002unv.2_Missense_Mutation_p.E153K	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	908	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TGGGAAAATGGAAAGTGGAAA	0.348													8	61					0	0	0.004482	0	0
NEUROD1	4760	broad.mit.edu	37	2	182542991	182542991	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:182542991C>T	uc002uof.2	-	2	833	c.597G>A	c.(595-597)CAG>CAA	p.Q199Q	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	199					amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TGTCCTGGTTCTGCTCAGGCA	0.612											OREG0005603	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=NEUROD1|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	40	172					0	0	0.011902	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202469393	202469393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:202469393C>T	uc002uye.2	-	2	307	c.259G>A	c.(259-261)GAT>AAT	p.D87N	ALS2CR11_uc002uyf.2_Missense_Mutation_p.D87N|ALS2CR11_uc010fti.2_Missense_Mutation_p.D87N	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	87										large_intestine(1)|ovary(1)|skin(1)	3						TCTTCACTATCAGACTCTTTA	0.313													13	66					0	0	0.020292	0	0
IDH1	3417	broad.mit.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	A	A	rs121913499		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:209113113G>A	uc002vcs.2	-	4	640	c.394C>T	c.(394-396)CGT>TGT	p.R132C	IDH1_uc002vct.2_Missense_Mutation_p.R132C|IDH1_uc002vcu.2_Missense_Mutation_p.R132C	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TAAGCATGACGACCTATGATG	0.398			Mis		gliobastoma 								7	45					0	0	0.006214	0	0
PTH2R	5746	broad.mit.edu	37	2	209302514	209302514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:209302514G>A	uc002vdb.2	+	4	532	c.319G>A	c.(319-321)GGA>AGA	p.G107R	PTH2R_uc010zjb.1_Missense_Mutation_p.G118R	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	107	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TAACCCCAATGGAACATGGGA	0.408													5	27					0	0	0.014758	0	0
C2orf67	151050	broad.mit.edu	37	2	210888825	210888825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:210888825G>A	uc002vds.2	-	14	2873	c.2665C>T	c.(2665-2667)CTT>TTT	p.L889F	C2orf67_uc002vdt.2_Missense_Mutation_p.L847F	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	889										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		TCTGAAGGAAGCCCAGGAGGA	0.398													10	18					0	0	0.006214	0	0
ERBB4	2066	broad.mit.edu	37	2	212587181	212587181	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:212587181G>A	uc002veg.1	-	7	918	c.820C>T	c.(820-822)CAA>TAA	p.Q274*	ERBB4_uc002veh.1_Nonsense_Mutation_p.Q274*|ERBB4_uc010zji.1_Nonsense_Mutation_p.Q274*|ERBB4_uc010zjj.1_Nonsense_Mutation_p.Q274*|ERBB4_uc010fut.1_Nonsense_Mutation_p.Q274*	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	274	Cys-rich.|Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TGCTCCAGTTGAAAGGTGGTT	0.388										TSP Lung(8;0.080)			8	18					0	0	0.004482	0	0
RQCD1	9125	broad.mit.edu	37	2	219449406	219449406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:219449406C>T	uc010zkh.1	+	4	392	c.392C>T	c.(391-393)CCC>CTC	p.P131L	RQCD1_uc002vih.1_Missense_Mutation_p.P131L|RQCD1_uc010zki.1_Missense_Mutation_p.P131L	NM_005444	NP_005435	Q92600	RCD1_HUMAN	RCD1 required for cell differentiation1 homolog	131					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|sex differentiation|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(1)|skin(1)	2		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000192)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AAAACACGTCCCTTTGAGTAT	0.423													18	119					0	0	0.012319	0	0
FAM134A	79137	broad.mit.edu	37	2	220047114	220047114	+	Silent	SNP	C	T	T	rs139810951		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:220047114C>T	uc002vjw.3	+	9	1531	c.1395C>T	c.(1393-1395)TCC>TCT	p.S465S	FAM134A_uc010fwc.2_Silent_p.S258S|FAM134A_uc002vjx.2_Intron	NM_024293	NP_077269	Q8NC44	F134A_HUMAN	hypothetical protein LOC79137	465						endoplasmic reticulum|integral to membrane				ovary(1)|central_nervous_system(1)	2		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTCCCCTTCCATTCTCCCAC	0.627													12	50					0	0	0.003163	0	0
PID1	55022	broad.mit.edu	37	2	229890460	229890460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:229890460G>A	uc002vpr.3	-	3	679	c.641C>T	c.(640-642)GCC>GTC	p.A214V	PID1_uc002vps.3_Missense_Mutation_p.A212V|PID1_uc002vpt.3_Missense_Mutation_p.A181V|PID1_uc002vpu.3_Missense_Mutation_p.A132V	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	214	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		CTCCATCATGGCGTGGGCCAG	0.572													11	37					0	0	0.008291	0	0
NGEF	25791	broad.mit.edu	37	2	233785179	233785179	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:233785179G>C	uc002vts.2	-	5	891	c.643C>G	c.(643-645)CCG>GCG	p.P215A	NGEF_uc010fyg.1_Missense_Mutation_p.P123A|NGEF_uc002vtt.2_Missense_Mutation_p.P123A	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	215	Regulatory region; modulates activity toward RHOA, RAC1 and CDC42 (By similarity).				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		tcctcctccGGGGTGTCCTCA	0.458													3	53					0	0	0.009096	0	0
C20orf46	55321	broad.mit.edu	37	20	1162129	1162129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:1162129C>T	uc010gaa.1	-	3	353	c.134G>A	c.(133-135)AGA>AAA	p.R45K	C20orf46_uc002weq.1_Missense_Mutation_p.R45K	NM_018354	NP_060824	Q9NUR3	CT046_HUMAN	hypothetical protein LOC55321	45						integral to membrane	protein binding			ovary(1)	1						GGGAGCTGATCTCCTTGGGGC	0.617													13	25					0	0	0.020292	0	0
SIRPB1	10326	broad.mit.edu	37	20	1600559	1600559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:1600559G>A	uc010gai.2	-	1	131	c.32C>T	c.(31-33)CCT>CTT	p.P11L	SIRPB1_uc002wfk.3_Missense_Mutation_p.P11L|SIRPB1_uc002wfl.3_Missense_Mutation_p.P11L	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	11					cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GAAAGGACTAGGAAGGTGGGG	0.572													5	30					0	0	0.003080	0	0
PLK1S1	55857	broad.mit.edu	37	20	21142942	21142942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:21142942G>A	uc002wsb.2	+	5	969	c.836G>A	c.(835-837)CGG>CAG	p.R279Q	PLK1S1_uc010zsh.1_Missense_Mutation_p.R176Q|PLK1S1_uc010zsi.1_Missense_Mutation_p.R146Q|PLK1S1_uc010zsj.1_RNA|uc002wsc.2_Intron|PLK1S1_uc002wsd.2_RNA	NM_018474	NP_060944	Q2M2Z5	KIZ_HUMAN	polo-like kinase 1 substrate 1 isoform 1	279					spindle organization	centrosome	protein kinase binding				0						TCCCCGTTACGGGAAAGATTA	0.428													21	77					0	0	0.021523	0	0
CD93	22918	broad.mit.edu	37	20	23065357	23065358	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:23065357_23065358CC>TT	uc002wsv.2	-	1	1620_1621	c.1472_1473GG>AA	c.(1471-1473)GGG>GAA	p.G491E		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	491	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GCACGGTGCTCCCTTCTTTCTC	0.634													9	45					0	0	0.004672	0	0
C20orf186	149954	broad.mit.edu	37	20	31671662	31671662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:31671662C>T	uc010zue.1	+	3	674	c.659C>T	c.(658-660)ACT>ATT	p.T220I		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	220	Gly-rich.					cytoplasm|extracellular region	lipid binding				0						ATCCTCAGCACTGTGCAAGGC	0.637													14	34					0	0	0.004990	0	0
GDF5	8200	broad.mit.edu	37	20	34022112	34022112	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:34022112C>T	uc010gfc.1	-	2	1342	c.1101G>A	c.(1099-1101)AAG>AAA	p.K367K	uc002xcj.2_Missense_Mutation_p.L175F|GDF5_uc002xck.1_Silent_p.K367K|GDF5_uc010zvc.1_Silent_p.K367K	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	367					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CATACACGGTCTTATCGTCCT	0.597													23	100					0	0	0.007291	0	0
PPP1R16B	26051	broad.mit.edu	37	20	37546929	37546929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:37546929G>A	uc002xje.2	+	11	1513	c.1324G>A	c.(1324-1326)GGG>AGG	p.G442R	PPP1R16B_uc010ggc.2_Missense_Mutation_p.G400R	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	442					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				GCTGGCCAACGGGGATGTCTG	0.607													54	90					0	0	0.014410	0	0
PTPRT	11122	broad.mit.edu	37	20	40735467	40735467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:40735467G>A	uc002xkg.2	-	24	3533	c.3349C>T	c.(3349-3351)CGT>TGT	p.R1117C	PTPRT_uc010ggj.2_Missense_Mutation_p.R1136C|PTPRT_uc010ggi.2_Missense_Mutation_p.R320C	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1117	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CGGAGCTCACGCACGCAGTTG	0.582													16	51					0	0	0.004007	0	0
PTPRT	11122	broad.mit.edu	37	20	41076885	41076885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:41076885G>A	uc002xkg.2	-	9	1719	c.1535C>T	c.(1534-1536)ACC>ATC	p.T512I	PTPRT_uc010ggj.2_Missense_Mutation_p.T512I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	512	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GACCCCATTGGTCTCATTGGG	0.493													20	128					0	0	0.014323	0	0
SERINC3	10955	broad.mit.edu	37	20	43139984	43139985	+	Missense_Mutation	DNP	GG	AA	AA	rs11559232		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:43139984_43139985GG>AA	uc002xme.2	-	4	554_555	c.420_421CC>TT	c.(418-423)GCCCTT>GCTTTT	p.L141F	SERINC3_uc002xmf.1_Missense_Mutation_p.L141F|SERINC3_uc010ggs.1_Missense_Mutation_p.L134F|SERINC3_uc010zwp.1_Missense_Mutation_p.L86F	NM_198941	NP_945179	Q13530	SERC3_HUMAN	tumor differentially expressed protein 1	141	Helical; (Potential).					integral to membrane|plasma membrane	protein binding			skin(3)	3		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.000291)|COAD - Colon adenocarcinoma(18;0.00189)			ATTCCAATAAGGGCAGCAATTT	0.351													9	32					0	0	0.004672	0	0
RBPJL	11317	broad.mit.edu	37	20	43945438	43945438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:43945438C>T	uc002xns.2	+	12	1465	c.1393C>T	c.(1393-1395)CTC>TTC	p.L465F	RBPJL_uc002xnt.2_Missense_Mutation_p.A468V	NM_014276	NP_055091	Q9UBG7	RBPJL_HUMAN	recombining binding protein L	465	IPT/TIG.				signal transduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CGCCGACGGGCTCTTCTACCC	0.706													6	36					0	0	0.001168	0	0
WFDC8	90199	broad.mit.edu	37	20	44207873	44207873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:44207873C>T	uc002xow.2	-	1	93	c.14G>A	c.(13-15)CGA>CAA	p.R5Q	WFDC8_uc002xox.2_Missense_Mutation_p.R5Q	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	5						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TCCTTCAGTTCGGACAGTCCA	0.562													40	63					0	0	0.014410	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354946	45354946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:45354946C>T	uc002xsl.2	+	2	1368	c.1271C>T	c.(1270-1272)TCC>TTC	p.S424F		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	424	Helical; Name=10; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGTGCCTTCTCCTTTGGGTTT	0.612													11	18					0	0	0.008291	0	0
COL20A1	57642	broad.mit.edu	37	20	61947958	61947958	+	Missense_Mutation	SNP	C	T	T	rs34781242		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr20:61947958C>T	uc011aau.1	+	21	2678	c.2578C>T	c.(2578-2580)CGG>TGG	p.R860W	COL20A1_uc011aav.1_Missense_Mutation_p.R681W	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	860	TSP N-terminal.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					TGCGTCCATCCGGGGCGTGGC	0.637													3	0					0	0	0.009096	0	0
TPTE	7179	broad.mit.edu	37	21	10910313	10910313	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr21:10910313G>A	uc002yip.1	-	22	1811	c.1443C>T	c.(1441-1443)TTC>TTT	p.F481F	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.F463F|TPTE_uc002yir.1_Silent_p.F443F|TPTE_uc010gkv.1_Silent_p.F343F	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	481	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCACCGAATAGAAAAACTGCA	0.368													6	92					0	0	0.003163	0	0
TPTE	7179	broad.mit.edu	37	21	10920142	10920142	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr21:10920142T>C	uc002yip.1	-	19	1480	c.1112A>G	c.(1111-1113)GAA>GGA	p.E371G	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.E353G|TPTE_uc002yir.1_Missense_Mutation_p.E333G|TPTE_uc010gkv.1_Missense_Mutation_p.E233G	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	371	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGTTCGCCTTTCTCCAAAATA	0.373													6	76					0	0	0.004482	0	0
DSCAM	1826	broad.mit.edu	37	21	41684189	41684189	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr21:41684189C>T	uc002yyq.1	-	9	2333	c.1881G>A	c.(1879-1881)ACG>ACA	p.T627T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	627	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCCAGGTGATCGTGATGGGTA	0.532													7	18					0	0	0.001984	0	0
CECR2	27443	broad.mit.edu	37	22	18022561	18022561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr22:18022561C>T	uc010gqw.1	+	15	2789	c.2663C>T	c.(2662-2664)CCC>CTC	p.P888L	CECR2_uc010gqv.1_Missense_Mutation_p.P747L|CECR2_uc002zml.2_Missense_Mutation_p.P747L	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	930					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CCTGCACACCCCCGTTTACCT	0.637													34	37					0	0	0.007835	0	0
DAZL	1618	broad.mit.edu	37	3	16635245	16635245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:16635245C>T	uc003cbb.2	-	9	946	c.652G>A	c.(652-654)GAA>AAA	p.E218K	DAZL_uc003cba.2_Missense_Mutation_p.E238K	NM_001351	NP_001342	Q92904	DAZL_HUMAN	deleted in azoospermia-like	218					germ cell development|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding|translation activator activity				0						GGATCAACTTCATTACAGTGG	0.338													7	21					0	0	0.004482	0	0
TRANK1	9881	broad.mit.edu	37	3	36898673	36898673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:36898673G>A	uc003cgj.2	-	3	1060	c.758C>T	c.(757-759)TCT>TTT	p.S253F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	803					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TACCTTACTAGACAGCTTCTT	0.517													45	115					0	0	0.014410	0	0
SCN11A	11280	broad.mit.edu	37	3	38938387	38938387	+	Silent	SNP	T	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:38938387T>G	uc011ays.1	-	14	2551	c.2352A>C	c.(2350-2352)TCA>TCC	p.S784S	SCN11A_uc010hhn.1_5'Flank	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	784	II.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CACACAATGATGATGATGCAT	0.398													5	27					0	0	0.001984	0	0
SLC6A20	54716	broad.mit.edu	37	3	45804443	45804443	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:45804443C>T	uc011bai.1	-	9	1549	c.1425G>A	c.(1423-1425)GTG>GTA	p.V475V	SLC6A20_uc003cow.2_Silent_p.V125V|SLC6A20_uc011baj.1_Silent_p.V438V	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	475	Helical; Name=10; (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		CAATCGTCTCCACCAGCACGA	0.582													14	58					0	0	0.003163	0	0
CELSR3	1951	broad.mit.edu	37	3	48669205	48669205	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:48669205G>A	uc003cuf.1	-	43	10995	c.10995C>T	c.(10993-10995)CCC>CCT	p.P3665P	SLC26A6_uc003cug.2_Silent_p.P239P|SLC26A6_uc003cuh.2_Silent_p.P260P|SLC26A6_uc010hke.2_Silent_p.P111P|SLC26A6_uc003cuk.2_Silent_p.P153P|SLC26A6_uc003cui.2_Silent_p.P260P|SLC26A6_uc003cuj.2_Silent_p.P260P|SLC26A6_uc011bbp.1_Silent_p.P224P	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCTTGCTCTGGGGCAGCTTCC	0.627													11	46					0	0	0.010729	0	0
IQCF3	401067	broad.mit.edu	37	3	51864710	51864710	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:51864710C>T	uc010hlx.1	+	5	699	c.358C>T	c.(358-360)CAG>TAG	p.Q120*	IQCF1_uc003dbq.3_Intron|IQCF3_uc010hlw.1_RNA|IQCF3_uc011bdw.1_RNA	NM_001085479	NP_001078948	P0C7M6	IQCF3_HUMAN	IQ motif containing F3	120										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CTGCTTGTTCCAGGTCCCAGA	0.532													15	30					0	0	0.020292	0	0
GNL3	26354	broad.mit.edu	37	3	52721361	52721361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:52721361G>A	uc003dfd.2	+	3	345	c.172G>A	c.(172-174)GAG>AAG	p.E58K	PBRM1_uc003dey.2_5'Flank|GNL3_uc011beh.1_RNA|GNL3_uc003dfe.2_Missense_Mutation_p.E46K|GNL3_uc003dff.2_Missense_Mutation_p.E46K|SNORD19_uc003dfg.1_5'Flank	NM_014366	NP_055181	Q9BVP2	GNL3_HUMAN	guanine nucleotide binding protein-like 3	58	Potential.				regulation of cell proliferation	nucleolus	GTP binding|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;6.75e-05)|Kidney(197;0.000611)|KIRC - Kidney renal clear cell carcinoma(197;0.000773)|OV - Ovarian serous cystadenocarcinoma(275;0.048)		TCCCTTTAAGGAGGCTCTTCT	0.428													18	65					0	0	0.008871	0	0
FILIP1L	11259	broad.mit.edu	37	3	99643115	99643115	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:99643115C>T	uc003dtm.2	-	4	1027	c.564G>A	c.(562-564)AAG>AAA	p.K188K	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Silent_p.K188K	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	188	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						ATTCATCACTCTTCTCCATGT	0.353													7	81					0	0	0.001984	0	0
ZBED2	79413	broad.mit.edu	37	3	111312497	111312497	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:111312497C>T	uc003dxy.2	-	2	1437	c.552G>A	c.(550-552)GTG>GTA	p.V184V	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	184							DNA binding|metal ion binding			skin(1)	1						TGGCCCTTTCCACCTCCTCCA	0.582													14	25					0	0	0.020292	0	0
STXBP5L	9515	broad.mit.edu	37	3	120952497	120952497	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:120952497G>A	uc003eec.3	+	12	1286	c.1146G>A	c.(1144-1146)CTG>CTA	p.L382L	STXBP5L_uc011bji.1_Silent_p.L382L	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	382	WD 7.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TGGTACTTCTGGAGAAAGATC	0.284													5	18					0	0	0.001984	0	0
HLTF	6596	broad.mit.edu	37	3	148793736	148793736	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:148793736G>A	uc003ewq.1	-	3	545	c.327C>T	c.(325-327)GGC>GGT	p.G109G	HLTF_uc003ewr.1_Silent_p.G109G|HLTF_uc003ews.1_Silent_p.G109G|HLTF_uc010hve.1_Silent_p.G109G	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	109					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TCTTTAAATGGCCAACTTGAT	0.318													18	20					0	0	0.004990	0	0
CLRN1	7401	broad.mit.edu	37	3	150645783	150645783	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:150645783G>A	uc003eyk.1	-	3	930	c.639C>T	c.(637-639)TTC>TTT	p.F213F	CLRN1OS_uc011bny.1_Intron|CLRN1_uc003eyj.2_Intron	NM_174878	NP_777367	P58418	CLRN1_HUMAN	clarin 1 isoform a	213					equilibrioception|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			TTGCAAAAGGGAACTGAAATC	0.368													12	50					0	0	0.010729	0	0
IGSF10	285313	broad.mit.edu	37	3	151164727	151164727	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:151164727C>T	uc011bod.1	-	4	3042	c.3042G>A	c.(3040-3042)AGG>AGA	p.R1014R		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1014					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CGCCAATTTTCCTCTGCCTCC	0.493													19	36					0	0	0.007413	0	0
PLCH1	23007	broad.mit.edu	37	3	155200041	155200041	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:155200041G>A	uc011bok.1	-	23	4075	c.3798C>T	c.(3796-3798)ACC>ACT	p.T1266T	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.T1228T	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1266					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CATGTTTGGTGGTCTCAGAAC	0.468													10	80					0	0	0.008291	0	0
WDR49	151790	broad.mit.edu	37	3	167319957	167319957	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:167319957G>A	uc003fev.1	-	3	516	c.210C>T	c.(208-210)TTC>TTT	p.F70F	WDR49_uc011bpd.1_Silent_p.F123F|WDR49_uc003few.1_Silent_p.F411F	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	70	WD 2.									large_intestine(1)|ovary(1)|skin(1)	3						TTTCCACAAAGAATTGGACGG	0.398													7	48					0	0	0.001984	0	0
MECOM	2122	broad.mit.edu	37	3	168833529	168833529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:168833529G>A	uc003ffi.3	-	7	1836	c.1567C>T	c.(1567-1569)CCT>TCT	p.P523S	MECOM_uc010hwk.1_Missense_Mutation_p.P546S|MECOM_uc003ffj.3_Missense_Mutation_p.P588S|MECOM_uc011bpi.1_Missense_Mutation_p.P524S|MECOM_uc003ffn.3_Missense_Mutation_p.P523S|MECOM_uc003ffk.2_Missense_Mutation_p.P523S|MECOM_uc003ffl.2_Missense_Mutation_p.P683S|MECOM_uc011bpj.1_Missense_Mutation_p.P711S|MECOM_uc011bpk.1_Missense_Mutation_p.P513S|MECOM_uc010hwn.2_Missense_Mutation_p.P711S	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	523					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TCTCTATCAGGAAATGGGTAC	0.453													7	35					0	0	0.001984	0	0
SLC7A14	57709	broad.mit.edu	37	3	170219037	170219037	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:170219037G>A	uc003fgz.2	-	3	718	c.402C>T	c.(400-402)TTC>TTT	p.F134F	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	134	Helical; (Potential).					integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			TCCAGCCAATGAAAAATGCCA	0.537													7	17					0	0	0.003080	0	0
SPATA16	83893	broad.mit.edu	37	3	172631500	172631500	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:172631500A>C	uc003fin.3	-	10	1696	c.1538T>G	c.(1537-1539)CTT>CGT	p.L513R		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	513					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TCTTCCTTCAAGGGTGTCCAT	0.363													6	33					0	0	0.003080	0	0
KCNMB2	10242	broad.mit.edu	37	3	178546031	178546031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:178546031C>T	uc003fjd.2	+	4	636	c.293C>T	c.(292-294)TCC>TTC	p.S98F	uc003fjb.1_Intron|uc003fjc.1_Intron|KCNMB2_uc003fje.2_Missense_Mutation_p.S98F|KCNMB2_uc003fjf.2_Missense_Mutation_p.S98F|KCNMB2_uc011bqa.1_Intron|KCNMB2_uc011bqb.1_Intron	NM_181361	NP_852006	Q9Y691	KCMB2_HUMAN	calcium-activated potassium channel beta 2	98	Extracellular (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of vasoconstriction	voltage-gated potassium channel complex	calcium-activated potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(1)	1	all_cancers(143;5.38e-18)|Ovarian(172;0.00769)|Breast(254;0.125)		OV - Ovarian serous cystadenocarcinoma(80;1.32e-27)|GBM - Glioblastoma multiforme(14;0.0321)|BRCA - Breast invasive adenocarcinoma(182;0.0841)			TTTAATTGCTCCTTCAGCTGT	0.522													5	37					0	0	0.001168	0	0
EIF4G1	1981	broad.mit.edu	37	3	184040934	184040934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:184040934G>A	uc003fnp.2	+	14	2191	c.1993G>A	c.(1993-1995)GAC>AAC	p.D665N	EIF4G1_uc003fno.1_Missense_Mutation_p.D606N|EIF4G1_uc010hxw.1_Missense_Mutation_p.D501N|EIF4G1_uc003fnt.2_Missense_Mutation_p.D376N|EIF4G1_uc003fnq.2_Missense_Mutation_p.D578N|EIF4G1_uc003fnr.2_Missense_Mutation_p.D501N|EIF4G1_uc010hxx.2_Missense_Mutation_p.D672N|EIF4G1_uc003fns.2_Missense_Mutation_p.D625N|EIF4G1_uc010hxy.2_Missense_Mutation_p.D672N|EIF4G1_uc003fnv.3_Missense_Mutation_p.D665N|EIF4G1_uc003fnu.3_Missense_Mutation_p.D665N|EIF4G1_uc003fnw.2_Missense_Mutation_p.D672N|EIF4G1_uc003fnx.2_Missense_Mutation_p.D469N|EIF4G1_uc003fny.3_Missense_Mutation_p.D469N|SNORD66_uc003fnz.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	665	MIF4G.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TTGTGGCCCAGACTTCACTCC	0.597													14	58					0	0	0.020292	0	0
EHHADH	1962	broad.mit.edu	37	3	184922264	184922264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:184922264G>A	uc003fpf.2	-	6	877	c.850C>T	c.(850-852)CCC>TCC	p.P284S	EHHADH_uc011brs.1_Missense_Mutation_p.P188S	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	284	3-hydroxyacyl-CoA dehydrogenase.					peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	GCTCCGGAGGGAGTTGACCAC	0.493													24	58					0	0	0.021523	0	0
DGKG	1608	broad.mit.edu	37	3	186015888	186015888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:186015888G>A	uc003fqa.2	-	4	812	c.275C>T	c.(274-276)ACG>ATG	p.T92M	DGKG_uc003fqb.2_Missense_Mutation_p.T92M|DGKG_uc003fqc.2_Missense_Mutation_p.T92M|DGKG_uc011brx.1_Missense_Mutation_p.T92M	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	92					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	GGCTCCCTCCGTCGGGTGGTC	0.617													16	46					0	0	0.008871	0	0
GP5	2814	broad.mit.edu	37	3	194118415	194118415	+	Silent	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:194118415A>G	uc003ftv.1	-	2	628	c.597T>C	c.(595-597)CTT>CTC	p.L199L		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	199	Extracellular (Potential).|LRR 6.				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		AGTGGAGCAGAAGTCTCTCGA	0.557													15	36					0	0	0.020292	0	0
TNK2	10188	broad.mit.edu	37	3	195610038	195610038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr3:195610038G>A	uc003fvu.1	-	5	1142	c.599C>T	c.(598-600)CCC>CTC	p.P200L	TNK2_uc003fvs.1_Missense_Mutation_p.P232L|TNK2_uc003fvt.1_Missense_Mutation_p.P263L|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_Missense_Mutation_p.P30L|TNK2_uc010hzx.1_Missense_Mutation_p.P214L	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	200	Protein kinase.				positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	CATCTTCATGGGCGGCGTGAG	0.627													4	18					0	0	0.009096	0	0
DGKQ	1609	broad.mit.edu	37	4	959282	959282	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:959282G>A	uc003gbw.2	-	14	1689	c.1615C>T	c.(1615-1617)CAA>TAA	p.Q539*	DGKQ_uc010ibn.2_Intron	NM_001347	NP_001338	P52824	DGKQ_HUMAN	diacylglycerol kinase, theta	539					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|platelet activation|protein kinase C signaling cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to ATP|thrombin receptor signaling pathway	cytoskeleton|cytosol|nuclear speck|plasma membrane	activating transcription factor binding|ATP binding|diacylglycerol kinase activity|kinase binding|metal ion binding|phospholipase binding			kidney(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			AGCTCACCTTGGGAGGAGTAG	0.647													9	10					0	0	0.008291	0	0
KIAA0232	9778	broad.mit.edu	37	4	6860184	6860184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:6860184C>T	uc003gjr.3	+	6	932	c.469C>T	c.(469-471)CCC>TCC	p.P157S	KIAA0232_uc003gjq.3_Missense_Mutation_p.P157S	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	157							ATP binding			ovary(2)	2						AGAGGGGTCTCCCTCTCCAGA	0.328													7	21					0	0	0.003080	0	0
BOD1L	259282	broad.mit.edu	37	4	13616102	13616102	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:13616102T>A	uc003gmz.1	-	4	1009	c.892A>T	c.(892-894)AAT>TAT	p.N298Y	BOD1L_uc010idr.1_5'UTR|BOD1L_uc010ids.1_RNA	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	298							DNA binding			ovary(5)|breast(1)	6						ATTAAATTATTATGCTCTTTT	0.388													12	26					0	0	0.016723	0	0
SLC34A2	10568	broad.mit.edu	37	4	25674773	25674773	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:25674773C>T	uc003grr.2	+	10	1194	c.1113C>T	c.(1111-1113)CTC>CTT	p.L371L	SLC34A2_uc003grs.2_Silent_p.L370L|SLC34A2_uc010iev.2_Silent_p.L370L	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	371	Helical; Name=M4; (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TGCTCATACTCTCCCTGCTGG	0.517													36	78					0	0	0.019004	0	0
TBC1D1	23216	broad.mit.edu	37	4	38055922	38055922	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:38055922C>T	uc003gtb.2	+	12	2356	c.2013C>T	c.(2011-2013)ACC>ACT	p.T671T	TBC1D1_uc011byd.1_Silent_p.T765T|TBC1D1_uc010ifd.2_Silent_p.T458T|TBC1D1_uc011byf.1_Silent_p.T542T	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	671						nucleus	Rab GTPase activator activity			ovary(1)	1						GAGTAGCCACCCCGCAGAAGG	0.542													31	84					0	0	0.015359	0	0
GRXCR1	389207	broad.mit.edu	37	4	43032468	43032468	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:43032468C>T	uc003gwt.2	+	4	784	c.784C>T	c.(784-786)CGA>TGA	p.R262*		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	262					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						GTCCATGTTTCGAAACTGCTT	0.473													42	81					0	0	0.014410	0	0
PARM1	25849	broad.mit.edu	37	4	75937662	75937662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:75937662C>T	uc003hih.1	+	2	311	c.71C>T	c.(70-72)TCA>TTA	p.S24L		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	24	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						CTGCCTACATCAGCTCCTTTG	0.463													24	26					0	0	0.005443	0	0
FRAS1	80144	broad.mit.edu	37	4	79399128	79399128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:79399128G>A	uc003hlb.2	+	55	8451	c.8011G>A	c.(8011-8013)GAG>AAG	p.E2671K		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2666	Extracellular (Potential).|Calx-beta 2.				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CAACGATACCGAGGATGAACC	0.458													4	15					0	0	0.009096	0	0
HERC5	51191	broad.mit.edu	37	4	89384699	89384699	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:89384699C>T	uc003hrt.2	+	5	858	c.705C>T	c.(703-705)TCC>TCT	p.S235S		NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	235	RCC1 3.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		ATGATCCATCCCTTATTGAAG	0.438													9	63					0	0	0.008291	0	0
MYOZ2	51778	broad.mit.edu	37	4	120079242	120079242	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:120079242C>T	uc003icp.3	+	4	525	c.312C>T	c.(310-312)GCC>GCT	p.A104A		NM_016599	NP_057683	Q9NPC6	MYOZ2_HUMAN	myozenin 2	104							protein phosphatase 2B binding				0						CGCAGCAAGCCCCCTTGACTC	0.453													23	69					0	0	0.018920	0	0
FAT4	79633	broad.mit.edu	37	4	126369700	126369700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:126369700C>T	uc003ifj.3	+	9	7529	c.7529C>T	c.(7528-7530)TCT>TTT	p.S2510F	FAT4_uc011cgp.1_Missense_Mutation_p.S808F|FAT4_uc003ifi.1_5'UTR	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2510	Extracellular (Potential).|Cadherin 24.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGTAGAAATTCTGAAAAATTT	0.418													28	41					0	0	0.005443	0	0
FAT4	79633	broad.mit.edu	37	4	126412372	126412372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:126412372C>T	uc003ifj.3	+	17	14395	c.14395C>T	c.(14395-14397)CGC>TGC	p.R4799C	FAT4_uc011cgp.1_Missense_Mutation_p.R3040C|FAT4_uc003ifi.1_Missense_Mutation_p.R2276C	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4799	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAACACACCTCGCCCTAGAAA	0.532													15	57					0	0	0.004007	0	0
UCP1	7350	broad.mit.edu	37	4	141489766	141489767	+	Missense_Mutation	DNP	GG	AA	AA	rs150067245	byFrequency	TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:141489766_141489767GG>AA	uc011chj.1	-	1	193_194	c.117_118CC>TT	c.(115-120)GTCCGG>GTTTGG	p.R40W	UCP1_uc011chk.1_Missense_Mutation_p.R40W	NM_021833	NP_068605	P25874	UCP1_HUMAN	uncoupling protein 1	40	Solcar 1.				brown fat cell differentiation|cellular lipid metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	all_hematologic(180;0.162)					ACCTGGAGCCGGACTTTGGCCG	0.594													14	20					0	0	0.004672	0	0
FGB	2244	broad.mit.edu	37	4	155487751	155487751	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:155487751G>A	uc003ioa.3	+	3	456	c.417G>A	c.(415-417)CAG>CAA	p.Q139Q	FGB_uc010ipu.1_RNA|FGB_uc003iob.3_Silent_p.Q136Q|FGB_uc010ipv.2_Silent_p.Q77Q|FGB_uc010ipw.2_Silent_p.Q136Q|FGB_uc003ioc.3_Intron	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	139				SQ -> QS (in Ref. 11; AA sequence and 12; AA sequence).	platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	CTGTTTCCCAGACCTCCTCTT	0.423													15	57					0	0	0.003163	0	0
LRAT	9227	broad.mit.edu	37	4	155665867	155665867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:155665867C>T	uc003iom.1	+	1	716	c.389C>T	c.(388-390)TCC>TTC	p.S130F	uc003iol.2_Intron|LRAT_uc003ion.1_Missense_Mutation_p.S130F	NM_004744	NP_004735	O95237	LRAT_HUMAN	lecithin retinol acyltransferase	130	Cytoplasmic (By similarity).				response to stimulus|retinoid metabolic process|steroid metabolic process|visual perception	endoplasmic reticulum membrane|integral to membrane|multivesicular body|perinuclear region of cytoplasm|rough endoplasmic reticulum	phosphatidylcholine-retinol O-acyltransferase activity			central_nervous_system(1)	1	all_hematologic(180;0.215)	Renal(120;0.0458)			Vitamin A(DB00162)	CTGGACGAGTCCCTCCAGAAA	0.582													7	28					0	0	0.004482	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156634438	156634438	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:156634438G>A	uc003iov.2	+	8	1811	c.1275G>A	c.(1273-1275)CTG>CTA	p.L425L	GUCY1A3_uc010iqc.2_Silent_p.L425L|GUCY1A3_uc003iow.2_Silent_p.L425L|GUCY1A3_uc010iqd.2_Silent_p.L424L|GUCY1A3_uc003iox.2_Silent_p.L425L|GUCY1A3_uc003ioz.2_Silent_p.L190L|GUCY1A3_uc003ioy.2_Silent_p.L425L|GUCY1A3_uc010iqe.2_Silent_p.L190L|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Silent_p.L425L	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	425					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		AAGATGGCCTGAAGAAGAGGC	0.512													11	35					0	0	0.016723	0	0
FSTL5	56884	broad.mit.edu	37	4	162508617	162508617	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:162508617G>A	uc003iqh.2	-	8	1441	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	FSTL5_uc003iqi.2_Silent_p.F334F|FSTL5_uc010iqv.2_Silent_p.F334F	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	335	Ig-like 1.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CATTCACTTGGAAGATGTGAG	0.373													25	35					0	0	0.006320	0	0
NPY5R	4889	broad.mit.edu	37	4	164271499	164271499	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:164271499C>G	uc003iqn.2	+	4	256	c.74C>G	c.(73-75)TCT>TGT	p.S25C		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	25	Extracellular (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				ACTCGGAATTCTGATTTCCCA	0.388													14	44					0	0	0.020292	0	0
SH3RF1	57630	broad.mit.edu	37	4	170028181	170028181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:170028181G>A	uc003isa.1	-	11	2650	c.2315C>T	c.(2314-2316)TCC>TTC	p.S772F		NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	772						Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		CACAGGGCAGGAGCCTGCCCT	0.662													4	27					0	0	0.009096	0	0
FAM149A	25854	broad.mit.edu	37	4	187074901	187074901	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:187074901C>G	uc003iyt.3	+	5	768	c.189C>G	c.(187-189)TGC>TGG	p.C63W	FAM149A_uc011cla.1_Missense_Mutation_p.C63W|FAM149A_uc010isj.2_Missense_Mutation_p.C63W|FAM149A_uc010isk.2_RNA|FAM149A_uc003iyu.3_Missense_Mutation_p.C63W|FAM149A_uc010isl.2_Missense_Mutation_p.C63W|FAM149A_uc011clb.1_Missense_Mutation_p.C63W	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	354										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		TCAGTGCCTGCGGACACAGCA	0.468													40	98					0	0	0.008740	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	157008	157008	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:157008C>T	uc003jak.2	+	9	1451	c.1401C>T	c.(1399-1401)CTC>CTT	p.L467L		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	467					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		TGGCGTCACTCCTGGAAGGGA	0.632													6	14					0	0	0.001168	0	0
DNAH5	1767	broad.mit.edu	37	5	13776634	13776634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:13776634C>T	uc003jfd.2	-	55	9329	c.9287G>A	c.(9286-9288)CGA>CAA	p.R3096Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3096	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGCTCTGTTTCGAAATTTCTC	0.478									Kartagener_syndrome				10	44					0	0	0.006214	0	0
PDE4D	5144	broad.mit.edu	37	5	58489357	58489357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:58489357C>T	uc003jsa.2	-	3	825	c.653G>A	c.(652-654)GGA>GAA	p.G218E	PDE4D_uc003jrx.2_Missense_Mutation_p.G82E|PDE4D_uc003jry.2_5'UTR|PDE4D_uc003jrz.2_Missense_Mutation_p.G154E|PDE4D_uc003jsb.2_Missense_Mutation_p.G157E|PDE4D_uc003jsc.2_Missense_Mutation_p.G154E|PDE4D_uc003jrv.2_Missense_Mutation_p.G88E|PDE4D_uc003jrw.2_Missense_Mutation_p.G96E|PDE4D_uc010iwi.1_Missense_Mutation_p.G50E	NM_001104631	NP_001098101	Q08499	PDE4D_HUMAN	phosphodiesterase 4D isoform 1	218					signal transduction	cytosol|insoluble fraction|membrane|microtubule organizing center|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(5;6.5e-58)|all_epithelial(5;1.75e-57)|all_lung(5;6.84e-18)|Lung NSC(5;1.29e-17)|Melanoma(5;0.00168)|Prostate(74;0.00234)|Colorectal(97;0.00629)|Ovarian(174;0.00832)|Breast(144;0.00996)|all_hematologic(6;0.0344)|Hepatocellular(6;0.0742)|Esophageal squamous(6;0.0954)		Epithelial(2;2.6e-55)|all cancers(2;2.66e-49)|OV - Ovarian serous cystadenocarcinoma(10;1.48e-39)|Colorectal(2;8.29e-08)|Lung(2;4.47e-07)|STAD - Stomach adenocarcinoma(2;1.11e-05)|COAD - Colon adenocarcinoma(2;0.00012)|LUSC - Lung squamous cell carcinoma(2;0.000775)|LUAD - Lung adenocarcinoma(3;0.0173)|READ - Rectum adenocarcinoma(2;0.0276)	Adenosine monophosphate(DB00131)|Dyphylline(DB00651)	CAAGTCATCTCCGTGTCTGAA	0.398													5	16					0	0	0.001984	0	0
IPO11	51194	broad.mit.edu	37	5	61779893	61779893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:61779893C>T	uc003jtc.2	+	11	1268	c.1078C>T	c.(1078-1080)CCT>TCT	p.P360S	IPO11_uc011cqr.1_Missense_Mutation_p.P400S|IPO11_uc003jtb.1_Missense_Mutation_p.P360S	NM_016338	NP_057422	Q9UI26	IPO11_HUMAN	Ran binding protein 11 isoform 2	360						cytoplasm|nucleus	protein binding			lung(2)|skin(2)	4		Lung NSC(810;8.99e-06)|Prostate(74;0.0235)|Ovarian(174;0.0511)|Breast(144;0.077)		Lung(70;0.0613)		CTTCACATATCCTACTTTGAC	0.353													6	46					0	0	0.001168	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64511204	64511204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:64511204C>T	uc003jtp.2	-	19	3197	c.2383G>A	c.(2383-2385)GAA>AAA	p.E795K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.E416K	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	795	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GATTCTGGTTCATCAGTTGGT	0.398													18	35					0	0	0.007413	0	0
MAP1B	4131	broad.mit.edu	37	5	71411610	71411610	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:71411610C>T	uc003kbw.3	+	2	511	c.270C>T	c.(268-270)TTC>TTT	p.F90F	MAP1B_uc010iyw.1_Silent_p.F90F|MAP1B_uc010iyx.1_5'UTR	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	90						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		CTGCAAGATTCTCTCCTGAAG	0.468													4	57					0	0	0.001984	0	0
ZNF366	167465	broad.mit.edu	37	5	71756238	71756238	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:71756238C>T	uc003kce.1	-	2	1272	c.1086G>A	c.(1084-1086)GGG>GGA	p.G362G		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	362					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		TGTTCTCGCGCCCACTGGCGT	0.657													5	23					0	0	0.001168	0	0
SV2C	22987	broad.mit.edu	37	5	75587119	75587119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:75587119G>A	uc003kei.1	+	7	1345	c.1211G>A	c.(1210-1212)AGG>AAG	p.R404K		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	404	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		ACATGGTATAGGAGGTGTTTT	0.403													4	17					0	0	0.014758	0	0
GPR98	84059	broad.mit.edu	37	5	89990343	89990343	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:89990343C>T	uc003kju.2	+	33	7866	c.7770C>T	c.(7768-7770)TCC>TCT	p.S2590S	GPR98_uc003kjt.2_Silent_p.S296S|GPR98_uc003kjv.2_Silent_p.S190S	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2590	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCAATACTTCCGAAGATGGCT	0.453													16	160					0	0	0.004007	0	0
MCTP1	79772	broad.mit.edu	37	5	94275821	94275821	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:94275821G>A	uc003kkx.2	-	5	1140	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I	MCTP1_uc003kkv.2_Silent_p.I159I|MCTP1_uc003kkw.2_Silent_p.I159I|MCTP1_uc003kkz.2_Silent_p.I41I	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	380					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		TAGGGGTAAGGATGACTGAGA	0.448													12	109					0	0	0.003163	0	0
TRIM36	55521	broad.mit.edu	37	5	114462242	114462242	+	Silent	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:114462242T>C	uc003kqs.2	-	10	2654	c.2145A>G	c.(2143-2145)GAA>GAG	p.E715E	TRIM36_uc011cwc.1_Silent_p.E703E|TRIM36_uc003kqt.2_Silent_p.E560E	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	715	B30.2/SPRY.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		CTGTGATGGGTTCTTCAAGCT	0.408													5	25					0	0	0.001984	0	0
FAM170A	340069	broad.mit.edu	37	5	118969690	118969690	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:118969690C>T	uc003ksm.2	+	3	457	c.247C>T	c.(247-249)CAA>TAA	p.Q83*	FAM170A_uc003ksl.2_Nonsense_Mutation_p.Q83*|FAM170A_uc003ksn.2_Nonsense_Mutation_p.Q83*|FAM170A_uc003kso.2_Nonsense_Mutation_p.Q36*	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	83						intracellular	zinc ion binding			skin(1)	1						CCCCCAGCCTCAATCACCCCT	0.522													12	21					0	0	0.010729	0	0
SPOCK1	6695	broad.mit.edu	37	5	136448179	136448179	+	Missense_Mutation	SNP	G	A	A	rs148446530		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:136448179G>A	uc003lbo.2	-	4	610	c.419C>T	c.(418-420)CCC>CTC	p.P140L	SPOCK1_uc003lbp.2_Missense_Mutation_p.P140L	NM_004598	NP_004589	Q08629	TICN1_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	140	Kazal-like.				cell adhesion|cell proliferation|cellular component movement|nervous system development|signal transduction	proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CTGTGCCACGGGACAGGGCTT	0.463													8	31					0	0	0.004482	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182636	140182636	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:140182636G>A	uc003lhf.2	+	1	1854	c.1854G>A	c.(1852-1854)GCG>GCA	p.A618A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.A618A	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	618	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCGGCGGTGCGCGCATCCCGT	0.672													5	19					0	0	0.001168	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516577	140516577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:140516577G>A	uc003liq.2	+	1	1778	c.1561G>A	c.(1561-1563)GAG>AAG	p.E521K		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	521	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTGGACTACGAGGCCCTGCA	0.701													9	51					0	0	0.006214	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573103	140573103	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:140573103C>T	uc003lix.2	+	1	1152	c.978C>T	c.(976-978)GGC>GGT	p.G326G		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	326	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACGGTGGAGGCCTTTCTGCAA	0.378													15	52					0	0	0.003163	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573667	140573667	+	Silent	SNP	C	T	T	rs17844573		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:140573667C>T	uc003lix.2	+	1	1716	c.1542C>T	c.(1540-1542)TTC>TTT	p.F514F		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	514	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCACCTGTTCGCCCTCAGGT	0.701													14	96					0	0	0.010504	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751506	140751506	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:140751506C>T	uc003ljw.1	+	1	1545	c.1545C>T	c.(1543-1545)TTC>TTT	p.F515F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.F515F|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	515	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGTGGTGTTCGCGCAGCGAG	0.672													10	27					0	0	0.006214	0	0
PCDHGB7	56099	broad.mit.edu	37	5	140799340	140799340	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:140799340C>T	uc003lkn.1	+	1	2059	c.1914C>T	c.(1912-1914)GTC>GTT	p.V638V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Silent_p.V638V|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	638	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGACTCGGTCCGCCAGCGCC	0.632													14	24					0	0	0.004990	0	0
KCTD16	57528	broad.mit.edu	37	5	143853596	143853596	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:143853596C>T	uc003lnm.1	+	4	1835	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F	KCTD16_uc003lnn.1_Silent_p.F402F	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	402						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			TCCAGGATTTCCTAAAAATCA	0.428													7	57					0	0	0.003080	0	0
NDST1	3340	broad.mit.edu	37	5	149931403	149931403	+	Missense_Mutation	SNP	G	A	A	rs150060318		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:149931403G>A	uc003lsk.3	+	14	3017	c.2515G>A	c.(2515-2517)GAG>AAG	p.E839K	NDST1_uc011dcj.1_Missense_Mutation_p.E782K	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	839	Heparan sulfate N-sulfotransferase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAAATATCCCGAGATGGACTT	0.498													6	35					0	0	0.001168	0	0
SLC36A2	153201	broad.mit.edu	37	5	150701699	150701699	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:150701699T>C	uc003lty.2	-	9	1218	c.1088A>G	c.(1087-1089)GAA>GGA	p.E363G	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Missense_Mutation_p.E165G|SLC36A2_uc010jhv.2_Missense_Mutation_p.E363G	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	363	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GATGATGATTTCTGCAGGGAC	0.552													12	19					0	0	0.010729	0	0
LARP1	23367	broad.mit.edu	37	5	154173508	154173508	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:154173508C>T	uc003lvp.2	+	6	1446	c.1017C>T	c.(1015-1017)GGC>GGT	p.G339G	LARP1_uc003lvo.2_Silent_p.G262G|LARP1_uc010jie.1_Silent_p.G134G	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	339							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CCTTCCGTGGCCGTGGACGGG	0.682													24	20					0	0	0.018920	0	0
ODZ2	57451	broad.mit.edu	37	5	167631411	167631411	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr5:167631411C>T	uc010jjd.2	+	19	3582	c.3582C>T	c.(3580-3582)TTC>TTT	p.F1194F	ODZ2_uc003lzr.3_Silent_p.F971F|ODZ2_uc003lzt.3_Silent_p.F567F|ODZ2_uc010jje.2_Silent_p.F465F	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AAAACCAGTTCCTGACCCAGC	0.572													7	8					0	0	0.001984	0	0
FKSG83	83954	broad.mit.edu	37	6	27293089	27293089	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:27293089A>T	uc010jqt.2	+	1	512	c.28A>T	c.(28-30)ACC>TCC	p.T10S	FKSG83_uc010jqs.1_3'UTR	NM_032030	NP_114419	Q3KNW7	Q3KNW7_HUMAN	FKSG83	10						integral to membrane	pheromone receptor activity				0						CACCGTAGCCACCAGCAAATC	0.358													74	105					0	0	0.014410	0	0
SCAND3	114821	broad.mit.edu	37	6	28542663	28542663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:28542663C>T	uc003nlo.2	-	3	2437	c.1819G>A	c.(1819-1821)GAA>AAA	p.E607K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	607					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CATTCTTTTTCACAAACTACA	0.418													19	25					0	0	0.006122	0	0
MOG	4340	broad.mit.edu	37	6	29627428	29627428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:29627428G>A	uc003nnf.2	+	2	599	c.421G>A	c.(421-423)GAA>AAA	p.E141K	MOG_uc003qzk.1_Missense_Mutation_p.E141K|MOG_uc010kle.1_Intron|MOG_uc010klf.1_Intron|MOG_uc003nmy.1_Missense_Mutation_p.E141K|MOG_uc003nmz.2_Missense_Mutation_p.E141K|MOG_uc011dlt.1_Missense_Mutation_p.E71K|MOG_uc003nna.2_Intron|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_Missense_Mutation_p.E141K|MOG_uc003nne.2_Missense_Mutation_p.E141K|MOG_uc003nng.2_Missense_Mutation_p.E141K|MOG_uc003nnh.2_Missense_Mutation_p.E141K|MOG_uc003nni.2_Missense_Mutation_p.E141K|MOG_uc003nnj.2_Missense_Mutation_p.E141K|MOG_uc003nnk.2_Missense_Mutation_p.E141K	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	141	Ig-like V-type.|Extracellular (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						GGCAGCAATGGAATTGAAAGT	0.408													8	16					0	0	0.003080	0	0
CSNK2B	1460	broad.mit.edu	37	6	31636405	31636405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:31636405C>T	uc003nvr.1	+	4	605	c.265C>T	c.(265-267)CTT>TTT	p.L89F	BAT4_uc003nvo.3_5'Flank|BAT4_uc003nvp.3_5'Flank|BAT4_uc003nvq.2_5'Flank|CSNK2B_uc010jta.1_3'UTR|CSNK2B_uc003nvs.1_Missense_Mutation_p.L89F|LY6G5B_uc003nvt.1_5'Flank	NM_001320	NP_001311	P67870	CSK2B_HUMAN	casein kinase 2, beta polypeptide	89					adiponectin-mediated signaling pathway|axon guidance|cellular protein complex assembly|negative regulation of cell proliferation|regulation of DNA binding|Wnt receptor signaling pathway	cytosol|nucleus|protein kinase CK2 complex	identical protein binding|protein domain specific binding|protein kinase regulator activity|receptor binding|transcription factor binding				0						CCGCTACATCCTTACCAACCG	0.532													46	158					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32037516	32037516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:32037516C>T	uc003nzl.2	-	15	5603	c.5401G>A	c.(5401-5403)GGC>AGC	p.G1801S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1883	Fibronectin type-III 11.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCAAACTGGCCCTCAGGGACT	0.647													134	173					0	0	0.014410	0	0
C6orf10	10665	broad.mit.edu	37	6	32261093	32261093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:32261093C>T	uc011dpy.1	-	12	1530	c.1357G>A	c.(1357-1359)GGA>AGA	p.G453R	C6orf10_uc011dpx.1_Missense_Mutation_p.G235R	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	453						integral to membrane				skin(1)	1						GATTCTGGTCCTTTCAGTACA	0.463													44	200					0	0	0.013114	0	0
MUT	4594	broad.mit.edu	37	6	49408038	49408038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:49408038G>A	uc003ozg.3	-	11	2092	c.1837C>T	c.(1837-1839)CGC>TGC	p.R613C		NM_000255	NP_000246	P22033	MUTA_HUMAN	methylmalonyl Coenzyme A mutase precursor	613					fatty acid beta-oxidation	mitochondrial matrix	cobalamin binding|metal ion binding|methylmalonyl-CoA mutase activity				0	Lung NSC(77;0.0376)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CGAGGTCTGCGACCTTCACGT	0.353													18	65					0	0	0.007413	0	0
BAI3	577	broad.mit.edu	37	6	69653823	69653823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:69653823G>A	uc003pev.3	+	6	1580	c.1132G>A	c.(1132-1134)GGA>AGA	p.G378R	BAI3_uc010kak.2_Missense_Mutation_p.G378R	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	378	Extracellular (Potential).|TSP type-1 2.				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TCCTCAGTATGGAGGAAGGCC	0.453													42	32					0	0	0.010771	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904810	73904811	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:73904810_73904811GG>AA	uc003pgk.2	+	14	2819_2820	c.2472_2473GG>AA	c.(2470-2475)AAGGAC>AAAAAC	p.D825N	KCNQ5_uc011dyh.1_Missense_Mutation_p.D844N|KCNQ5_uc011dyi.1_Missense_Mutation_p.D835N|KCNQ5_uc010kat.2_Missense_Mutation_p.D816N|KCNQ5_uc011dyj.1_Missense_Mutation_p.D715N|KCNQ5_uc011dyk.1_Missense_Mutation_p.D575N	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	825					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGGTGCCGAAGGACTTGGGCAA	0.49													22	29					0	0	0.004672	0	0
SNAP91	9892	broad.mit.edu	37	6	84366578	84366578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:84366578G>A	uc011dze.1	-	7	870	c.553C>T	c.(553-555)CCA>TCA	p.P185S	SNAP91_uc003pkb.2_Missense_Mutation_p.P150S|SNAP91_uc003pkc.2_Missense_Mutation_p.P185S|SNAP91_uc003pkd.2_Missense_Mutation_p.P185S|SNAP91_uc003pka.2_Missense_Mutation_p.P185S|SNAP91_uc011dzf.1_Missense_Mutation_p.P66S	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	185					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		AGTTCATTTGGATGCACCTAG	0.284													11	6					0	0	0.010729	0	0
GPR63	81491	broad.mit.edu	37	6	97246563	97246563	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:97246563A>T	uc010kcl.2	-	3	1523	c.1045T>A	c.(1045-1047)TTT>ATT	p.F349I	GPR63_uc003pou.2_Missense_Mutation_p.F349I	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	349	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		ATCTCAAAAAAGTTGTGCTGA	0.433													20	28					0	0	0.007413	0	0
BVES	11149	broad.mit.edu	37	6	105563561	105563561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:105563561G>A	uc003pqw.2	-	7	1115	c.958C>T	c.(958-960)CAT>TAT	p.H320Y	BVES_uc003pqx.2_Missense_Mutation_p.H320Y|BVES_uc003pqy.2_Missense_Mutation_p.H320Y	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	blood vessel epicardial substance isoform 5	320	Cytoplasmic (Potential).				epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity				0		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				GATAACTTACGAAGAGAGGAC	0.443													43	25					0	0	0.014410	0	0
ULBP3	79465	broad.mit.edu	37	6	150385816	150385816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr6:150385816G>A	uc003qns.3	-	4	662	c.662C>T	c.(661-663)CCC>CTC	p.P221L	ULBP3_uc011eej.1_Missense_Mutation_p.P96L	NM_024518	NP_078794	Q9BZM4	N2DL3_HUMAN	UL16 binding protein 3 precursor	221					antigen processing and presentation|immune response|natural killer cell activation	anchored to membrane|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.12)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.45e-12)		TATGGCTTTGGGTTGAGCTAA	0.527													31	22					0	0	0.013726	0	0
SUN1	23353	broad.mit.edu	37	7	882989	882989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:882989G>A	uc011jvp.1	+	6	569	c.490G>A	c.(490-492)GCT>ACT	p.A164T	SUN1_uc010ksa.1_Missense_Mutation_p.A185T|SUN1_uc003sje.1_Missense_Mutation_p.A164T|SUN1_uc003sjf.2_Missense_Mutation_p.A114T|SUN1_uc011jvq.1_Intron|SUN1_uc003sjg.2_5'UTR	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	164	Nuclear.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						TGGAAATAAAGCTGCCATTCA	0.473													32	71					0	0	0.012213	0	0
EIF2AK1	27102	broad.mit.edu	37	7	6078276	6078276	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:6078276G>A	uc003spp.2	-	10	1292	c.1146C>T	c.(1144-1146)ATC>ATT	p.I382I	EIF2AK1_uc003spq.2_Silent_p.I381I|EIF2AK1_uc011jwm.1_Silent_p.I258I	NM_014413	NP_055228	Q9BQI3	E2AK1_HUMAN	eukaryotic translation initiation factor 2-alpha	382	Protein kinase.				negative regulation of hemoglobin biosynthetic process|negative regulation of translational initiation by iron|protein autophosphorylation|response to external stimulus|response to stress	cytoplasm	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|heme binding|protein homodimerization activity			upper_aerodigestive_tract(1)|stomach(1)|lung(1)|central_nervous_system(1)	4		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.106)|OV - Ovarian serous cystadenocarcinoma(56;5.22e-14)		GCTGCATCTGGATGTGCAGCA	0.488													19	57					0	0	0.007413	0	0
AQP1	358	broad.mit.edu	37	7	30951842	30951842	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:30951842C>T	uc003tbv.1	+	1	375	c.318C>T	c.(316-318)ATC>ATT	p.I106I	AQP1_uc011kac.1_Silent_p.I166I	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	106	Helical; Name=Helix 3.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	TGGGGGCCATCGTCGCCACCG	0.642													30	75					0	0	0.015359	0	0
PKD1L1	168507	broad.mit.edu	37	7	47869151	47869151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:47869151G>A	uc003tny.1	-	44	6607	c.6607C>T	c.(6607-6609)CAC>TAC	p.H2203Y	C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_5'Flank	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2203	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GTAAAAAAGTGGTTGTCAGCT	0.488													39	144					0	0	0.006999	0	0
KCTD7	154881	broad.mit.edu	37	7	66104188	66104188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:66104188C>T	uc003tve.2	+	4	1001	c.839C>T	c.(838-840)CCC>CTC	p.P280L	RABGEF1_uc003tvf.2_Intron|KCTD7_uc003tvd.3_Missense_Mutation_p.P280L	NM_153033	NP_694578	Q96MP8	KCTD7_HUMAN	potassium channel tetramerisation domain	280						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)	3						TGCAAGCGCCCCATCTATGAG	0.587													14	36					0	0	0.016723	0	0
AUTS2	26053	broad.mit.edu	37	7	70228046	70228046	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:70228046G>A	uc003tvw.3	+	7	1676	c.933G>A	c.(931-933)ACG>ACA	p.T311T	AUTS2_uc003tvx.3_Silent_p.T311T	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	311										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		AGCCGCAGACGGAGCCCCAAC	0.617													10	30					0	0	0.008291	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657681	72657681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:72657681G>A	uc003txs.1	-	13	2231	c.1303C>T	c.(1303-1305)CCC>TCC	p.P435S	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						gcgattttgggaatgtagttc	0													44	79					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82546172	82546172	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:82546172G>A	uc003uhx.2	-	7	11419	c.11130C>T	c.(11128-11130)ACC>ACT	p.T3710T	PCLO_uc003uhv.2_Silent_p.T3710T|PCLO_uc010lec.2_Silent_p.T675T	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3641					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGGATGTCATGGTTTGAGAAC	0.333													39	67					0	0	0.009718	0	0
SEMA3A	10371	broad.mit.edu	37	7	83689791	83689791	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:83689791G>A	uc003uhz.2	-	5	852	c.537C>T	c.(535-537)TCC>TCT	p.S179S		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	179	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						CTATTAAAAGGGATGCTGTCA	0.348													60	92					0	0	0.014410	0	0
SAMD9	54809	broad.mit.edu	37	7	92734749	92734749	+	Missense_Mutation	SNP	C	G	G	rs148603551		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:92734749C>G	uc003umf.2	-	3	918	c.662G>C	c.(661-663)CGA>CCA	p.R221P	SAMD9_uc003umg.2_Missense_Mutation_p.R221P	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	221						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TGAAGCAAATCGGAAAACCTC	0.398													11	105					0	0	0.010729	0	0
SMURF1	57154	broad.mit.edu	37	7	98634711	98634711	+	Silent	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:98634711A>G	uc003upu.1	-	16	2186	c.1866T>C	c.(1864-1866)CCT>CCC	p.P622P	SMURF1_uc003upv.1_Silent_p.P596P|SMURF1_uc003upt.2_Silent_p.P596P	NM_020429	NP_065162	Q9HCE7	SMUF1_HUMAN	Smad ubiquitination regulatory factor 1 isoform	622	HECT.				BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|lung(1)	4	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			TCTGGTCAAAAGGCTTCAGCA	0.532											OREG0018188	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	112					0	0	0.009096	0	0
CYP3A4	1576	broad.mit.edu	37	7	99367788	99367788	+	Missense_Mutation	SNP	C	T	T	rs72552799		TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:99367788C>T	uc003urv.1	-	5	493	c.389G>A	c.(388-390)CGA>CAA	p.R130Q	CYP3A4_uc003urw.1_Missense_Mutation_p.R130Q|CYP3A4_uc011kiz.1_Intron|CYP3A4_uc011kja.1_Missense_Mutation_p.R81Q|CYP3A4_uc011kjb.1_Intron	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	130			R -> Q (in allele CYP3A4*8).		alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	CAGCAATGATCGTAATCTCTT	0.388													7	52					0	0	0.004482	0	0
GIGYF1	64599	broad.mit.edu	37	7	100281648	100281648	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:100281648G>A	uc003uwg.1	-	15	2872	c.1863C>T	c.(1861-1863)CCC>CCT	p.P621P		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	621										large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CGCACCTGGGGGGTTTGAGCG	0.652													12	17					0	0	0.016723	0	0
TMEM168	64418	broad.mit.edu	37	7	112424596	112424596	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:112424596G>A	uc003vgn.2	-	2	677	c.285C>T	c.(283-285)TCC>TCT	p.S95S	TMEM168_uc010lju.2_Silent_p.S95S|TMEM168_uc011kmr.1_Intron	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	95	Helical; (Potential).					integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						ACCAAAGATTGGAGAGACTTA	0.318													19	39					0	0	0.012319	0	0
C7orf58	79974	broad.mit.edu	37	7	120907270	120907270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:120907270G>A	uc003vjq.3	+	21	3082	c.2635G>A	c.(2635-2637)GAA>AAA	p.E879K		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	879						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CTCATTCAGGGAAAATTTACT	0.184													8	33					0	0	0.004482	0	0
PLXNA4	91584	broad.mit.edu	37	7	131913112	131913112	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:131913112T>A	uc003vra.3	-	6	1950	c.1721A>T	c.(1720-1722)AAC>ATC	p.N574I		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	574	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TACCAGCACGTTGTACTGAGA	0.592													4	35					0	0	0.014758	0	0
PLXNA4	91584	broad.mit.edu	37	7	131913184	131913184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:131913184C>T	uc003vra.3	-	6	1878	c.1649G>A	c.(1648-1650)AGG>AAG	p.R550K		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	550	PSI 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CGAGGCAAACCTGCGGGGCTC	0.607													8	34					0	0	0.003080	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				15	47					0	0	0.004007	0	0
OR9A4	130075	broad.mit.edu	37	7	141619403	141619403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:141619403C>T	uc003vwu.1	+	1	728	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					ACTTGTGCCTCCCACTTCACC	0.502													20	59					0	0	0.012319	0	0
MGAM	8972	broad.mit.edu	37	7	141736006	141736006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:141736006C>T	uc003vwy.2	+	17	2051	c.1997C>T	c.(1996-1998)CCT>CTT	p.P666L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	666	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTGGACACCCCTGAGGAGCTC	0.498													3	17					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	7	142499826	142499826	+	RNA	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:142499826C>T	uc003wbe.3	+	4		c.496C>T			uc003wbf.3_RNA|uc003wbh.3_Silent_p.L194L|uc003wbi.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T cell receptor V beta14-D-J, partial cds.																		CCACCATCCTCTATGAGATCT	0.567													20	37					0	0	0.012319	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175685	143175685	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:143175685C>T	uc003wdc.1	+	1	720	c.720C>T	c.(718-720)CTC>CTT	p.L240L	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	240	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					TCTCCTTCCTCATTCTTTATG	0.512													18	54					0	0	0.006122	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146997268	146997268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:146997268C>T	uc003weu.1	+	9	1900	c.1384C>T	c.(1384-1386)CGC>TGC	p.R462C		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	462	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GCACGAGGTTCGCTTCCTAGC	0.403										HNSCC(39;0.1)			27	55					0	0	0.010818	0	0
LRRC61	65999	broad.mit.edu	37	7	150034155	150034155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr7:150034155G>A	uc003wgv.2	+	3	879	c.205G>A	c.(205-207)GGC>AGC	p.G69S	LRRC61_uc003wgx.2_Missense_Mutation_p.G69S|LRRC61_uc003wgw.2_Missense_Mutation_p.G69S|LRRC61_uc003wgz.3_Missense_Mutation_p.G69S	NM_023942	NP_076431	Q9BV99	LRC61_HUMAN	leucine rich repeat containing 61	69	LRR 2.										0			OV - Ovarian serous cystadenocarcinoma(82;0.011)			CACCCACCTGGGCCCGCTGGC	0.642													7	67					0	0	0.004482	0	0
CSMD1	64478	broad.mit.edu	37	8	3565960	3565960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:3565960C>T	uc011kwk.1	-	7	1375	c.985G>A	c.(985-987)GAT>AAT	p.D329N		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	329	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGGCTTCCATCCTTGCTGGGC	0.453													11	40					0	0	0.013537	0	0
CDCA2	157313	broad.mit.edu	37	8	25340941	25340941	+	Silent	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:25340941T>C	uc003xep.1	+	9	1538	c.1059T>C	c.(1057-1059)GAT>GAC	p.D353D	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_Silent_p.D353D|CDCA2_uc003xeq.1_Silent_p.D338D|CDCA2_uc003xer.1_Silent_p.D16D	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	353					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		TCTATGATGATGATGGGACTC	0.328													22	16					0	0	0.016522	0	0
CHRNA2	1135	broad.mit.edu	37	8	27321275	27321275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:27321275C>T	uc010lur.2	-	6	1294	c.685G>A	c.(685-687)GGC>AGC	p.G229S	CHRNA2_uc011lal.1_Missense_Mutation_p.G214S|CHRNA2_uc010lus.2_Missense_Mutation_p.G31S	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	229	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	GCCCACTCGCCGCTCTCCCAG	0.572													6	45					0	0	0.001984	0	0
ST18	9705	broad.mit.edu	37	8	53079421	53079421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:53079421G>A	uc003xqz.2	-	6	1351	c.1195C>T	c.(1195-1197)CCC>TCC	p.P399S	ST18_uc011ldq.1_Missense_Mutation_p.P46S|ST18_uc011ldr.1_Missense_Mutation_p.P364S|ST18_uc011lds.1_Missense_Mutation_p.P304S|ST18_uc003xra.2_Missense_Mutation_p.P399S|ST18_uc003xrb.2_Missense_Mutation_p.P399S	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	399						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CTTTCCAGGGGAACCCGCACT	0.547													19	75					0	0	0.014323	0	0
RP1	6101	broad.mit.edu	37	8	55533884	55533884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:55533884G>A	uc003xsd.1	+	2	506	c.358G>A	c.(358-360)GCC>ACC	p.A120T	RP1_uc011ldy.1_Missense_Mutation_p.A120T	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	120					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CCTGGACAAAGCCCGTCGGCG	0.716													19	48					0	0	0.012319	0	0
RP1	6101	broad.mit.edu	37	8	55539179	55539179	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:55539179C>T	uc003xsd.1	+	4	2885	c.2737C>T	c.(2737-2739)CAA>TAA	p.Q913*	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	913					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCATTCAATTCAAAATTATAT	0.333													13	37					0	0	0.003163	0	0
PREX2	80243	broad.mit.edu	37	8	69058471	69058471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:69058471G>A	uc003xxv.1	+	34	4142	c.4115G>A	c.(4114-4116)GGA>GAA	p.G1372E		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1372					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CAAGCAGAAGGAAGTCGGCAA	0.328													9	18					0	0	0.004482	0	0
IL7	3574	broad.mit.edu	37	8	79710399	79710399	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:79710399G>A	uc003ybg.2	-	2	656	c.55C>T	c.(55-57)CTG>TTG	p.L19L	IL7_uc003ybe.2_5'UTR|IL7_uc011lfm.1_RNA|IL7_uc003ybh.2_RNA|IL7_uc003ybi.3_RNA	NM_000880	NP_000871	P13232	IL7_HUMAN	interleukin 7 precursor	19					bone resorption|cell-cell signaling|humoral immune response|organ morphogenesis|positive regulation of B cell proliferation|positive regulation of T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-7 receptor binding				0						ACTGGCAACAGAACAAGGATC	0.343													10	31					0	0	0.006214	0	0
MMP16	4325	broad.mit.edu	37	8	89128865	89128865	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:89128865C>T	uc003yeb.3	-	6	1236	c.954G>A	c.(952-954)AGG>AGA	p.R318R	MMP16_uc003yec.2_Silent_p.R318R	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	318	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						TGTCATTTTTCCTTGGGTCAG	0.527													37	101					0	0	0.006230	0	0
RIMS2	9699	broad.mit.edu	37	8	104922429	104922429	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:104922429G>A	uc003yls.2	+	3	1267	c.1026G>A	c.(1024-1026)TTG>TTA	p.L342L	RIMS2_uc003ylp.2_Silent_p.L564L|RIMS2_uc003ylw.2_Silent_p.L372L|RIMS2_uc003ylq.2_Silent_p.L372L|RIMS2_uc003ylr.2_Intron|RIMS2_uc003ylt.2_5'Flank	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CAATGTCTTTGGTGAGACATG	0.368										HNSCC(12;0.0054)			23	58					0	0	0.014323	0	0
LY6H	4062	broad.mit.edu	37	8	144239719	144239719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr8:144239719G>A	uc011lka.1	-	4	537	c.371C>T	c.(370-372)GCC>GTC	p.A124V	LY6H_uc011lkb.1_Missense_Mutation_p.A145V|LY6H_uc003yxt.2_Missense_Mutation_p.A162V|LY6H_uc011lkc.1_Missense_Mutation_p.A145V	NM_002347	NP_002338	O94772	LY6H_HUMAN	lymphocyte antigen 6 complex, locus H isoform a	124					nervous system development|organ morphogenesis	anchored to membrane|plasma membrane					0	all_cancers(97;6.49e-11)|all_epithelial(106;2.77e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GAGCCCCCCGGCCAGGGCCCA	0.652													12	20					0	0	0.013537	0	0
IFNW1	3467	broad.mit.edu	37	9	21141108	21141108	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr9:21141108C>T	uc003zol.1	-	1	1037	c.462G>A	c.(460-462)CTG>CTA	p.L154L		NM_002177	NP_002168	P05000	IFNW1_HUMAN	interferon, omega 1 precursor	154					cell cycle arrest|defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0				GBM - Glioblastoma multiforme(5;2.35e-185)|Lung(24;2.24e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		TCTTCTCTTTCAGGTAGACAC	0.473													11	25					0	0	0.008291	0	0
IFNA16	3449	broad.mit.edu	37	9	21217122	21217122	+	Silent	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr9:21217122G>A	uc003zor.1	-	1	189	c.183C>T	c.(181-183)TTC>TTT	p.F61F	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	61					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		CCTCCTGGGGGAATCCGAAAT	0.498													29	42					0	0	0.013726	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88307670	88307670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr9:88307670C>T	uc011ltd.1	-	2	124	c.91G>A	c.(91-93)GAG>AAG	p.E31K	AGTPBP1_uc010mqc.2_Missense_Mutation_p.E31K|AGTPBP1_uc011lte.1_Missense_Mutation_p.E83K	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	31					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						TCTGAAGGCTCAGCATTGATC	0.393													12	34					0	0	0.010729	0	0
PTCH1	5727	broad.mit.edu	37	9	98229536	98229536	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr9:98229536G>C	uc004avk.3	-	15	2610	c.2422C>G	c.(2422-2424)CAG>GAG	p.Q808E	PTCH1_uc010mro.2_Missense_Mutation_p.Q657E|PTCH1_uc010mrp.2_Missense_Mutation_p.Q657E|PTCH1_uc010mrq.2_Missense_Mutation_p.Q657E|PTCH1_uc004avl.3_Missense_Mutation_p.Q657E|PTCH1_uc010mrr.2_Missense_Mutation_p.Q742E|PTCH1_uc004avm.3_Missense_Mutation_p.Q807E	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	808	Extracellular (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.Q808*(1)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				TCTGCTTTCTGGGTGACTATA	0.408									Basal_Cell_Nevus_syndrome				3	66					0	0	0.004672	0	0
CACNA1B	774	broad.mit.edu	37	9	140777324	140777324	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr9:140777324C>T	uc004cog.2	+	3	664	c.519C>T	c.(517-519)GTC>GTT	p.V173V	uc004cof.1_RNA	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	173	Helical; Name=S3 of repeat I; (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	ACTTCGTGGTCGTCCTCACAG	0.607													35	120					0	0	0.021022	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071078	141071078	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr9:141071078A>G	uc004com.2	+	4	742	c.481A>G	c.(481-483)ATG>GTG	p.M161V	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GTCTGCTACCATGAGTGGGGT	0.552													5	26					0	0	0.001168	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811688	5811688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:5811688G>A	uc010ndh.2	-	6	2122	c.1621C>T	c.(1621-1623)CCT>TCT	p.P541S	NLGN4X_uc004crp.2_Missense_Mutation_p.P561S|NLGN4X_uc004crq.2_Missense_Mutation_p.P541S|NLGN4X_uc010ndi.2_Missense_Mutation_p.P578S|NLGN4X_uc004crr.2_Missense_Mutation_p.P541S|NLGN4X_uc010ndj.2_Missense_Mutation_p.P541S	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	541	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GTATCCTGAGGAACTGGTTGA	0.403													25	30					0	0	0.005443	0	0
NHS	4810	broad.mit.edu	37	X	17710501	17710501	+	Silent	SNP	C	T	T	rs143119491	byFrequency	TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:17710501C>T	uc004cxx.2	+	3	1103	c.765C>T	c.(763-765)CCC>CCT	p.P255P	NHS_uc011mix.1_Silent_p.P255P|NHS_uc004cxy.2_Silent_p.P78P|NHS_uc004cxz.2_Silent_p.P78P|NHS_uc004cya.2_5'UTR	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	255						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					CAGCTGCCCCCCTTTCCATTG	0.517													15	37					0	0	0.004007	0	0
FAM47C	442444	broad.mit.edu	37	X	37027900	37027900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:37027900C>T	uc004ddl.1	+	1	1431	c.1417C>T	c.(1417-1419)CAT>TAT	p.H473Y		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	473										ovary(3)	3						TGGAGTGTCCCATCTCTGCCC	0.637													13	15					0	0	0.016723	0	0
DGKK	139189	broad.mit.edu	37	X	50129463	50129463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:50129463G>A	uc010njr.1	-	15	2300	c.2240C>T	c.(2239-2241)CCC>CTC	p.P747L		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	747					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					AGGAATGAAGGGCTTCCTATC	0.473													20	28					0	0	0.007413	0	0
SHROOM4	57477	broad.mit.edu	37	X	50351041	50351041	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:50351041G>A	uc004dpe.2	-	6	3127	c.3101C>T	c.(3100-3102)TCA>TTA	p.S1034L	SHROOM4_uc004dpd.3_RNA	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	1034					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					AGTTTCCTCTGATTTTTTCAA	0.522													13	11					0	0	0.013537	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83400549	83400549	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:83400549C>T	uc004eej.1	-	6	515	c.438G>A	c.(436-438)GGG>GGA	p.G146G	RPS6KA6_uc011mqt.1_Silent_p.G146G|RPS6KA6_uc011mqu.1_Silent_p.G43G|RPS6KA6_uc010nmo.1_RNA	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	146	Protein kinase 1.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						AGTACAGTTTCCCTTCAGTCT	0.289													4	13					0	0	0.014758	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450353	105450353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:105450353C>T	uc004emf.1	+	4	1577	c.928C>T	c.(928-930)CCT>TCT	p.P310S	MUM1L1_uc004emg.1_Missense_Mutation_p.P310S	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	310										ovary(2)|pancreas(1)|skin(1)	4						TGCAGCATGCCCTGGGAGTTG	0.458													7	6					0	0	0.003080	0	0
COL4A6	1288	broad.mit.edu	37	X	107431209	107431209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:107431209C>T	uc004enw.3	-	22	1742	c.1639G>A	c.(1639-1641)GAA>AAA	p.E547K	COL4A6_uc004env.3_Missense_Mutation_p.E546K|COL4A6_uc011msn.1_Missense_Mutation_p.E546K|COL4A6_uc010npk.2_Missense_Mutation_p.E546K	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	547	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding	p.P547Q(1)		ovary(6)|urinary_tract(1)|large_intestine(1)	8						AGAATTGGTTCCCCCTTCTTT	0.512									Alport_syndrome_with_Diffuse_Leiomyomatosis				22	38					0	0	0.018920	0	0
ODZ1	10178	broad.mit.edu	37	X	123870877	123870877	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:123870877T>C	uc004euj.2	-	4	770	c.706A>G	c.(706-708)ACC>GCC	p.T236A	ODZ1_uc011muj.1_Missense_Mutation_p.T236A|ODZ1_uc010nqy.2_Missense_Mutation_p.T236A	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	236	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TGCGTGCTGGTTGGGGGAGCT	0.562													12	92					0	0	0.016723	0	0
IGSF1	3547	broad.mit.edu	37	X	130416470	130416470	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:130416470C>T	uc004ewd.2	-	7	1432	c.1194G>A	c.(1192-1194)TGG>TGA	p.W398*	IGSF1_uc004ewe.3_Nonsense_Mutation_p.W387*|IGSF1_uc004ewf.2_Nonsense_Mutation_p.W378*	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	398	Ig-like C2-type 4.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGGAGGTCTTCCAGGTGAGAA	0.408													23	29					0	0	0.018920	0	0
USP26	83844	broad.mit.edu	37	X	132162238	132162238	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:132162238A>C	uc010nrm.1	-	6	481	c.11T>G	c.(10-12)CTA>CGA	p.L4R	USP26_uc011mvf.1_Missense_Mutation_p.L4R	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	4					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					ACGTAGGAATAGGGCAGCCAT	0.363													11	33					0	0	0.008291	0	0
SPANXN3	139067	broad.mit.edu	37	X	142596750	142596750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:142596750C>T	uc004fbw.2	-	2	408	c.320G>A	c.(319-321)GGA>GAA	p.G107E		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	107										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTTTGAAGGTCCTTCACATGG	0.473													30	52					0	0	0.008361	0	0
UBE2NL	389898	broad.mit.edu	37	X	142967308	142967308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:142967308C>T	uc004fca.2	+	1	136	c.106C>T	c.(106-108)CAT>TAT	p.H36Y		NM_001012989	NP_001013007	Q5JXB2	UE2NL_HUMAN	ubiquitin-conjugating enzyme E2N-like	36							acid-amino acid ligase activity				0	Acute lymphoblastic leukemia(192;6.56e-05)					CCGTTATTTTCATGTGGTCAT	0.498													28	45					0	0	0.006320	0	0
MAGEA5	4104	broad.mit.edu	37	X	151283910	151283910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:151283910C>T	uc004ffj.2	-	3	308	c.103G>A	c.(103-105)GAG>AAG	p.E35K		NM_021049	NP_066387	P43359	MAGA5_HUMAN	melanoma antigen family A, 5	35	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					GCCTCCTGCTCCTCAGTAGTG	0.632													17	24					0	0	0.004990	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303172	151303172	+	Silent	SNP	C	T	T			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:151303172C>T	uc004ffk.2	-	5	1329	c.921G>A	c.(919-921)AGG>AGA	p.R307R	MAGEA10_uc004ffl.2_Silent_p.R307R	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	307	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					GACTCATCTTCCTAATTTCAG	0.498													40	59					0	0	0.007835	0	0
ZNF185	7739	broad.mit.edu	37	X	152100264	152100265	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:152100264_152100265CC>TT	uc010ntv.1	+	13	1000_1001	c.963_964CC>TT	c.(961-966)CTCCAG>CTTTAG	p.Q322*	ZNF185_uc011myg.1_Nonsense_Mutation_p.Q322*|ZNF185_uc011myh.1_Nonsense_Mutation_p.Q293*|ZNF185_uc011myi.1_Nonsense_Mutation_p.Q293*|ZNF185_uc011myj.1_Nonsense_Mutation_p.Q263*|ZNF185_uc011myk.1_Nonsense_Mutation_p.Q323*|ZNF185_uc004fgw.3_Nonsense_Mutation_p.Q101*|ZNF185_uc004fgu.2_Intron|ZNF185_uc004fgv.2_Nonsense_Mutation_p.Q19*	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	322						cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGAGAGCTCCAGAGGGACTT	0.55													7	12					0	0	0.004672	0	0
G6PD	2539	broad.mit.edu	37	X	153760655	153760655	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chrX:153760655T>A	uc004fly.1	-	11	1423	c.1310A>T	c.(1309-1311)TAC>TTC	p.Y437F	G6PD_uc004flx.1_Missense_Mutation_p.Y467F	NM_001042351	NP_001035810	P11413	G6PD_HUMAN	glucose-6-phosphate dehydrogenase isoform b	437					cellular response to oxidative stress|cholesterol biosynthetic process|cytokine production|erythrocyte maturation|glucose 6-phosphate metabolic process|glutathione metabolic process|negative regulation of protein glutathionylation|pentose-phosphate shunt, oxidative branch|ribose phosphate biosynthetic process	centrosome|cytosol|internal side of plasma membrane|intracellular membrane-bounded organelle	glucose binding|glucose-6-phosphate dehydrogenase activity|NADP binding|protein homodimerization activity			ovary(4)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GAGGCGCTCGTAGGCGTCAGG	0.662													12	14					0	0	0.010729	0	0
PTEN	5728	broad.mit.edu	37	10	89720711	89720712	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr10:89720711_89720712insA	uc001kfb.2	+	9	1893_1894	c.862_863insA	c.(862-864)GAAfs	p.E288fs		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	288	C2 tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.E288fs*3(6)|p.R55fs*1(4)|p.?(2)|p.N212fs*1(2)|p.Y27fs*1(2)|p.E288*(2)|p.G165_*404del(1)|p.S287fs*1(1)|p.G165_K342del(1)|p.E288fs*8(1)|p.S287fs*8(1)|p.W274_F341del(1)|p.E288K(1)|p.E288fs*9(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		GGAAACCTCAGAAAAAGTAGAA	0.297		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			12	30	---	---	---	---					
AHNAK	79026	broad.mit.edu	37	11	62293194	62293205	+	In_Frame_Del	DEL	TTTTCATCTTGG	-	-			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr11:62293194_62293205delTTTTCATCTTGG	uc001ntl.2	-	5	8984_8995	c.8684_8695delCCAAGATGAAAA	c.(8683-8697)CCCAAGATGAAAATG>CTG	p.2895_2899PKMKM>L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2895_2899					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				AACTTGGGCATTTTCATCTTGGGCATCTTCAG	0.524													20	156	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106774086	106774087	+	Splice_Site	INS	-	AGTAATACACGGCA	AGTAATACACGGCA			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr14:106774086_106774087insAGTAATACACGGCA	uc010tyt.1	-	430		c.15674_splice	c.e430+1							Parts of antibodies, mostly variable regions.												0						GCCTCTTGCACGTGTCCTCAGC	0.550													3	4	---	---	---	---					
WRAP53	55135	broad.mit.edu	37	17	7606722	7606722	+	Frame_Shift_Del	DEL	C	-	-	rs7640	byFrequency	TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr17:7606722delC	uc010vuh.1	+	11	1720	c.1565delC	c.(1564-1566)GCGfs	p.A522fs	WRAP53_uc010vui.1_Frame_Shift_Del_p.A522fs|WRAP53_uc002gip.2_Frame_Shift_Del_p.A522fs|WRAP53_uc002gir.2_Frame_Shift_Del_p.A522fs|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Frame_Shift_Del_p.A489fs|EFNB3_uc002gis.2_5'Flank	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	522					positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						TGTGGGGGGGCGCCAGACTCC	0.582													7	86	---	---	---	---					
MLL4	9757	broad.mit.edu	37	19	36215596	36215596	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:36215596delT	uc010eei.2	+	10	3393	c.3393delT	c.(3391-3393)CCTfs	p.P1131fs		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1131					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCCTGCAGCCTGTGTTGCAGC	0.637													2	4	---	---	---	---					
SIGLEC6	946	broad.mit.edu	37	19	52034107	52034107	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr19:52034107delG	uc002pwy.2	-	3	696	c.534delC	c.(532-534)CCCfs	p.P178fs	SIGLEC6_uc002pwz.2_Frame_Shift_Del_p.P178fs|SIGLEC6_uc002pxa.2_Frame_Shift_Del_p.P178fs|SIGLEC6_uc010ydb.1_Frame_Shift_Del_p.P131fs|SIGLEC6_uc010ydc.1_Frame_Shift_Del_p.P167fs|SIGLEC6_uc010eoz.1_Frame_Shift_Del_p.P156fs|SIGLEC6_uc010epb.1_Frame_Shift_Del_p.P131fs|SIGLEC6_uc010epa.1_Frame_Shift_Del_p.P167fs	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	178	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		AGGAGAAGATGGGGGGCGTCC	0.662													15	56	---	---	---	---					
INPP4A	3631	broad.mit.edu	37	2	99189310	99189310	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr2:99189310delC	uc002syy.2	+	24	2959	c.2566delC	c.(2566-2568)CCAfs	p.P856fs	INPP4A_uc010yvj.1_Frame_Shift_Del_p.P817fs|INPP4A_uc010yvk.1_Frame_Shift_Del_p.P817fs|INPP4A_uc002syx.2_Frame_Shift_Del_p.P851fs|INPP4A_uc010fik.2_Frame_Shift_Del_p.P185fs	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	856					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						GACGTGCCTGCCAGAGCTGCT	0.592													2	4	---	---	---	---					
MTTP	4547	broad.mit.edu	37	4	100516025	100516025	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr4:100516025delT	uc003hvc.3	+	8	1150	c.894delT	c.(892-894)TGTfs	p.C298fs	MTTP_uc011cej.1_Frame_Shift_Del_p.C325fs	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	298	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	AGAGCCACTGTAAAGGATGTC	0.433													29	64	---	---	---	---					
UBQLN1	29979	broad.mit.edu	37	9	86322554	86322554	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29P-06A-11D-A197-08	TCGA-EE-A29P-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	98b44a0e-5965-447c-bf28-ae643c4f476e	654f57e9-da2d-4b7c-9506-82e0be22cec2	g.chr9:86322554delT	uc004amv.2	-	1	615	c.41delA	c.(40-42)CAGfs	p.Q14fs	UBQLN1_uc004amw.2_Frame_Shift_Del_p.Q14fs|uc004amx.2_5'Flank	NM_013438	NP_038466	Q9UMX0	UBQL1_HUMAN	ubiquilin 1 isoform 1	14					apoptosis|regulation of protein ubiquitination|response to hypoxia	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm|proteasome complex	kinase binding				0						GGCGCTATCCTGGGAGCCCGG	0.692													2	4	---	---	---	---					
