Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TTLL10	254173	broad.mit.edu	37	1	1119384	1119384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:1119384G>A	uc001acy.2	+	12	1324	c.1173G>A	c.(1171-1173)ATG>ATA	p.M391I	TTLL10_uc010nyg.1_Missense_Mutation_p.M391I|TTLL10_uc001acz.1_Missense_Mutation_p.M318I	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	391	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CACCCTACATGATCTTCTTTG	0.592													93	184					0	0	0.014410	0	0
LRRC47	57470	broad.mit.edu	37	1	3699293	3699293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:3699293G>A	uc001akx.1	-	5	1373	c.1345C>T	c.(1345-1347)CCG>TCG	p.P449S		NM_020710	NP_065761	Q8N1G4	LRC47_HUMAN	leucine rich repeat containing 47	449					translation		phenylalanine-tRNA ligase activity|RNA binding			large_intestine(1)|ovary(1)	2	all_cancers(77;0.0375)|Ovarian(185;0.0634)|all_lung(157;0.208)|Lung NSC(156;0.21)	all_epithelial(116;1.34e-16)|all_lung(118;2.53e-06)|Lung NSC(185;0.00028)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.0743)|Ovarian(437;0.127)		Epithelial(90;5.49e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.43e-22)|GBM - Glioblastoma multiforme(42;3.69e-16)|Colorectal(212;1.21e-05)|COAD - Colon adenocarcinoma(227;5.87e-05)|Kidney(185;0.000367)|BRCA - Breast invasive adenocarcinoma(365;0.000704)|KIRC - Kidney renal clear cell carcinoma(229;0.00567)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.124)		ACAAGACACGGGTAATTTTCA	0.388													28	74					0	0	0.007291	0	0
PTCHD2	57540	broad.mit.edu	37	1	11576105	11576105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:11576105C>T	uc001ash.3	+	6	1774	c.1636C>T	c.(1636-1638)CAC>TAC	p.H546Y	PTCHD2_uc001asi.1_Missense_Mutation_p.H546Y	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	546	SSD.|Cytoplasmic (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CCAGGCCACCCACCTGGAAGA	0.592													14	27					0	0	0.016723	0	0
MFN2	9927	broad.mit.edu	37	1	12066609	12066609	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:12066609C>T	uc001atn.3	+	16	2184	c.1731C>T	c.(1729-1731)ATC>ATT	p.I577I	MFN2_uc009vni.2_Silent_p.I577I	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	577	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		AGCGTCCCATCCCTCTGACGC	0.597													11	51					0	0	0.013537	0	0
VPS13D	55187	broad.mit.edu	37	1	12337566	12337566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:12337566G>A	uc001atv.2	+	19	4062	c.3921G>A	c.(3919-3921)ATG>ATA	p.M1307I	VPS13D_uc001atw.2_Missense_Mutation_p.M1307I|VPS13D_uc001atx.2_Missense_Mutation_p.M495I	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1307					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CGTTATCCATGGATGAACTGG	0.418													28	54					0	0	0.007291	0	0
VPS13D	55187	broad.mit.edu	37	1	12368579	12368579	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:12368579G>A	uc001atv.2	+	27	6672	c.6531G>A	c.(6529-6531)AAG>AAA	p.K2177K	VPS13D_uc001atw.2_Silent_p.K2177K|VPS13D_uc001atx.2_Silent_p.K1365K|VPS13D_uc001aty.1_5'Flank	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2177					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AATACTCGAAGGCACCAGAGG	0.502													48	130					0	0	0.014410	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12837257	12837257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:12837257G>A	uc001aui.2	+	3	994	c.967G>A	c.(967-969)GAG>AAG	p.E323K		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	323	LRR 1.									ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCAGCTAAAAGAGCTAGACCT	0.572													56	110					0	0	0.014410	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919569	12919569	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:12919569G>A	uc001aum.1	+	3	396	c.309G>A	c.(307-309)CTG>CTA	p.L103L		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	103											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTCAAGTGCTGGATTTGCGGG	0.517													101	211					0	0	0.014410	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001293	13001293	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:13001293C>T	uc001auq.2	-	3	476	c.390G>A	c.(388-390)AGG>AGA	p.R130R	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	130											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTGTTTTGTTCCTCTTGGCAT	0.498													99	694					0	0	0.014410	0	0
CLCNKA	1187	broad.mit.edu	37	1	16355734	16355734	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:16355734G>A	uc001axu.2	+	12	1247	c.1167G>A	c.(1165-1167)TGG>TGA	p.W389*	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Nonsense_Mutation_p.W389*|CLCNKA_uc010obw.1_Nonsense_Mutation_p.W346*|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_Nonsense_Mutation_p.W36*|CLCNKA_uc010oby.1_Missense_Mutation_p.G119R	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	389					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	ACCTTTGGTGGGAATGGTACC	0.627													30	75					0	0	0.008361	0	0
SPATA21	374955	broad.mit.edu	37	1	16736178	16736178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:16736178C>T	uc001ayn.2	-	6	988	c.505G>A	c.(505-507)GGC>AGC	p.G169S	SPATA21_uc001ayl.1_RNA|SPATA21_uc010occ.1_Missense_Mutation_p.G146S	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21	169	Pro-rich.						calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		AGGGCAGGGCCCAGCAGGACA	0.697													11	18					0	0	0.016723	0	0
NBPF1	55672	broad.mit.edu	37	1	16893773	16893773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:16893773G>A	uc009vos.1	-	26	3853	c.2965C>T	c.(2965-2967)CCT>TCT	p.P989S	NBPF1_uc009vot.1_Missense_Mutation_p.P372S|NBPF1_uc001ayz.1_Missense_Mutation_p.P372S|NBPF1_uc010oce.1_Missense_Mutation_p.P643S	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	989	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TAACCTGAAGGAGTTGAATAA	0.483													18	806					0	0	0.020292	0	0
UBR4	23352	broad.mit.edu	37	1	19439325	19439325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:19439325C>T	uc001bbi.2	-	78	11498	c.11494G>A	c.(11494-11496)GAC>AAC	p.D3832N	UBR4_uc001bbj.1_3'UTR	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3832					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TGCTGTAGGTCATATTCCAAC	0.463													93	211					0	0	0.014410	0	0
CSMD2	114784	broad.mit.edu	37	1	34208985	34208985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:34208985C>T	uc001bxn.1	-	14	1978	c.1949G>A	c.(1948-1950)GGA>GAA	p.G650E	CSMD2_uc001bxm.1_Missense_Mutation_p.G690E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	650	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AAGCTGGTTTCCTGAGAAGGT	0.587													31	43					0	0	0.009535	0	0
GJB4	127534	broad.mit.edu	37	1	35227260	35227260	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:35227260C>T	uc001bxv.1	+	2	775	c.405C>T	c.(403-405)CTC>CTT	p.L135L	GJB4_uc001bxw.3_Silent_p.L135L	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	135	Helical; (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				TGCTGAGCCTCATCTTCAAGG	0.602													18	34					0	0	0.008871	0	0
INPP5B	3633	broad.mit.edu	37	1	38343860	38343860	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:38343860C>T	uc001ccg.1	-	16	1771	c.1677G>A	c.(1675-1677)GGG>GGA	p.G559G	INPP5B_uc009vvk.1_Silent_p.G500G|INPP5B_uc001ccf.1_Silent_p.G395G|INPP5B_uc010oij.1_RNA	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	639					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				TGCCACCTACCCCGATGTCAA	0.483													16	67					0	0	0.003163	0	0
NT5C1A	84618	broad.mit.edu	37	1	40126934	40126934	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:40126934C>T	uc001cdq.1	-	5	558	c.558G>A	c.(556-558)GGG>GGA	p.G186G		NM_032526	NP_115915	Q9BXI3	5NT1A_HUMAN	5'-nucleotidase, cytosolic IA	186					purine base metabolic process|purine nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CAGCTGCGATCCCTAGGCAGA	0.607													9	25					0	0	0.006214	0	0
HIVEP3	59269	broad.mit.edu	37	1	42048421	42048421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:42048421G>A	uc001cgz.3	-	4	3261	c.2048C>T	c.(2047-2049)CCA>CTA	p.P683L	HIVEP3_uc001cha.3_Missense_Mutation_p.P683L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	683	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TTCAGCTTCTGGAGATGTGTG	0.498													38	81					0	0	0.008740	0	0
PTPRF	5792	broad.mit.edu	37	1	44056778	44056778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:44056778C>T	uc001cjr.2	+	9	1425	c.1085C>T	c.(1084-1086)CCC>CTC	p.P362L	PTPRF_uc001cjs.2_Missense_Mutation_p.P362L|PTPRF_uc001cju.2_5'UTR|PTPRF_uc009vwt.2_5'UTR|PTPRF_uc001cjv.2_5'UTR	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	362	Extracellular (Potential).|Fibronectin type-III 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ACGGAGGGCCCCTTTCAGGAG	0.622													35	69					0	0	0.005524	0	0
TMEM53	79639	broad.mit.edu	37	1	45120814	45120814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:45120814G>A	uc001cmc.2	-	3	287	c.251C>T	c.(250-252)CCT>CTT	p.P84L	TMEM53_uc001cmb.1_Intron|TMEM53_uc001cmd.2_Missense_Mutation_p.P11L|TMEM53_uc009vxh.1_Intron|TMEM53_uc010ola.1_Intron	NM_024587	NP_078863	Q6P2H8	TMM53_HUMAN	transmembrane protein 53	84						integral to membrane				ovary(2)	2	Acute lymphoblastic leukemia(166;0.155)					ACGAAGTGAAGGGATACCCAG	0.552											OREG0013446	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	50					0	0	0.008871	0	0
PRKAA2	5563	broad.mit.edu	37	1	57161734	57161734	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:57161734C>T	uc001cyk.3	+	6	761	c.690C>T	c.(688-690)GTC>GTT	p.V230V		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	230	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						GAGGGGGTGTCTTTTATATCC	0.448													86	197					0	0	0.014410	0	0
C1orf168	199920	broad.mit.edu	37	1	57202799	57202799	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:57202799A>T	uc001cym.3	-	15	2160	c.1754T>A	c.(1753-1755)ATT>AAT	p.I585N	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	585										ovary(3)|skin(2)	5						ATCATAAATAATAACTTCCTG	0.333													12	42					0	0	0.020292	0	0
C1orf168	199920	broad.mit.edu	37	1	57257889	57257889	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:57257889G>A	uc001cym.3	-	2	1003	c.597C>T	c.(595-597)CAC>CAT	p.H199H	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.H199H	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	199										ovary(3)|skin(2)	5						GGGCCACCACGTGCTTCTGGG	0.478													42	102					0	0	0.011902	0	0
C1orf168	199920	broad.mit.edu	37	1	57258104	57258104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:57258104C>T	uc001cym.3	-	2	788	c.382G>A	c.(382-384)GAA>AAA	p.E128K	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.E128K	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	128										ovary(3)|skin(2)	5						ATTACTTTTTCCTTAGTGATT	0.428													53	94					0	0	0.014410	0	0
C8A	731	broad.mit.edu	37	1	57333298	57333298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:57333298G>A	uc001cyo.2	+	2	226	c.94G>A	c.(94-96)GCT>ACT	p.A32T		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	32					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						AAGACGGGCAGCTACACCCGC	0.463													7	25					0	0	0.001984	0	0
NFIA	4774	broad.mit.edu	37	1	61554224	61554224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:61554224G>A	uc001czw.2	+	2	915	c.431G>A	c.(430-432)AGT>AAT	p.S144N	NFIA_uc001czy.2_Missense_Mutation_p.S136N|NFIA_uc010oos.1_Missense_Mutation_p.S189N|NFIA_uc001czv.2_Missense_Mutation_p.S144N	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	144	CTF/NF-I.				DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						CCGCTGGAAAGTACTGATGGC	0.473													32	74					0	0	0.012213	0	0
C1orf173	127254	broad.mit.edu	37	1	75038269	75038269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:75038269C>T	uc001dgg.2	-	14	3344	c.3125G>A	c.(3124-3126)AGG>AAG	p.R1042K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1042	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ATCATCTTCCCTATTAGCTTC	0.468													42	139					0	0	0.010771	0	0
PTGFR	5737	broad.mit.edu	37	1	79002193	79002193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:79002193C>T	uc001din.2	+	3	1167	c.901C>T	c.(901-903)CCT>TCT	p.P301S	PTGFR_uc001dim.2_3'UTR	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	301	Helical; Name=7; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	AATCTTAGATCCTTGGGTATA	0.393													22	48					0	0	0.014323	0	0
ELTD1	64123	broad.mit.edu	37	1	79357242	79357242	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:79357242G>A	uc001diq.3	-	14	2133	c.1977C>T	c.(1975-1977)TTC>TTT	p.F659F		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	659	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		ATAAAAAAATGAACATCCCCT	0.398													12	29					0	0	0.016723	0	0
CCDC18	343099	broad.mit.edu	37	1	93646302	93646302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:93646302G>A	uc001dpq.2	+	1	383	c.215G>A	c.(214-216)GGG>GAG	p.G72E	TMED5_uc001dpn.2_5'Flank|TMED5_uc001dpo.2_5'Flank|TMED5_uc001dpp.2_5'Flank	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	Error:Variant_position_missing_in_Q5T9S5_after_alignment										ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		TGTGCTGCCGGGGTTCGCTGG	0.701													13	29					0	0	0.013537	0	0
ABCD3	5825	broad.mit.edu	37	1	94956753	94956754	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:94956753_94956754CC>TT	uc001dqn.3	+	16	1438_1439	c.1336_1337CC>TT	c.(1336-1338)CCT>TTT	p.P446F	ABCD3_uc010oto.1_Missense_Mutation_p.P470F|ABCD3_uc010otp.1_Missense_Mutation_p.P373F|ABCD3_uc009wdr.2_Missense_Mutation_p.P336F|ABCD3_uc001dqo.3_Missense_Mutation_p.P134F	NM_002858	NP_002849	P28288	ABCD3_HUMAN	ATP-binding cassette, sub-family D, member 3	446	ABC transporter.				peroxisomal long-chain fatty acid import|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(1)	1		all_lung(203;0.000434)|Lung NSC(277;0.0019)		all cancers(265;0.0261)|Epithelial(280;0.165)		TGATCATGTTCCTTTAGCAACG	0.203													15	30					0	0	0.004672	0	0
OVGP1	5016	broad.mit.edu	37	1	111963975	111963975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:111963975C>T	uc001eba.2	-	8	882	c.826G>A	c.(826-828)GGG>AGG	p.G276R	OVGP1_uc001eaz.2_Missense_Mutation_p.G238R|OVGP1_uc010owb.1_Intron	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	276					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		GCCTGCAACCCATTCTTAGAG	0.502													41	109					0	0	0.009718	0	0
OLFML3	56944	broad.mit.edu	37	1	114524268	114524269	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:114524268_114524269CC>TT	uc001eer.1	+	3	1207_1208	c.1098_1099CC>TT	c.(1096-1101)CCCCGC>CCTTGC	p.R367C	OLFML3_uc001ees.1_Missense_Mutation_p.R347C|OLFML3_uc001eet.1_Missense_Mutation_p.R223C	NM_020190	NP_064575	Q9NRN5	OLFL3_HUMAN	olfactomedin-like 3 precursor	367	Olfactomedin-like.				multicellular organismal development	extracellular region					0	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTTATTTTCCCCGCAGATATGG	0.584													15	43					0	0	0.004672	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			34	76					3.62531e-18	3.9734e-18	0.019004	1	0
REG4	83998	broad.mit.edu	37	1	120337285	120337285	+	Missense_Mutation	SNP	C	T	T	rs150927973		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:120337285C>T	uc001eig.2	-	7	873	c.433G>A	c.(433-435)GAA>AAA	p.E145K	REG4_uc001eif.2_Missense_Mutation_p.E145K	NM_001159352	NP_001152824	Q9BYZ8	REG4_HUMAN	regenerating islet-derived family, member 4	145	C-type lectin.					extracellular region	sugar binding			ovary(1)	1	all_cancers(5;4.81e-10)|all_epithelial(5;7.98e-11)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;8.1e-07)|Lung NSC(69;5.89e-06)|all_epithelial(167;0.000959)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0588)		TTGTTGCATTCGTTGCTGCTC	0.423													170	372					0	0	0.014410	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367791	145367791	+	Missense_Mutation	SNP	G	A	A	rs78046651		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:145367791G>A	uc001end.3	+	85	10647	c.10612G>A	c.(10612-10614)GGG>AGG	p.G3538R	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3463											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		aagaaaagaaggggaagaaga	0.264													23	39					0	0	0.021523	0	0
FCGR1C	100132417	broad.mit.edu	37	1	149376778	149376778	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:149376778G>A	uc010pbh.1	+	5		c.717G>A				NR_027484				Homo sapiens cDNA FLJ77773 complete cds, highly similar to Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A), mRNA.												0						CAGAGGCCTGGTTTGCAGCTT	0.498													27	24					0	0	0.006320	0	0
SF3B4	10262	broad.mit.edu	37	1	149895856	149895856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:149895856G>A	uc001etj.1	-	5	1015	c.964C>T	c.(964-966)CCC>TCC	p.P322S	SF3B4_uc001eti.1_Missense_Mutation_p.P86S|SF3B4_uc001etk.1_Missense_Mutation_p.P322S	NM_005850	NP_005841	Q15427	SF3B4_HUMAN	splicing factor 3b, subunit 4	322						nucleoplasm|U12-type spliceosomal complex	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Breast(34;0.0009)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			CCAGCGTGGGGATGTCCTAAG	0.522													3	20					0	0	0.001168	0	0
TARS2	80222	broad.mit.edu	37	1	150471505	150471505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:150471505G>A	uc001euq.2	+	12	1541	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Missense_Mutation_p.E430K|TARS2_uc009wlt.2_Missense_Mutation_p.E138K|TARS2_uc009wls.2_Missense_Mutation_p.E382K	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	512					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	GGACCAGGCCGAACAGGTGAG	0.562													35	118					0	0	0.017118	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059674	152059674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:152059674C>T	uc001ezo.1	-	3	549	c.484G>A	c.(484-486)GAA>AAA	p.E162K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	162							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GTCTTGGCTTCTCTCCATGGG	0.453													25	103					0	0	0.004656	0	0
TCHH	7062	broad.mit.edu	37	1	152085305	152085305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:152085305C>T	uc001ezp.2	-	2	388	c.388G>A	c.(388-390)GAA>AAA	p.E130K	TCHH_uc009wne.1_Missense_Mutation_p.E130K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	130					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGTTCTTCTTCCAGTTGTCTG	0.552													78	236					0	0	0.014410	0	0
HRNR	388697	broad.mit.edu	37	1	152188101	152188101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:152188101C>T	uc001ezt.1	-	3	6080	c.6004G>A	c.(6004-6006)GGC>AGC	p.G2002S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2002	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGACCGTAGCCAGAGGACTGT	0.567													8	490					0	0	0.007291	0	0
LCE2C	353140	broad.mit.edu	37	1	152648614	152648614	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:152648614C>T	uc001fah.2	+	2	178	c.123C>T	c.(121-123)TTC>TTT	p.F41F		NM_178429	NP_848516	Q5TA81	LCE2C_HUMAN	late cornified envelope 2C	41	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCCATGTTTCCCTGCAGTCT	0.473													79	100					0	0	0.014410	0	0
LCE4A	199834	broad.mit.edu	37	1	152681714	152681714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:152681714G>A	uc001fak.2	+	1	192	c.163G>A	c.(163-165)GGA>AGA	p.G55R		NM_178356	NP_848133	Q5TA78	LCE4A_HUMAN	late cornified envelope 4A	55	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.116)			CAGCTCTGAGGGAGGTGGCTG	0.597													19	66					0	0	0.006320	0	0
LCE1B	353132	broad.mit.edu	37	1	152784987	152784987	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:152784987C>T	uc001faq.2	+	1	541	c.65C>T	c.(64-66)CCC>CTC	p.P22L		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	22	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			aagtgccctcccaagtgccTC	0.498													34	100					0	0	0.017118	0	0
NUP210L	91181	broad.mit.edu	37	1	154026785	154026785	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:154026785C>T	uc001fdw.2	-	25	3474	c.3402G>A	c.(3400-3402)GGG>GGA	p.G1134G	NUP210L_uc009woq.2_Silent_p.G43G|NUP210L_uc010peh.1_Silent_p.G1134G	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1134						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CAACAATCTTCCCTGTAACTT	0.473													31	45					0	0	0.009535	0	0
NUP210L	91181	broad.mit.edu	37	1	154090314	154090314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:154090314C>T	uc001fdw.2	-	12	1579	c.1507G>A	c.(1507-1509)GAA>AAA	p.E503K	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.E503K	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	503						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			ACCACTGTTTCATTAGAAGAA	0.408													43	41					0	0	0.011902	0	0
KCNN3	3782	broad.mit.edu	37	1	154744721	154744721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:154744721G>A	uc001ffp.2	-	3	1492	c.1178C>T	c.(1177-1179)TCC>TTC	p.S393F	KCNN3_uc001ffo.2_Missense_Mutation_p.S88F|KCNN3_uc009wox.1_Missense_Mutation_p.S393F	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	398						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GGGTGTGTAGGAGAAGGCCAG	0.607													8	37					0	0	0.006214	0	0
ASH1L	55870	broad.mit.edu	37	1	155429661	155429661	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:155429661G>A	uc009wqq.2	-	4	5493	c.5013C>T	c.(5011-5013)TCC>TCT	p.S1671S	ASH1L_uc001fkt.2_Silent_p.S1671S	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1671	Ser-rich.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			ATGGCCGCTGGGAGGGTTTAT	0.403													27	55					0	0	0.008361	0	0
INSRR	3645	broad.mit.edu	37	1	156813996	156813996	+	Silent	SNP	A	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:156813996A>C	uc010pht.1	-	15	3068	c.2814T>G	c.(2812-2814)GCT>GCG	p.A938A	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	938	Helical; (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					AACCAAGGGCAGCAAGAACGA	0.587													16	72					0	0	0.006122	0	0
FCRL4	83417	broad.mit.edu	37	1	157556241	157556241	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:157556241G>A	uc001fqw.2	-	6	988	c.852C>T	c.(850-852)ATC>ATT	p.I284I	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	284	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				CAGACACAGGGATCCCTATGT	0.602													43	55					0	0	0.010771	0	0
OR6K6	128371	broad.mit.edu	37	1	158725296	158725296	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:158725296G>T	uc001fsw.1	+	1	691	c.691G>T	c.(691-693)GCA>TCA	p.A231S		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	231	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					TGCCATCCATGCAGCGGAAAT	0.483													22	69					9.57634e-11	1.04836e-10	0.018920	1	0
MNDA	4332	broad.mit.edu	37	1	158815488	158815488	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:158815488C>G	uc001fsz.1	+	5	882	c.682C>G	c.(682-684)CCA>GCA	p.P228A		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	228	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					ATACGAGTCCCCAGAAAATGG	0.448													21	28					0	0	0.016522	0	0
CADM3	57863	broad.mit.edu	37	1	159169545	159169545	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:159169545C>T	uc001ftl.2	+	8	1099	c.957C>T	c.(955-957)CCC>CCT	p.P319P	CADM3_uc001ftk.2_Silent_p.P353P|uc001ftm.1_Intron	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	319	Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					TTCCAGACCCCAGTCCGGTGC	0.537													19	69					0	0	0.018920	0	0
SLAMF8	56833	broad.mit.edu	37	1	159799733	159799733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:159799733C>T	uc001fue.3	+	2	328	c.118C>T	c.(118-120)CCC>TCC	p.P40S		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	40	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					GGCAGCGCGTCCCCCTGGCTT	0.597													128	137					0	0	0.014410	0	0
CD48	962	broad.mit.edu	37	1	160648920	160648920	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:160648920G>A	uc001fwn.2	-	4	686	c.654C>T	c.(652-654)GCC>GCT	p.A218A		NM_001778	NP_001769	P09326	CD48_HUMAN	CD48 molecule precursor	218					blood coagulation|defense response|leukocyte migration	integral to plasma membrane|membrane raft	protein binding				0	all_cancers(52;2.18e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CAAAGGACCGGGCTGAAAGAG	0.468													23	76					0	0	0.004656	0	0
LY9	4063	broad.mit.edu	37	1	160769730	160769730	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:160769730G>A	uc001fwu.2	+	2	362	c.312G>A	c.(310-312)CTG>CTA	p.L104L	LY9_uc001fwt.2_Silent_p.L104L|LY9_uc010pjs.1_Silent_p.L104L|LY9_uc001fwv.2_Silent_p.L104L|LY9_uc001fww.2_Silent_p.L104L|LY9_uc001fwx.2_Silent_p.L104L|LY9_uc001fwy.1_Silent_p.L6L	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	104	Extracellular (Potential).|Ig-like V-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AAAGCTACCTGGGCCGACTAG	0.448													69	67					0	0	0.014410	0	0
OLFML2B	25903	broad.mit.edu	37	1	161970012	161970012	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:161970012C>T	uc001gbu.2	-	5	1264	c.840G>A	c.(838-840)CAG>CAA	p.Q280Q	OLFML2B_uc010pkq.1_Silent_p.Q281Q	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	280										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			GGACCTGCCTCTGCAGGGGCC	0.592													32	53					0	0	0.017118	0	0
GPA33	10223	broad.mit.edu	37	1	167059496	167059496	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:167059496C>T	uc001gea.1	-	1	373	c.29G>A	c.(28-30)TGG>TAG	p.W10*		NM_005814	NP_005805	Q99795	GPA33_HUMAN	transmembrane glycoprotein A33 precursor	10						integral to plasma membrane	receptor activity				0						ACAGAGTGTCCACAACACAGG	0.572													18	43					0	0	0.016522	0	0
C1orf114	57821	broad.mit.edu	37	1	169390915	169390915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:169390915G>A	uc001gga.1	-	3	922	c.754C>T	c.(754-756)CCT>TCT	p.P252S	C1orf114_uc001gfz.1_Missense_Mutation_p.P252S|C1orf114_uc009wvq.1_Missense_Mutation_p.P252S|C1orf114_uc001ggb.2_Missense_Mutation_p.P252S|C1orf114_uc001ggc.1_Missense_Mutation_p.P252S	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	252											0	all_hematologic(923;0.208)					AACTGCTGAGGGTCATTTTCT	0.418													52	66					0	0	0.014410	0	0
TNR	7143	broad.mit.edu	37	1	175328850	175328850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:175328850C>T	uc001gkp.1	-	13	2953	c.2872G>A	c.(2872-2874)GAT>AAT	p.D958N	TNR_uc009wwu.1_Missense_Mutation_p.D958N	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	958	Fibronectin type-III 8.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GCAATCAGATCCACAGGGTTG	0.463													24	26					0	0	0.004656	0	0
PAPPA2	60676	broad.mit.edu	37	1	176675571	176675571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:176675571G>A	uc001gkz.2	+	10	4606	c.3442G>A	c.(3442-3444)GGT>AGT	p.G1148S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1148					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding	p.G1148V(1)		ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCTGGAGGAAGGTTTCAACTG	0.418													8	45					0	0	0.003080	0	0
PAPPA2	60676	broad.mit.edu	37	1	176681030	176681030	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:176681030C>T	uc001gkz.2	+	12	4875	c.3711C>T	c.(3709-3711)CCC>CCT	p.P1237P	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1237					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCTGGTTTCCCTGTGTTGCCA	0.453													22	75					0	0	0.014323	0	0
FAM5B	57795	broad.mit.edu	37	1	177250510	177250510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:177250510C>T	uc001glf.2	+	8	2510	c.2198C>T	c.(2197-2199)CCT>CTT	p.P733L	FAM5B_uc001glg.2_Missense_Mutation_p.P628L	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	733						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTTTCTCCACCTGGCAAAGTC	0.542													24	88					0	0	0.018920	0	0
RASAL2	9462	broad.mit.edu	37	1	178412129	178412129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:178412129C>T	uc001glr.2	+	6	928	c.803C>T	c.(802-804)CCA>CTA	p.P268L	RASAL2_uc001glq.2_Missense_Mutation_p.P416L	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	268					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						AAGTGGTATCCAGTGAGTACA	0.418													33	34					0	0	0.012213	0	0
CACNA1E	777	broad.mit.edu	37	1	181754921	181754921	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:181754921C>T	uc001gow.2	+	43	5917	c.5752C>T	c.(5752-5754)CTG>TTG	p.L1918L	CACNA1E_uc009wxs.2_Silent_p.L1806L|CACNA1E_uc009wxt.2_Silent_p.L1144L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1918	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGCCAAAGCCCTGCCTTACCT	0.522													145	172					0	0	0.014410	0	0
DHX9	1660	broad.mit.edu	37	1	182845222	182845222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:182845222C>T	uc001gpr.2	+	17	2016	c.1853C>T	c.(1852-1854)CCA>CTA	p.P618L	DHX9_uc001gps.2_Missense_Mutation_p.P404L	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	618					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						GAATATGGTCCAGAAACAAGG	0.388													17	61					0	0	0.004990	0	0
LAMC2	3918	broad.mit.edu	37	1	183204779	183204779	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:183204779C>T	uc001gqa.2	+	16	2684	c.2370C>T	c.(2368-2370)CTC>CTT	p.L790L	LAMC2_uc001gpz.3_Silent_p.L790L|LAMC2_uc010poa.1_Silent_p.L490L	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	790	Domain II and I.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						AACAAGCCCTCTCACTGGTGC	0.517											OREG0014042	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	25					0	0	0.014323	0	0
FAM5C	339479	broad.mit.edu	37	1	190424010	190424010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:190424010C>T	uc001gse.1	-	2	243	c.11G>A	c.(10-12)CGA>CAA	p.R4Q	FAM5C_uc010pot.1_5'UTR	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	4						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AGCTCTGCTTCGCCATATCAT	0.463													20	29					0	0	0.014323	0	0
CRB1	23418	broad.mit.edu	37	1	197404165	197404165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:197404165G>A	uc001gtz.2	+	9	3307	c.3172G>A	c.(3172-3174)GAA>AAA	p.E1058K	CRB1_uc010poz.1_Missense_Mutation_p.E1034K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.E946K|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.E539K|CRB1_uc001gub.1_Missense_Mutation_p.E707K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1058	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGTGGACAACGAAACACCTTT	0.443													26	112					0	0	0.007291	0	0
IGFN1	91156	broad.mit.edu	37	1	201195161	201195161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:201195161G>A	uc001gwc.2	+	11	2948	c.2176G>A	c.(2176-2178)GAA>AAA	p.E726K	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CCCCGGCCACGAATACCACTT	0.677													11	40					0	0	0.016723	0	0
LAD1	3898	broad.mit.edu	37	1	201353961	201353961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:201353961C>T	uc001gwm.2	-	5	1369	c.1134G>A	c.(1132-1134)ATG>ATA	p.M378I	LAD1_uc009wzu.1_Missense_Mutation_p.M400I	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	378						basement membrane	structural molecule activity				0						TCTTGGGTTTCATCTGAAATG	0.527													66	64					0	0	0.014410	0	0
LGR6	59352	broad.mit.edu	37	1	202283943	202283943	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:202283943G>A	uc001gxu.2	+	17	1581	c.1581G>A	c.(1579-1581)CTG>CTA	p.L527L	LGR6_uc001gxv.2_Silent_p.L475L|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Silent_p.L388L	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	527	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						ACCAGGACCTGGATGAGCTCC	0.562													35	46					0	0	0.021022	0	0
PPFIA4	8497	broad.mit.edu	37	1	203025567	203025567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:203025567C>T	uc001gyz.2	+	5	1246	c.653C>T	c.(652-654)CCT>CTT	p.P218L	PPFIA4_uc009xaj.2_Missense_Mutation_p.P849L|PPFIA4_uc010pqf.1_Missense_Mutation_p.P431L|PPFIA4_uc001gza.2_Missense_Mutation_p.P218L|PPFIA4_uc001gzb.1_5'Flank	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	218					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						ACTTCTCCTCCTTCCTCACCC	0.567													32	34					0	0	0.013726	0	0
SOX13	9580	broad.mit.edu	37	1	204093858	204093858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:204093858C>T	uc001ham.2	+	13	2060	c.1465C>T	c.(1465-1467)CCT>TCT	p.P489S	SOX13_uc010pqp.1_Missense_Mutation_p.P488S|SOX13_uc010pqq.1_Missense_Mutation_p.P356S	NM_005686	NP_005677	Q9UN79	SOX13_HUMAN	SRY-box 13	489	HMG box.				anatomical structure morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2	all_cancers(21;0.0754)|Breast(84;0.116)|all_epithelial(62;0.189)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)			GGAGAAGTATCCTGACTACAA	0.622													9	34					0	0	0.006214	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204197305	204197305	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:204197305C>T	uc001hau.2	-	21	3254	c.2937G>A	c.(2935-2937)CAG>CAA	p.Q979Q		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	979										ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			TCTCTGAGTCCTGGGGCACGT	0.627													20	83					0	0	0.014323	0	0
NFASC	23114	broad.mit.edu	37	1	204949559	204949559	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:204949559C>T	uc001hbj.2	+	20	2566	c.2238C>T	c.(2236-2238)ATC>ATT	p.I746I	NFASC_uc010pra.1_Silent_p.I742I|NFASC_uc001hbi.2_Silent_p.I742I|NFASC_uc010prb.1_Silent_p.I757I|NFASC_uc010prc.1_Silent_p.I313I|NFASC_uc001hbk.1_Silent_p.I552I|NFASC_uc001hbl.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	746	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			ACATGGAGATCACGTGGACGG	0.602													15	13					0	0	0.004007	0	0
PM20D1	148811	broad.mit.edu	37	1	205819130	205819130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:205819130C>T	uc001hdj.2	-	1	116	c.71G>A	c.(70-72)AGA>AAA	p.R24K	PM20D1_uc009xbr.2_RNA	NM_152491	NP_689704	Q6GTS8	P20D1_HUMAN	peptidase M20 domain containing 1 precursor	24						extracellular region	metal ion binding|peptidase activity			skin(1)	1	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			GCCCATCGATCTGGAGACGGT	0.597													39	62					0	0	0.011902	0	0
SRGAP2	23380	broad.mit.edu	37	1	206634486	206634486	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:206634486C>T	uc001hdy.2	+	20	3009	c.2676C>T	c.(2674-2676)CCC>CCT	p.P892P	SRGAP2_uc010pru.1_Silent_p.P815P	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	979					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					CCTTGGAGCCCCTCAAAACCT	0.622													10	39					0	0	0.008291	0	0
IKBKE	9641	broad.mit.edu	37	1	206658624	206658624	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:206658624C>T	uc001hdz.1	+	15	1965	c.1597C>T	c.(1597-1599)CAG>TAG	p.Q533*	IKBKE_uc009xbv.1_Nonsense_Mutation_p.Q533*|IKBKE_uc001hea.1_Nonsense_Mutation_p.Q448*	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	533					DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					GAGCCGGGATCAGGTACATGA	0.567													10	56					0	0	0.016723	0	0
CR1	1378	broad.mit.edu	37	1	207789995	207789995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:207789995G>A	uc001hfy.2	+	33	5527	c.5387G>A	c.(5386-5388)GGA>GAA	p.G1796E	CR1_uc001hfx.2_Missense_Mutation_p.G2246E	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1796	Sushi 28.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						ATTCCCTATGGAAAAGAAATA	0.468													78	138					0	0	0.014410	0	0
LAMB3	3914	broad.mit.edu	37	1	209803960	209803960	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:209803960T>C	uc001hhg.2	-	8	1333	c.943A>G	c.(943-945)AGG>GGG	p.R315G	LAMB3_uc009xco.2_Missense_Mutation_p.R315G|LAMB3_uc001hhh.2_Missense_Mutation_p.R315G|LAMB3_uc010psl.1_RNA|LAMB3_uc009xcp.1_Missense_Mutation_p.S251G	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	315	Laminin EGF-like 1.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		AAGCTCCTACTTTGGCATTCA	0.612													20	77					0	0	0.014323	0	0
NEK2	4751	broad.mit.edu	37	1	211846988	211846988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:211846988C>T	uc001hir.1	-	3	538	c.392G>A	c.(391-393)AGT>AAT	p.S131N	NEK2_uc001hiq.1_Missense_Mutation_p.S131N|NEK2_uc001his.3_Missense_Mutation_p.S131N|NEK2_uc001hit.1_RNA	NM_002497	NP_002488	P51955	NEK2_HUMAN	NIMA-related kinase 2	131	Protein kinase.				cell division|centrosome separation|G2/M transition of mitotic cell cycle|meiosis|protein autophosphorylation|regulation of mitosis	centrosome|condensed chromosome kinetochore|cytosol|nucleolus	ATP binding|metal ion binding|protein binding|protein phosphatase binding|protein serine/threonine kinase activity			breast(2)|stomach(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.00203)|all cancers(67;0.0339)|Epithelial(68;0.0546)		ACCACCATCACTTCGTCTGTG	0.458													28	112					0	0	0.007291	0	0
USH2A	7399	broad.mit.edu	37	1	215848664	215848664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:215848664C>T	uc001hku.1	-	63	12976	c.12589G>A	c.(12589-12591)GGA>AGA	p.G4197R		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4197	Extracellular (Potential).|Fibronectin type-III 27.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CAAGCTTTTCCCTCGAAGCAT	0.418										HNSCC(13;0.011)			19	160					0	0	0.008871	0	0
USH2A	7399	broad.mit.edu	37	1	216373145	216373145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:216373145G>A	uc001hku.1	-	17	4022	c.3635C>T	c.(3634-3636)CCA>CTA	p.P1212L	USH2A_uc001hkv.2_Missense_Mutation_p.P1212L	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1212	Extracellular (Potential).|Fibronectin type-III 2.		P -> L (in USH2A).		maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTTGGCAAATGGAACCAGATT	0.498										HNSCC(13;0.011)			39	90					0	0	0.007835	0	0
GPATCH2	55105	broad.mit.edu	37	1	217784256	217784256	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:217784256G>A	uc001hlf.1	-	4	1089	c.993C>T	c.(991-993)CCC>CCT	p.P331P	GPATCH2_uc001hlg.3_Silent_p.P331P	NM_018040	NP_060510	Q9NW75	GPTC2_HUMAN	G patch domain containing 2	331						intracellular	nucleic acid binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0397)|all cancers(67;0.0744)|GBM - Glioblastoma multiforme(131;0.0872)		GTGACATAAGGGGAAAAGAAC	0.438													11	81					0	0	0.010729	0	0
ACTA1	58	broad.mit.edu	37	1	229568416	229568416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:229568416G>A	uc001htm.2	-	3	446	c.341C>T	c.(340-342)CCC>CTC	p.P114L		NM_001100	NP_001091	P68133	ACTS_HUMAN	actin, alpha 1, skeletal muscle	114					muscle filament sliding|skeletal muscle fiber development|skeletal muscle thin filament assembly	actin filament|cytosol|stress fiber|striated muscle thin filament	ADP binding|ATP binding|myosin binding|structural constituent of cytoskeleton				0	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.167)			Dornase Alfa(DB00003)	GTTGGCCTTGGGATTGAGGGG	0.612													51	160					0	0	0.014410	0	0
C1orf198	84886	broad.mit.edu	37	1	230979542	230979542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:230979542G>A	uc001hub.2	-	3	529	c.485C>T	c.(484-486)TCC>TTC	p.S162F	C1orf198_uc009xfh.1_Missense_Mutation_p.S32F|C1orf198_uc001huc.1_5'UTR|C1orf198_uc001hud.1_Missense_Mutation_p.S124F	NM_032800	NP_116189	Q9H425	CA198_HUMAN	hypothetical protein LOC84886 isoform 1	162											0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				GAGGGCCTGGGAGCCCTGGGA	0.627													95	186					0	0	0.014410	0	0
PCNXL2	80003	broad.mit.edu	37	1	233275579	233275579	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:233275579G>A	uc001hvl.2	-	20	3775	c.3540C>T	c.(3538-3540)TTC>TTT	p.F1180F	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1180						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AGAGTCTTTCGAACCACATTA	0.323													29	13					0	0	0.015359	0	0
PCNXL2	80003	broad.mit.edu	37	1	233296092	233296092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:233296092G>A	uc001hvl.2	-	19	3689	c.3454C>T	c.(3454-3456)CCC>TCC	p.P1152S	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1152						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CACATCCAGGGATGATGCTTG	0.433													15	84					0	0	0.004007	0	0
KIAA1804	84451	broad.mit.edu	37	1	233515097	233515097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:233515097C>T	uc001hvt.3	+	9	2606	c.2345C>T	c.(2344-2346)TCC>TTC	p.S782F	KIAA1804_uc001hvu.3_Missense_Mutation_p.S228F	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	782					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				AGCCTGCCATCCACCTGTGGG	0.597													26	121					0	0	0.006320	0	0
KCNK1	3775	broad.mit.edu	37	1	233807082	233807082	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:233807082C>T	uc010pxo.1	+	3	985	c.817C>T	c.(817-819)CTG>TTG	p.L273L	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	273	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	ACTCCATGAGCTGAAAAAATT	0.443													16	94					0	0	0.003163	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367213	234367213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:234367213G>A	uc001hwa.1	+	2	355	c.127G>A	c.(127-129)GCC>ACC	p.A43T	SLC35F3_uc001hvy.1_Missense_Mutation_p.A112T	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	43					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			CCAGGCACCGGCCGGGGTGGA	0.736													16	31					0	0	0.007413	0	0
SLC35F3	148641	broad.mit.edu	37	1	234454656	234454656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:234454656G>A	uc001hwa.1	+	5	1135	c.907G>A	c.(907-909)GGA>AGA	p.G303R	SLC35F3_uc001hvy.1_Missense_Mutation_p.G372R	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	303					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			CATTCCATGGGGAAACCTTTG	0.423													87	143					0	0	0.014410	0	0
ARID4B	51742	broad.mit.edu	37	1	235346091	235346091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:235346091C>T	uc001hwq.2	-	20	2641	c.2143G>A	c.(2143-2145)GAA>AAA	p.E715K	ARID4B_uc001hwr.2_Missense_Mutation_p.E629K|ARID4B_uc001hws.3_Missense_Mutation_p.E629K|ARID4B_uc001hwp.2_RNA|ARID4B_uc001hwt.3_Missense_Mutation_p.E396K	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	715					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			TCACTGTCTTCAGCAGAACTT	0.363													45	35					0	0	0.014410	0	0
ACTN2	88	broad.mit.edu	37	1	236902833	236902833	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:236902833G>A	uc001hyf.2	+	10	1311	c.1107_splice	c.e10+1	p.S369_splice	ACTN2_uc001hyg.2_Splice_Site_p.S161_splice|ACTN2_uc009xgi.1_Splice_Site_p.S369_splice|ACTN2_uc010pxu.1_Intron|ACTN2_uc001hyh.2_Splice_Site_p.S57_splice	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2						focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GATGGTGTCGGTGAGTAGCAA	0.582													10	37					0	0	0.006214	0	0
NLRP3	114548	broad.mit.edu	37	1	247587738	247587738	+	Silent	SNP	C	T	T	rs104895401		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:247587738C>T	uc001icr.2	+	5	1131	c.993C>T	c.(991-993)CTC>CTT	p.L331L	NLRP3_uc001ics.2_Silent_p.L331L|NLRP3_uc001icu.2_Silent_p.L331L|NLRP3_uc001icw.2_Silent_p.L331L|NLRP3_uc001icv.2_Silent_p.L331L|NLRP3_uc010pyw.1_Silent_p.L329L|NLRP3_uc001ict.1_Silent_p.L329L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	331	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GAGACATTCTCCTGAGCAGCC	0.582													30	102					0	0	0.007291	0	0
OR2L13	284521	broad.mit.edu	37	1	248263173	248263173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr1:248263173C>T	uc001ids.2	+	3	833	c.496C>T	c.(496-498)CCC>TCC	p.P166S		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CCTTCATATTCCCTACTGCAG	0.458													167	119					0	0	0.014410	0	0
AKR1C4	1109	broad.mit.edu	37	10	5254973	5254973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:5254973C>T	uc001ihw.2	+	7	730	c.697C>T	c.(697-699)CCA>TCA	p.P233S		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	233	NADP.				androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	CCCAAACTCCCCAGTTCTTTT	0.512													12	26					0	0	0.016723	0	0
FBXO18	84893	broad.mit.edu	37	10	5948180	5948180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:5948180C>T	uc001iis.2	+	3	433	c.338C>T	c.(337-339)TCA>TTA	p.S113L	FBXO18_uc001iir.2_Missense_Mutation_p.S39L|FBXO18_uc009xig.2_Missense_Mutation_p.S39L|FBXO18_uc001iit.2_Missense_Mutation_p.S164L	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	113					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						GGGCCGGGCTCACCAGGGTCT	0.602													20	36					0	0	0.012319	0	0
NSUN6	221078	broad.mit.edu	37	10	18837064	18837064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:18837064G>A	uc010qcp.1	-	10	1592	c.1174C>T	c.(1174-1176)CCT>TCT	p.P392S	NSUN6_uc001iqb.2_5'Flank	NM_182543	NP_872349	Q8TEA1	NSUN6_HUMAN	NOL1/NOP2/Sun domain family, member 6	392							methyltransferase activity|RNA binding			ovary(2)	2						TGAAGGCAAGGAAATTTTGTC	0.453													5	14					0	0	0.001168	0	0
C10orf113	387638	broad.mit.edu	37	10	21414888	21414888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:21414888G>A	uc001iqm.2	-	2	322	c.302C>T	c.(301-303)CCA>CTA	p.P101L	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	111										ovary(3)|pancreas(1)	4						CCAGTTGCCTGGATCTGGTTC	0.537													19	44					0	0	0.008871	0	0
MPP7	143098	broad.mit.edu	37	10	28409259	28409259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:28409259C>T	uc001iua.1	-	12	1155	c.751G>A	c.(751-753)GAA>AAA	p.E251K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E251K|MPP7_uc009xla.2_Missense_Mutation_p.E251K|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	251	SH3.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						AGCCCAGCTTCCTTACATGGA	0.383													15	72					0	0	0.004990	0	0
PARD3	56288	broad.mit.edu	37	10	34688294	34688294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:34688294C>T	uc010qej.1	-	7	854	c.854G>A	c.(853-855)GGA>GAA	p.G285E	PARD3_uc010qek.1_Missense_Mutation_p.G285E|PARD3_uc010qel.1_Missense_Mutation_p.G285E|PARD3_uc010qem.1_Missense_Mutation_p.G285E|PARD3_uc010qen.1_Missense_Mutation_p.G285E|PARD3_uc010qeo.1_Missense_Mutation_p.G285E|PARD3_uc010qep.1_Missense_Mutation_p.G241E|PARD3_uc010qeq.1_Missense_Mutation_p.G241E|PARD3_uc001ixo.1_Missense_Mutation_p.G15E|PARD3_uc001ixp.1_Missense_Mutation_p.G150E|PARD3_uc001ixq.1_Missense_Mutation_p.G285E|PARD3_uc001ixr.1_Missense_Mutation_p.G285E|PARD3_uc001ixt.1_Missense_Mutation_p.G106E|PARD3_uc001ixu.1_Missense_Mutation_p.G241E	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	285	PDZ 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				TACGTGGATTCCCAGAGGCCC	0.423													37	93					0	0	0.013114	0	0
LOC441666	441666	broad.mit.edu	37	10	42832122	42832122	+	RNA	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:42832122C>T	uc010qey.1	-	3		c.1853G>A				NR_024380				Homo sapiens noncoding mRNA sequence.												0						CAGTAAAAGGCTTTGCCACAT	0.348													3	6					0	0	0.014758	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285397	44285397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:44285397C>T	uc010qfe.1	-	1	469	c.439G>A	c.(439-441)GAA>AAA	p.E147K		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						CCGTACTTTTCAAAGTAGTCT	0.363													15	13					0	0	0.003163	0	0
OGDHL	55753	broad.mit.edu	37	10	50944552	50944552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:50944552G>A	uc001jie.2	-	21	2747	c.2605C>T	c.(2605-2607)CGG>TGG	p.R869W	OGDHL_uc009xog.2_Missense_Mutation_p.R896W|OGDHL_uc010qgt.1_Missense_Mutation_p.R812W|OGDHL_uc010qgu.1_Missense_Mutation_p.R660W	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	869					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GGAATCACCCGCTGGAAGCTG	0.642													17	25					0	0	0.006122	0	0
A1CF	29974	broad.mit.edu	37	10	52573757	52573757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:52573757C>T	uc001jjj.2	-	10	1395	c.1207G>A	c.(1207-1209)GCA>ACA	p.A403T	A1CF_uc010qhn.1_Missense_Mutation_p.A403T|A1CF_uc001jji.2_Missense_Mutation_p.A395T|A1CF_uc001jjh.2_Missense_Mutation_p.A403T|A1CF_uc010qho.1_Missense_Mutation_p.A411T|A1CF_uc009xov.2_Missense_Mutation_p.A395T	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	403	Required for nuclear localization.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CCTGTGTATGCCAAATAGCCA	0.483													28	48					0	0	0.008361	0	0
MYPN	84665	broad.mit.edu	37	10	69926172	69926172	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:69926172C>T	uc001jnm.3	+	11	1907	c.1722C>T	c.(1720-1722)CCC>CCT	p.P574P	MYPN_uc001jnl.1_Silent_p.P574P|MYPN_uc001jnn.3_Silent_p.P299P|MYPN_uc001jno.3_Silent_p.P574P|MYPN_uc009xps.2_Silent_p.P574P|MYPN_uc009xpt.2_Silent_p.P574P|MYPN_uc010qit.1_Silent_p.P280P|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	574						nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						AACAACCCCCCAAACCCAAAC	0.577													12	17					0	0	0.013537	0	0
PTEN	5728	broad.mit.edu	37	10	89720876	89720876	+	Splice_Site	SNP	G	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:89720876G>C	uc001kfb.2	+	9	2057	c.1026_splice	c.e9+1	p.K342_splice		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog						activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.?(5)|p.R55fs*1(4)|p.N212fs*1(2)|p.Y27fs*1(2)|p.G165_*404del(1)|p.D326_K342del(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		AAATTTTAAGGTCAGTTAAAT	0.323		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			3	38					0	0	0.009096	0	0
ACTA2	59	broad.mit.edu	37	10	90703574	90703574	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:90703574T>C	uc001kfp.2	-	4	465	c.349A>G	c.(349-351)AAC>GAC	p.N117D	STAMBPL1_uc010qmx.1_Intron|ACTA2_uc010qmy.1_Missense_Mutation_p.N72D|ACTA2_uc001kfq.2_Missense_Mutation_p.N117D|ACTA2_uc010qmz.1_Missense_Mutation_p.N117D	NM_001613	NP_001604	P62736	ACTA_HUMAN	alpha 2 actin	117			N -> T (in AAT6).		response to virus	cytosol	ATP binding				0		Colorectal(252;0.0161)		Colorectal(12;0.000123)|COAD - Colon adenocarcinoma(12;0.00018)		TTCTCCCGGTTGGCCTTGGGG	0.537													25	27					0	0	0.006320	0	0
CYP2C9	1559	broad.mit.edu	37	10	96707649	96707649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:96707649G>A	uc001kka.3	+	4	620	c.595G>A	c.(595-597)GAA>AAA	p.E199K	CYP2C9_uc009xut.2_Missense_Mutation_p.E199K	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	199					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TAACTTAATGGAAAAGTTGAA	0.383													22	37					0	0	0.014323	0	0
CYP2C9	1559	broad.mit.edu	37	10	96708999	96708999	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:96708999C>T	uc001kka.3	+	5	802	c.777C>T	c.(775-777)AAC>AAT	p.N259N	CYP2C9_uc009xut.2_Silent_p.N259N	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	259					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	ACATGAACAACCCTCAGGACT	0.333													14	21					0	0	0.003163	0	0
OPALIN	93377	broad.mit.edu	37	10	98109564	98109564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:98109564C>T	uc001kmj.2	-	4	531	c.92G>A	c.(91-93)GGA>GAA	p.G31E	OPALIN_uc010qor.1_Missense_Mutation_p.G21E|OPALIN_uc001kmi.2_Missense_Mutation_p.G21E|OPALIN_uc001kmk.2_Missense_Mutation_p.G8E|OPALIN_uc010qos.1_RNA	NM_033207	NP_149984	Q96PE5	OPALI_HUMAN	transmembrane protein 10 isoform a	31	Helical; (Potential).					Golgi apparatus|integral to membrane|plasma membrane					0						CGCCGCTAATCCAAGAGAGGG	0.463													4	8					0	0	0.003080	0	0
PSD	5662	broad.mit.edu	37	10	104176318	104176318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:104176318G>A	uc001kvg.1	-	2	1005	c.478C>T	c.(478-480)CCC>TCC	p.P160S	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.P160S|PSD_uc001kvi.1_Missense_Mutation_p.P160S|FBXL15_uc001kvj.1_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	160	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		CCTCTGGCGGGGAGTGGGTCT	0.657													4	6					0	0	0.014758	0	0
PDCD4	27250	broad.mit.edu	37	10	112642835	112642835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr10:112642835C>T	uc001kzh.2	+	4	664	c.421C>T	c.(421-423)CCT>TCT	p.P141S	PDCD4_uc001kzg.2_Missense_Mutation_p.P130S|PDCD4_uc010qre.1_Missense_Mutation_p.P127S	NM_014456	NP_055271	Q53EL6	PDCD4_HUMAN	programmed cell death 4 isoform 1	141					apoptosis|cell aging|negative regulation of cell cycle|negative regulation of JUN kinase activity|negative regulation of transcription, DNA-dependent	cytosol|nucleus	protein binding|RNA binding			ovary(1)|breast(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.000526)|all cancers(201;0.00794)|BRCA - Breast invasive adenocarcinoma(275;0.125)		TGTGAAAGATCCTAACTATGA	0.383													27	30					0	0	0.006320	0	0
IRF7	3665	broad.mit.edu	37	11	612716	612716	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:612716A>G	uc001lqh.2	-	11	1811	c.1441T>C	c.(1441-1443)TGC>CGC	p.C481R	IRF7_uc009ycb.2_Missense_Mutation_p.C375R|IRF7_uc010qwf.1_Missense_Mutation_p.C480R|IRF7_uc001lqf.2_Missense_Mutation_p.C188R|IRF7_uc010qwg.1_Missense_Mutation_p.C188R|IRF7_uc001lqg.2_Missense_Mutation_p.C494R|IRF7_uc001lqi.2_Missense_Mutation_p.C452R|IRF7_uc010qwh.1_Missense_Mutation_p.C188R	NM_001572	NP_001563	Q92985	IRF7_HUMAN	interferon regulatory factor 7 isoform a	481					interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of interferon-alpha production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(49;1.69e-08)|all_epithelial(84;1.65e-05)|Breast(177;0.000231)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;7.68e-28)|Epithelial(43;7.44e-27)|OV - Ovarian serous cystadenocarcinoma(40;3.53e-21)|BRCA - Breast invasive adenocarcinoma(625;6.96e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTGGACAGGCAGAGGCTGAGG	0.602													20	48					0	0	0.012319	0	0
POLR2L	5441	broad.mit.edu	37	11	840420	840420	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:840420G>T	uc001lsc.2	-	2	177	c.156C>A	c.(154-156)CAC>CAA	p.H52Q	TSPAN4_uc001lsd.1_5'Flank|TSPAN4_uc001lse.1_5'Flank|TSPAN4_uc001lsf.1_5'Flank|TSPAN4_uc001lsg.1_5'Flank|TSPAN4_uc001lsh.1_5'Flank	NM_021128	NP_066951	P62875	RPAB5_HUMAN	DNA directed RNA polymerase II polypeptide L	52					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|zinc ion binding				0		all_cancers(49;2.31e-08)|all_epithelial(84;3.72e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.179)|all_lung(207;0.227)		all cancers(45;4.1e-25)|Epithelial(43;3.15e-24)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TCAGGTCCACGTGGGCCAGCA	0.632													5	141					0.00116845	0.00126582	0.001168	1	0
CARS	833	broad.mit.edu	37	11	3041483	3041483	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:3041483G>A	uc001lxh.2	-	10	1058	c.984C>T	c.(982-984)CCC>CCT	p.P328P	CARS_uc001lxe.2_Silent_p.P318P|CARS_uc001lxf.2_Silent_p.P411P|CARS_uc001lxg.2_Silent_p.P328P|CARS_uc010qxo.1_Silent_p.P411P|CARS_uc010qxp.1_Silent_p.P341P	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	328					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	ACGGTTCTCCGGGCTTAGAGG	0.627			T	ALK	ALCL								20	60					0	0	0.014323	0	0
OR52B4	143496	broad.mit.edu	37	11	4389432	4389432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:4389432G>A	uc010qye.1	-	1	94	c.94C>T	c.(94-96)CCA>TCA	p.P32S		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGAAGAATGGGATAGAAATC	0.517													12	17					0	0	0.020292	0	0
OR51F2	119694	broad.mit.edu	37	11	4842792	4842792	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:4842792C>T	uc010qyn.1	+	1	177	c.177C>T	c.(175-177)ATC>ATT	p.I59I		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	59	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATAGCATGATCCTGTTTGTGG	0.488													62	127					0	0	0.014410	0	0
OR51F2	119694	broad.mit.edu	37	11	4842868	4842868	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:4842868C>T	uc010qyn.1	+	1	253	c.253C>T	c.(253-255)CTG>TTG	p.L85L		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	85	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGCCACAGACCTGAGCTTGTC	0.473													42	102					0	0	0.006999	0	0
OR51S1	119692	broad.mit.edu	37	11	4869499	4869499	+	Silent	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:4869499A>G	uc010qyo.1	-	1	940	c.940T>C	c.(940-942)TTG>CTG	p.L314L		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTGGGCTGCAACCTGTTGAGT	0.453													23	45					0	0	0.016522	0	0
OR52E2	119678	broad.mit.edu	37	11	5080058	5080058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:5080058C>T	uc010qyw.1	-	1	800	c.800G>A	c.(799-801)CGA>CAA	p.R267Q		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		GGGCACATTTCGGCCAAAGCG	0.478													16	49					0	0	0.004990	0	0
OR51B5	282763	broad.mit.edu	37	11	5363907	5363907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:5363907G>A	uc001map.1	-	1	848	c.848C>T	c.(847-849)CCA>CTA	p.P283L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATTCATTAGTGGAGGGAACAG	0.388													10	30					0	0	0.010729	0	0
OR51I2	390064	broad.mit.edu	37	11	5475249	5475249	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:5475249C>T	uc010qzf.1	+	1	531	c.531C>T	c.(529-531)TCC>TCT	p.S177S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTTCTCACTCCTACTGCCTGC	0.478													32	68					0	0	0.009535	0	0
STK33	65975	broad.mit.edu	37	11	8494745	8494745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:8494745G>A	uc001mgi.1	-	2	1223	c.304C>T	c.(304-306)CCT>TCT	p.P102S	STK33_uc001mgj.1_Missense_Mutation_p.P102S|STK33_uc001mgk.1_Missense_Mutation_p.P102S|STK33_uc010rbn.1_Missense_Mutation_p.P61S|STK33_uc001mgl.3_Intron|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	102						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		CTTATGTGAGGAACTTTTCCT	0.393													35	94					0	0	0.005524	0	0
CTR9	9646	broad.mit.edu	37	11	10787958	10787958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:10787958G>A	uc001mja.2	+	13	1756	c.1607G>A	c.(1606-1608)CGC>CAC	p.R536H		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	536	TPR 11.				histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		GGCTATTTGCGCCTAGGAGCC	0.308													15	59					0	0	0.004007	0	0
MICAL2	9645	broad.mit.edu	37	11	12225819	12225819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:12225819C>T	uc001mjz.2	+	4	575	c.287C>T	c.(286-288)CCC>CTC	p.P96L	MICAL2_uc010rch.1_Missense_Mutation_p.P96L|MICAL2_uc001mjy.2_Missense_Mutation_p.P96L|MICAL2_uc001mka.2_Missense_Mutation_p.P96L|MICAL2_uc010rci.1_Missense_Mutation_p.P96L|MICAL2_uc001mkb.2_Missense_Mutation_p.P96L|MICAL2_uc001mkc.2_Missense_Mutation_p.P96L	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	96	FAD (Potential).					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GGGGGAGGACCCTGTGGCTTG	0.557													8	36					0	0	0.016723	0	0
NAV2	89797	broad.mit.edu	37	11	19955584	19955584	+	Silent	SNP	C	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:19955584C>G	uc010rdm.1	+	8	2224	c.1863C>G	c.(1861-1863)CTC>CTG	p.L621L	NAV2_uc001mpp.2_Silent_p.L534L|NAV2_uc001mpr.3_Silent_p.L598L	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	621						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						GCTCAGGACTCCCCCAGCAGA	0.617													17	34					0	0	0.007413	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136321	40136321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:40136321G>A	uc001mxa.1	-	2	3486	c.1522C>T	c.(1522-1524)CCA>TCA	p.P508S	LRRC4C_uc001mxc.1_Missense_Mutation_p.P504S|LRRC4C_uc001mxd.1_Missense_Mutation_p.P504S|LRRC4C_uc001mxb.1_Missense_Mutation_p.P504S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	508					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TCAGTCACTGGGATGGTGAAG	0.502													22	43					0	0	0.012319	0	0
OR4X1	390113	broad.mit.edu	37	11	48285898	48285898	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:48285898C>T	uc010rht.1	+	1	486	c.486C>T	c.(484-486)TTC>TTT	p.F162F		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						TCCTGATTTTCCAGCTCCCGT	0.562													11	36					0	0	0.010729	0	0
OR4A47	403253	broad.mit.edu	37	11	48511046	48511046	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:48511046C>T	uc010rhx.1	+	1	702	c.702C>T	c.(700-702)GCC>GCT	p.A234A		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	234	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGCAAAAAGCCCTCTCAACCT	0.433													39	78					0	0	0.019004	0	0
FOLH1	2346	broad.mit.edu	37	11	49227623	49227623	+	Silent	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:49227623A>G	uc001ngy.2	-	2	481	c.220T>C	c.(220-222)TTA>CTA	p.L74L	FOLH1_uc001ngz.2_Silent_p.L74L|FOLH1_uc009yly.2_Silent_p.L59L|FOLH1_uc009ylz.2_Silent_p.L59L|FOLH1_uc009yma.2_5'UTR|FOLH1_uc001nha.2_Silent_p.L59L	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	74	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	ACTTACTATAAGAACTTCTTG	0.299													23	47					0	0	0.018920	0	0
LOC440040	440040	broad.mit.edu	37	11	49598212	49598212	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:49598212T>C	uc010rhy.1	+	2	803	c.325T>C	c.(325-327)TCC>CCC	p.S109P	LOC440040_uc009ymb.2_Missense_Mutation_p.S109P	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						TTCCTTCTGCTCCAAGAAGCC	0.493													13	18					0	0	0.016723	0	0
OR4C13	283092	broad.mit.edu	37	11	49974176	49974176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:49974176G>A	uc010rhz.1	+	1	202	c.202G>A	c.(202-204)GAT>AAT	p.D68N		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CTCCTTTATTGATGCCTGCTA	0.438													55	174					0	0	0.014410	0	0
OR5D13	390142	broad.mit.edu	37	11	55541798	55541798	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:55541798G>A	uc010ril.1	+	1	885	c.885G>A	c.(883-885)AGG>AGA	p.R295R		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				ACAGCCTTAGGAACAAAGATA	0.348													14	32					0	0	0.003163	0	0
OR8K3	219473	broad.mit.edu	37	11	56086282	56086282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:56086282C>T	uc010rjf.1	+	1	500	c.500C>T	c.(499-501)TCC>TTC	p.S167F		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TTTACTTTATCCTTCTGTGGC	0.373													23	57					0	0	0.021523	0	0
APLNR	187	broad.mit.edu	37	11	57004345	57004345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:57004345C>T	uc001njo.2	-	1	583	c.134G>A	c.(133-135)GGC>GAC	p.G45D	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	45	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						CAGACCGTTGCCCGTGGTGCC	0.597													19	73					0	0	0.010504	0	0
SMTNL1	219537	broad.mit.edu	37	11	57310192	57310192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:57310192G>A	uc009ymh.1	+	2	131	c.131G>A	c.(130-132)GGA>GAA	p.G44E		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	26										ovary(1)	1						GAGATGTCAGGAGGTGGAGCC	0.582													12	25					0	0	0.013537	0	0
GLYAT	10249	broad.mit.edu	37	11	58491920	58491920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:58491920G>A	uc001nnb.2	-	2	205	c.50C>T	c.(49-51)TCC>TTC	p.S17F	GLYAT_uc001nnc.2_Missense_Mutation_p.S17F	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	17					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	CTTCCTCAAGGATTTCTCCAG	0.448													40	120					0	0	0.014410	0	0
TMEM132A	54972	broad.mit.edu	37	11	60703610	60703610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:60703610C>T	uc001nqj.2	+	11	2496	c.2303C>T	c.(2302-2304)CCT>CTT	p.P768L	TMEM132A_uc001nqi.2_Missense_Mutation_p.P769L|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	768	Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GGGCTGCCCCCTGCCTCCACT	0.721													14	22					0	0	0.020292	0	0
CD5	921	broad.mit.edu	37	11	60886998	60886998	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:60886998G>A	uc009ynk.2	+	5	859	c.756G>A	c.(754-756)AGG>AGA	p.R252R		NM_014207	NP_055022	P06127	CD5_HUMAN	CD5 molecule precursor	252	Extracellular (Potential).|SRCR 2.				cell proliferation|cell recognition	integral to plasma membrane	scavenger receptor activity			ovary(1)	1		all_lung(304;5.94e-05)|Lung NSC(402;7.26e-05)		BRCA - Breast invasive adenocarcinoma(625;0.000946)|Lung(977;0.0086)|LUSC - Lung squamous cell carcinoma(625;0.0528)		ATTGCTTCAGGAAAATCAAGC	0.572													16	34					0	0	0.006122	0	0
SPDYC	387778	broad.mit.edu	37	11	64939939	64939939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:64939939G>A	uc010rnz.1	+	5	379	c.379G>A	c.(379-381)GGC>AGC	p.G127S		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	127	Speedy/Ringo box; Required for CDK- binding (By similarity).				cell cycle	nucleus	protein kinase binding				0						GGACCTGGAGGGCCCCAAATG	0.557													44	113					0	0	0.014410	0	0
SLC22A20	440044	broad.mit.edu	37	11	64985155	64985156	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:64985155_64985156CC>TT	uc010roc.1	+	3	632_633	c.629_630CC>TT	c.(628-630)TCC>TTT	p.S210F	SLC22A20_uc010rob.1_Missense_Mutation_p.S210F	NM_001004326	NP_001004326	A6NK97	S22AK_HUMAN	solute carrier family 22, member 20	210	Helical; (Potential).				ion transport	integral to membrane	transmembrane transporter activity			central_nervous_system(1)	1						AACTCCGTCTCCCTGGTGAGTC	0.649													11	22					0	0	0.004672	0	0
LTBP3	4054	broad.mit.edu	37	11	65315176	65315177	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:65315176_65315177CC>TT	uc001oej.2	-	13	2231_2232	c.1962_1963GG>AA	c.(1960-1965)GGGGGG>GGAAGG	p.G655R	LTBP3_uc001oeg.2_5'Flank|LTBP3_uc001oeh.2_Missense_Mutation_p.G85R|LTBP3_uc010roi.1_Missense_Mutation_p.G538R|LTBP3_uc001oei.2_Missense_Mutation_p.G655R|LTBP3_uc010roj.1_Missense_Mutation_p.G356R|LTBP3_uc010rok.1_Missense_Mutation_p.G566R	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	655	EGF-like 4; calcium-binding (Potential).|Cys-rich.					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						CACGAGCGCCCCCCGGCGCCCA	0.738													9	14					0	0	0.004672	0	0
DNAJB13	374407	broad.mit.edu	37	11	73681067	73681067	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:73681067A>G	uc001ouo.2	+	8	1610	c.859A>G	c.(859-861)AAA>GAA	p.K287E		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	287					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					CCCCACTAAGAAAGGGGATCT	0.547													51	119					0	0	0.014410	0	0
GDPD4	220032	broad.mit.edu	37	11	76982221	76982221	+	Silent	SNP	G	A	A	rs139482139		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:76982221G>A	uc001oyf.2	-	6	605	c.354C>T	c.(352-354)ATC>ATT	p.I118I		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	118	Helical; (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding	p.I118I(1)		skin(1)	1						GCCAGAAAAGGATAACCATCA	0.488													11	48					0	0	0.013537	0	0
ANKRD42	338699	broad.mit.edu	37	11	82951905	82951905	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:82951905A>T	uc001ozz.1	+	9	1462	c.1040A>T	c.(1039-1041)CAT>CTT	p.H347L	ANKRD42_uc010rsv.1_Missense_Mutation_p.H375L|ANKRD42_uc001paa.2_Missense_Mutation_p.H375L|ANKRD42_uc001pab.1_Missense_Mutation_p.H374L	NM_182603	NP_872409	Q8N9B4	ANR42_HUMAN	ankyrin repeat domain 42	347										skin(1)	1						TTTATAAGACATGGTGTTGAG	0.378													26	60					0	0	0.004656	0	0
TRIM49	57093	broad.mit.edu	37	11	89531591	89531591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:89531591C>T	uc001pdb.2	-	8	1395	c.1066G>A	c.(1066-1068)GGT>AGT	p.G356S		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	356	B30.2/SPRY.					intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TTACAGACACCAAAAGCCCAA	0.438													22	85					0	0	0.005443	0	0
FAT3	120114	broad.mit.edu	37	11	92087445	92087445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:92087445C>T	uc001pdj.3	+	1	2184	c.2167C>T	c.(2167-2169)CCA>TCA	p.P723S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	723	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TAGACAGGGACCATATTTTGA	0.398										TCGA Ovarian(4;0.039)			157	399					0	0	0.014410	0	0
CNTN5	53942	broad.mit.edu	37	11	99827607	99827607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:99827607C>T	uc001pga.2	+	8	1082	c.743C>T	c.(742-744)TCC>TTC	p.S248F	CNTN5_uc009ywv.1_Missense_Mutation_p.S248F|CNTN5_uc001pfz.2_Missense_Mutation_p.S248F|CNTN5_uc001pgb.2_Missense_Mutation_p.S174F	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	248	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CGGTTCATCTCCCAGGAGACA	0.423													15	43					0	0	0.007413	0	0
CNTN5	53942	broad.mit.edu	37	11	100168359	100168359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:100168359C>T	uc001pga.2	+	19	2656	c.2317C>T	c.(2317-2319)CCG>TCG	p.P773S	CNTN5_uc001pfz.2_Missense_Mutation_p.P773S|CNTN5_uc001pgb.2_Missense_Mutation_p.P699S|CNTN5_uc010ruk.1_Missense_Mutation_p.P44S	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	773	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ATCCACAGTTCCGAAGACAGC	0.423													3	9					0	0	0.004672	0	0
C11orf70	85016	broad.mit.edu	37	11	101946634	101946634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:101946634G>A	uc001pgp.2	+	5	494	c.466G>A	c.(466-468)GAA>AAA	p.E156K	C11orf70_uc001pgo.2_Silent_p.*100*|C11orf70_uc001pgq.2_Missense_Mutation_p.E118K	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	156										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		AGAAAAATATGAAATATTCAG	0.343													17	36					0	0	0.010504	0	0
MMP20	9313	broad.mit.edu	37	11	102480670	102480670	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:102480670G>A	uc001phc.2	-	4	628	c.615C>T	c.(613-615)TTC>TTT	p.F205F		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	205					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		CAGCATTGTCGAAATGTGTAT	0.473													14	55					0	0	0.007413	0	0
BCL9L	283149	broad.mit.edu	37	11	118773103	118773104	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:118773103_118773104GG>AA	uc001pug.2	-	6	2313_2314	c.1348_1349CC>TT	c.(1348-1350)CCC>TTC	p.P450F	BCL9L_uc009zal.2_Missense_Mutation_p.P445F	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	450	Pro-rich.|Necessary for interaction with CTNNB1 (By similarity).				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		CTGCTGGGGGGGAGGGGGGGCT	0.673													16	12					0	0	0.004672	0	0
CBL	867	broad.mit.edu	37	11	119103163	119103163	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:119103163G>A	uc001pwe.2	+	2	339	c.201G>A	c.(199-201)GTG>GTA	p.V67V		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	67	Cbl-PTB.|4H.				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		TGCAGGTGGTGCGGTTGTGTC	0.403									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				16	19					0	0	0.004990	0	0
TECTA	7007	broad.mit.edu	37	11	121008170	121008170	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:121008170C>T	uc010rzo.1	+	10	2982	c.2982C>T	c.(2980-2982)ATC>ATT	p.I994I		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	994	TIL 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		AGGAGTGCATCACATGTACAG	0.537													25	29					0	0	0.005443	0	0
VWA5A	4013	broad.mit.edu	37	11	124007781	124007781	+	Missense_Mutation	SNP	G	A	A	rs143375060	byFrequency	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:124007781G>A	uc001pzu.2	+	15	1894	c.1685G>A	c.(1684-1686)AGG>AAG	p.R562K	VWA5A_uc001pzt.2_Missense_Mutation_p.R562K	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	562										upper_aerodigestive_tract(1)|ovary(1)	2						ATGGGCCTCAGGGAGACTCCA	0.453													27	35					0	0	0.006320	0	0
OR8D2	283160	broad.mit.edu	37	11	124189235	124189235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:124189235G>A	uc010sah.1	-	1	859	c.859C>T	c.(859-861)CCT>TCT	p.P287S		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		TAGATTAGAGGATTCAGCATG	0.433													48	62					0	0	0.014410	0	0
CACNA1C	775	broad.mit.edu	37	12	2690876	2690876	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:2690876C>T	uc009zdu.1	+	14	2329	c.2016C>T	c.(2014-2016)CTC>CTT	p.L672L	CACNA1C_uc009zdv.1_Silent_p.L669L|CACNA1C_uc001qkb.2_Silent_p.L672L|CACNA1C_uc001qkc.2_Silent_p.L672L|CACNA1C_uc001qke.2_Silent_p.L672L|CACNA1C_uc001qkf.2_Silent_p.L672L|CACNA1C_uc001qjz.2_Silent_p.L672L|CACNA1C_uc001qkd.2_Silent_p.L672L|CACNA1C_uc001qkg.2_Silent_p.L672L|CACNA1C_uc009zdw.1_Silent_p.L672L|CACNA1C_uc001qkh.2_Silent_p.L672L|CACNA1C_uc001qkl.2_Silent_p.L672L|CACNA1C_uc001qkn.2_Silent_p.L672L|CACNA1C_uc001qko.2_Silent_p.L672L|CACNA1C_uc001qkp.2_Silent_p.L672L|CACNA1C_uc001qkr.2_Silent_p.L672L|CACNA1C_uc001qku.2_Silent_p.L672L|CACNA1C_uc001qkq.2_Silent_p.L672L|CACNA1C_uc001qks.2_Silent_p.L672L|CACNA1C_uc001qkt.2_Silent_p.L672L|CACNA1C_uc001qka.1_Silent_p.L207L|CACNA1C_uc001qki.1_Silent_p.L408L|CACNA1C_uc001qkj.1_Silent_p.L408L|CACNA1C_uc001qkk.1_Silent_p.L408L|CACNA1C_uc001qkm.1_Silent_p.L408L|CACNA1C_uc001qkw.2_5'Flank	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	672	II.|Helical; Name=S5 of repeat II; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGATGCAGCTCTTTGGAGGAA	0.418													18	25					0	0	0.007413	0	0
C12orf53	196500	broad.mit.edu	37	12	6806658	6806658	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:6806658G>A	uc001qqf.1	-	3	394	c.318C>T	c.(316-318)ATC>ATT	p.I106I	C12orf53_uc001qqg.1_Silent_p.I106I	NM_153685	NP_710152	Q8IYJ0	CL053_HUMAN	hypothetical protein LOC196500 precursor	106	Extracellular (Potential).					integral to membrane					0						GACCCCACACGATAGCCCAGG	0.622													11	19					0	0	0.008291	0	0
GPR162	27239	broad.mit.edu	37	12	6933632	6933632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:6933632G>A	uc001qqw.1	+	2	1103	c.568G>A	c.(568-570)GGA>AGA	p.G190R	GPR162_uc010sfn.1_Missense_Mutation_p.G190R|GPR162_uc001qqx.1_Intron|GPR162_uc009zfd.1_Intron|GPR162_uc001qqy.1_5'Flank	NM_019858	NP_062832	Q16538	GP162_HUMAN	G protein-coupled receptor 162 isoform 2	190	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCTACTTGGGGGAATTGTCAT	0.632													24	98					0	0	0.005443	0	0
CD163L1	283316	broad.mit.edu	37	12	7528442	7528442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:7528442C>T	uc001qsy.2	-	10	2566	c.2540G>A	c.(2539-2541)GGA>GAA	p.G847E	CD163L1_uc010sge.1_Missense_Mutation_p.G857E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	847	SRCR 8.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AAAGTGATCTCCCACAGAAAG	0.463													21	84					0	0	0.014323	0	0
CD163L1	283316	broad.mit.edu	37	12	7528513	7528513	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:7528513A>T	uc001qsy.2	-	10	2495	c.2469T>A	c.(2467-2469)GAT>GAA	p.D823E	CD163L1_uc010sge.1_Missense_Mutation_p.D833E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	823	SRCR 8.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						GAAGAGAGAAATCAGAATCAC	0.488													10	76					0	0	0.013537	0	0
C3AR1	719	broad.mit.edu	37	12	8212250	8212250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:8212250G>A	uc001qtv.1	-	2	624	c.532C>T	c.(532-534)CTC>TTC	p.L178F		NM_004054	NP_004045	Q16581	C3AR_HUMAN	complement component 3a receptor 1	178	Extracellular (Potential).				blood circulation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response	integral to plasma membrane	C3a anaphylatoxin receptor activity|complement component C3a receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)	1				Kidney(36;0.0893)		GAGCTGGAGAGACCAAATTTG	0.418													51	52					0	0	0.014410	0	0
LOC642846	642846	broad.mit.edu	37	12	9463786	9463786	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:9463786G>A	uc010sgp.1	+	21		c.2415G>A			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						GTGGTTTCTGGAGGGGTGGTC	0.622													24	33					0	0	0.007291	0	0
DDX12	440081	broad.mit.edu	37	12	9573211	9573211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:9573211C>T	uc010sgs.1	-	21	2297	c.2102G>A	c.(2101-2103)GGA>GAA	p.G701E	DDX12_uc001qvx.3_5'Flank|DDX12_uc001qvy.1_5'Flank	NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						GACCACCCCTCCAGAAACCAC	0.478													5	38					0	0	0.001168	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18573874	18573874	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:18573874G>A	uc001rdt.2	+	16	2309	c.2193_splice	c.e16-1	p.S731_splice	PIK3C2G_uc010sia.1_Splice_Site|PIK3C2G_uc010sib.1_Splice_Site_p.S772_splice|PIK3C2G_uc010sic.1_Splice_Site_p.S550_splice	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma						cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CTGTGTATTAGTTTTCCAGAT	0.373													27	41					0	0	0.009535	0	0
ARNTL2	56938	broad.mit.edu	37	12	27573445	27573445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:27573445G>A	uc001rht.1	+	17	1909	c.1891G>A	c.(1891-1893)GAC>AAC	p.D631N	ARNTL2_uc001rhw.2_Missense_Mutation_p.D594N|ARNTL2_uc010sjp.1_3'UTR|ARNTL2_uc001rhu.1_Missense_Mutation_p.D617N|ARNTL2_uc009zji.1_Missense_Mutation_p.D597N|ARNTL2_uc001rhv.1_Missense_Mutation_p.D583N|uc001rhx.2_Intron	NM_020183	NP_064568	Q8WYA1	BMAL2_HUMAN	aryl hydrocarbon receptor nuclear	631					circadian rhythm|entrainment of circadian clock|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|skin(1)	2	Colorectal(261;0.0847)|Lung SC(9;0.184)					GGACTTCAGTGACATCCAGTG	0.418													61	47					0	0	0.014410	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43837663	43837663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:43837663G>A	uc010skx.1	-	16	2221	c.2221C>T	c.(2221-2223)CCC>TCC	p.P741S		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	741	Spacer.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GCTCCTGCGGGAATCTTTACA	0.373													33	61					0	0	0.021022	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50188753	50188753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:50188753C>T	uc009zlk.2	-	8	3092	c.2890G>A	c.(2890-2892)GAG>AAG	p.E964K	NCKAP5L_uc001rvc.3_Missense_Mutation_p.E168K|NCKAP5L_uc001rvb.2_Missense_Mutation_p.E557K	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	960	Potential.									central_nervous_system(1)	1						TTGAGGCTCTCGGCCTCCAGC	0.672													4	3					0	0	0.009096	0	0
KRT81	3887	broad.mit.edu	37	12	52681839	52681839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:52681839C>T	uc001sab.2	-	5	879	c.829G>A	c.(829-831)GAG>AAG	p.E277K	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_Intron	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	277	Rod.|Coil 2.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCTTAATCTCGGCAATGATG	0.587													25	39					0	0	0.018920	0	0
OR9K2	441639	broad.mit.edu	37	12	55524101	55524101	+	Silent	SNP	T	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:55524101T>A	uc010spe.1	+	1	549	c.549T>A	c.(547-549)ATT>ATA	p.I183I		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	183	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GCTCAGTTATTCAGACTAGCA	0.453													36	35					0	0	0.019004	0	0
SHMT2	6472	broad.mit.edu	37	12	57626237	57626237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:57626237C>T	uc001snf.1	+	6	606	c.596C>T	c.(595-597)CCC>CTC	p.P199L	SHMT2_uc001sng.1_Missense_Mutation_p.P95L|SHMT2_uc001snh.1_Missense_Mutation_p.P38L|SHMT2_uc009zpk.1_Intron|SHMT2_uc001sni.1_Missense_Mutation_p.P178L|SHMT2_uc010srg.1_Missense_Mutation_p.P208L|SHMT2_uc001snj.1_Missense_Mutation_p.P103L|SHMT2_uc010srh.1_Missense_Mutation_p.P178L|SHMT2_uc001snk.1_Missense_Mutation_p.P103L|SHMT2_uc010sri.1_Missense_Mutation_p.P178L|SHMT2_uc001snl.2_Missense_Mutation_p.P103L|SHMT2_uc010srj.1_5'Flank	NM_005412	NP_005403	P34897	GLYM_HUMAN	serine hydroxymethyltransferase 2	199						microtubule cytoskeleton|mitochondrial nucleoid	glycine hydroxymethyltransferase activity|methyltransferase activity			ovary(1)|central_nervous_system(1)	2					Glycine(DB00145)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	TCTGTCCAGCCCAAAACTGGC	0.587													42	48					0	0	0.009718	0	0
LEMD3	23592	broad.mit.edu	37	12	65634721	65634721	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:65634721T>C	uc001ssl.1	+	9	2165	c.2159T>C	c.(2158-2160)GTT>GCT	p.V720A	LEMD3_uc009zqo.1_Missense_Mutation_p.V719A	NM_014319	NP_055134	Q9Y2U8	MAN1_HUMAN	LEM domain containing 3	720	Interaction with SMAD1, SMAD2, SMAD3 and SMAD5.|				negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway	integral to nuclear inner membrane|membrane fraction	DNA binding|nucleotide binding|protein binding			central_nervous_system(3)|ovary(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0104)		GATAGAGCTGTTGACTTCCTT	0.408													18	15					0	0	0.008871	0	0
PTPRB	5787	broad.mit.edu	37	12	70983782	70983782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:70983782C>T	uc001swb.3	-	6	1388	c.1358G>A	c.(1357-1359)GGA>GAA	p.G453E	PTPRB_uc010sto.1_Missense_Mutation_p.G453E|PTPRB_uc010stp.1_Intron|PTPRB_uc001swc.3_Missense_Mutation_p.G671E|PTPRB_uc001swa.3_Missense_Mutation_p.G671E|PTPRB_uc001swd.3_Missense_Mutation_p.G670E|PTPRB_uc009zrr.1_Missense_Mutation_p.G550E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	453	Fibronectin type-III 5.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CTTCAAATTTCCACTCTCAAC	0.453											OREG0021990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	65					0	0	0.006999	0	0
KERA	11081	broad.mit.edu	37	12	91449444	91449444	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:91449444C>T	uc001tbl.2	-	2	1234	c.615G>A	c.(613-615)AGG>AGA	p.R205R		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	205	LRR 6.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						GAGGCATATTCCTCAGGGCAT	0.368													33	39					0	0	0.015359	0	0
ANKS1B	56899	broad.mit.edu	37	12	100219094	100219094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:100219094C>T	uc001tge.1	-	2	625	c.208G>A	c.(208-210)GGA>AGA	p.G70R	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Missense_Mutation_p.G70R	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	70	ANK 2.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TACTTATGTCCATTTAAGGCT	0.438													9	8					0	0	0.010729	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100453084	100453084	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:100453084G>A	uc001tgq.2	-	14	2200	c.1971C>T	c.(1969-1971)TTC>TTT	p.F657F	UHRF1BP1L_uc001tgp.2_Silent_p.F307F	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	657										ovary(2)	2						CATGTCTCTGGAAAATTGGAT	0.308													19	15					0	0	0.007413	0	0
STAB2	55576	broad.mit.edu	37	12	104046342	104046342	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:104046342G>A	uc001tjw.2	+	12	1452	c.1266G>A	c.(1264-1266)GAG>GAA	p.E422E		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	422	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGGTAAATGAGCTTTTGGTGG	0.328													9	15					0	0	0.008291	0	0
DTX1	1840	broad.mit.edu	37	12	113496249	113496249	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:113496249G>A	uc001tuk.1	+	1	588	c.252G>A	c.(250-252)CAG>CAA	p.Q84Q		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	84	WWE 1.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						AGTTTCGCCAGGACACAGGTG	0.612													31	41					0	0	0.009535	0	0
RASAL1	8437	broad.mit.edu	37	12	113553068	113553068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:113553068C>T	uc001tum.1	-	12	1298	c.1005G>A	c.(1003-1005)ATG>ATA	p.M335I	RASAL1_uc010syp.1_Missense_Mutation_p.M335I|RASAL1_uc001tul.2_Missense_Mutation_p.M335I|RASAL1_uc001tun.1_Missense_Mutation_p.M335I|RASAL1_uc010syq.1_Missense_Mutation_p.M335I|RASAL1_uc001tuo.3_Missense_Mutation_p.M335I|RASAL1_uc010syr.1_Missense_Mutation_p.M335I	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	335	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						TGTTGGGGTCCACTGGGAGGA	0.562													40	55					0	0	0.009718	0	0
NCOR2	9612	broad.mit.edu	37	12	124826485	124826485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:124826485G>A	uc010tba.1	-	34	5213	c.5096C>T	c.(5095-5097)ACC>ATC	p.T1699I	NCOR2_uc010tay.1_Missense_Mutation_p.T1698I|NCOR2_uc010taz.1_Missense_Mutation_p.T1682I|NCOR2_uc010tbb.1_Missense_Mutation_p.T1691I|NCOR2_uc010tbc.1_Missense_Mutation_p.T1681I|NCOR2_uc010tax.1_5'Flank	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1699					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CTGCTGCGAGGTGATGTAGTC	0.647													28	41					0	0	0.013726	0	0
TMEM132D	121256	broad.mit.edu	37	12	129563237	129563237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:129563237C>T	uc009zyl.1	-	8	2285	c.1957G>A	c.(1957-1959)GAA>AAA	p.E653K	TMEM132D_uc001uia.2_Missense_Mutation_p.E191K	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	653	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		ATGGTCTTTTCAGCGAGGATG	0.572													28	37					0	0	0.008361	0	0
PIWIL1	9271	broad.mit.edu	37	12	130830321	130830321	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr12:130830321C>T	uc001uik.2	+	4	304	c.214C>T	c.(214-216)CAG>TAG	p.Q72*	PIWIL1_uc001uij.1_Nonsense_Mutation_p.Q72*	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	72					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		TGCTGGATTTCAGGAGTTATC	0.373													12	25					0	0	0.013537	0	0
LOC284232	284232	broad.mit.edu	37	13	19444955	19444955	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:19444955G>A	uc010tcj.1	-	1		c.1155C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AAATAACAAGGAAATCACTCC	0.333													4	17					0	0	0.009096	0	0
SGCG	6445	broad.mit.edu	37	13	23808834	23808834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:23808834G>A	uc001uom.2	+	3	435	c.280G>A	c.(280-282)GAA>AAA	p.E94K	SGCG_uc009zzv.2_Missense_Mutation_p.E94K|SGCG_uc009zzw.2_Missense_Mutation_p.E94K	NM_000231	NP_000222	Q13326	SGCG_HUMAN	gamma sarcoglycan	94	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0		all_cancers(29;4.34e-23)|all_epithelial(30;4.4e-19)|all_lung(29;2.45e-18)|Lung SC(185;0.0228)|Breast(139;0.188)		all cancers(112;0.00255)|Epithelial(112;0.0129)|OV - Ovarian serous cystadenocarcinoma(117;0.0365)|Lung(94;0.205)		GTATGCCAAAGAAATACACTC	0.333													22	60					0	0	0.016522	0	0
SACS	26278	broad.mit.edu	37	13	23906647	23906647	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:23906647G>A	uc001uon.2	-	10	11957	c.11368C>T	c.(11368-11370)CAG>TAG	p.Q3790*	SACS_uc001uoo.2_Nonsense_Mutation_p.Q3643*|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3790					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CCTCGCAACTGAAAACGAAAT	0.383													18	39					0	0	0.007413	0	0
SACS	26278	broad.mit.edu	37	13	23912862	23912862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:23912862G>A	uc001uon.2	-	10	5742	c.5153C>T	c.(5152-5154)TCC>TTC	p.S1718F	SACS_uc001uoo.2_Missense_Mutation_p.S1571F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1718					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GGAAGAGCAGGATTTTTTTTT	0.358													8	34					0	0	0.004482	0	0
LOC374491	374491	broad.mit.edu	37	13	25161397	25161397	+	RNA	SNP	C	G	G	rs3874227	by1000genomes	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:25161397C>G	uc001upm.2	+	8		c.921C>G			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TGAAACATCTCTACAACTGGA	0.343													3	37					0	0	0.014758	0	0
RNF17	56163	broad.mit.edu	37	13	25453337	25453337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:25453337G>A	uc001upr.2	+	35	4827	c.4786G>A	c.(4786-4788)GAA>AAA	p.E1596K	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E1592K|RNF17_uc001ups.2_Missense_Mutation_p.E1535K|RNF17_uc010aac.2_Missense_Mutation_p.E788K|RNF17_uc010aad.2_Missense_Mutation_p.E606K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1596					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TCCAGCACCAGAACAGATAGT	0.408													13	23					0	0	0.003163	0	0
NBEA	26960	broad.mit.edu	37	13	35684971	35684971	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:35684971T>A	uc001uvb.2	+	14	2064	c.1858T>A	c.(1858-1860)TTG>ATG	p.L620M		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	620						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ATACACATATTTGTCTGCTGA	0.333													7	22					0	0	0.003080	0	0
KBTBD7	84078	broad.mit.edu	37	13	41766536	41766536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:41766536G>A	uc001uxw.1	-	1	2167	c.1858C>T	c.(1858-1860)CCT>TCT	p.P620S	uc001uxv.1_Intron	NM_032138	NP_115514	Q8WVZ9	KBTB7_HUMAN	kelch repeat and BTB (POZ) domain containing 7	620							protein binding			ovary(1)	1		Lung NSC(96;0.000105)|Breast(139;0.00715)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.21e-09)|Epithelial(112;6.99e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000196)|GBM - Glioblastoma multiforme(144;0.000857)|BRCA - Breast invasive adenocarcinoma(63;0.0669)		AGGCAGGAAGGATAAACACGA	0.428													24	54					0	0	0.014323	0	0
KBTBD7	84078	broad.mit.edu	37	13	41768268	41768268	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:41768268G>C	uc001uxw.1	-	1	435	c.126C>G	c.(124-126)GAC>GAG	p.D42E	uc001uxv.1_Intron	NM_032138	NP_115514	Q8WVZ9	KBTB7_HUMAN	kelch repeat and BTB (POZ) domain containing 7	42							protein binding			ovary(1)	1		Lung NSC(96;0.000105)|Breast(139;0.00715)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.21e-09)|Epithelial(112;6.99e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000196)|GBM - Glioblastoma multiforme(144;0.000857)|BRCA - Breast invasive adenocarcinoma(63;0.0669)		AATGGGCCGTGTCCTTTAACT	0.642													3	115					0	0	0.004672	0	0
THSD1	55901	broad.mit.edu	37	13	52971369	52971369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:52971369G>A	uc001vgo.2	-	3	1564	c.1019C>T	c.(1018-1020)ACA>ATA	p.T340I	THSD1_uc001vgp.2_Missense_Mutation_p.T340I|THSD1_uc010tgz.1_Intron|THSD1_uc010aea.2_Intron	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	340	Extracellular (Potential).|TSP type-1.					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		ATACAAACCTGTATTTCTCTG	0.313													14	40					0	0	0.004007	0	0
GPC6	10082	broad.mit.edu	37	13	93879743	93879743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:93879743C>T	uc001vlt.2	+	1	666	c.34C>T	c.(34-36)CTC>TTC	p.L12F	GPC6_uc010tig.1_Missense_Mutation_p.L12F	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	12						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				GATTCTTCCCCTCTTGGGGCT	0.642											OREG0022460	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	58					0	0	0.012213	0	0
TMTC4	84899	broad.mit.edu	37	13	101289912	101289912	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:101289912G>A	uc001vou.2	-	8	982	c.822C>T	c.(820-822)ACC>ACT	p.T274T	TMTC4_uc001vot.2_Silent_p.T293T|TMTC4_uc010tja.1_Silent_p.T163T|TMTC4_uc001vov.1_Silent_p.T19T|TMTC4_uc001vow.1_Silent_p.T57T	NM_001079669	NP_001073137	Q5T4D3	TMTC4_HUMAN	transmembrane and tetratricopeptide repeat	274	Helical; (Potential).					integral to membrane	binding			ovary(2)|breast(1)	3	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					AGGTGAGCAGGGTCATTCTGA	0.607													27	77					0	0	0.009535	0	0
SLC10A2	6555	broad.mit.edu	37	13	103698526	103698526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:103698526G>A	uc001vpy.3	-	6	1601	c.1004C>T	c.(1003-1005)TCG>TTG	p.S335L		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	335	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTTATAAAACGATGACTCTGG	0.373													22	33					0	0	0.018920	0	0
MYO16	23026	broad.mit.edu	37	13	109707473	109707473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:109707473G>A	uc001vqt.1	+	26	3188	c.3062G>A	c.(3061-3063)AGG>AAG	p.R1021K	MYO16_uc010agk.1_Missense_Mutation_p.R1043K|MYO16_uc001vqu.1_Missense_Mutation_p.R821K|MYO16_uc010tjh.1_Missense_Mutation_p.R533K	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1021	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TCACAACTCAGGGTTAGTGAC	0.303													17	29					0	0	0.008871	0	0
FAM70B	348013	broad.mit.edu	37	13	114472075	114472075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr13:114472075G>A	uc001vuh.2	+	3	221	c.194G>A	c.(193-195)GGC>GAC	p.G65D		NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	65	Helical; (Potential).					integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			TTTTAGCTCGGCTTTGGATCT	0.433													31	59					0	0	0.012213	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215759	20215759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:20215759C>T	uc010tkt.1	+	1	173	c.173C>T	c.(172-174)TCT>TTT	p.S58F		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	58	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGCTCCAATCTCCTATGTAT	0.408													42	307					0	0	0.011902	0	0
OR4K2	390431	broad.mit.edu	37	14	20345076	20345076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:20345076C>T	uc001vwh.1	+	1	650	c.650C>T	c.(649-651)TCA>TTA	p.S217L		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTATTTAATTCATATGTTATT	0.383													35	359					0	0	0.021022	0	0
OR4K13	390433	broad.mit.edu	37	14	20502527	20502527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:20502527G>A	uc010tkz.1	-	1	391	c.391C>T	c.(391-393)CAT>TAT	p.H131Y		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		GTCATGTAATGGAGGGGTTTG	0.468													28	69					0	0	0.005443	0	0
OR11G2	390439	broad.mit.edu	37	14	20665781	20665781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:20665781C>T	uc010tlb.1	+	1	287	c.287C>T	c.(286-288)CCC>CTC	p.P96L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	96	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		CTCCACGCCCCCATGTACATC	0.522													21	65					0	0	0.021523	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21794283	21794283	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:21794283C>T	uc001wag.2	+	16	2661	c.2661C>T	c.(2659-2661)GGC>GGT	p.G887G	RPGRIP1_uc001wah.2_Silent_p.G529G|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001wak.2_Silent_p.G362G|RPGRIP1_uc010aim.2_Silent_p.G270G|RPGRIP1_uc001wal.2_Silent_p.G246G|RPGRIP1_uc001wam.2_Silent_p.G204G	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	887	C2.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		CGTATCTTGGCCGAGCCCGAG	0.483													10	23					0	0	0.008291	0	0
OR10G3	26533	broad.mit.edu	37	14	22038755	22038755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:22038755C>T	uc010tmb.1	-	1	121	c.121G>A	c.(121-123)GGA>AGA	p.G41R		NM_001005465	NP_001005465	Q8NGC4	O10G3_HUMAN	olfactory receptor, family 10, subfamily G,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;0.000987)			GBM - Glioblastoma multiforme(265;0.0139)		AGCAGGTTTCCCAGCTGAGTC	0.448													12	22					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	14	22111558	22111558	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:22111558G>A	uc001wbk.3	+	2	162	c.129G>A	c.(127-129)GAG>GAA	p.E43E						SubName: Full=Putative uncharacterized protein ENSP00000374930;																		AGCCCACTGAGATGACAGCTA	0.493													19	61					0	0	0.007413	0	0
ADCY4	196883	broad.mit.edu	37	14	24787742	24787742	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:24787742G>A	uc001wov.2	-	25	3120	c.3114C>T	c.(3112-3114)TCC>TCT	p.S1038S	ADCY4_uc001wow.2_Silent_p.S1038S|ADCY4_uc010toh.1_Silent_p.S724S|ADCY4_uc001wox.2_Silent_p.S1038S|ADCY4_uc001woy.2_Silent_p.S1038S	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	1038	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		TGTAGCCCAGGGACTGTAGGG	0.577													20	51					0	0	0.014323	0	0
NPAS3	64067	broad.mit.edu	37	14	34269586	34269586	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:34269586C>T	uc001wru.2	+	12	2137	c.2073C>T	c.(2071-2073)TTC>TTT	p.F691F	NPAS3_uc001wrs.2_Silent_p.F678F|NPAS3_uc001wrt.2_Silent_p.F659F|NPAS3_uc001wrv.2_Silent_p.F661F	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	691					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		CTGAGCACTTCCCGTCCCCGC	0.597													27	60					0	0	0.005443	0	0
SAV1	60485	broad.mit.edu	37	14	51132229	51132229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:51132229G>A	uc001wyg.1	-	3	364	c.203C>T	c.(202-204)TCA>TTA	p.S68L	SAV1_uc001wyh.1_Missense_Mutation_p.S68L	NM_021818	NP_068590	Q9H4B6	SAV1_HUMAN	WW45 protein	68					hippo signaling cascade	cytoplasm|nucleus	identical protein binding			breast(1)	1	all_epithelial(31;0.000611)|Breast(41;0.0333)					CTGGTTTCTTGAAACTACATC	0.403													6	21					0	0	0.001984	0	0
ERO1L	30001	broad.mit.edu	37	14	53118997	53118997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:53118997G>A	uc001wzv.2	-	13	1311	c.1085C>T	c.(1084-1086)TCA>TTA	p.S362L	ERO1L_uc001wzw.2_RNA|ERO1L_uc010aof.2_RNA	NM_014584	NP_055399	Q96HE7	ERO1A_HUMAN	ERO1-like precursor	362					chaperone mediated protein folding requiring cofactor|electron transport chain|protein thiol-disulfide exchange|response to temperature stimulus|transport	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome	disulfide oxidoreductase activity|flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor				0	Breast(41;0.226)					AGCAAAAAATGAATTCTCATC	0.279													19	52					0	0	0.010504	0	0
ESR2	2100	broad.mit.edu	37	14	64749369	64749369	+	Missense_Mutation	SNP	G	A	A	rs141516067		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:64749369G>A	uc001xha.1	-	2	803	c.335C>T	c.(334-336)TCG>TTG	p.S112L	ESR2_uc001xgu.2_Missense_Mutation_p.S112L|ESR2_uc001xgv.2_Missense_Mutation_p.S112L|ESR2_uc001xgw.2_RNA|ESR2_uc001xgx.2_Missense_Mutation_p.S112L|ESR2_uc001xgy.1_Missense_Mutation_p.S112L|ESR2_uc001xgz.1_Missense_Mutation_p.S112L|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Missense_Mutation_p.S112L	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	112	Modulating.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	GTGTTCTAGCGATCTTGCTTC	0.448													24	26					0	0	0.018920	0	0
LTBP2	4053	broad.mit.edu	37	14	75022267	75022267	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:75022267G>A	uc001xqa.2	-	4	1347	c.960C>T	c.(958-960)GGC>GGT	p.G320G		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	320					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		TCTGCTCAAGGCCTGGTCCCG	0.647													31	31					0	0	0.012213	0	0
NEK9	91754	broad.mit.edu	37	14	75587839	75587839	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:75587839T>A	uc001xrl.2	-	3	590	c.436A>T	c.(436-438)AAG>TAG	p.K146*		NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	146	Protein kinase.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		TCAAACAACTTGTCCTTCTGA	0.363													12	22					0	0	0.010729	0	0
KIAA1409	57578	broad.mit.edu	37	14	94173080	94173080	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:94173080C>T	uc001ybv.1	+	48	7356	c.7273C>T	c.(7273-7275)CAG>TAG	p.Q2425*	KIAA1409_uc001ybs.1_Nonsense_Mutation_p.Q2403*	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2580						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GCTTCGCCTCCAGGCTATTCA	0.587													23	35					0	0	0.021523	0	0
KIF26A	26153	broad.mit.edu	37	14	104642925	104642925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:104642925C>T	uc001yos.3	+	12	3800	c.3800C>T	c.(3799-3801)TCC>TTC	p.S1267F		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	1267					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		ACACTTGGCTCCCCCCGGCTG	0.697													17	21					0	0	0.004990	0	0
AHNAK2	113146	broad.mit.edu	37	14	105411703	105411703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:105411703G>A	uc010axc.1	-	7	10205	c.10085C>T	c.(10084-10086)TCT>TTT	p.S3362F	AHNAK2_uc001ypx.2_Missense_Mutation_p.S3262F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3362						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CAGGTCCACAGAAGGGAGCTG	0.672													80	103					0	0	0.014410	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418651	105418651	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:105418651A>C	uc010axc.1	-	7	3257	c.3137T>G	c.(3136-3138)CTC>CGC	p.L1046R	AHNAK2_uc001ypx.2_Missense_Mutation_p.L946R	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1046						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CTGAATGCTGAGGTCAGTGGT	0.617													55	79					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106091552	106091552	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr14:106091552G>A	uc010tyt.1	-	3647		c.61956C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GTCCCCCCAGGAACTCAGGTG	0.627													18	21					0	0	0.006122	0	0
HERC2P2	400322	broad.mit.edu	37	15	23300123	23300123	+	RNA	SNP	T	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:23300123T>G	uc001yvq.2	-	4		c.1382A>C			HERC2P2_uc001yvo.3_RNA|HERC2P2_uc001yvp.3_RNA					Homo sapiens mRNA for KIAA0393 protein, partial cds.												0						CTTCAAATCCTGGGCTCGAAG	0.617													5	15					0	0	0.001168	0	0
TRPM1	4308	broad.mit.edu	37	15	31294925	31294925	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:31294925G>A	uc001zfm.2	-	27	4040	c.3912C>T	c.(3910-3912)TTC>TTT	p.F1304F	TRPM1_uc010azy.2_Silent_p.F1211F|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1304	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CCTTTATACGGAAGGAACAGG	0.453													26	78					0	0	0.005443	0	0
RYR3	6263	broad.mit.edu	37	15	34109108	34109108	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:34109108G>A	uc001zhi.2	+	75	10618	c.10548G>A	c.(10546-10548)TGG>TGA	p.W3516*	RYR3_uc010bar.2_Nonsense_Mutation_p.W3511*	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3516					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGAGATTTTGGATAGAAACAG	0.458													6	16					0	0	0.001984	0	0
TMEM85	51234	broad.mit.edu	37	15	34520784	34520784	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:34520784C>T	uc001zhq.2	+	4	581	c.510C>T	c.(508-510)CCC>CCT	p.P170P	TMEM85_uc001zhr.2_RNA|TMEM85_uc001zhs.2_Intron|TMEM85_uc010bat.2_Intron	NM_016454	NP_057538	Q5J8M3	TMM85_HUMAN	transmembrane protein 85	170					apoptosis	integral to membrane					0		all_lung(180;1.15e-06)		all cancers(64;1.03e-17)|GBM - Glioblastoma multiforme(113;3.33e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)|Lung(196;0.217)		TCATTGAGCCCCCTGAGGTAA	0.443													4	132					0	0	0.014758	0	0
AQR	9716	broad.mit.edu	37	15	35202393	35202393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:35202393G>A	uc001ziv.2	-	17	1787	c.1606C>T	c.(1606-1608)CGT>TGT	p.R536C		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	536						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		ACATCTGCACGAACTCGGGTT	0.448													39	97					0	0	0.009718	0	0
RTF1	23168	broad.mit.edu	37	15	41745236	41745236	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:41745236C>T	uc001zny.2	+	3	459	c.447C>T	c.(445-447)GCC>GCT	p.A149A		NM_015138	NP_055953	Q92541	RTF1_HUMAN	Paf1/RNA polymerase II complex component	149	Ser-rich.				histone modification|regulation of transcription, DNA-dependent|transcription initiation, DNA-dependent	nucleoplasm	protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(109;1.79e-19)|all_epithelial(112;8.18e-17)|Lung NSC(122;3.16e-11)|all_lung(180;8.14e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;1.15e-16)|GBM - Glioblastoma multiforme(113;1.81e-06)|BRCA - Breast invasive adenocarcinoma(123;0.119)		AGAGCTCAGCCCCTGAGGAAG	0.517													13	33					0	0	0.016723	0	0
MGA	23269	broad.mit.edu	37	15	41961893	41961893	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:41961893C>T	uc001zog.1	+	2	892	c.801C>T	c.(799-801)CCC>CCT	p.P267P	MGA_uc010ucy.1_Silent_p.P267P|MGA_uc010ucz.1_Silent_p.P267P	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	267						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		ATAATAAGCCCCAGAGAGATG	0.428													7	19					0	0	0.001984	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42373300	42373300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:42373300C>T	uc001zox.2	-	12	1084	c.989G>A	c.(988-990)GGA>GAA	p.G330E		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	330	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		CCGGGCACCTCCTCCTGTGGC	0.602													21	45					0	0	0.010504	0	0
MAP1A	4130	broad.mit.edu	37	15	43820842	43820842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:43820842G>A	uc001zrt.2	+	4	7638	c.7171G>A	c.(7171-7173)GGG>AGG	p.G2391R		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2391						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CTGGGAACGTGGGGCCTGGCC	0.667													8	13					0	0	0.003080	0	0
GATM	2628	broad.mit.edu	37	15	45660331	45660331	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:45660331G>A	uc001zvc.2	-	4	941	c.612C>T	c.(610-612)TTC>TTT	p.F204F	GATM_uc001zvb.2_Silent_p.F75F|GATM_uc010uev.1_Silent_p.F257F	NM_001482	NP_001473	P50440	GATM_HUMAN	L-arginine:glycine amidinotransferase precursor	204					creatine biosynthetic process	mitochondrial inner membrane|mitochondrial intermembrane space	glycine amidinotransferase activity|protein binding				0		all_cancers(109;1.25e-09)|all_epithelial(112;5.56e-08)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.87e-16)|GBM - Glioblastoma multiforme(94;1.97e-06)	Creatine(DB00148)|Glycine(DB00145)|L-Ornithine(DB00129)	CGCCACGGTGGAAGTAGTCTT	0.473													11	30					0	0	0.013537	0	0
SEMA6D	80031	broad.mit.edu	37	15	48063526	48063526	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:48063526C>T	uc010bek.2	+	19	3126	c.2766C>T	c.(2764-2766)GTC>GTT	p.V922V	SEMA6D_uc001zvw.2_Silent_p.V860V|SEMA6D_uc001zvy.2_Silent_p.V922V|SEMA6D_uc001zvz.2_Silent_p.V866V|SEMA6D_uc001zwa.2_3'UTR|SEMA6D_uc001zwb.2_Silent_p.V860V|SEMA6D_uc001zwc.2_Silent_p.V847V	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	922	Cytoplasmic (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		CACCTAAAGTCCCTAACCGGG	0.532													26	88					0	0	0.005443	0	0
ATP8B4	79895	broad.mit.edu	37	15	50254215	50254215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:50254215C>T	uc001zxu.2	-	14	1388	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K	ATP8B4_uc010ber.2_Missense_Mutation_p.E289K|ATP8B4_uc010ufd.1_Missense_Mutation_p.E289K|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	416	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TCATGTACTTCACCTGACAAA	0.269													8	19					0	0	0.006214	0	0
MYO5C	55930	broad.mit.edu	37	15	52498025	52498025	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:52498025G>A	uc010bff.2	-	37	4662	c.4525C>T	c.(4525-4527)CAA>TAA	p.Q1509*	MYO5C_uc010uga.1_RNA|uc002abv.2_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1509	Dilute.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		ATTATCGGTTGGATATTCTTT	0.284													12	27					0	0	0.013537	0	0
GCNT3	9245	broad.mit.edu	37	15	59910965	59910965	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:59910965C>T	uc002age.2	+	3	977	c.528C>T	c.(526-528)GTC>GTT	p.V176V	GCNT3_uc002agd.2_Silent_p.V176V	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	176	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						AAGAGGCGGTCAAAGCAATTA	0.473													30	63					0	0	0.006320	0	0
VPS13C	54832	broad.mit.edu	37	15	62207918	62207918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:62207918C>T	uc002agz.2	-	61	8433	c.8359G>A	c.(8359-8361)GAA>AAA	p.E2787K	VPS13C_uc002aha.2_Missense_Mutation_p.E2744K|VPS13C_uc002ahb.1_Missense_Mutation_p.E2787K|VPS13C_uc002ahc.1_Missense_Mutation_p.E2744K|VPS13C_uc002ahd.1_Missense_Mutation_p.E164K	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2787					protein localization					ovary(2)	2						TGAATATCTTCTGAACGATAC	0.393													13	41					0	0	0.016723	0	0
HCN4	10021	broad.mit.edu	37	15	73636054	73636054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:73636054G>A	uc002avp.2	-	2	1875	c.881C>T	c.(880-882)CCC>CTC	p.P294L		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	294	Helical; Name=Segment S2; (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GACAATCCAGGGTGTGGTGTT	0.502													17	55					0	0	0.004007	0	0
CYP11A1	1583	broad.mit.edu	37	15	74635368	74635368	+	Missense_Mutation	SNP	C	T	T	rs6161	byFrequency	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:74635368C>T	uc002axt.2	-	5	1095	c.940G>A	c.(940-942)GAG>AAG	p.E314K	CYP11A1_uc002axs.2_Missense_Mutation_p.E156K|CYP11A1_uc010bjm.1_Missense_Mutation_p.E156K|CYP11A1_uc010bjn.1_Intron|CYP11A1_uc010bjo.1_Missense_Mutation_p.E314K|CYP11A1_uc010bjp.1_Intron|CYP11A1_uc010ulj.1_Missense_Mutation_p.E94K	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	314					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	TTGATGTCCTCGAAGGACATC	0.577													34	118					0	0	0.019004	0	0
CYP1A2	1544	broad.mit.edu	37	15	75047346	75047346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:75047346G>A	uc002ayr.1	+	7	1532	c.1468G>A	c.(1468-1470)GAC>AAC	p.D490N		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	490					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	CGTGAAAGTCGACCTGACCCC	0.602													25	73					0	0	0.018920	0	0
LMAN1L	79748	broad.mit.edu	37	15	75105204	75105204	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:75105204G>A	uc002ayt.1	+	1	11	c.9G>A	c.(7-9)GCG>GCA	p.A3A	LMAN1L_uc010bkd.2_5'UTR|LMAN1L_uc010ulo.1_5'UTR|LMAN1L_uc010bke.1_Silent_p.A3A	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	3						ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						CGATGCCGGCGGTCAGTGGTC	0.647													45	57					0	0	0.013114	0	0
Unknown	0	broad.mit.edu	37	15	76074431	76074431	+	Missense_Mutation	SNP	C	T	T	rs149323153	by1000genomes	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:76074431C>T	uc010umm.1	+	8	610	c.533C>T	c.(532-534)TCG>TTG	p.S178L	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CTCCAGTCCTCGAGCTGCAGA	0.547													15	58					0	0	0.010504	0	0
Unknown	0	broad.mit.edu	37	15	76074470	76074470	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:76074470A>G	uc010umm.1	+	8	649	c.572A>G	c.(571-573)CAG>CGG	p.Q191R	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CGGTTACAGCAGACCATAAAG	0.577													9	77					0	0	0.008871	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651708	84651708	+	Missense_Mutation	SNP	G	A	A	rs146998252	by1000genomes	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:84651708G>A	uc002bjz.3	+	21	3552	c.3328G>A	c.(3328-3330)GGA>AGA	p.G1110R	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.G1110R|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.G1110R	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1110						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			CATGGAAACCGGAGAGGTCAG	0.498													22	67					0	0	0.012319	0	0
ALPK3	57538	broad.mit.edu	37	15	85383474	85383474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:85383474G>A	uc002ble.2	+	5	1737	c.1570G>A	c.(1570-1572)GAA>AAA	p.E524K		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	524					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GAAAGATGAGGAATCCAAGCA	0.552													19	50					0	0	0.007413	0	0
PDE8A	5151	broad.mit.edu	37	15	85669540	85669540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:85669540C>T	uc002blh.2	+	20	2377	c.2188C>T	c.(2188-2190)CCC>TCC	p.P730S	PDE8A_uc002bli.2_Missense_Mutation_p.P684S|PDE8A_uc010bnc.2_Missense_Mutation_p.P483S|PDE8A_uc010bnd.2_Missense_Mutation_p.P483S|PDE8A_uc002blj.2_Missense_Mutation_p.P350S|PDE8A_uc002blk.2_Missense_Mutation_p.P350S|PDE8A_uc002bll.2_Missense_Mutation_p.P82S	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	730	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			TGTGTCCAATCCCTGCCGACC	0.448													51	57					0	0	0.014410	0	0
NTRK3	4916	broad.mit.edu	37	15	88476264	88476264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr15:88476264C>T	uc002bme.1	-	15	2030	c.1868G>A	c.(1867-1869)GGA>GAA	p.G623E	NTRK3_uc002bmh.2_Missense_Mutation_p.G615E|NTRK3_uc002bmf.1_Missense_Mutation_p.G623E|NTRK3_uc010upl.1_Missense_Mutation_p.G525E|NTRK3_uc010bnh.1_Missense_Mutation_p.G615E	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	623	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			ATTCAGGTCTCCATGCTTCAT	0.522			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			30	30					0	0	0.008361	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11859513	11859513	+	Nonsense_Mutation	SNP	A	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:11859513A>C	uc002dbk.2	-	13	1749	c.1551T>G	c.(1549-1551)TAT>TAG	p.Y517*	ZC3H7A_uc002dbj.2_RNA|ZC3H7A_uc002dbl.2_Nonsense_Mutation_p.Y517*|ZC3H7A_uc002dbm.1_Nonsense_Mutation_p.Y427*	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	517						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AGTGGCCTGAATATCTACATT	0.418													30	31					0	0	0.008361	0	0
RRN3P1	730092	broad.mit.edu	37	16	21817457	21817457	+	Silent	SNP	G	A	A	rs150520281	by1000genomes	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:21817457G>A	uc010vbl.1	-	7	603	c.106C>T	c.(106-108)CTG>TTG	p.L36L	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CTTACATCCAGCTTGAGTAGT	0.254													3	11					0	0	0.004672	0	0
CHP2	63928	broad.mit.edu	37	16	23768523	23768523	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:23768523T>C	uc002dmb.1	+	6	839	c.416T>C	c.(415-417)GTT>GCT	p.V139A		NM_022097	NP_071380	O43745	CHP2_HUMAN	hepatocellular carcinoma antigen gene 520	139	EF-hand 3.						calcium ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(48;0.0144)		ATCTCTCAGGTTCTCCGTCTG	0.557													14	44					0	0	0.003163	0	0
RABEP2	79874	broad.mit.edu	37	16	28925708	28925708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:28925708G>A	uc002drq.2	-	5	791	c.743C>T	c.(742-744)TCC>TTC	p.S248F	uc010vct.1_Intron|RABEP2_uc010vdf.1_Missense_Mutation_p.S177F|RABEP2_uc010byn.2_Missense_Mutation_p.S248F|RABEP2_uc002drr.2_Missense_Mutation_p.S248F	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	248					endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			ovary(1)|breast(1)|skin(1)	3						TTGGGGCAGGGAGGAGCTGCT	0.672													10	34					0	0	0.010729	0	0
CD2BP2	10421	broad.mit.edu	37	16	30364908	30364908	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:30364908G>A	uc002dxr.2	-	4	842	c.589C>T	c.(589-591)CAG>TAG	p.Q197*	CD2BP2_uc002dxs.2_Nonsense_Mutation_p.Q197*	NM_006110	NP_006101	O95400	CD2B2_HUMAN	CD2 antigen (cytoplasmic tail) binding protein	197					assembly of spliceosomal tri-snRNP	cytoplasm|nucleoplasm|U5 snRNP	protein binding|ribonucleoprotein binding			ovary(1)	1						TCCAGGCGCTGAGGGGAACTG	0.642													11	13					0	0	0.010729	0	0
SEPHS2	22928	broad.mit.edu	37	16	30456450	30456450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:30456450C>T	uc010ves.1	-	2	775	c.599G>A	c.(598-600)CGG>CAG	p.R200Q	SEPHS2_uc002dyh.1_Missense_Mutation_p.R143Q|SEPHS2_uc010vet.1_Missense_Mutation_p.R82Q	NM_012248	NP_036380	Q99611	SPS2_HUMAN	selenophosphate synthetase 2	200					selenocysteine biosynthetic process		ATP binding|selenide, water dikinase activity			breast(2)	2						AGCCGCATCCCGAAAGCCTTT	0.522													36	76					0	0	0.006999	0	0
PRSS36	146547	broad.mit.edu	37	16	31152904	31152904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:31152904G>A	uc002ebd.2	-	12	1846	c.1787C>T	c.(1786-1788)CCA>CTA	p.P596L	PRSS36_uc010vff.1_Missense_Mutation_p.P371L|PRSS36_uc010vfg.1_Missense_Mutation_p.P591L|PRSS36_uc010vfh.1_Missense_Mutation_p.P596L	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	596	Peptidase S1 3.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						GACCCCCACTGGAGCAGCCTC	0.682													23	34					0	0	0.014323	0	0
Unknown	0	broad.mit.edu	37	16	32077466	32077466	+	RNA	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:32077466C>T	uc010vft.1	+	1		c.81C>T			uc010vfu.1_5'Flank					Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:aims0058h.																		CCTCTGGATTCACCTTCAGTA	0.562													59	164					0	0	0.014410	0	0
VPS35	55737	broad.mit.edu	37	16	46708511	46708511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:46708511C>T	uc002eef.3	-	9	1075	c.976G>A	c.(976-978)GAT>AAT	p.D326N	VPS35_uc002eed.2_Missense_Mutation_p.D147N|VPS35_uc002eee.2_Missense_Mutation_p.D287N	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	326					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				GAAAATATATCAAAAAGTTTA	0.348													4	16					0	0	0.001168	0	0
ABCC11	85320	broad.mit.edu	37	16	48244997	48244997	+	Silent	SNP	G	A	A	rs139456533		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:48244997G>A	uc002eff.1	-	10	1820	c.1470C>T	c.(1468-1470)ATC>ATT	p.I490I	ABCC11_uc002efg.1_Silent_p.I490I|ABCC11_uc002efh.1_Silent_p.I490I|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	490	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CCCCATTGACGATCCCGGGAC	0.577									Cerumen_Type				39	83					0	0	0.007835	0	0
SNX20	124460	broad.mit.edu	37	16	50709816	50709816	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:50709816C>T	uc002egk.2	-	3	320	c.147G>A	c.(145-147)CTG>CTA	p.L49L	SNX20_uc010vgp.1_Silent_p.L49L|SNX20_uc002egi.3_Silent_p.L49L	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	49					cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						AGTTGGAGCTCAGGCCACTGT	0.562													25	64					0	0	0.005443	0	0
SALL1	6299	broad.mit.edu	37	16	51175273	51175273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:51175273G>A	uc010vgs.1	-	2	891	c.860C>T	c.(859-861)TCC>TTC	p.S287F	SALL1_uc010vgr.1_Missense_Mutation_p.S190F|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	287					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AGATAAATGGGAACTTAGCGT	0.507													39	77					0	0	0.006230	0	0
CHD9	80205	broad.mit.edu	37	16	53331032	53331032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:53331032C>T	uc002ehb.2	+	29	5839	c.5675C>T	c.(5674-5676)TCC>TTC	p.S1892F	CHD9_uc002egy.2_Missense_Mutation_p.S1892F|CHD9_uc002ehc.2_Missense_Mutation_p.S1892F|CHD9_uc002ehf.2_Missense_Mutation_p.S1006F|CHD9_uc010cbw.2_Missense_Mutation_p.S260F	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	1892					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				GCATTCATGTCCATGTGTCGG	0.373													34	100					0	0	0.005524	0	0
NLRC5	84166	broad.mit.edu	37	16	57093400	57093400	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:57093400C>T	uc002ekk.1	+	30	4167	c.3942C>T	c.(3940-3942)TTC>TTT	p.F1314F	NLRC5_uc002ekn.2_Silent_p.F975F|NLRC5_uc002ekl.2_Silent_p.F1118F|NLRC5_uc002ekm.2_Silent_p.F1088F|NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekp.1_Silent_p.F229F|NLRC5_uc002ekq.1_5'UTR|NLRC5_uc002ekr.1_Silent_p.F201F	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1314					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				AGCAGAGCTTCCGGATTCACT	0.622													4	19					0	0	0.009096	0	0
NDRG4	65009	broad.mit.edu	37	16	58538174	58538174	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:58538174C>T	uc002eno.2	+	3	350	c.244C>T	c.(244-246)CAG>TAG	p.Q82*	NDRG4_uc002enk.2_Nonsense_Mutation_p.Q114*|NDRG4_uc002enm.2_Nonsense_Mutation_p.Q134*|NDRG4_uc010vif.1_Nonsense_Mutation_p.Q114*|NDRG4_uc010cdk.2_Nonsense_Mutation_p.Q100*|NDRG4_uc010vig.1_Nonsense_Mutation_p.Q112*|NDRG4_uc010vih.1_Nonsense_Mutation_p.Q27*|NDRG4_uc010vii.1_Nonsense_Mutation_p.Q100*|NDRG4_uc002enp.2_Nonsense_Mutation_p.Q82*|NDRG4_uc002enq.1_5'Flank	NM_022910	NP_075061	Q9ULP0	NDRG4_HUMAN	NDRG family member 4 isoform 1	82					cell differentiation|cell growth|multicellular organismal development|response to stress	cytoplasm				skin(1)	1						GCAGTTTCCTCAGGGGTAGGT	0.612													42	88					0	0	0.008740	0	0
CDH8	1006	broad.mit.edu	37	16	61851459	61851459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:61851459G>A	uc002eog.1	-	7	1453	c.1201C>T	c.(1201-1203)CAT>TAT	p.H401Y	CDH8_uc002eoh.2_Missense_Mutation_p.H170Y	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	401	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GCATTTTCATGAACTTCAAGT	0.453													18	42					0	0	0.007413	0	0
RLTPR	146206	broad.mit.edu	37	16	67681857	67681857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:67681857G>A	uc002etn.2	+	13	1187	c.1067G>A	c.(1066-1068)AGT>AAT	p.S356N	RLTPR_uc010cel.1_Missense_Mutation_p.S356N|RLTPR_uc010vjr.1_Missense_Mutation_p.S356N	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	356	LRR 6.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		TCCGAGGACAGTGGGGTGAGT	0.672													14	13					0	0	0.004007	0	0
SLC12A4	6560	broad.mit.edu	37	16	67991822	67991822	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:67991822G>A	uc002euz.2	-	4	609	c.468C>T	c.(466-468)ATC>ATT	p.I156I	SLC12A4_uc010ceu.2_Silent_p.I150I|SLC12A4_uc010vkh.1_Silent_p.I125I|SLC12A4_uc010vki.1_Silent_p.I156I|SLC12A4_uc010vkj.1_Silent_p.I158I|SLC12A4_uc002eva.2_Silent_p.I156I|SLC12A4_uc002evb.2_Intron|SLC12A4_uc010cew.1_Silent_p.I39I	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	156	Helical; (Potential).				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	AGATAAGCACGATGAGGAGGG	0.632													11	38					0	0	0.008291	0	0
HPR	3250	broad.mit.edu	37	16	72107798	72107798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:72107798G>A	uc002fby.2	+	2	43	c.13G>A	c.(13-15)GGA>AGA	p.G5R	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	5					proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				CAGTGACCTGGGAGCTGTCAT	0.443													34	100					0	0	0.007835	0	0
BCAR1	9564	broad.mit.edu	37	16	75268868	75268868	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:75268868G>A	uc002fdv.2	-	5	2052	c.1929C>T	c.(1927-1929)TTC>TTT	p.F643F	BCAR1_uc002fdt.2_Silent_p.F96F|BCAR1_uc002fdu.2_Silent_p.F433F|BCAR1_uc010cgu.2_Silent_p.F632F|BCAR1_uc010vna.1_Silent_p.F641F|BCAR1_uc010vnb.1_Silent_p.F689F|BCAR1_uc002fdw.2_Silent_p.F643F|BCAR1_uc010vnc.1_Silent_p.F495F|BCAR1_uc010vnd.1_Silent_p.F661F|BCAR1_uc002fdx.2_Silent_p.F661F	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	643	SH3-binding (Potential).				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		CCTGGGAGGTGAACTTAGGGG	0.662													26	51					0	0	0.007291	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77398197	77398197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:77398197C>T	uc002ffc.3	-	5	1279	c.860G>A	c.(859-861)GGA>GAA	p.G287E	ADAMTS18_uc010chc.1_5'Flank|ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	287					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TTGTGATTTTCCAGCTGATCT	0.488													28	55					0	0	0.008361	0	0
SLC38A8	146167	broad.mit.edu	37	16	84050753	84050753	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:84050753G>A	uc002fhg.1	-	7	945	c.945C>T	c.(943-945)TTC>TTT	p.F315F		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	315	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0						ACCTCCCCAGGAAGAGCACGA	0.507													16	22					0	0	0.007413	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84872130	84872130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:84872130C>T	uc010voh.1	+	2	256	c.29C>T	c.(28-30)CCC>CTC	p.P10L	CRISPLD2_uc010vog.1_Missense_Mutation_p.P10L|CRISPLD2_uc002fio.2_Missense_Mutation_p.P10L|CRISPLD2_uc002fik.3_Missense_Mutation_p.P10L|CRISPLD2_uc002fil.2_Missense_Mutation_p.P10L|CRISPLD2_uc002fim.2_Missense_Mutation_p.P10L|CRISPLD2_uc002fin.3_Missense_Mutation_p.P10L	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	10						extracellular region|transport vesicle					0						GGTGTCATCCCCTTGGGGCTG	0.617													54	88					0	0	0.014410	0	0
CYBA	1535	broad.mit.edu	37	16	88713214	88713214	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:88713214A>T	uc002flb.2	-	4	272	c.236T>A	c.(235-237)CTG>CAG	p.L79Q	CYBA_uc002flc.1_5'Flank|CYBA_uc002fld.1_Missense_Mutation_p.L79Q|CYBA_uc010chx.1_Missense_Mutation_p.L79Q	NM_000101	NP_000092	P13498	CY24A_HUMAN	cytochrome b, alpha polypeptide	79					cytochrome complex assembly|electron transport chain|hydrogen peroxide biosynthetic process|inflammatory response|innate immune response|respiratory burst|smooth muscle hypertrophy|superoxide anion generation|transport	NADPH oxidase complex|stored secretory granule	electron carrier activity|heme binding|protein heterodimerization activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0478)		GGGCCCGAACAGCTTCACCAC	0.652													22	49					0	0	0.021523	0	0
CTU2	348180	broad.mit.edu	37	16	88780099	88780099	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr16:88780099C>T	uc002flm.2	+	9	966	c.918C>T	c.(916-918)CCC>CCT	p.P306P	CTU2_uc002fln.2_Silent_p.P306P|CTU2_uc010chz.2_Silent_p.P377P|CTU2_uc010cia.2_Silent_p.P219P	NM_001012759	NP_001012777	Q2VPK5	CTU2_HUMAN	cytoplasmic tRNA 2-thiolation protein 2 isoform	306					tRNA thio-modification|tRNA wobble uridine modification	cytoplasm|protein complex|soluble fraction	protein binding			skin(1)	1						TGGTGCGGCCCATGCGGGACC	0.647													27	70					0	0	0.004656	0	0
PRPF8	10594	broad.mit.edu	37	17	1558786	1558786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:1558786G>A	uc002fte.2	-	37	5959	c.5845C>T	c.(5845-5847)CGG>TGG	p.R1949W		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1949	Involved in interaction with pre-mRNA 5' splice site.					catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		ACTTTTGCCCGATCGTTGTTC	0.517													70	46					0	0	0.014410	0	0
SERPINF2	5345	broad.mit.edu	37	17	1657585	1657585	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:1657585G>A	uc002ftk.1	+	10	1310	c.1233G>A	c.(1231-1233)GTG>GTA	p.V411V	SERPINF2_uc010vqr.1_Silent_p.V347V	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor	411			V -> M (in APLID).		acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	CCTTCAGCGTGAACCGCCCCT	0.652													108	50					0	0	0.014410	0	0
ZNF594	84622	broad.mit.edu	37	17	5085600	5085600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:5085600G>A	uc010cla.1	-	2	2108	c.1952C>T	c.(1951-1953)CCC>CTC	p.P651L		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	651					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						ACATTCATAGGGTTTCTCTCC	0.423													45	37					0	0	0.013114	0	0
PIK3R5	23533	broad.mit.edu	37	17	8784275	8784275	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:8784275G>A	uc002glt.2	-	18	2509	c.2442C>T	c.(2440-2442)CCC>CCT	p.P814P	PIK3R5_uc010vuz.1_Silent_p.P814P|PIK3R5_uc002glu.3_Silent_p.P428P	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	814					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						ACACAGCAAAGGGGCAGCTGT	0.567													64	38					0	0	0.014410	0	0
MYH4	4622	broad.mit.edu	37	17	10351428	10351428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:10351428C>T	uc002gmn.2	-	34	4783	c.4672G>A	c.(4672-4674)GAA>AAA	p.E1558K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1558	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGCCTTCTTCATGCTCAAGA	0.333													40	29					0	0	0.006230	0	0
MYH2	4620	broad.mit.edu	37	17	10433037	10433037	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:10433037C>T	uc010coi.2	-	24	3089	c.2961G>A	c.(2959-2961)GAG>GAA	p.E987E	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.E987E|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	987	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GACCTGCCATCTCTTCTGTGA	0.493													108	87					0	0	0.014410	0	0
ZNF18	7566	broad.mit.edu	37	17	11894356	11894356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:11894356G>A	uc002gng.1	-	5	1117	c.512C>T	c.(511-513)TCC>TTC	p.S171F	ZNF18_uc002gnh.1_Missense_Mutation_p.S171F|ZNF18_uc002gni.1_Missense_Mutation_p.S171F	NM_144680	NP_653281	P17022	ZNF18_HUMAN	zinc finger protein 18	171					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1				Colorectal(4;3.33e-05)|COAD - Colon adenocarcinoma(4;0.000494)|READ - Rectum adenocarcinoma(10;0.233)		AGGCCCTGAGGATGAATTCTC	0.522													153	84					0	0	0.014410	0	0
TNFRSF13B	23495	broad.mit.edu	37	17	16855861	16855861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:16855861G>A	uc002gqs.1	-	2	111	c.98C>T	c.(97-99)TCC>TTC	p.S33F	TNFRSF13B_uc010vwt.1_Intron|TNFRSF13B_uc002gqt.1_Intron|TNFRSF13B_uc010vwu.1_Missense_Mutation_p.S33F	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	33	TNFR-Cys 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						TTCGGGGCAGGATCTCATAGC	0.617									IgA_Deficiency_Selective				11	28					0	0	0.010729	0	0
SLC47A1	55244	broad.mit.edu	37	17	19480675	19480675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:19480675G>A	uc002gvy.1	+	17	1608	c.1522G>A	c.(1522-1524)GAT>AAT	p.D508N	SLC47A1_uc002gvx.2_Missense_Mutation_p.D508N|SLC47A1_uc010vyz.1_3'UTR|SLC47A1_uc010cqp.1_Missense_Mutation_p.D206N|SLC47A1_uc010cqq.1_Missense_Mutation_p.D254N|SLC47A1_uc010vza.1_Missense_Mutation_p.D220N|SLC47A1_uc010vzb.1_Missense_Mutation_p.D183N|SLC47A1_uc010vzc.1_Missense_Mutation_p.D180N	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	508	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					TTTAACGAACGATGTTGGAAA	0.443													31	88					0	0	0.009535	0	0
ALDH3A1	218	broad.mit.edu	37	17	19645922	19645922	+	Missense_Mutation	SNP	G	A	A	rs146746671		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:19645922G>A	uc010cqu.2	-	3	746	c.416C>T	c.(415-417)CCC>CTC	p.P139L	ALDH3A1_uc010vzd.1_Missense_Mutation_p.P139L|ALDH3A1_uc002gwj.2_Missense_Mutation_p.P139L|ALDH3A1_uc010cqv.2_Missense_Mutation_p.P139L|ALDH3A1_uc002gwk.2_Missense_Mutation_p.P256L|ALDH3A1_uc002gwl.1_Missense_Mutation_p.P66L	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	139					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	CAGCTCCGAGGGCTTGAGGAC	0.617													25	38					0	0	0.018920	0	0
SLFN11	91607	broad.mit.edu	37	17	33687322	33687322	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:33687322G>C	uc010ctp.2	-	5	1580	c.1138C>G	c.(1138-1140)CCA>GCA	p.P380A	SLFN11_uc010ctq.2_Missense_Mutation_p.P380A|SLFN11_uc002hjh.3_Missense_Mutation_p.P380A|SLFN11_uc002hjg.3_Missense_Mutation_p.P380A|SLFN11_uc010ctr.2_Missense_Mutation_p.P380A	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	380						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GAGTACACTGGTCTGCTAAGG	0.393													4	79					0	0	0.014758	0	0
SLFN13	146857	broad.mit.edu	37	17	33770934	33770934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:33770934G>A	uc002hjk.1	-	2	1402	c.1072C>T	c.(1072-1074)CCT>TCT	p.P358S	SLFN13_uc010wch.1_Missense_Mutation_p.P358S|SLFN13_uc002hjl.2_Missense_Mutation_p.P358S|SLFN13_uc010ctt.2_Missense_Mutation_p.P40S|SLFN13_uc002hjm.2_Missense_Mutation_p.P27S	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	358						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		AAGTCTGGAGGAAACTCTGAA	0.393													17	22					0	0	0.004990	0	0
SLFN13	146857	broad.mit.edu	37	17	33771717	33771717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:33771717G>A	uc002hjk.1	-	1	1313	c.983C>T	c.(982-984)CCC>CTC	p.P328L	SLFN13_uc010wch.1_Missense_Mutation_p.P328L|SLFN13_uc002hjl.2_Missense_Mutation_p.P328L|SLFN13_uc010ctt.2_Missense_Mutation_p.P10L|SLFN13_uc002hjm.2_5'UTR	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	328						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CCATGACTTGGGAGCTTCCGA	0.468													28	64					0	0	0.007291	0	0
GPR179	440435	broad.mit.edu	37	17	36483885	36483885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:36483885C>T	uc002hpz.2	-	11	5588	c.5567G>A	c.(5566-5568)GGA>GAA	p.G1856E		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1856	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TACGTCTTCTCCCAGGGAAGT	0.498													45	102					0	0	0.014410	0	0
KRT12	3859	broad.mit.edu	37	17	39019761	39019761	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:39019761G>A	uc002hvk.2	-	5	1095	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	357	Rod.|Coil 2.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				ACTGTAGCTCGATCTCCAGGT	0.552													13	36					0	0	0.020292	0	0
KRT9	3857	broad.mit.edu	37	17	39726149	39726149	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:39726149G>A	uc002hxe.3	-	3	910	c.844C>T	c.(844-846)CAG>TAG	p.Q282*	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	282	Rod.|Coil 1B.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				AGCTCCTCCTGCAGAGTCTCA	0.552													58	158					0	0	0.014410	0	0
KRT16	3868	broad.mit.edu	37	17	39767645	39767645	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:39767645G>A	uc002hxg.3	-	3	862	c.723C>T	c.(721-723)ATC>ATT	p.I241I	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	241	Coil 1B.|Rod.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				TCAGGCCTTCGATCTGCATCT	0.637													51	77					0	0	0.014410	0	0
KAT2A	2648	broad.mit.edu	37	17	40271325	40271325	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:40271325G>A	uc002hyx.2	-	6	1071	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F		NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	337					chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						TCTCCACTCGGAACTTTTCCA	0.567													46	87					0	0	0.014410	0	0
MEOX1	4222	broad.mit.edu	37	17	41738450	41738450	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:41738450C>T	uc002idz.2	-	1	482	c.453G>A	c.(451-453)CGG>CGA	p.R151R	MEOX1_uc002iea.2_Silent_p.R151R|MEOX1_uc002ieb.2_Silent_p.R36R	NM_004527	NP_004518	P50221	MEOX1_HUMAN	mesenchyme homeobox 1 isoform 1	151						nucleus	sequence-specific DNA binding				0		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0753)		TCTCCTTTCTCCGCCTGGATG	0.418													72	190					0	0	0.014410	0	0
SLC4A1	6521	broad.mit.edu	37	17	42336638	42336638	+	Missense_Mutation	SNP	C	T	T	rs142195740		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:42336638C>T	uc002igf.3	-	9	918	c.769G>A	c.(769-771)GAG>AAG	p.E257K	SLC4A1_uc002igg.3_Missense_Mutation_p.E257K	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	257	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		ACCGGCAGCTCCACCGCCTCC	0.652													15	31					0	0	0.003163	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47230265	47230265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:47230265C>T	uc002ion.2	+	4	696	c.637C>T	c.(637-639)CCA>TCA	p.P213S	B4GALNT2_uc010wlt.1_Missense_Mutation_p.P127S|B4GALNT2_uc010wlu.1_Missense_Mutation_p.P153S	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	213	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			GGTTCCCATCCCAGGTAAGTA	0.512													3	16					0	0	0.009096	0	0
CHAD	1101	broad.mit.edu	37	17	48546022	48546023	+	Missense_Mutation	DNP	CT	TA	TA	rs138853066		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:48546022_48546023CT>TA	uc010dbr.2	-	1	205_206	c.152_153AG>TA	c.(151-153)GAG>GTA	p.E51V	ACSF2_uc002iqu.2_Intron|ACSF2_uc010wml.1_Intron|ACSF2_uc010wmm.1_Intron|ACSF2_uc010wmn.1_Intron|ACSF2_uc010wmo.1_Intron|CHAD_uc010dbs.2_Missense_Mutation_p.E51V|ACSF2_uc010dbt.1_Intron	NM_001267	NP_001258	O15335	CHAD_HUMAN	chondroadherin precursor	51	LRRNT.				regulation of cell growth	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(2)|central_nervous_system(1)	3	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			GCTTGGTCTTCTCTGACACCTT	0.624													9	28					0	0	0.004672	0	0
ANKFN1	162282	broad.mit.edu	37	17	54428271	54428271	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:54428271C>T	uc002iun.1	+	4	377	c.342C>T	c.(340-342)TTC>TTT	p.F114F		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	114										large_intestine(1)|ovary(1)	2						ACTCTTCCTTCGATGAGGCCT	0.448													24	33					0	0	0.005443	0	0
GH2	2689	broad.mit.edu	37	17	61949558	61949558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:61949558C>T	uc002jcj.2	-	5	640	c.578G>A	c.(577-579)AGG>AAG	p.R193K	CSH2_uc002jcg.2_Silent_p.K99K|CSH2_uc002jch.2_Silent_p.K194K|CSH2_uc002jci.2_3'UTR|CSH2_uc002jck.2_Silent_p.K194K	NM_022557	NP_072051	P01242	SOM2_HUMAN	growth hormone 2 isoform 2	Error:Variant_position_missing_in_P01242_after_alignment						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						TGTCCATGTCCTTCCTGAAGC	0.562													45	106					0	0	0.014410	0	0
GH1	2688	broad.mit.edu	37	17	61995482	61995482	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:61995482G>A	uc002jdj.2	-	3	248	c.186C>T	c.(184-186)ATC>ATT	p.I62I	GH1_uc002jdi.2_Intron|GH1_uc002jdk.2_Intron|GH1_uc002jdl.2_Intron|GH1_uc002jdm.2_Intron|GH1_uc002jdn.2_Silent_p.I62I	NM_000515	NP_000506	P01241	SOMA_HUMAN	growth hormone 1 isoform 1	62					glucose transport|growth hormone receptor signaling pathway|JAK-STAT cascade|positive regulation of activation of JAK2 kinase activity|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of MAP kinase activity|positive regulation of multicellular organism growth|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|response to estradiol stimulus	extracellular space	growth factor activity|growth hormone receptor binding|hormone activity|metal ion binding|prolactin receptor binding				0						GTTCCTTTGGGATATAGGCTT	0.517													63	167					0	0	0.014410	0	0
SCN4A	6329	broad.mit.edu	37	17	62018401	62018401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:62018401C>T	uc002jds.1	-	24	5318	c.5241G>A	c.(5239-5241)ATG>ATA	p.M1747I		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1747	IQ.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	ATGCCTGCTTCATGGAGCGCT	0.617													34	72					0	0	0.021022	0	0
ERN1	2081	broad.mit.edu	37	17	62132152	62132152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:62132152G>A	uc002jdz.2	-	14	1822	c.1709C>T	c.(1708-1710)TCC>TTC	p.S570F		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	570	Cytoplasmic (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						GGGACAGAAGGAAATTTTCCC	0.488													7	6					0	0	0.001984	0	0
SMURF2	64750	broad.mit.edu	37	17	62553739	62553739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:62553739G>A	uc002jep.1	-	13	1806	c.1418C>T	c.(1417-1419)TCT>TTT	p.S473F	SMURF2_uc002jeq.1_Missense_Mutation_p.S232F|SMURF2_uc002jer.1_Missense_Mutation_p.S232F	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	473	HECT.				BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			ATTAACTGCAGAATCAGGATT	0.308													30	60					0	0	0.009535	0	0
SDK2	54549	broad.mit.edu	37	17	71433893	71433893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:71433893G>A	uc010dfm.2	-	8	985	c.985C>T	c.(985-987)CCC>TCC	p.P329S	SDK2_uc010dfn.2_Missense_Mutation_p.P8S	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	329	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion	integral to membrane				ovary(2)	2						GCCTGACAGGGGATGTCCACC	0.557													20	89					0	0	0.014323	0	0
GPR142	350383	broad.mit.edu	37	17	72368061	72368061	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:72368061G>A	uc010wqy.1	+	4	711	c.711G>A	c.(709-711)CTG>CTA	p.L237L	GPR142_uc010wqx.1_Silent_p.L149L	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	237	Helical; Name=3; (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CCAACATCCTGGAGTTTGCTG	0.657													9	26					0	0	0.006214	0	0
GPRC5C	55890	broad.mit.edu	37	17	72436926	72436926	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:72436926C>T	uc002jks.2	+	1	1050	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	GPRC5C_uc002jkp.2_Silent_p.F382F|GPRC5C_uc002jkq.2_Intron|GPRC5C_uc002jkr.2_Silent_p.F349F|GPRC5C_uc002jkt.2_Silent_p.F337F|GPRC5C_uc002jku.2_5'Flank	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	337	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						AGAGCATGTTCGTGGAGAACA	0.582													24	42					0	0	0.004656	0	0
CD300LD	100131439	broad.mit.edu	37	17	72584677	72584677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:72584677C>T	uc002jkz.2	-	2	381	c.352G>A	c.(352-354)GTC>ATC	p.V118I	C17orf77_uc002jla.1_Intron	NM_001115152	NP_001108624	Q6UXZ3	CLM4_HUMAN	CD300 molecule-like family member d precursor	118	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane	receptor activity				0						TGAACTTTGACCCCAAGATCA	0.483													25	73					0	0	0.021523	0	0
TMEM104	54868	broad.mit.edu	37	17	72832478	72832478	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:72832478G>A	uc002jls.3	+	10	1305	c.1143G>A	c.(1141-1143)AAG>AAA	p.K381K	TMEM104_uc010wrf.1_Intron|TMEM104_uc010wrg.1_Intron|TMEM104_uc010dfx.2_Silent_p.K381K	NM_017728	NP_060198	Q8NE00	TM104_HUMAN	transmembrane protein 104	381	Cytoplasmic (Potential).					integral to membrane					0	all_lung(278;0.23)					ACAACTGGAAGACACTCTTCC	0.637													54	85					0	0	0.014410	0	0
FADS6	283985	broad.mit.edu	37	17	72877225	72877225	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:72877225G>A	uc002jmd.1	-	4	711	c.699C>T	c.(697-699)CAC>CAT	p.H233H	FADS6_uc010wrn.1_Intron	NM_178128	NP_835229	Q8N9I5	FADS6_HUMAN	fatty acid desaturase domain family, member 6	239					fatty acid biosynthetic process	integral to membrane	oxidoreductase activity				0	all_lung(278;0.172)|Lung NSC(278;0.207)					GGAGGTAGGGGTGGGCCAACA	0.607													18	17					0	0	0.008871	0	0
EVPL	2125	broad.mit.edu	37	17	74005265	74005265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:74005265C>T	uc002jqi.2	-	22	4249	c.4021G>A	c.(4021-4023)GCC>ACC	p.A1341T	EVPL_uc010wss.1_Missense_Mutation_p.A1363T|EVPL_uc010wst.1_Missense_Mutation_p.A811T	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1341	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CTCTTCTGGGCCGCCTCCCGC	0.677													33	106					0	0	0.017118	0	0
DNAH17	8632	broad.mit.edu	37	17	76423064	76423064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:76423064C>T	uc010dhp.1	-	23	3936	c.3714G>A	c.(3712-3714)ATG>ATA	p.M1238I	DNAH17_uc002jvq.2_Missense_Mutation_p.M523I|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCAGGATGTTCATTCTTTCAC	0.542													6	20					0	0	0.003080	0	0
ENPP7	339221	broad.mit.edu	37	17	77709387	77709387	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:77709387C>T	uc002jxa.2	+	3	965	c.945C>T	c.(943-945)TTC>TTT	p.F315F		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	315					negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			AGGAGGCGTTCCCCGAGGCCT	0.607													29	45					0	0	0.006320	0	0
BAIAP2	10458	broad.mit.edu	37	17	79077448	79077448	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:79077448C>T	uc002jzg.2	+	8	897	c.789C>T	c.(787-789)TCC>TCT	p.S263S	BAIAP2_uc002jyz.3_Silent_p.S263S|BAIAP2_uc002jza.2_Silent_p.S263S|BAIAP2_uc002jzc.2_Silent_p.S263S|BAIAP2_uc002jzb.2_Silent_p.S20S|BAIAP2_uc002jzd.2_Silent_p.S263S|BAIAP2_uc002jzf.2_Silent_p.S263S|BAIAP2_uc002jze.2_Silent_p.S296S|BAIAP2_uc010wuh.1_Silent_p.S185S|BAIAP2_uc002jzh.2_Silent_p.S264S|BAIAP2_uc010wui.1_Silent_p.S126S	NM_017451	NP_059345	Q9UQB8	BAIP2_HUMAN	BAI1-associated protein 2 isoform 2	263					axonogenesis|filopodium assembly|insulin receptor signaling pathway|regulation of actin cytoskeleton organization|response to bacterium	cell junction|cytoskeleton|cytosol|filopodium|nucleus|ruffle	cytoskeletal adaptor activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding				0	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			CCTCCAAGTCCAACCTGGTCA	0.697													11	37					0	0	0.013537	0	0
ARL16	339231	broad.mit.edu	37	17	79650840	79650840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr17:79650840C>T	uc002kbf.2	-	1	115	c.16G>A	c.(16-18)GGG>AGG	p.G6R	ARL16_uc002kbe.2_5'Flank|HGS_uc010wus.1_5'Flank|HGS_uc002kbg.2_5'Flank	NM_001040025	NP_001035114	Q0P5N6	ARL16_HUMAN	ADP-ribosylation factor-like 16	6							GTP binding				0	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			AAGGCCCGCCCACCGGCCACT	0.637													11	24					0	0	0.013537	0	0
CETN1	1068	broad.mit.edu	37	18	580850	580850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:580850G>A	uc002kko.1	+	1	484	c.442G>A	c.(442-444)GAA>AAA	p.E148K		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	148	EF-hand 4.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						GATGATCGACGAAGCTGATCG	0.537													20	35					0	0	0.010504	0	0
MC2R	4158	broad.mit.edu	37	18	13884968	13884968	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:13884968G>A	uc002ksp.1	-	2	727	c.550C>T	c.(550-552)CTG>TTG	p.L184L		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	184	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	ACCAGCATCAGCGGGAACAGC	0.562													16	58					0	0	0.003163	0	0
POTEC	388468	broad.mit.edu	37	18	14542924	14542924	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:14542924C>T	uc010dln.2	-	1	676	c.222G>A	c.(220-222)GGG>GGA	p.G74G	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	74										skin(3)	3						TCGTGCCGCTCCCCCTGCAGC	0.567													27	237					0	0	0.005443	0	0
LOC644669	644669	broad.mit.edu	37	18	15323276	15323276	+	RNA	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:15323276A>T	uc002ktd.1	-	3		c.183T>A				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						ATCAACTGCAATTGCATTTGC	0.308													3	10					0	0	0.003080	0	0
LOC644669	644669	broad.mit.edu	37	18	15323336	15323336	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:15323336G>A	uc002ktd.1	-	3		c.123C>T				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						TTTCCTTATGGCCAATAAAAG	0.289													3	10					0	0	0.014758	0	0
LOC644669	644669	broad.mit.edu	37	18	15323340	15323340	+	RNA	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:15323340A>G	uc002ktd.1	-	3		c.119T>C				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						CTTATGGCCAATAAAAGTGGT	0.299													3	10					0	0	0.009096	0	0
LOC644669	644669	broad.mit.edu	37	18	15323347	15323347	+	RNA	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:15323347T>C	uc002ktd.1	-	3		c.112A>G				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						CCAATAAAAGTGGTGTGTGGC	0.303													3	9					0	0	0.009096	0	0
LAMA3	3909	broad.mit.edu	37	18	21526119	21526119	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:21526119C>T	uc002kuq.2	+	70	9308	c.9222C>T	c.(9220-9222)GGC>GGT	p.G3074G	LAMA3_uc002kur.2_Silent_p.G3018G|LAMA3_uc002kus.3_Silent_p.G1465G|LAMA3_uc002kut.3_Silent_p.G1409G	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3074	Laminin G-like 4.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGGTGTTTGGCCATGATGGGG	0.443													16	87					0	0	0.006122	0	0
CABYR	26256	broad.mit.edu	37	18	21735932	21735932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:21735932C>T	uc002kux.2	+	4	619	c.467C>T	c.(466-468)CCA>CTA	p.P156L	CABYR_uc010xbb.1_Missense_Mutation_p.P58L|CABYR_uc002kuy.2_Missense_Mutation_p.P156L|CABYR_uc002kuz.2_Missense_Mutation_p.P156L|CABYR_uc002kva.2_Missense_Mutation_p.P138L|CABYR_uc002kvb.2_Missense_Mutation_p.P58L|CABYR_uc002kvc.2_Missense_Mutation_p.P156L|CABYR_uc010dlw.2_RNA	NM_012189	NP_036321	O75952	CABYR_HUMAN	calcium-binding tyrosine	156					ciliary or flagellar motility|signal transduction|sperm capacitation	cytoplasm|cytoskeleton|flagellum|motile cilium|nucleus	calcium ion binding|cAMP-dependent protein kinase regulator activity|enzyme binding|protein heterodimerization activity|SH3 domain binding				0	all_cancers(21;9.13e-05)|all_epithelial(16;5.49e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0305)|Ovarian(20;0.17)					CCCTCATCACCACCTCCAACA	0.507													26	72					0	0	0.005443	0	0
DSC3	1825	broad.mit.edu	37	18	28605749	28605749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:28605749G>A	uc002kwj.3	-	5	762	c.607C>T	c.(607-609)CGT>TGT	p.R203C	DSC3_uc002kwi.3_Missense_Mutation_p.R203C	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	203	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			TATTCTTCACGATCCACAGGC	0.338													13	34					0	0	0.020292	0	0
DSC1	1823	broad.mit.edu	37	18	28712551	28712551	+	Missense_Mutation	SNP	C	T	T	rs147041330	byFrequency	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:28712551C>T	uc002kwn.2	-	14	2480	c.2218G>A	c.(2218-2220)GGA>AGA	p.G740R	DSC1_uc002kwm.2_Missense_Mutation_p.G740R	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	740	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TCTCCAGGTCCTTCAGTATTT	0.343													18	76					0	0	0.008871	0	0
DSG4	147409	broad.mit.edu	37	18	28970705	28970705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:28970705G>A	uc002kwq.2	+	6	739	c.604G>A	c.(604-606)GAG>AAG	p.E202K	DSG4_uc002kwr.2_Missense_Mutation_p.E202K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	202	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CGTCTCTCAGGAGCCATCAGG	0.408													9	27					0	0	0.010729	0	0
C18orf34	374864	broad.mit.edu	37	18	30804860	30804860	+	Missense_Mutation	SNP	C	T	T	rs112779048	byFrequency	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:30804860C>T	uc002kxn.2	-	16	1839	c.1697G>A	c.(1696-1698)CGG>CAG	p.R566Q	C18orf34_uc010dme.1_Missense_Mutation_p.R80Q|C18orf34_uc010xbr.1_Missense_Mutation_p.R566Q|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.R566Q|C18orf34_uc002kxp.2_Missense_Mutation_p.R566Q	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	566										ovary(1)	1						AAGCTCTTTCCGCTCAAGTGC	0.358													20	44					0	0	0.016522	0	0
MAPRE2	10982	broad.mit.edu	37	18	32677441	32677441	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:32677441C>T	uc002kyg.2	+	3	462	c.282C>T	c.(280-282)CTC>CTT	p.L94L	MAPRE2_uc010xcb.1_Silent_p.L51L|MAPRE2_uc010xcc.1_Silent_p.L82L|MAPRE2_uc002kyf.2_Silent_p.L94L|MAPRE2_uc002kyh.2_Silent_p.L41L|MAPRE2_uc010xcd.1_Silent_p.L51L	NM_014268	NP_055083	Q15555	MARE2_HUMAN	microtubule-associated protein, RP/EB family,	94	CH.				cell division|cell proliferation|mitosis|signal transduction	cytoplasm|microtubule	microtubule binding			ovary(1)	1						TGGACATGCTCTTCCCTGGCT	0.418													30	65					0	0	0.010818	0	0
DYM	54808	broad.mit.edu	37	18	46645158	46645158	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:46645158G>A	uc002ldi.1	-	15	2067	c.1702C>T	c.(1702-1704)CGA>TGA	p.R568*	DYM_uc010xdf.1_Nonsense_Mutation_p.R378*|DYM_uc002ldj.3_Nonsense_Mutation_p.R390*	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	568						Golgi apparatus					0						GGATGAGTTCGAAATTGTTCA	0.358													10	17					0	0	0.010729	0	0
CCBE1	147372	broad.mit.edu	37	18	57103301	57103301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:57103301C>T	uc002lib.2	-	11	1130	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	CCBE1_uc010dpq.2_Missense_Mutation_p.E83K|CCBE1_uc002lia.2_Missense_Mutation_p.E207K	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	354					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				AACACCTTTTCCTGCAGCTCA	0.537													32	104					0	0	0.019004	0	0
ZNF516	9658	broad.mit.edu	37	18	74154876	74154876	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr18:74154876G>A	uc010dqx.1	-	2	370	c.135C>T	c.(133-135)TTC>TTT	p.F45F	ZNF516_uc002lme.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	45	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		GCGAGCTCTGGAAGGGGAAGC	0.662													15	17					0	0	0.004990	0	0
FEM1A	55527	broad.mit.edu	37	19	4793311	4793311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:4793311C>T	uc002mbf.2	+	1	1584	c.1445C>T	c.(1444-1446)CCC>CTC	p.P482L	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	482					regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		CTGCAGCTGCCCAGGGAGCCC	0.657													29	49					0	0	0.008361	0	0
VAV1	7409	broad.mit.edu	37	19	6854012	6854012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:6854012G>A	uc002mfu.1	+	26	2484	c.2387G>A	c.(2386-2388)CGA>CAA	p.R796Q	VAV1_uc010xjh.1_Missense_Mutation_p.R764Q|VAV1_uc010dva.1_Missense_Mutation_p.R774Q|VAV1_uc002mfv.1_Missense_Mutation_p.R741Q	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	796	SH3 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						TTCTGCGCCCGAGACCGATCA	0.547													30	102					0	0	0.010818	0	0
EMR1	2015	broad.mit.edu	37	19	6901952	6901952	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:6901952A>G	uc002mfw.2	+	6	619	c.581A>G	c.(580-582)AAC>AGC	p.N194S	EMR1_uc010dvc.2_Missense_Mutation_p.N194S|EMR1_uc010dvb.2_Missense_Mutation_p.N142S|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Intron	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	194	Extracellular (Potential).|EGF-like 4; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					ACTGTTGGAAACTACTCTTGT	0.483													70	201					0	0	0.014410	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7518408	7518408	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:7518408C>T	uc002mgi.2	+	7	1600	c.1347C>T	c.(1345-1347)ATC>ATT	p.I449I	ARHGEF18_uc010xjm.1_Silent_p.I291I|ARHGEF18_uc002mgh.2_Silent_p.I291I|ARHGEF18_uc002mgj.1_Silent_p.I92I	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	449	DH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				TCAAAGATATCATCTCACAAG	0.507													29	49					0	0	0.009535	0	0
CLEC4M	10332	broad.mit.edu	37	19	7830144	7830144	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:7830144C>T	uc002mih.2	+	3	322	c.204C>T	c.(202-204)ATC>ATT	p.I68I	CLEC4M_uc010xjv.1_Intron|CLEC4M_uc002mhy.2_Intron|CLEC4M_uc010xjw.1_Intron|CLEC4M_uc010dvt.2_Silent_p.I68I|CLEC4M_uc010dvs.2_Silent_p.I67I|CLEC4M_uc010xjx.1_Silent_p.I40I|CLEC4M_uc002mhz.2_Silent_p.I68I|CLEC4M_uc002mic.2_Silent_p.I40I|CLEC4M_uc002mia.2_Intron	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	68	Helical; Signal-anchor for type II membrane protein; (Probable).				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						TGGTGGCCATCCTTGTCCAAG	0.622													35	71					0	0	0.017118	0	0
FBN3	84467	broad.mit.edu	37	19	8206852	8206852	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:8206852G>A	uc002mjf.2	-	6	732	c.711C>T	c.(709-711)ATC>ATT	p.I237I		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	237	TB 1.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GGATATTGGGGATGAAGCCGC	0.627													20	36					0	0	0.014323	0	0
MUC16	94025	broad.mit.edu	37	19	8976783	8976783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:8976783C>T	uc002mkp.2	-	73	42487	c.42283G>A	c.(42283-42285)GGC>AGC	p.G14095S	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.G895S|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	14126	SEA 14.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAGCTGAGCCCTTGCCCATA	0.567													11	28					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	8993392	8993392	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:8993392C>T	uc002mkp.2	-	66	41901	c.41697G>A	c.(41695-41697)AGG>AGA	p.R13899R	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.R716R|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13902	Extracellular (Potential).|SEA 12.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAGACTGTCCCTGTCCAGTG	0.562													50	132					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	8999468	8999468	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:8999468C>T	uc002mkp.2	-	56	40911	c.40707G>A	c.(40705-40707)TGG>TGA	p.W13569*	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Nonsense_Mutation_p.W386*|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13571	SEA 10.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCTCAGCTCCCAGTATAGCT	0.577													62	168					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9005651	9005651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:9005651C>T	uc002mkp.2	-	46	39959	c.39755G>A	c.(39754-39756)AGA>AAA	p.R13252K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.R69K|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13254	SEA 8.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGCTGCTGTCTGTCTAGCCC	0.592													27	92					0	0	0.007291	0	0
MUC16	94025	broad.mit.edu	37	19	9059777	9059777	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:9059777C>T	uc002mkp.2	-	3	27873	c.27669G>A	c.(27667-27669)CTG>CTA	p.L9223L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9225	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTCATCTCCAGTTTCTCTG	0.463													28	68					0	0	0.006320	0	0
MUC16	94025	broad.mit.edu	37	19	9064452	9064452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:9064452G>A	uc002mkp.2	-	3	23198	c.22994C>T	c.(22993-22995)TCC>TTC	p.S7665F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7667	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGCCCATGGAAGTGGTCAT	0.522													13	30					0	0	0.013537	0	0
MUC16	94025	broad.mit.edu	37	19	9070263	9070263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:9070263G>A	uc002mkp.2	-	3	17387	c.17183C>T	c.(17182-17184)TCT>TTT	p.S5728F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5730	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCATGTCCAGAAATGGAGGT	0.498													27	59					0	0	0.007291	0	0
MUC16	94025	broad.mit.edu	37	19	9083416	9083416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:9083416C>T	uc002mkp.2	-	1	8603	c.8399G>A	c.(8398-8400)GGA>GAA	p.G2800E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2800	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTTCTGATTCCTCCAGAGCT	0.507													10	15					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9083906	9083906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:9083906C>T	uc002mkp.2	-	1	8113	c.7909G>A	c.(7909-7911)GGA>AGA	p.G2637R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2637	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGGAAGCTCCAGACAGAGTC	0.478													8	26					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9084779	9084779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:9084779C>T	uc002mkp.2	-	1	7240	c.7036G>A	c.(7036-7038)GAA>AAA	p.E2346K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2346	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTGTAGTTTCATTATCCAGT	0.463													12	23					0	0	0.016723	0	0
COL5A3	50509	broad.mit.edu	37	19	10092784	10092784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:10092784C>T	uc002mmq.1	-	32	2503	c.2417G>A	c.(2416-2418)GGA>GAA	p.G806E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	806	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			ACCGGGAAATCCAATAGATCC	0.537													9	26					0	0	0.006214	0	0
ILF3	3609	broad.mit.edu	37	19	10790583	10790583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:10790583C>T	uc002mpn.2	+	8	1156	c.839C>T	c.(838-840)GCG>GTG	p.A280V	ILF3_uc002mpm.2_Missense_Mutation_p.A280V|ILF3_uc002mpl.2_Missense_Mutation_p.A280V|ILF3_uc002mpk.2_Missense_Mutation_p.A280V|ILF3_uc010xli.1_Intron|ILF3_uc002mpo.2_Missense_Mutation_p.A280V|ILF3_uc002mpp.2_Missense_Mutation_p.A101V	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	280	DZF.				M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			GAGTGCCTGGCGTCGGGCATC	0.627													16	29					0	0	0.007413	0	0
CARM1	10498	broad.mit.edu	37	19	11024645	11024645	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:11024645C>T	uc002mpz.2	+	6	888	c.762C>T	c.(760-762)ATC>ATT	p.I254I	CARM1_uc010dxn.2_RNA|CARM1_uc002mqa.2_Silent_p.I37I	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	254					cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						TGGACATCATCATCTCGGAGC	0.607													10	29					0	0	0.006214	0	0
EMR3	84658	broad.mit.edu	37	19	14765866	14765866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:14765866C>T	uc002mzi.3	-	6	653	c.505G>A	c.(505-507)GAA>AAA	p.E169K	EMR3_uc010dzp.2_Missense_Mutation_p.E117K|EMR3_uc010xnv.1_Intron	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	169	Extracellular (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						ACTTTCGATTCCACATCCCGG	0.408													35	65					0	0	0.015359	0	0
CYP4F3	4051	broad.mit.edu	37	19	15769189	15769189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:15769189G>A	uc002nbj.2	+	10	1281	c.1231G>A	c.(1231-1233)GGC>AGC	p.G411S	CYP4F3_uc010xok.1_Missense_Mutation_p.G411S|CYP4F3_uc010xol.1_Missense_Mutation_p.G411S|CYP4F3_uc010xom.1_Missense_Mutation_p.G262S|CYP4F3_uc002nbk.2_Missense_Mutation_p.G411S|CYP4F3_uc010xon.1_Missense_Mutation_p.G121S	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	411					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						GCTCCCAGACGGCCGGGTCAT	0.642													23	55					0	0	0.012319	0	0
OR10H5	284433	broad.mit.edu	37	19	15905786	15905786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:15905786C>T	uc010xos.1	+	1	928	c.928C>T	c.(928-930)CTC>TTC	p.L310F		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTTCACCAAACTCTTTCCACA	0.453													9	24					0	0	0.004482	0	0
CPAMD8	27151	broad.mit.edu	37	19	17088187	17088187	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:17088187G>A	uc002nfb.2	-	15	1922	c.1890C>T	c.(1888-1890)TTC>TTT	p.F630F		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	583						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCTGGTTTTCGAAGAAGGTCT	0.612													38	56					0	0	0.006230	0	0
MYO9B	4650	broad.mit.edu	37	19	17267820	17267820	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:17267820T>G	uc010eak.2	+	7	1453	c.1301T>G	c.(1300-1302)GTG>GGG	p.V434G	MYO9B_uc002nfi.2_Missense_Mutation_p.V434G|MYO9B_uc002nfj.1_Missense_Mutation_p.V434G	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	434	Myosin head-like.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						CCACCCGAGGTGCTGGACACC	0.592													10	27					0	0	0.008291	0	0
KIAA0892	23383	broad.mit.edu	37	19	19466529	19466529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:19466529C>T	uc002nmk.3	+	19	1819	c.1780C>T	c.(1780-1782)CCA>TCA	p.P594S	KIAA0892_uc002nml.3_Missense_Mutation_p.P199S|KIAA0892_uc010ecd.2_Missense_Mutation_p.P199S|KIAA0892_uc010ece.2_Missense_Mutation_p.P170S	NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	594					cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						GACAGACGGTCCACCCCCCGT	0.637													30	66					0	0	0.010818	0	0
LPAR2	9170	broad.mit.edu	37	19	19737823	19737823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:19737823G>A	uc002nnb.3	-	2	410	c.271C>T	c.(271-273)CAC>TAC	p.H91Y	LPAR2_uc002nna.3_Missense_Mutation_p.H91Y|LPAR2_uc002nnc.3_Missense_Mutation_p.H91Y	NM_004720	NP_004711	Q9HBW0	LPAR2_HUMAN	lysophosphatidic acid receptor 2	91	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	cell surface|integral to plasma membrane	LIM domain binding|lipid binding			ovary(1)|breast(1)	2						GGACCAGTGTGGAACATGAGG	0.652													3	13					0	0	0.009096	0	0
ZNF626	199777	broad.mit.edu	37	19	20808398	20808398	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:20808398G>A	uc002npb.1	-	4	435	c.285C>T	c.(283-285)TTC>TTT	p.F95F	ZNF626_uc002npc.1_Silent_p.F19F	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	95					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CCACTTTTTGGAAAGAATCTT	0.348													16	68					0	0	0.006122	0	0
ZNF98	148198	broad.mit.edu	37	19	22575475	22575475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:22575475C>T	uc002nqt.2	-	4	684	c.562G>A	c.(562-564)GAA>AAA	p.E188K		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	188	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				AATGACTTTTCACATTCTTTA	0.308													5	6					0	0	0.001984	0	0
ZNF99	7652	broad.mit.edu	37	19	22939400	22939400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:22939400G>A	uc010xrh.1	-	7	2771	c.2771C>T	c.(2770-2772)GCT>GTT	p.A924V		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTGCTTAAAAGCTTTGCCACA	0.368													14	44					0	0	0.003163	0	0
POP4	10775	broad.mit.edu	37	19	30106215	30106215	+	Silent	SNP	G	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:30106215G>T	uc002nsf.2	+	7	647	c.591G>T	c.(589-591)GGG>GGT	p.G197G	POP4_uc002nsg.2_Silent_p.G116G	NM_006627	NP_006618	O95707	RPP29_HUMAN	processing of precursor 4	197					mRNA cleavage|rRNA processing|tRNA processing	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease P activity|RNA binding				0	Ovarian(5;0.000567)|Breast(6;0.0602)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0623)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.225)			ACATTTACGGGAGCAAATTCC	0.363													13	30					4.3838e-07	4.76014e-07	0.016723	1	0
CCDC123	84902	broad.mit.edu	37	19	33406264	33406264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:33406264G>A	uc002nty.2	-	14	1633	c.1544C>T	c.(1543-1545)TCA>TTA	p.S515L	CCDC123_uc002ntx.2_Missense_Mutation_p.S268L|CCDC123_uc010edg.2_RNA|CCDC123_uc002ntz.1_Missense_Mutation_p.S514L	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123	515	Potential.					centrosome|spindle pole					0	Esophageal squamous(110;0.137)					ATTCACAATTGATTTATGAAC	0.284													24	60					0	0	0.004656	0	0
ATP4A	495	broad.mit.edu	37	19	36051759	36051759	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:36051759T>G	uc002oal.1	-	5	525	c.496A>C	c.(496-498)ACC>CCC	p.T166P		NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	166	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	ATGATGTTGGTGCTCTTGAAT	0.567													47	84					0	0	0.014410	0	0
HAUS5	23354	broad.mit.edu	37	19	36109915	36109915	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:36109915C>T	uc002oam.1	+	13	1194	c.1143C>T	c.(1141-1143)GCC>GCT	p.A381A		NM_015302	NP_056117	O94927	HAUS5_HUMAN	HAUS augmin-like complex, subunit 5	381	Potential.				cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle					0						AGCTACAGGCCAAACAGCAGC	0.632													15	33					0	0	0.004007	0	0
ZNF569	148266	broad.mit.edu	37	19	37904182	37904182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:37904182G>A	uc002ogi.2	-	6	1936	c.1378C>T	c.(1378-1380)CAT>TAT	p.H460Y	ZNF569_uc002ogh.2_Missense_Mutation_p.H301Y|ZNF569_uc002ogj.2_Missense_Mutation_p.H484Y	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	460	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCCCCAGTATGAATTCTCTGG	0.358													12	27					0	0	0.010729	0	0
RYR1	6261	broad.mit.edu	37	19	38980829	38980829	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:38980829C>T	uc002oit.2	+	36	6058	c.5928C>T	c.(5926-5928)CGC>CGT	p.R1976R	RYR1_uc002oiu.2_Silent_p.R1976R	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1976	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGCGGAGCCGCTATGGCCTCC	0.602													11	34					0	0	0.013537	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39914071	39914071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:39914071G>A	uc010xuz.1	+	18	2702	c.2377G>A	c.(2377-2379)GAT>AAT	p.D793N	PLEKHG2_uc010xuy.1_Missense_Mutation_p.D734N|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.D571N	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	793					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GATCCTGGAGGATTCGGATCT	0.647													3	8					0	0	0.004672	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39915878	39915878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:39915878G>A	uc010xuz.1	+	19	4430	c.4105G>A	c.(4105-4107)GAA>AAA	p.E1369K	PLEKHG2_uc010xuy.1_Silent_p.R1191R|PLEKHG2_uc002olj.2_Missense_Mutation_p.E560K|PLEKHG2_uc010xva.1_Missense_Mutation_p.E1147K	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	1369					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CTCCACACAGGAATCTATGGG	0.632													12	34					0	0	0.013537	0	0
FCGBP	8857	broad.mit.edu	37	19	40411717	40411717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:40411717C>T	uc002omp.3	-	7	3919	c.3911G>A	c.(3910-3912)CGA>CAA	p.R1304Q		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1304	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CACACTGACTCGCCCATTACC	0.627													28	82					0	0	0.017118	0	0
CYP2S1	29785	broad.mit.edu	37	19	41700509	41700509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:41700509G>A	uc002opw.2	+	2	293	c.238G>A	c.(238-240)GTC>ATC	p.V80I	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_5'UTR	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	80					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						GCCTGTGGTGGTCCTGGTTGG	0.627													13	39					0	0	0.013537	0	0
CEACAM5	1048	broad.mit.edu	37	19	42231166	42231166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:42231166C>T	uc002ork.2	+	9	2160	c.2039C>T	c.(2038-2040)TCT>TTT	p.S680F	CEACAM5_uc002orj.1_Missense_Mutation_p.S679F|CEACAM5_uc002orl.2_Missense_Mutation_p.S680F	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	680						anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TCTGGAACTTCTCCTGGTCTC	0.498													154	324					0	0	0.014410	0	0
ATP1A3	478	broad.mit.edu	37	19	42474402	42474402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:42474402G>A	uc002osg.2	-	18	2631	c.2477C>T	c.(2476-2478)CCC>CTC	p.P826L	ATP1A3_uc010xwf.1_Missense_Mutation_p.P837L|ATP1A3_uc010xwg.1_Missense_Mutation_p.P796L|ATP1A3_uc010xwh.1_Missense_Mutation_p.P839L|ATP1A3_uc002osh.2_Missense_Mutation_p.P826L	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	826	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CGGGTTCCTGGGCTGTCTCTT	0.617													23	41					0	0	0.018920	0	0
MEGF8	1954	broad.mit.edu	37	19	42840432	42840432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:42840432C>T	uc002otl.3	+	6	1813	c.1178C>T	c.(1177-1179)TCC>TTC	p.S393F	MEGF8_uc002otm.3_5'Flank	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	393	Extracellular (Potential).|Kelch 3.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				ACTGGCCACTCCATGGTGTTC	0.657													11	28					0	0	0.010729	0	0
MEGF8	1954	broad.mit.edu	37	19	42860510	42860510	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:42860510C>A	uc002otl.3	+	25	4961	c.4326C>A	c.(4324-4326)CAC>CAA	p.H1442Q	MEGF8_uc002otm.3_Missense_Mutation_p.H1050Q	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1509	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				GCTTCCTGCACCGCCTGGGCC	0.652													10	23					7.03913e-09	7.67905e-09	0.013537	1	0
PSG3	5671	broad.mit.edu	37	19	43233381	43233381	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:43233381G>A	uc002oue.2	-	5	1269	c.1137C>T	c.(1135-1137)CTC>CTT	p.L379L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.L379L|PSG3_uc010eil.2_Silent_p.L401L	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	379	Ig-like C2-type 3.			Missing (in Ref. 9).	defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GGGGGATAAAGAGCTTTTGTC	0.463													79	190					0	0	0.014410	0	0
KCNN4	3783	broad.mit.edu	37	19	44276176	44276176	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:44276176G>A	uc002oxl.2	-	4	1191	c.795C>T	c.(793-795)ATC>ATT	p.I265I	KCNN4_uc010eiz.2_Silent_p.I178I	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	265	Helical; Name=Segment S6; (Potential).				defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	ACAGGCAGACGATCTTGCCCC	0.557													23	53					0	0	0.004656	0	0
ZNF224	7767	broad.mit.edu	37	19	44610703	44610703	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:44610703C>T	uc002oyh.1	+	6	692	c.390C>T	c.(388-390)TTC>TTT	p.F130F	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	130					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				AAGGTGATTTCCCCTGCCAGA	0.433													19	45					0	0	0.007413	0	0
CEACAM16	388551	broad.mit.edu	37	19	45208946	45208946	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:45208946C>T	uc010xxd.1	+	5	954	c.748C>T	c.(748-750)CTG>TTG	p.L250L	CEACAM16_uc002ozq.2_Silent_p.L309L	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	250										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				GTCCCTCACCCTGTGGTGCGT	0.602													141	300					0	0	0.014410	0	0
PPM1N	147699	broad.mit.edu	37	19	46003763	46003763	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:46003763G>A	uc002pce.2	+	3	1107	c.1107G>A	c.(1105-1107)AGG>AGA	p.R369R	PPM1N_uc002pcf.2_Silent_p.R51R	NM_001080401	NP_001073870	Q8N819	PPM1N_HUMAN	protein phosphatase 1B-like	369							magnesium ion binding|manganese ion binding|phosphoprotein phosphatase activity				0						CAGTTTTCAGGACTCTGGCCT	0.358													7	16					0	0	0.003080	0	0
RPL18	6141	broad.mit.edu	37	19	49120620	49120620	+	Silent	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:49120620A>G	uc002pjq.1	-	3	184	c.151T>C	c.(151-153)TTG>CTG	p.L51L	RPL18_uc002pjp.1_5'UTR|RPL18_uc010xzs.1_Silent_p.L51L|SPHK2_uc002pjr.2_5'Flank|SPHK2_uc010xzt.1_5'Flank|SPHK2_uc002pjs.2_5'Flank	NM_000979	NP_000970	Q07020	RL18_HUMAN	ribosomal protein L18	51					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.89e-05)|all cancers(93;0.00011)|GBM - Glioblastoma multiforme(486;0.0061)|Epithelial(262;0.0154)		CTCATAAACAACCTCTTCAAC	0.567													54	133					0	0	0.014410	0	0
TRPM4	54795	broad.mit.edu	37	19	49705305	49705305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:49705305C>T	uc002pmw.2	+	20	3110	c.3038C>T	c.(3037-3039)TCC>TTC	p.S1013F	TRPM4_uc010emu.2_Missense_Mutation_p.S868F|TRPM4_uc010yak.1_Missense_Mutation_p.S477F|TRPM4_uc002pmx.2_Missense_Mutation_p.S839F|TRPM4_uc010emv.2_Missense_Mutation_p.S898F|TRPM4_uc010yal.1_Missense_Mutation_p.S659F|TRPM4_uc002pmy.2_Missense_Mutation_p.S355F	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	1013	Extracellular (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		ACCTGCGTCTCCCAGTATGCC	0.617													52	91					0	0	0.014410	0	0
TSKS	60385	broad.mit.edu	37	19	50245250	50245250	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:50245250G>A	uc002ppm.2	-	9	1400	c.1389C>T	c.(1387-1389)TCC>TCT	p.S463S		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	463							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		GCTGCTGCAGGGACTCCGTAG	0.627													14	38					0	0	0.004007	0	0
TBC1D17	79735	broad.mit.edu	37	19	50390828	50390828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:50390828G>A	uc002pqo.2	+	14	1692	c.1540G>A	c.(1540-1542)GAG>AAG	p.E514K	TBC1D17_uc010ybg.1_Missense_Mutation_p.E481K|TBC1D17_uc002pqp.2_Missense_Mutation_p.E165K|TBC1D17_uc002pqr.2_Missense_Mutation_p.E165K|TBC1D17_uc002pqs.2_RNA|IL4I1_uc002pqv.1_3'UTR|IL4I1_uc010eno.1_3'UTR|IL4I1_uc002pqw.1_3'UTR	NM_024682	NP_078958	Q9HA65	TBC17_HUMAN	TBC1 domain family, member 17	514	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		all_lung(116;0.000338)|Lung NSC(112;0.000446)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		TCGGCTGTGGGAGGTGGGCCA	0.647													13	28					0	0	0.020292	0	0
SYT3	84258	broad.mit.edu	37	19	51132550	51132550	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:51132550C>T	uc002pst.2	-	4	1915	c.1281_splice	c.e4+1	p.S427_splice	SYT3_uc002psv.2_Splice_Site_p.S427_splice|SYT3_uc010ycd.1_Splice_Site_p.S427_splice	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III							cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		GGGCCACTGACCGAGCCGCCC	0.667													7	12					0	0	0.003080	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52001430	52001430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:52001430C>T	uc002pwx.1	-	5	1303	c.1247G>A	c.(1246-1248)GGG>GAG	p.G416E	SIGLEC12_uc002pww.1_Missense_Mutation_p.G298E|SIGLEC12_uc010eoy.1_Missense_Mutation_p.G143E	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	416	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGTCAGGCTCCCCCAGGTCCA	0.622													19	52					0	0	0.008871	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52131203	52131203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:52131203G>A	uc002pxe.2	-	5	1020	c.881C>T	c.(880-882)TCC>TTC	p.S294F		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	294	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CCCGGTATTGGAGATGGGGGT	0.622													29	70					0	0	0.008361	0	0
FPR3	2359	broad.mit.edu	37	19	52327420	52327420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:52327420G>A	uc002pxt.1	+	2	603	c.419G>A	c.(418-420)AGT>AAT	p.S140N		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	140	Cytoplasmic (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						CGCACCATGAGTCTGGCCAAG	0.488													19	34					0	0	0.008871	0	0
ZNF578	147660	broad.mit.edu	37	19	53014213	53014213	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:53014213C>T	uc002pzp.3	+	6	823	c.579C>T	c.(577-579)TCC>TCT	p.S193S		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		TTTCAACATCCCAAAGAATTT	0.368													34	64					0	0	0.015359	0	0
MIR519B	574469	broad.mit.edu	37	19	54198487	54198487	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:54198487G>A	hsa-mir-519b|MI0003151	+			c.21G>A			MIR525_hsa-mir-525|MI0003152_5'Flank																	0						CCCTCTAGAGGGAAGCGCTTT	0.408													38	76					0	0	0.009718	0	0
NLRP12	91662	broad.mit.edu	37	19	54327215	54327215	+	Silent	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:54327215A>G	uc002qch.3	-	1	434	c.214T>C	c.(214-216)TTG>CTG	p.L72L	NLRP12_uc002qci.3_Silent_p.L72L|NLRP12_uc002qcj.3_Silent_p.L72L|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.L72L	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	72	DAPIN.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CTGAGAGCCAACCTCCAGGCC	0.617													54	100					0	0	0.014410	0	0
TTYH1	57348	broad.mit.edu	37	19	54940485	54940485	+	Silent	SNP	G	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:54940485G>C	uc002qfq.2	+	6	827	c.735G>C	c.(733-735)GTG>GTC	p.V245V	TTYH1_uc010yey.1_Silent_p.V294V|TTYH1_uc002qfr.2_Silent_p.V245V|TTYH1_uc002qft.2_Silent_p.V245V|TTYH1_uc002qfu.1_Silent_p.V157V	NM_020659	NP_065710	Q9H313	TTYH1_HUMAN	tweety 1 isoform 1	245	Helical; Name=4; (Potential).				cell adhesion	chloride channel complex|plasma membrane	chloride channel activity|iron ion transmembrane transporter activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0767)		CCCACTCTAGGATGACAGTCA	0.642													30	71					0	0	0.010818	0	0
LILRB4	11006	broad.mit.edu	37	19	55179409	55179409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:55179409C>T	uc002qgp.2	+	12	1648	c.1286C>T	c.(1285-1287)CCA>CTA	p.P429L	LILRB4_uc002qgq.2_Missense_Mutation_p.P428L|LILRB4_uc002qgr.2_Missense_Mutation_p.P471L|LILRB4_uc010ert.2_Missense_Mutation_p.P470L|LILRB4_uc010eru.2_Missense_Mutation_p.P459L	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	429	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GAGCCTCCTCCATCCCAGGAA	0.617													29	79					0	0	0.010818	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55341405	55341405	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:55341405G>A	uc002qhk.3	+	8	1191	c.1128G>A	c.(1126-1128)GAG>GAA	p.E376E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Silent_p.E301E|KIR3DL1_uc010esf.2_Silent_p.E281E|KIR3DL1_uc010yfo.1_Silent_p.E318E|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_5'Flank|KIR2DS4_uc002qhm.1_5'Flank	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	376	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		TGGACCAAGAGCCTGCAGGGA	0.527													45	112					0	0	0.014410	0	0
NLRP11	204801	broad.mit.edu	37	19	56321367	56321367	+	Silent	SNP	G	A	A	rs149856648		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:56321367G>A	uc010ygf.1	-	5	1320	c.609C>T	c.(607-609)ATC>ATT	p.I203I	NLRP11_uc002qlz.2_Silent_p.I104I|NLRP11_uc002qmb.2_Silent_p.I104I|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	203	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AGTCCTTGGCGATTAGCTCAG	0.512													17	27					0	0	0.004007	0	0
NLRP5	126206	broad.mit.edu	37	19	56515201	56515201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:56515201C>T	uc002qmj.2	+	2	182	c.182C>T	c.(181-183)TCC>TTC	p.S61F	NLRP5_uc002qmi.2_Missense_Mutation_p.S61F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	61	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTCACCTTTTCCAGCTACGGG	0.433													29	86					0	0	0.009535	0	0
PEG3	5178	broad.mit.edu	37	19	57325354	57325354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:57325354C>T	uc002qnu.2	-	7	4807	c.4456G>A	c.(4456-4458)GGA>AGA	p.G1486R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.G1457R|PEG3_uc002qnv.2_Missense_Mutation_p.G1486R|PEG3_uc002qnw.2_Missense_Mutation_p.G1362R|PEG3_uc002qnx.2_Missense_Mutation_p.G1360R|PEG3_uc010etr.2_Missense_Mutation_p.G1486R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1486	Glu-rich.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCTTCAATTCCCACACCGTCA	0.502													39	101					0	0	0.006230	0	0
PEG3	5178	broad.mit.edu	37	19	57328195	57328195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:57328195C>T	uc002qnu.2	-	7	1966	c.1615G>A	c.(1615-1617)GAA>AAA	p.E539K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E510K|PEG3_uc002qnv.2_Missense_Mutation_p.E539K|PEG3_uc002qnw.2_Missense_Mutation_p.E415K|PEG3_uc002qnx.2_Missense_Mutation_p.E413K|PEG3_uc010etr.2_Missense_Mutation_p.E539K	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	539					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCCTCACATTCCTGATTCTTA	0.443													34	98					0	0	0.005524	0	0
USP29	57663	broad.mit.edu	37	19	57640569	57640569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:57640569G>A	uc002qny.2	+	4	882	c.526G>A	c.(526-528)GAT>AAT	p.D176N		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	176					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ACTATCATCTGATGTACAGAC	0.353													27	57					0	0	0.005443	0	0
ZNF749	388567	broad.mit.edu	37	19	57956182	57956182	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr19:57956182T>C	uc002qoq.2	+	3	1920	c.1666T>C	c.(1666-1668)TAT>CAT	p.Y556H	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	556	C2H2-type 13; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		GCCAAGGCCTTATGTGTGTAG	0.453													24	47					0	0	0.014323	0	0
SNTG2	54221	broad.mit.edu	37	2	1243537	1243537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:1243537C>T	uc002qwq.2	+	11	1005	c.877C>T	c.(877-879)CCT>TCT	p.P293S	SNTG2_uc010ewi.2_Missense_Mutation_p.P166S	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	293					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		ATGCTGCTCTCCTTCCGACCA	0.478													7	16					0	0	0.003080	0	0
TPO	7173	broad.mit.edu	37	2	1520688	1520688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:1520688C>T	uc002qww.2	+	15	2643	c.2552C>T	c.(2551-2553)TCC>TTC	p.S851F	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.S794F|TPO_uc002qwr.2_Missense_Mutation_p.S851F|TPO_uc002qwx.2_Missense_Mutation_p.S794F|TPO_uc010yio.1_Missense_Mutation_p.S678F|TPO_uc010yip.1_Missense_Mutation_p.S807F|TPO_uc002qwy.1_Missense_Mutation_p.S147F|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	851	Helical; (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	ACTTGGATCTCCATGTCGCTG	0.572													20	38					0	0	0.012319	0	0
APOB	338	broad.mit.edu	37	2	21225676	21225676	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:21225676C>T	uc002red.2	-	29	12746	c.12618G>A	c.(12616-12618)GGG>GGA	p.G4206G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4206					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCCCAGGTTTCCCCGGAAACT	0.438													154	364					0	0	0.014410	0	0
APOB	338	broad.mit.edu	37	2	21235180	21235180	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:21235180C>T	uc002red.2	-	26	4688	c.4560G>A	c.(4558-4560)CTG>CTA	p.L1520L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1520					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGTTAAACCTCAGGTTGGACT	0.507													129	340					0	0	0.014410	0	0
APOB	338	broad.mit.edu	37	2	21252650	21252650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:21252650C>T	uc002red.2	-	12	1606	c.1478G>A	c.(1477-1479)GGA>GAA	p.G493E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	493	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GCCCATATTTCCAATGACCTG	0.428													165	441					0	0	0.014410	0	0
ATAD2B	54454	broad.mit.edu	37	2	24021187	24021187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:24021187G>A	uc002rek.3	-	19	2755	c.2461C>T	c.(2461-2463)CGT>TGT	p.R821C	ATAD2B_uc010yki.1_RNA|ATAD2B_uc002rei.3_Missense_Mutation_p.R66C|ATAD2B_uc002rej.3_5'UTR	NM_017552	NP_060022	Q9ULI0	ATD2B_HUMAN	ATPase family, AAA domain containing 2B	821							ATP binding|nucleoside-triphosphatase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGAGCTTCACGAAAAATCTAA	0.363													10	20					0	0	0.008291	0	0
C2orf39	92749	broad.mit.edu	37	2	26677552	26677552	+	Missense_Mutation	SNP	C	T	T	rs139106371		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:26677552C>T	uc002rhg.2	+	15	2031	c.1957C>T	c.(1957-1959)CGT>TGT	p.R653C		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	653											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAAGAATGTGCGTGACAACTC	0.587													6	84					0	0	0.001984	0	0
TCF23	150921	broad.mit.edu	37	2	27373171	27373171	+	Missense_Mutation	SNP	G	A	A	rs138845716		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:27373171G>A	uc010ylg.1	+	2	403	c.403G>A	c.(403-405)GAG>AAG	p.E135K		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	135					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACTCGGCCACGAGTTGCCTGG	0.642													54	150					0	0	0.014410	0	0
SLC5A6	8884	broad.mit.edu	37	2	27427331	27427331	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:27427331G>A	uc002rjd.2	-	9	1394	c.1003C>T	c.(1003-1005)CAG>TAG	p.Q335*	SLC5A6_uc010eyv.1_Nonsense_Mutation_p.Q335*	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	335					biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	CTTCTCACCTGGTCTGGGGCT	0.532													14	48					0	0	0.020292	0	0
C2orf71	388939	broad.mit.edu	37	2	29293979	29293979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:29293979G>A	uc002rmt.1	-	1	3149	c.3149C>T	c.(3148-3150)CCA>CTA	p.P1050L		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	1050	Pro-rich.				response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CTGGTGCGGTGGGGAAGTTCG	0.682													24	43					0	0	0.021523	0	0
CAPN13	92291	broad.mit.edu	37	2	30954249	30954249	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:30954249G>A	uc002rnn.2	-	20	2120	c.1944C>T	c.(1942-1944)CTC>CTT	p.L648L	CAPN13_uc002rnm.2_RNA	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	648	EF-hand 2.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					CATCCTTAGAGAGGTTGCGGA	0.557													8	19					0	0	0.004482	0	0
EHD3	30845	broad.mit.edu	37	2	31472268	31472268	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:31472268C>T	uc002rnu.2	+	3	1044	c.436C>T	c.(436-438)CTG>TTG	p.L146L	EHD3_uc010ymt.1_Silent_p.L146L	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	146					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					TAACCCTGTGCTGGAGAGCAT	0.597													14	35					0	0	0.003163	0	0
XDH	7498	broad.mit.edu	37	2	31571809	31571809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:31571809G>A	uc002rnv.1	-	27	3086	c.3007C>T	c.(3007-3009)CCC>TCC	p.P1003S		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1003					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AACTTGGTGGGAATTATGCAC	0.388													11	20					0	0	0.013537	0	0
XDH	7498	broad.mit.edu	37	2	31611135	31611135	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:31611135C>T	uc002rnv.1	-	7	601	c.522G>A	c.(520-522)GGG>GGA	p.G174G		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	174					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTGGATTATTCCCATCTCCTC	0.443													26	64					0	0	0.008361	0	0
ALMS1	7840	broad.mit.edu	37	2	73680499	73680499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:73680499C>T	uc002sje.1	+	10	6959	c.6848C>T	c.(6847-6849)CCC>CTC	p.P2283L	ALMS1_uc002sjf.1_Missense_Mutation_p.P2239L|ALMS1_uc002sjg.2_Missense_Mutation_p.P1669L|ALMS1_uc002sjh.1_Missense_Mutation_p.P1669L	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2281					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TTTCCTGCTCCCCTTGCCCGT	0.398													14	24					0	0	0.016723	0	0
NAT8B	51471	broad.mit.edu	37	2	73928207	73928207	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:73928207A>G	uc002sjk.1	-	2	261	c.226T>C	c.(226-228)TTC>CTC	p.F76L		NM_016347	NP_057431	Q9UHF3	NAT8B_HUMAN	N-acetyltransferase 8B	76	N-acetyltransferase.				gastrulation with mouth forming second	integral to membrane	N-acetyltransferase activity				0						TTGGCAAGGAACCACAGGGCA	0.557													19	50					0	0	0.006122	0	0
CTNNA2	1496	broad.mit.edu	37	2	80646705	80646705	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:80646705G>A	uc010ysh.1	+	8	1274	c.1269G>A	c.(1267-1269)GAG>GAA	p.E423E	CTNNA2_uc010yse.1_Silent_p.E423E|CTNNA2_uc010ysf.1_Silent_p.E423E|CTNNA2_uc010ysg.1_Silent_p.E423E|CTNNA2_uc010ysi.1_Silent_p.E55E	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	423					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TTTTCCGTGAGCATGCCAACA	0.443													24	47					0	0	0.008361	0	0
ACTR1B	10120	broad.mit.edu	37	2	98275374	98275374	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:98275374G>A	uc002syb.2	-	5	616	c.408C>T	c.(406-408)GCC>GCT	p.A136A		NM_005735	NP_005726	P42025	ACTY_HUMAN	ARP1 actin-related protein 1 homolog B,	136						centrosome|dynactin complex	ATP binding|protein binding			skin(1)	1						AGATGAACAGGGCCGGCACGT	0.617													31	75					0	0	0.010818	0	0
VWA3B	200403	broad.mit.edu	37	2	98914416	98914416	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:98914416C>T	uc002syo.2	+	24	3468	c.3204C>T	c.(3202-3204)TTC>TTT	p.F1068F	VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Silent_p.F725F|VWA3B_uc002syp.1_Silent_p.F460F|VWA3B_uc002syq.1_Silent_p.F344F|VWA3B_uc002syr.1_Silent_p.F385F|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1068										ovary(3)|large_intestine(2)|skin(1)	6						TGGTGGGCTTCAGTTACGGAG	0.537													25	53					0	0	0.004656	0	0
C2orf55	343990	broad.mit.edu	37	2	99454685	99454685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:99454685G>A	uc002szf.1	-	3	430	c.136C>T	c.(136-138)CCG>TCG	p.P46S		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	46											0						GTGGACGACGGCGATTCTTTT	0.403													11	24					0	0	0.010729	0	0
IL18RAP	8807	broad.mit.edu	37	2	103059758	103059758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:103059758G>A	uc002tbx.2	+	8	1379	c.895G>A	c.(895-897)GAA>AAA	p.E299K	IL18RAP_uc010fiz.2_Missense_Mutation_p.E157K	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	299	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CCTAGAGTGGGAAGTCTCAGT	0.393													24	38					0	0	0.018920	0	0
RGPD4	285190	broad.mit.edu	37	2	108488640	108488640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:108488640C>T	uc010ywk.1	+	20	4262	c.4180C>T	c.(4180-4182)CGT>TGT	p.R1394C	RGPD4_uc002tdu.2_Missense_Mutation_p.R581C|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1394	RanBD1 2.				intracellular transport		binding			skin(2)	2						TAAGCAAGTTCGTATAGTGAT	0.358													101	224					0	0	0.014410	0	0
ANAPC1	64682	broad.mit.edu	37	2	112621364	112621364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:112621364G>A	uc002thi.2	-	9	1187	c.940C>T	c.(940-942)CCT>TCT	p.P314S		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	314					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						GAAGTCACAGGGGAATCTCCT	0.493													11	32					0	0	0.013537	0	0
MERTK	10461	broad.mit.edu	37	2	112786409	112786409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:112786409G>A	uc002thk.1	+	19	3090	c.2968G>A	c.(2968-2970)GAC>AAC	p.D990N	MERTK_uc002thl.1_Missense_Mutation_p.D814N	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	990	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						GTTTGCTGACGACTCCTCAGA	0.507													17	51					0	0	0.006122	0	0
CHCHD5	84269	broad.mit.edu	37	2	113346455	113346455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:113346455C>T	uc002thz.1	+	4	511	c.322C>T	c.(322-324)CCT>TCT	p.P108S	CHCHD5_uc002tia.2_3'UTR	NM_032309	NP_115685	Q9BSY4	CHCH5_HUMAN	coiled-coil-helix-coiled-coil-helix domain	108											0						ACAGCCACTTCCTGCCTCCTG	0.597													5	23					0	0	0.014758	0	0
MYO7B	4648	broad.mit.edu	37	2	128327441	128327441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:128327441C>T	uc002top.2	+	6	601	c.548C>T	c.(547-549)TCG>TTG	p.S183L		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	183	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GGCCAGCATTCGTGGATTGAG	0.632													16	19					0	0	0.003163	0	0
CCDC74A	90557	broad.mit.edu	37	2	132289353	132289353	+	Missense_Mutation	SNP	C	T	T	rs145934024		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:132289353C>T	uc002tta.2	+	4	713	c.661C>T	c.(661-663)CCT>TCT	p.P221S	CCDC74A_uc002ttb.2_Missense_Mutation_p.P155S	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	221								p.P221S(1)		skin(1)	1						GGACAAAGTTCCTGGGGTACA	0.577													43	22					0	0	0.014410	0	0
YSK4	80122	broad.mit.edu	37	2	135743584	135743584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:135743584G>A	uc002tue.1	-	7	2889	c.2858C>T	c.(2857-2859)TCC>TTC	p.S953F	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.S840F|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.S681F|YSK4_uc002tui.3_Missense_Mutation_p.S970F	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	953							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		AATTTCTTGGGAAATTGAATT	0.308													13	24					0	0	0.020292	0	0
ITGB6	3694	broad.mit.edu	37	2	160964243	160964243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:160964243G>A	uc002ubh.2	-	14	2231	c.2215C>T	c.(2215-2217)CGT>TGT	p.R739C	ITGB6_uc010fou.2_Missense_Mutation_p.R739C|ITGB6_uc010zcq.1_Missense_Mutation_p.R697C|ITGB6_uc010fov.1_Missense_Mutation_p.R739C	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	739	Cytoplasmic (Potential).|Interaction with HAX1.				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						ACTTCTTTACGATCATGAAAT	0.458													23	62					0	0	0.018920	0	0
FIGN	55137	broad.mit.edu	37	2	164466641	164466641	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:164466641G>A	uc002uck.1	-	3	2012	c.1701C>T	c.(1699-1701)ATC>ATT	p.I567I		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	567						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						AAGAGGCATGGATAATTTTCT	0.478													11	36					0	0	0.010729	0	0
XIRP2	129446	broad.mit.edu	37	2	168101126	168101126	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:168101126A>C	uc002udx.2	+	8	3242	c.3224A>C	c.(3223-3225)GAA>GCA	p.E1075A	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E900A|XIRP2_uc010fpq.2_Missense_Mutation_p.E853A|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	900					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATGTGGAAGAAACAGAAAGT	0.348													7	15					0	0	0.001984	0	0
XIRP2	129446	broad.mit.edu	37	2	168104432	168104432	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:168104432A>G	uc002udx.2	+	8	6548	c.6530A>G	c.(6529-6531)GAC>GGC	p.D2177G	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D2002G|XIRP2_uc010fpq.2_Missense_Mutation_p.D1955G|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2002					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GGAACTTACGACCTTTCAGGG	0.368													14	32					0	0	0.006122	0	0
B3GALT1	8708	broad.mit.edu	37	2	168726198	168726198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:168726198C>T	uc002udz.1	+	2	1000	c.649C>T	c.(649-651)CGC>TGC	p.R217C		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	217	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						TCGGGATGTCCGCAGTAAGTG	0.453													19	41					0	0	0.014323	0	0
MYO3B	140469	broad.mit.edu	37	2	171238569	171238569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:171238569G>A	uc002ufy.2	+	10	1158	c.1015G>A	c.(1015-1017)GCT>ACT	p.A339T	MYO3B_uc002ufv.2_Missense_Mutation_p.A326T|MYO3B_uc010fqb.1_Missense_Mutation_p.A326T|MYO3B_uc002ufz.2_Missense_Mutation_p.A339T|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Missense_Mutation_p.A326T|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	339	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						TGTGGAAGATGCTGAAAAATA	0.363													10	32					0	0	0.013537	0	0
MYO3B	140469	broad.mit.edu	37	2	171371487	171371487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:171371487G>A	uc002ufy.2	+	29	3570	c.3427G>A	c.(3427-3429)GGA>AGA	p.G1143R	MYO3B_uc002ufv.2_Missense_Mutation_p.G1130R|MYO3B_uc010fqb.1_Missense_Mutation_p.G1130R|MYO3B_uc002ufz.2_Missense_Mutation_p.G1116R|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	1143					response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						AGGTACGAGGGGAAGTGCCGA	0.502													16	38					0	0	0.006122	0	0
ITGA6	3655	broad.mit.edu	37	2	173334104	173334104	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:173334104G>A	uc002uhp.1	+	4	842	c.639G>A	c.(637-639)TGG>TGA	p.W213*	ITGA6_uc010fqk.1_Nonsense_Mutation_p.W99*|ITGA6_uc010zdy.1_Nonsense_Mutation_p.W99*|ITGA6_uc002uho.1_Nonsense_Mutation_p.W213*|ITGA6_uc010fql.2_5'Flank	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	213	Extracellular (Potential).|FG-GAP 3.				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			CTTATAACTGGAAAGGTATGA	0.358													19	36					0	0	0.010504	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173848292	173848292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:173848292C>T	uc002uhv.3	+	11	1260	c.1073C>T	c.(1072-1074)TCC>TTC	p.S358F	RAPGEF4_uc002uhu.2_Missense_Mutation_p.S358F|RAPGEF4_uc002uhw.3_Missense_Mutation_p.S214F|RAPGEF4_uc010zec.1_Missense_Mutation_p.S205F|RAPGEF4_uc010zed.1_Missense_Mutation_p.S187F|RAPGEF4_uc010zee.1_Missense_Mutation_p.S205F|RAPGEF4_uc010fqo.2_Missense_Mutation_p.S187F|RAPGEF4_uc010zef.1_Missense_Mutation_p.S138F|RAPGEF4_uc010zeg.1_Missense_Mutation_p.S185F|RAPGEF4_uc010fqp.1_Missense_Mutation_p.S138F|RAPGEF4_uc010zeh.1_Missense_Mutation_p.S138F	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	358	cAMP 2.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			AAAGCCTTATCCCATCTTTCT	0.393													26	58					0	0	0.008361	0	0
TTN	7273	broad.mit.edu	37	2	179408103	179408103	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:179408103G>A	uc010zfg.1	-	296	89117	c.88893C>T	c.(88891-88893)GTC>GTT	p.V29631V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V23326V|TTN_uc010zfi.1_Silent_p.V23259V|TTN_uc010zfj.1_Silent_p.V23134V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30558							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACTTCTGAGACCAGTACTG	0.458													11	37					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179444756	179444756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:179444756C>T	uc010zfg.1	-	267	59778	c.59554G>A	c.(59554-59556)GAG>AAG	p.E19852K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E13547K|TTN_uc010zfi.1_Missense_Mutation_p.E13480K|TTN_uc010zfj.1_Missense_Mutation_p.E13355K|uc002umv.1_3'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20779							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATTTTCCCTCCTCCAAATTA	0.438													47	99					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179603068	179603068	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:179603068C>T	uc010zfg.1	-	46	10604	c.10380G>A	c.(10378-10380)AGG>AGA	p.R3460R	TTN_uc010zfh.1_Silent_p.R4533R|TTN_uc010zfi.1_Silent_p.R4466R|TTN_uc010zfj.1_Silent_p.R4341R|TTN_uc002umz.1_Silent_p.R121R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4387							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTCGATTTTCCTCTTGATCA	0.468													10	22					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179605128	179605128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:179605128G>A	uc010zfh.1	-	46	12543	c.12319C>T	c.(12319-12321)CCT>TCT	p.P4107S	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.P4040S|TTN_uc010zfj.1_Missense_Mutation_p.P3915S|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	4035							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGACATCAGGACTCTGGAGA	0.463													7	31					0	0	0.001984	0	0
ZNF385B	151126	broad.mit.edu	37	2	180311384	180311384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:180311384G>A	uc002unn.3	-	7	1388	c.784C>T	c.(784-786)CCC>TCC	p.P262S	ZNF385B_uc002unj.2_Missense_Mutation_p.P160S|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Missense_Mutation_p.P159S|ZNF385B_uc002unm.2_Missense_Mutation_p.P186S	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	262						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			CTCTTGGAGGGAGAAGTGGCT	0.463													35	67					0	0	0.021022	0	0
ITGA4	3676	broad.mit.edu	37	2	182360652	182360652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:182360652C>T	uc002unu.2	+	14	2291	c.1528C>T	c.(1528-1530)CCA>TCA	p.P510S	ITGA4_uc010frj.1_5'Flank	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	510	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	CAAGGAAGTTCCAGGTTACAT	0.423													18	60					0	0	0.008871	0	0
COL5A2	1290	broad.mit.edu	37	2	189929782	189929782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:189929782C>T	uc002uqk.2	-	24	1840	c.1565G>A	c.(1564-1566)GGT>GAT	p.G522D	COL5A2_uc010frx.2_Missense_Mutation_p.G98D	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	522					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GCCAGGAGCACCCTACAAATG	0.403													6	18					0	0	0.001984	0	0
DNAH7	56171	broad.mit.edu	37	2	196746717	196746717	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:196746717C>T	uc002utj.3	-	36	5865	c.5764_splice	c.e36-1	p.G1922_splice		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7						ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTCCTATTCCCTGTTTATAAT	0.338													8	15					0	0	0.003080	0	0
DNAH7	56171	broad.mit.edu	37	2	196788411	196788411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:196788411G>A	uc002utj.3	-	23	3834	c.3733C>T	c.(3733-3735)CAT>TAT	p.H1245Y		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1245	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCTCTAGCATGGACATCCAGT	0.413													9	40					0	0	0.004482	0	0
BOLL	66037	broad.mit.edu	37	2	198636606	198636606	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:198636606C>T	uc002uus.2	-	6	763	c.453G>A	c.(451-453)GAG>GAA	p.E151E	uc002uup.2_RNA|BOLL_uc002uur.2_Silent_p.E157E|BOLL_uc002uut.2_Silent_p.E163E|BOLL_uc010zha.1_Silent_p.E42E|BOLL_uc002uuu.1_Silent_p.E157E	NM_033030	NP_149019	Q8N9W6	BOLL_HUMAN	boule isoform 2	151					cell differentiation|meiosis|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm	nucleotide binding|protein binding|RNA binding|translation activator activity			ovary(2)	2						CCGAAGTTACCTCTGGAGTAT	0.338													11	25					0	0	0.010729	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170939	207170939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:207170939C>T	uc002vbp.2	+	5	1937	c.1687C>T	c.(1687-1689)CGG>TGG	p.R563W		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	563							nucleic acid binding|zinc ion binding			ovary(3)	3						AACAAAACTTCGGAAGAAGGC	0.438													12	24					0	0	0.013537	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171375	207171375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:207171375C>T	uc002vbp.2	+	5	2373	c.2123C>T	c.(2122-2124)TCT>TTT	p.S708F		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	708							nucleic acid binding|zinc ion binding			ovary(3)	3						TCTCTGAGTTCTGATTCTCCG	0.408													18	36					0	0	0.006122	0	0
FZD5	7855	broad.mit.edu	37	2	208632177	208632177	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:208632177G>A	uc002vcj.2	-	2	1697	c.1287C>T	c.(1285-1287)ATC>ATT	p.I429I		NM_003468	NP_003459	Q13467	FZD5_HUMAN	frizzled 5 precursor	429	Cytoplasmic (Potential).				angiogenesis|anterior/posterior axis specification, embryo|axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to molecule of bacterial origin|embryonic camera-type eye development|gonad development|labyrinthine layer blood vessel development|positive regulation of interferon-gamma production|positive regulation of transcription from RNA polymerase II promoter|post-embryonic camera-type eye development|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell projection|cell surface|Golgi membrane|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|protein kinase binding|Wnt-protein binding			ovary(2)|lung(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.13)|Lung(261;0.134)		TGACGCTGCGGATGCGGAAGA	0.647													11	30					0	0	0.008291	0	0
IDH1	3417	broad.mit.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	A	A	rs121913499		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:209113113G>A	uc002vcs.2	-	4	640	c.394C>T	c.(394-396)CGT>TGT	p.R132C	IDH1_uc002vct.2_Missense_Mutation_p.R132C|IDH1_uc002vcu.2_Missense_Mutation_p.R132C	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TAAGCATGACGACCTATGATG	0.398			Mis		gliobastoma 								17	51					0	0	0.004007	0	0
UNC80	285175	broad.mit.edu	37	2	210658531	210658531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:210658531G>A	uc010zjc.1	+	7	966	c.886G>A	c.(886-888)GAT>AAT	p.D296N	UNC80_uc002vdj.1_Missense_Mutation_p.D296N	NM_032504	NP_115893	Q8N2C7	UNC80_HUMAN	chromosome 2 open reading frame 21 isoform 1	296						integral to membrane					0						AAACTCCTTTGATGGAAGTCT	0.493													21	28					0	0	0.010504	0	0
TNS1	7145	broad.mit.edu	37	2	218712982	218712982	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:218712982T>C	uc002vgt.2	-	17	2281	c.1883A>G	c.(1882-1884)CAG>CGG	p.Q628R	TNS1_uc002vgr.2_Missense_Mutation_p.Q628R|TNS1_uc002vgs.2_Missense_Mutation_p.Q628R|TNS1_uc010zjv.1_Missense_Mutation_p.Q628R|TNS1_uc010fvj.1_Missense_Mutation_p.Q696R|TNS1_uc010fvk.1_Missense_Mutation_p.Q753R|TNS1_uc010fvi.1_Missense_Mutation_p.Q315R	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	628						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		TGGGGGCAGCTGGGGTTCAGC	0.557													3	52					0	0	0.004672	0	0
PID1	55022	broad.mit.edu	37	2	229890744	229890744	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:229890744C>T	uc002vpr.3	-	3	395	c.357G>A	c.(355-357)TGG>TGA	p.W119*	PID1_uc002vps.3_Nonsense_Mutation_p.W117*|PID1_uc002vpt.3_Nonsense_Mutation_p.W86*|PID1_uc002vpu.3_Nonsense_Mutation_p.W37*	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	119	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		TGTGCTTCTTCCAGAGCTCAA	0.537													15	53					0	0	0.004990	0	0
TRIP12	9320	broad.mit.edu	37	2	230693983	230693983	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:230693983A>C	uc002vpw.1	-	7	1341	c.1232T>G	c.(1231-1233)CTT>CGT	p.L411R	TRIP12_uc002vpx.1_Missense_Mutation_p.L459R|TRIP12_uc002vpy.1_Missense_Mutation_p.L114R|TRIP12_uc010zlz.1_Intron|TRIP12_uc010fxh.1_Missense_Mutation_p.L417R	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	411					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		GTGAGGGGGAAGACCCCTTGC	0.408													16	40					0	0	0.004990	0	0
NEU2	4759	broad.mit.edu	37	2	233899687	233899687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:233899687G>A	uc010zmn.1	+	2	1063	c.1063G>A	c.(1063-1065)GAA>AAA	p.E355K		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	355		Potential.					exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		GTGTCTGTACGAAGCCAATGA	0.577													59	163					0	0	0.014410	0	0
INPP5D	3635	broad.mit.edu	37	2	234078703	234078703	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:234078703T>C	uc010zmo.1	+	14	1837	c.1684T>C	c.(1684-1686)TTC>CTC	p.F562L	INPP5D_uc010zmp.1_Missense_Mutation_p.F561L	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	562					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CATTCTCCGGTTCCTGGCCCT	0.532													37	109					0	0	0.010771	0	0
DNAJB3	414061	broad.mit.edu	37	2	234652280	234652280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:234652280C>T	uc002vuz.2	-	1	382	c.283G>A	c.(283-285)GAC>AAC	p.D95N	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	95					protein folding		heat shock protein binding|unfolded protein binding				0						TCGGCTGGGTCGCGGAAGCTG	0.627													35	91					0	0	0.005524	0	0
UGT1A5	54579	broad.mit.edu	37	2	234680923	234680923	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr2:234680923C>T	uc002vuw.2	+	5	1323	c.1323C>T	c.(1321-1323)ATC>ATT	p.I441I	UGT1A8_uc002vup.2_Silent_p.I437I|UGT1A10_uc002vur.2_Silent_p.I437I|UGT1A9_uc002vus.2_Silent_p.I437I|UGT1A7_uc002vut.2_Silent_p.I437I|UGT1A6_uc002vuu.2_Silent_p.I172I|UGT1A6_uc002vuv.3_Silent_p.I439I|UGT1A4_uc002vux.2_Silent_p.I441I|UGT1A3_uc002vuy.2_Silent_p.I441I|UGT1A9_uc002vva.2_RNA|UGT1A1_uc002vvb.2_Silent_p.I440I	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	441					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		AGGAGAACATCATGCGCCTCT	0.537													8	37					0	0	0.003080	0	0
TGM3	7053	broad.mit.edu	37	20	2308917	2308917	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:2308917C>T	uc002wfx.3	+	9	1336	c.1239C>T	c.(1237-1239)TCC>TCT	p.S413S		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	413					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	GGAAGAATTCCGTGAACAGTC	0.537													15	74					0	0	0.003163	0	0
TGM6	343641	broad.mit.edu	37	20	2375937	2375937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:2375937G>A	uc002wfy.1	+	3	340	c.279G>A	c.(277-279)ATG>ATA	p.M93I	TGM6_uc010gal.1_Missense_Mutation_p.M93I	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	93					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	AGGCTCAGATGGAGAAAACTC	0.612													17	31					0	0	0.004007	0	0
TMC2	117532	broad.mit.edu	37	20	2552872	2552872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:2552872G>A	uc002wgf.1	+	5	617	c.602G>A	c.(601-603)GGG>GAG	p.G201E	TMC2_uc002wgg.1_Missense_Mutation_p.G185E|TMC2_uc010zpw.1_Missense_Mutation_p.G33E|TMC2_uc010zpx.1_Missense_Mutation_p.G32E	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	201	Arg/Asp/Glu/Lys-rich (highly charged).|Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						TTGGGAAAGGGGAAAGGCAAG	0.488													12	91					0	0	0.013537	0	0
SLC4A11	83959	broad.mit.edu	37	20	3208477	3208477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:3208477C>T	uc002wig.2	-	19	2680	c.2632G>A	c.(2632-2634)GAA>AAA	p.E878K	SLC4A11_uc010zqe.1_Missense_Mutation_p.E905K|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Missense_Mutation_p.E862K	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	878	Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						TACTTGGCTTCAATGATTCGG	0.557													16	40					0	0	0.006122	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3672569	3672569	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:3672569G>A	uc002wja.2	-	16	4311	c.4311C>T	c.(4309-4311)ATC>ATT	p.I1437I	SIGLEC1_uc002wjb.1_Silent_p.I76I|SIGLEC1_uc002wiz.3_Silent_p.I1437I	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	1437	Ig-like C2-type 14.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GCAACCGCCCGATGGTGCTGA	0.592													18	81					0	0	0.008871	0	0
JAG1	182	broad.mit.edu	37	20	10621857	10621857	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:10621857C>T	uc002wnw.2	-	24	3468	c.2952G>A	c.(2950-2952)AGG>AGA	p.R984R		NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	984	Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						TATTCAAATTCCTCAATTCAC	0.393									Alagille_Syndrome				17	53					0	0	0.004007	0	0
KIF16B	55614	broad.mit.edu	37	20	16354938	16354938	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:16354938G>C	uc002wpg.1	-	20	3472	c.3314C>G	c.(3313-3315)GCT>GGT	p.A1105G	KIF16B_uc002wpe.1_Missense_Mutation_p.A487G|KIF16B_uc002wpf.1_Missense_Mutation_p.A487G|KIF16B_uc010gch.1_Intron|KIF16B_uc010gci.1_Missense_Mutation_p.A1105G	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	1105					cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TGATTTTTCAGCACTGACTGG	0.473													29	72					0	0	0.008361	0	0
CRNKL1	51340	broad.mit.edu	37	20	20033087	20033087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:20033087G>A	uc002wrs.2	-	2	415	c.383C>T	c.(382-384)TCC>TTC	p.S128F	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Missense_Mutation_p.S116F	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	128					spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						AAACAAACAGGATCTCGGAAC	0.587													57	58					0	0	0.014410	0	0
CST1	1469	broad.mit.edu	37	20	23729758	23729758	+	Silent	SNP	C	T	T	rs146690838	byFrequency	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:23729758C>T	uc002wtp.2	-	2	308	c.237G>A	c.(235-237)GGG>GGA	p.G79G		NM_001898	NP_001889	P01037	CYTN_HUMAN	cystatin SN precursor	79	Secondary area of contact.					extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Lung NSC(19;0.0676)|all_lung(19;0.148)					AATTCACCCCCCCAACGGTCT	0.567													60	211					0	0	0.014410	0	0
FRG1B	284802	broad.mit.edu	37	20	29625892	29625892	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:29625892T>C	uc010ztl.1	+	2	78	c.46T>C	c.(46-48)TAT>CAT	p.Y16H	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GAAATCTGGCTATGGAAAATA	0.348													3	80					0	0	0.004672	0	0
NCOA6	23054	broad.mit.edu	37	20	33329993	33329993	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:33329993A>G	uc002xav.2	-	12	6638	c.4067T>C	c.(4066-4068)CTG>CCG	p.L1356P	NCOA6_uc002xaw.2_Missense_Mutation_p.L1356P	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1356					brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						CTGAGAGGCCAGAGTAAGTTT	0.537													56	50					0	0	0.014410	0	0
FAM83C	128876	broad.mit.edu	37	20	33875226	33875226	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:33875226G>A	uc010zux.1	-	4	1474	c.1356C>T	c.(1354-1356)CTC>CTT	p.L452L	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Silent_p.L107L	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	452										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GGAACTGGAGGAGGGGCCGGG	0.642													20	24					0	0	0.012319	0	0
PTPRT	11122	broad.mit.edu	37	20	40710567	40710567	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:40710567G>A	uc002xkg.2	-	30	4411	c.4227C>T	c.(4225-4227)ATC>ATT	p.I1409I	PTPRT_uc010ggj.2_Silent_p.I1428I|PTPRT_uc010ggi.2_Silent_p.I612I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1409	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTGTTTTCACGATGTGGAACA	0.502													31	82					0	0	0.013726	0	0
WFDC6	140870	broad.mit.edu	37	20	44168034	44168034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:44168034C>T	uc002xos.1	-	1	101	c.13G>A	c.(13-15)GGA>AGA	p.G5R	SPINLW1_uc010zxc.1_Intron	NM_080827	NP_543017	Q9BQY6	WFDC6_HUMAN	WAP four-disulfide core domain 6 precursor	5						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GGCAGAAGTCCTGAGAGTCCC	0.532													52	51					0	0	0.014410	0	0
ZNFX1	57169	broad.mit.edu	37	20	47881295	47881295	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:47881295G>A	uc002xui.2	-	5	2356	c.2109C>T	c.(2107-2109)TTC>TTT	p.F703F		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	703							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GGTTGCGGCGGAATTCCCGCT	0.522													44	127					0	0	0.010771	0	0
KCNB1	3745	broad.mit.edu	37	20	47990100	47990100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:47990100G>A	uc002xur.1	-	2	2161	c.1997C>T	c.(1996-1998)CCT>CTT	p.P666L	KCNB1_uc002xus.1_Missense_Mutation_p.P666L	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	666	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GAGCTTCAAAGGGTTGTTAGT	0.547													23	81					0	0	0.018920	0	0
ATP9A	10079	broad.mit.edu	37	20	50287714	50287714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:50287714G>A	uc002xwg.1	-	12	1120	c.1120C>T	c.(1120-1122)CGC>TGC	p.R374C	ATP9A_uc010gih.1_Missense_Mutation_p.R238C|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	374	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						GTGCTGGAGCGAACCACGGTC	0.552													22	45					0	0	0.014323	0	0
ZNF831	128611	broad.mit.edu	37	20	57768949	57768949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr20:57768949G>A	uc002yan.2	+	1	2875	c.2875G>A	c.(2875-2877)GGA>AGA	p.G959R		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	959						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CATTCCCTGGGGACCAAGGCA	0.592													24	93					0	0	0.006320	0	0
C21orf99	149992	broad.mit.edu	37	21	14414855	14414855	+	RNA	SNP	A	G	G	rs141732548	by1000genomes	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr21:14414855A>G	uc002yiy.3	+	2		c.292A>G			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						GCCAATGGCCATGCAGAAGTA	0.448													7	62					0	0	0.004482	0	0
BACH1	571	broad.mit.edu	37	21	30693751	30693751	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr21:30693751C>T	uc002ynj.2	+	2	265	c.150C>T	c.(148-150)TCC>TCT	p.S50S	BACH1_uc002ynk.2_Silent_p.S50S|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	50	BTB.					nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						CTCACCGGTCCGTGCTGGCGG	0.527													19	60					0	0	0.010504	0	0
TIAM1	7074	broad.mit.edu	37	21	32496914	32496914	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr21:32496914G>T	uc002yow.1	-	28	4704	c.4232C>A	c.(4231-4233)TCC>TAC	p.S1411Y	TIAM1_uc011adk.1_Missense_Mutation_p.S1411Y|TIAM1_uc011adl.1_Missense_Mutation_p.S1351Y	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1411					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ATATTGCTGGGATGAGGGAAG	0.542													14	44					4.3838e-07	4.76014e-07	0.016723	1	0
C21orf59	56683	broad.mit.edu	37	21	33982302	33982302	+	Silent	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr21:33982302T>C	uc002yqc.2	-	2	266	c.153A>G	c.(151-153)TTA>TTG	p.L51L	C21orf59_uc002ypx.1_5'Flank|C21orf59_uc002ypy.1_Silent_p.L51L|C21orf59_uc002ypz.1_Silent_p.L51L|C21orf59_uc010glx.2_5'UTR|C21orf59_uc002yqd.2_Silent_p.L51L|C21orf59_uc002yqb.3_Silent_p.L51L|C21orf59_uc011adr.1_Intron	NM_021254	NP_067077	P57076	CU059_HUMAN	hypothetical protein LOC56683	51						cytosol|nucleus					0						CATGTTCGGCTAATTCTTCCA	0.289													15	26					0	0	0.004007	0	0
IL10RB	3588	broad.mit.edu	37	21	34668534	34668535	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr21:34668534_34668535CC>TT	uc002yrk.1	+	7	949_950	c.850_851CC>TT	c.(850-852)CCA>TTA	p.P284L	IL10RB_uc002yrl.1_Missense_Mutation_p.P286L	NM_000628	NP_000619	Q08334	I10R2_HUMAN	interleukin 10 receptor, beta precursor	284	Cytoplasmic (Potential).			Missing (in Ref. 2; AAA86872).	immune response|inflammatory response	interleukin-28 receptor complex	protein binding|receptor activity				0						TTTCTCCTTTCCATTGTCGGAT	0.45													32	118					0	0	0.004672	0	0
DOPEY2	9980	broad.mit.edu	37	21	37571508	37571508	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr21:37571508C>T	uc002yvg.2	+	3	358	c.279C>T	c.(277-279)ATC>ATT	p.I93I	DOPEY2_uc011aeb.1_Silent_p.I93I	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	93					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						TCTTTAAAATCGTGGGGACCA	0.473													22	66					0	0	0.016522	0	0
DSCAM	1826	broad.mit.edu	37	21	41414576	41414576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr21:41414576G>A	uc002yyq.1	-	32	5860	c.5408C>T	c.(5407-5409)TCC>TTC	p.S1803F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1803	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ACTTTCTGTGGAGACCATGCT	0.542													18	46					0	0	0.004990	0	0
DSCAM	1826	broad.mit.edu	37	21	41447132	41447132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr21:41447132G>A	uc002yyq.1	-	27	5172	c.4720C>T	c.(4720-4722)CCT>TCT	p.P1574S	DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1574	Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATGAGTGGAGGAATTGTACCT	0.502													11	27					0	0	0.013537	0	0
ICOSLG	23308	broad.mit.edu	37	21	45656889	45656889	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr21:45656889G>A	uc002zee.2	-	3	401	c.267C>T	c.(265-267)GCC>GCT	p.A89A	ICOSLG_uc011afc.1_5'UTR|ICOSLG_uc002zef.2_Intron|ICOSLG_uc010gpp.1_Silent_p.A89A	NM_015259	NP_056074	O75144	ICOSL_HUMAN	inducible T-cell co-stimulator ligand precursor	89	Ig-like V-type.|Extracellular (Potential).				B cell activation|defense response|hyperosmotic response|positive regulation of activated T cell proliferation|signal transduction|T cell activation|T cell costimulation		receptor binding				0				Colorectal(79;0.0163)|READ - Rectum adenocarcinoma(84;0.0772)		GCAGCATGCCGGCCGGTGACA	0.602													21	55					0	0	0.016522	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072195	17072195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:17072195C>T	uc002zlp.1	-	1	1506	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	416					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AAAGCCATTTCTGTGGCCCCA	0.542													20	33					0	0	0.010504	0	0
MICAL3	57553	broad.mit.edu	37	22	18354649	18354649	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:18354649G>A	uc002zng.3	-	17	2735	c.2382C>T	c.(2380-2382)TGC>TGT	p.C794C	MICAL3_uc011agl.1_Silent_p.C794C|MICAL3_uc002znh.2_Silent_p.C794C|MICAL3_uc002znj.1_Silent_p.C522C|MICAL3_uc002znk.1_Silent_p.C794C|MICAL3_uc002znl.1_Silent_p.C427C|MICAL3_uc002znm.2_Silent_p.C295C|MICAL3_uc010grf.2_Silent_p.C918C	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	794	LIM zinc-binding.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GGGTGGTGGCGCAGTACTCGC	0.607													4	9					0	0	0.001168	0	0
CLTCL1	8218	broad.mit.edu	37	22	19184075	19184075	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:19184075G>A	uc002zpb.2	-	26	4041	c.3966C>T	c.(3964-3966)ATC>ATT	p.I1322I	CLTCL1_uc011agv.1_Silent_p.I1322I|CLTCL1_uc011agw.1_Silent_p.I1301I|CLTCL1_uc011agt.1_Silent_p.I113I|CLTCL1_uc011agu.1_Silent_p.I113I|CLTCL1_uc010grm.1_Silent_p.I82I|CLTCL1_uc002zpe.2_3'UTR|CLTCL1_uc002zpd.1_Silent_p.I229I	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1322	Involved in binding clathrin light chain (By similarity).|Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					TGGAGTAGAGGATGGCCAGCT	0.557			T	?	ALCL								8	14					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	22	20977008	20977008	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:20977008G>A	uc002zsv.2	-	5		c.1527C>T								Homo sapiens, clone IMAGE:5171202, mRNA.																		TCCCAGGGTCGAGAAATTCCA	0.502													6	18					0	0	0.001984	0	0
LOC96610	96610	broad.mit.edu	37	22	23077342	23077342	+	RNA	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:23077342C>T	uc011aim.1	+	187		c.10033C>T								Parts of antibodies, mostly variable regions.												0						GTCACCATCTCCTGCACTGGA	0.542													75	219					0	0	0.014410	0	0
TMEM211	255349	broad.mit.edu	37	22	25331525	25331525	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:25331525G>A	uc003abk.1	-	3	190	c.165C>T	c.(163-165)ATC>ATT	p.I55I		NM_001001663	NP_001001663	Q6ICI0	TM211_HUMAN	transmembrane protein 211	126	Helical; (Potential).					integral to membrane					0						AGGCAAGGCCGATTGGGAAAA	0.517													18	44					0	0	0.006122	0	0
ADRBK2	157	broad.mit.edu	37	22	26107084	26107084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:26107084C>T	uc003abx.3	+	17	1592	c.1445C>T	c.(1444-1446)GCC>GTC	p.A482V	ADRBK2_uc003abw.2_Missense_Mutation_p.A369V|ADRBK2_uc003aby.3_RNA	NM_005160	NP_005151	P35626	ARBK2_HUMAN	beta-adrenergic receptor kinase 2	482	AGC-kinase C-terminal.						ATP binding|beta-adrenergic receptor kinase activity|signal transducer activity			lung(3)|ovary(2)|stomach(1)|central_nervous_system(1)	7					Adenosine triphosphate(DB00171)	GCTGCTGATGCCTTTGATATT	0.413													14	37					0	0	0.004990	0	0
MYO18B	84700	broad.mit.edu	37	22	26242175	26242175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:26242175G>A	uc003abz.1	+	19	3727	c.3477G>A	c.(3475-3477)ATG>ATA	p.M1159I	MYO18B_uc003aca.1_Missense_Mutation_p.M1040I|MYO18B_uc010guy.1_Missense_Mutation_p.M1041I|MYO18B_uc010guz.1_Missense_Mutation_p.M1040I|MYO18B_uc011aka.1_Missense_Mutation_p.M313I|MYO18B_uc011akb.1_Missense_Mutation_p.M672I	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1159	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGAGCCGCATGGTGAGGAGGA	0.662													13	31					0	0	0.004007	0	0
MYO18B	84700	broad.mit.edu	37	22	26423626	26423626	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:26423626G>A	uc003abz.1	+	43	7936	c.7686G>A	c.(7684-7686)AAG>AAA	p.K2562K	MYO18B_uc003aca.1_Silent_p.K2443K|MYO18B_uc010guy.1_Silent_p.K2444K|MYO18B_uc010guz.1_Silent_p.K2442K|MYO18B_uc011aka.1_Silent_p.K1716K|MYO18B_uc011akb.1_Silent_p.K2075K|MYO18B_uc010gva.1_Silent_p.K545K|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2562						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCATAATGAAGAAATACCTCC	0.567													7	18					0	0	0.003080	0	0
DEPDC5	9681	broad.mit.edu	37	22	32217490	32217490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:32217490C>T	uc003als.2	+	23	2015	c.1873C>T	c.(1873-1875)CCA>TCA	p.P625S	DEPDC5_uc011als.1_Intron|DEPDC5_uc011alu.1_Missense_Mutation_p.P625S|DEPDC5_uc011alv.1_Intron|DEPDC5_uc003alt.2_Missense_Mutation_p.P625S|DEPDC5_uc003alu.2_Missense_Mutation_p.P65S|DEPDC5_uc003alv.2_Intron|DEPDC5_uc011alw.1_5'Flank|DEPDC5_uc011alt.1_Intron	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	625					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CTGGGTAGGGCCATCCGGAGA	0.532													42	103					0	0	0.010771	0	0
C22orf42	150297	broad.mit.edu	37	22	32554976	32554976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:32554976G>A	uc003amd.2	-	1	268	c.227C>T	c.(226-228)TCC>TTC	p.S76F		NM_001010859	NP_001010859	Q6IC83	CV042_HUMAN	chromosome 22 open reading frame 42	76										ovary(1)|skin(1)	2						TTTACCTTTGGACATCTTCAG	0.547													43	131					0	0	0.013114	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120372	38120372	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:38120372C>T	uc003atr.2	+	7	2080	c.1809C>T	c.(1807-1809)GCC>GCT	p.A603A	TRIOBP_uc003atu.2_Silent_p.A431A|TRIOBP_uc003atq.1_Silent_p.A603A|TRIOBP_uc003ats.1_Silent_p.A431A	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	603					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CATCCTGTGCCCAGCGGGACA	0.587													14	226					0	0	0.003163	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120944	38120944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:38120944C>T	uc003atr.2	+	7	2652	c.2381C>T	c.(2380-2382)TCC>TTC	p.S794F	TRIOBP_uc003atu.2_Missense_Mutation_p.S622F|TRIOBP_uc003atq.1_Missense_Mutation_p.S794F|TRIOBP_uc003ats.1_Missense_Mutation_p.S622F	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	794					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCCAGAACATCCTGTGCCCAG	0.532													28	77					0	0	0.008361	0	0
PDGFB	5155	broad.mit.edu	37	22	39627771	39627771	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:39627771G>A	uc003axf.2	-	4	1301	c.312C>T	c.(310-312)TTC>TTT	p.F104F	PDGFB_uc003axe.2_Silent_p.F89F	NM_002608	NP_002599	P01127	PDGFB_HUMAN	platelet-derived growth factor beta isoform 1	104					activation of protein kinase B activity|cellular response to mycophenolic acid|embryonic placenta development|heart development|hemopoiesis|metanephric glomerular mesangial cell development|monocyte chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|negative regulation of transcription, DNA-dependent|paracrine signaling|peptidyl-serine phosphorylation|peptidyl-tyrosine phosphorylation|platelet activation|platelet degranulation|positive regulation of blood vessel endothelial cell migration|positive regulation of calcium ion import|positive regulation of cell division|positive regulation of chemotaxis|positive regulation of cyclin-dependent protein kinase activity|positive regulation of DNA biosynthetic process|positive regulation of DNA replication|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of glomerular filtration|positive regulation of glomerular mesangial cell proliferation|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent|reactive oxygen species metabolic process|transforming growth factor beta receptor signaling pathway	basolateral plasma membrane|cell surface|endoplasmic reticulum lumen|extracellular region|Golgi membrane|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|superoxide-generating NADPH oxidase activator activity		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(1)	373	Melanoma(58;0.04)				Becaplermin(DB00102)	GGGAGATCTCGAACACCTCGG	0.647			T	COL1A1	DFSP								3	15					0	0	0.009096	0	0
FAM83F	113828	broad.mit.edu	37	22	40417711	40417711	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:40417711G>A	uc003ayk.1	+	4	1291	c.1197G>A	c.(1195-1197)AAG>AAA	p.K399K		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	399										breast(1)	1						TGAGCCAGAAGGATGGCAGGA	0.652													7	22					0	0	0.001984	0	0
MKL1	57591	broad.mit.edu	37	22	40819553	40819553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:40819553G>A	uc003ayv.1	-	6	821	c.614C>T	c.(613-615)CCC>CTC	p.P205L	MKL1_uc003ayw.1_Missense_Mutation_p.P205L|MKL1_uc010gye.1_Missense_Mutation_p.P205L|MKL1_uc010gyf.1_Intron	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	205	Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						AATGAGTGTGGGGGTGGACTT	0.572			T	RBM15	acute megakaryocytic leukemia								15	39					0	0	0.003163	0	0
ACO2	50	broad.mit.edu	37	22	41895859	41895859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:41895859C>T	uc003bac.2	+	2	188	c.166C>T	c.(166-168)CGC>TGC	p.R56C	ACO2_uc003bad.2_Missense_Mutation_p.R56C	NM_001098	NP_001089	Q99798	ACON_HUMAN	aconitase 2, mitochondrial precursor	56					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(2)|ovary(1)|lung(1)	4						TAACATTGTTCGCAAACGGTA	0.542													65	130					0	0	0.014410	0	0
SREBF2	6721	broad.mit.edu	37	22	42269900	42269900	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:42269900G>T	uc003bbi.2	+	5	1135	c.966G>T	c.(964-966)CAG>CAT	p.Q322H	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|SREBF2_uc003bbj.2_RNA	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	322	Interaction with LMNA (By similarity).|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						GAGTCAAGCAGCTTGAGCCCC	0.498													18	23					3.52763e-06	3.82603e-06	0.004990	1	0
NCRNA00207	388910	broad.mit.edu	37	22	44966445	44966445	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:44966445G>A	uc003bev.1	+	2	169	c.102G>A	c.(100-102)AGG>AGA	p.R34R	NCRNA00207_uc011aqg.1_RNA|NCRNA00207_uc011aqh.1_RNA	NM_001012986	NP_001013004			SubName: Full=Novel gene;												0						TGAACCAGAGGGGAACACCGT	0.502													4	27					0	0	0.009096	0	0
PPARA	5465	broad.mit.edu	37	22	46614265	46614265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:46614265C>T	uc003bgw.1	+	6	741	c.475C>T	c.(475-477)CAC>TAC	p.H159Y	PPARA_uc003bgx.1_Missense_Mutation_p.H159Y|PPARA_uc010hab.1_Missense_Mutation_p.H159Y|PPARA_uc003bha.2_Missense_Mutation_p.H159Y|PPARA_uc003bhb.1_Missense_Mutation_p.H159Y|PPARA_uc010hac.1_Silent_p.F23F	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	159	Nuclear receptor.|NR C4-type.				fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	TTGTCGATTTCACAAGTGCCT	0.498													60	109					0	0	0.014410	0	0
MOV10L1	54456	broad.mit.edu	37	22	50572967	50572967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:50572967C>T	uc003bjj.2	+	15	2061	c.1978C>T	c.(1978-1980)CCA>TCA	p.P660S	MOV10L1_uc003bjk.3_Missense_Mutation_p.P660S|MOV10L1_uc011arp.1_Missense_Mutation_p.P640S|MOV10L1_uc011arq.1_Missense_Mutation_p.P421S|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	660					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		AGTGTTGTTTCCAGAAGAAAT	0.368													26	69					0	0	0.004656	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50664527	50664527	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:50664527T>C	uc003bkb.1	-	9	2297	c.1785A>G	c.(1783-1785)ATA>ATG	p.I595M	TUBGCP6_uc010har.1_Missense_Mutation_p.I595M|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_5'Flank|TUBGCP6_uc003bkd.1_Translation_Start_Site	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	595					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CGCAGACGTATATGTCGTGGG	0.557													52	149					0	0	0.014410	0	0
ARSA	410	broad.mit.edu	37	22	51065360	51065360	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr22:51065360G>A	uc003bnb.3	-	4	833	c.580C>T	c.(580-582)CTG>TTG	p.L194L	ARSA_uc003bna.3_Silent_p.L110L|ARSA_uc003bnc.3_Silent_p.L194L|ARSA_uc003bnd.3_Silent_p.L194L|ARSA_uc003bmz.3_Silent_p.L194L|ARSA_uc010hbf.2_3'UTR	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	194						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	AGTCCGGGCAGCCAGGGGGGC	0.672													34	86					0	0	0.013726	0	0
LRRN1	57633	broad.mit.edu	37	3	3887668	3887668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:3887668G>A	uc003bpt.3	+	2	2104	c.1343G>A	c.(1342-1344)CGA>CAA	p.R448Q	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	448	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CTAGACTGTCGAGCCATGGCT	0.453													22	51					0	0	0.010504	0	0
FBLN2	2199	broad.mit.edu	37	3	13660447	13660447	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:13660447G>A	uc011avb.1	+	7	2108	c.1983G>A	c.(1981-1983)CTG>CTA	p.L661L	FBLN2_uc011auz.1_Silent_p.L687L|FBLN2_uc011ava.1_Silent_p.L661L|FBLN2_uc011avc.1_Silent_p.L661L	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	661						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			AGCCTGCACTGAAGTCAGAAT	0.602													8	18					0	0	0.008291	0	0
EOMES	8320	broad.mit.edu	37	3	27758863	27758863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:27758863C>T	uc003cdx.2	-	6	1759	c.1759G>A	c.(1759-1761)GCT>ACT	p.A587T	EOMES_uc003cdy.3_Missense_Mutation_p.A606T|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Missense_Mutation_p.A311T	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	587	Required for transcription activation (By similarity).				CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						GGTAGTCCAGCTGCCATCTTC	0.532													17	36					0	0	0.004990	0	0
OSBPL10	114884	broad.mit.edu	37	3	31725152	31725152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:31725152G>A	uc003cev.2	-	9	2081	c.1700C>T	c.(1699-1701)TCC>TTC	p.S567F	OSBPL10_uc003ceu.1_Missense_Mutation_p.S324F|OSBPL10_uc011axf.1_Missense_Mutation_p.S503F	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	567					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		GACCCCCACGGACATGCCCAT	0.478													37	101					0	0	0.007835	0	0
STAC	6769	broad.mit.edu	37	3	36526476	36526476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:36526476G>A	uc003cgh.1	+	4	536	c.497G>A	c.(496-498)GGG>GAG	p.G166E	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Intron	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	166					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						CAGCCAAAGGGGTTTCGGCGT	0.463													14	34					0	0	0.003163	0	0
SLC22A14	9389	broad.mit.edu	37	3	38355224	38355224	+	Silent	SNP	C	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:38355224C>A	uc010hhc.1	+	8	1212	c.1170C>A	c.(1168-1170)ACC>ACA	p.T390T	SLC22A14_uc003cib.2_Silent_p.T390T|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	390	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		CCAGGTTTACCGTCAGTTACA	0.577													29	62					1.13719e-10	1.24347e-10	0.008361	1	0
SCN5A	6331	broad.mit.edu	37	3	38601711	38601711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:38601711C>T	uc003cio.2	-	23	4366	c.4172G>A	c.(4171-4173)GGA>GAA	p.G1391E	SCN5A_uc003cin.2_Missense_Mutation_p.G1390E|SCN5A_uc003cil.3_Missense_Mutation_p.G1391E|SCN5A_uc010hhi.2_Missense_Mutation_p.G1391E|SCN5A_uc010hhk.2_Missense_Mutation_p.G1390E|SCN5A_uc011ayr.1_Missense_Mutation_p.G1337E|SCN5A_uc010hhj.1_Missense_Mutation_p.G1001E	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1391					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GTACAATTCTCCGGTCAAGTT	0.527													8	17					0	0	0.004482	0	0
SCN11A	11280	broad.mit.edu	37	3	38949448	38949448	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:38949448G>A	uc011ays.1	-	10	1664	c.1465C>T	c.(1465-1467)CAA>TAA	p.Q489*		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	489					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ACCTTTTTTTGGCAATCTTCA	0.368													22	49					0	0	0.018920	0	0
ZNF662	389114	broad.mit.edu	37	3	42956832	42956832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:42956832C>T	uc003cmi.2	+	5	1619	c.1267C>T	c.(1267-1269)CTT>TTT	p.L423F	ZNF662_uc003cmk.2_Missense_Mutation_p.L449F|ZNF662_uc003cmj.2_Missense_Mutation_p.L315F	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	423					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		GATCTCTCACCTTCTTGAACA	0.408													11	28					0	0	0.008291	0	0
COL7A1	1294	broad.mit.edu	37	3	48614163	48614163	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:48614163G>A	uc003ctz.2	-	67	5647	c.5646C>T	c.(5644-5646)ATC>ATT	p.I1882I		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1882	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGGTCCAAGGATACCAGGAG	0.602													3	17					0	0	0.009096	0	0
COL7A1	1294	broad.mit.edu	37	3	48621382	48621382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:48621382G>A	uc003ctz.2	-	38	4230	c.4229C>T	c.(4228-4230)CCC>CTC	p.P1410L		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1410	Triple-helical region.|Interrupted collagenous region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TGGTCCAGGGGGACCCTGGGA	0.647													21	31					0	0	0.012319	0	0
AMIGO3	386724	broad.mit.edu	37	3	49756665	49756665	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:49756665G>A	uc003cxj.2	-	1	574	c.234C>T	c.(232-234)CCC>CCT	p.P78P	RNF123_uc003cxh.2_Intron|RNF123_uc003cxi.2_Intron	NM_198722	NP_942015	Q86WK7	AMGO3_HUMAN	adhesion molecule with Ig-like domain 3	78	Extracellular (Potential).|LRR 1.				heterophilic cell-cell adhesion	integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CCAACCAGCCGGGGCGCAGGC	0.677											OREG0015572	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	60					0	0	0.007291	0	0
SLMAP	7871	broad.mit.edu	37	3	57882648	57882648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:57882648C>T	uc003dje.1	+	15	1644	c.1439C>T	c.(1438-1440)TCC>TTC	p.S480F	SLMAP_uc003djc.1_Missense_Mutation_p.S476F|SLMAP_uc003djd.1_Missense_Mutation_p.S463F|SLMAP_uc003djf.1_Missense_Mutation_p.S442F|SLMAP_uc003djg.1_Missense_Mutation_p.S74F|SLMAP_uc011bez.1_Missense_Mutation_p.S14F|SLMAP_uc011bfa.1_Missense_Mutation_p.S14F|SLMAP_uc003djh.2_Missense_Mutation_p.S14F|SLMAP_uc003dji.1_Missense_Mutation_p.S14F|SLMAP_uc011bfb.1_Missense_Mutation_p.S14F|SLMAP_uc011bfc.1_Missense_Mutation_p.S14F	NM_007159	NP_009090	Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	480	Cytoplasmic (Potential).|Potential.				muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		GCCAAAGTGTCCCTTTTAAAA	0.343													24	59					0	0	0.021523	0	0
FLNB	2317	broad.mit.edu	37	3	58139289	58139289	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:58139289G>A	uc003djj.2	+	39	6720	c.6555G>A	c.(6553-6555)GTG>GTA	p.V2185V	FLNB_uc010hne.2_Silent_p.V2216V|FLNB_uc003djk.2_Silent_p.V2174V|FLNB_uc010hnf.2_Silent_p.V2161V|FLNB_uc003djl.2_Silent_p.V2005V|FLNB_uc003djm.2_Silent_p.V1992V|FLNB_uc010hng.1_RNA	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2185	Filamin 20.|Interaction with FLNA 1.|Interaction with INPPL1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		AGTTCACCGTGGGGCCACTTG	0.662													28	28					0	0	0.005443	0	0
PXK	54899	broad.mit.edu	37	3	58395265	58395265	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:58395265C>T	uc003djz.1	+	15	1414	c.1315C>T	c.(1315-1317)CAG>TAG	p.Q439*	PXK_uc003djx.1_Nonsense_Mutation_p.Q439*|PXK_uc003djy.1_Nonsense_Mutation_p.Q422*|PXK_uc003dka.1_Nonsense_Mutation_p.Q439*|PXK_uc003dkb.1_Nonsense_Mutation_p.Q356*|PXK_uc003dkc.1_Nonsense_Mutation_p.Q422*|PXK_uc011bfe.1_Nonsense_Mutation_p.Q406*|PXK_uc010hnj.1_Nonsense_Mutation_p.Q406*|PXK_uc003dkd.1_Nonsense_Mutation_p.Q302*|PXK_uc010hnk.1_Nonsense_Mutation_p.Q213*	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	439	Protein kinase.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		AAAGATTCACCAGCATCGAAG	0.403													6	18					0	0	0.003080	0	0
GBE1	2632	broad.mit.edu	37	3	81810613	81810613	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:81810613T>A	uc003dqg.2	-	2	339	c.56A>T	c.(55-57)AAT>ATT	p.N19I		NM_000158	NP_000149	Q04446	GLGB_HUMAN	glucan (1,4-alpha-), branching enzyme 1	19					glucose metabolic process|glycogen biosynthetic process	cytosol	1,4-alpha-glucan branching enzyme activity|cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(3)	3		Lung NSC(201;0.0117)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0654)|Epithelial(33;0.00305)|LUSC - Lung squamous cell carcinoma(29;0.00646)|BRCA - Breast invasive adenocarcinoma(55;0.00813)|Lung(72;0.0129)|KIRC - Kidney renal clear cell carcinoma(39;0.212)|Kidney(39;0.247)		CAGGGCGGCATTGAGCGCCGC	0.672									Glycogen_Storage_Disease_type_IV				9	25					0	0	0.004482	0	0
IGSF11	152404	broad.mit.edu	37	3	118644973	118644973	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:118644973G>A	uc003ebw.2	-	4	802	c.555C>T	c.(553-555)CTC>CTT	p.L185L	IGSF11_uc011biv.1_Silent_p.L185L|IGSF11_uc003ebx.2_Silent_p.L185L|IGSF11_uc003eby.2_Silent_p.L184L|IGSF11_uc003ebz.2_Silent_p.L184L|IGSF11_uc010hqs.2_Silent_p.L184L	NM_001015887	NP_001015887	Q5DX21	IGS11_HUMAN	immunoglobulin superfamily, member 11 isoform b	185	Ig-like C2-type.|Extracellular (Potential).				cell adhesion|regulation of growth	integral to membrane|plasma membrane	receptor activity				0						GAGGTAGTTTGAGGGTATTGT	0.408													15	38					0	0	0.004990	0	0
POLQ	10721	broad.mit.edu	37	3	121264614	121264614	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:121264614G>A	uc003eee.3	-	1	240	c.111C>T	c.(109-111)TCC>TCT	p.S37S		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	37					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		GGCTCAGCACGGACCCGGAGA	0.706								DNA_polymerases_(catalytic_subunits)					5	14					0	0	0.014758	0	0
CASR	846	broad.mit.edu	37	3	121980939	121980939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:121980939G>A	uc003eev.3	+	4	1429	c.1057G>A	c.(1057-1059)GAA>AAA	p.E353K	CASR_uc003eew.3_Missense_Mutation_p.E353K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	353	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GGAGTTTTGGGAAGAAACATT	0.498													14	38					0	0	0.016723	0	0
MUC13	56667	broad.mit.edu	37	3	124641140	124641140	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:124641140G>A	uc003ehq.1	-	4	669	c.645C>T	c.(643-645)TTC>TTT	p.F215F		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	215	SEA.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						TCTTCCCAGGGAATACCTTTC	0.338													15	26					0	0	0.003163	0	0
ZNF148	7707	broad.mit.edu	37	3	124952531	124952531	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:124952531G>T	uc003ehx.3	-	9	1525	c.1039C>A	c.(1039-1041)CCT>ACT	p.P347T	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.P347T|ZNF148_uc010hsa.2_Missense_Mutation_p.P347T|ZNF148_uc003eia.3_Missense_Mutation_p.P347T|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	347					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						GAATAAAGAGGCAAGTAATCA	0.363													14	40					1.05317e-09	1.15025e-09	0.020292	1	0
ALDH1L1	10840	broad.mit.edu	37	3	125856726	125856726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:125856726C>T	uc003eim.1	-	10	1344	c.1154G>A	c.(1153-1155)GGG>GAG	p.G385E	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.G284E|ALDH1L1_uc003eio.2_Missense_Mutation_p.G87E|ALDH1L1_uc010hsf.1_Missense_Mutation_p.G411E	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	385	Acyl carrier.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	GATGAAGTCCCCAAAGGTGGA	0.557													22	48					0	0	0.012319	0	0
TMEM108	66000	broad.mit.edu	37	3	133098997	133098997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:133098997G>A	uc003eph.2	+	4	716	c.442G>A	c.(442-444)GGG>AGG	p.G148R	TMEM108_uc003epi.2_Missense_Mutation_p.G148R|TMEM108_uc003epj.1_Missense_Mutation_p.G148R|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Missense_Mutation_p.G99R	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	148	Pro-rich.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						AAAGCCACCGGGGGCCACCAG	0.701													9	16					0	0	0.006214	0	0
PRR23B	389151	broad.mit.edu	37	3	138738775	138738775	+	Silent	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:138738775A>T	uc003esy.1	-	1	994	c.729T>A	c.(727-729)GGT>GGA	p.G243G		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	243	Pro-rich.									breast(1)	1						GCGCGTGGGGACCTGGACTCC	0.657													12	27					0	0	0.020292	0	0
PRR23B	389151	broad.mit.edu	37	3	138739084	138739084	+	Silent	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:138739084T>C	uc003esy.1	-	1	685	c.420A>G	c.(418-420)GAA>GAG	p.E140E		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	140										breast(1)	1						ATGCGCAGAATTCCAGCTCGA	0.662													14	43					0	0	0.020292	0	0
IGSF10	285313	broad.mit.edu	37	3	151164524	151164524	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:151164524G>C	uc011bod.1	-	4	3245	c.3245C>G	c.(3244-3246)CCA>CGA	p.P1082R		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1082					cell differentiation|multicellular organismal development|ossification	extracellular region		p.P1082R(1)		skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGCAGCACTTGGAAAAGACAA	0.488													35	77					0	0	0.017118	0	0
IGSF10	285313	broad.mit.edu	37	3	151166599	151166599	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:151166599C>T	uc011bod.1	-	4	1170	c.1170G>A	c.(1168-1170)AGG>AGA	p.R390R		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	390					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCAAGTGGCTCCTTTCTAGTA	0.413													11	24					0	0	0.008291	0	0
DHX36	170506	broad.mit.edu	37	3	154042118	154042118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:154042118G>A	uc003ezy.3	-	1	169	c.88C>T	c.(88-90)CAT>TAT	p.H30Y	DHX36_uc010hvq.2_Missense_Mutation_p.H30Y|DHX36_uc003ezz.3_Missense_Mutation_p.H30Y	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	30	Gly-rich.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TTACCTCCATGACCCCCTGCT	0.697													10	17					0	0	0.008291	0	0
MFSD1	64747	broad.mit.edu	37	3	158539803	158539803	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:158539803C>T	uc003fcl.1	+	11	981	c.951C>T	c.(949-951)TCC>TCT	p.S317S	MFSD1_uc003fcm.1_RNA|MFSD1_uc003fcn.1_Silent_p.S220S|MFSD1_uc011bow.1_Silent_p.S278S|MFSD1_uc011box.1_Silent_p.S244S	NM_022736	NP_073573	Q9H3U5	MFSD1_HUMAN	major facilitator superfamily domain containing	317	Helical; (Potential).				transmembrane transport	integral to membrane					0			Lung(72;0.00372)|LUSC - Lung squamous cell carcinoma(72;0.00523)			CTCCCATGTCCCCGGTGTTTG	0.458													23	41					0	0	0.021523	0	0
IQCJ	654502	broad.mit.edu	37	3	158983100	158983100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:158983100C>T	uc003fcp.1	+	5	493	c.388C>T	c.(388-390)CTC>TTC	p.L130F	SCHIP1_uc003fcq.1_Intron|SCHIP1_uc003fcr.1_Intron|IQCJ_uc010hvy.1_Missense_Mutation_p.L103F	NM_001042705	NP_001036170	Q1A5X6	IQCJ_HUMAN	IQ motif containing J isoform CaMBPv1	130											0			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			GGTGATTCTTCTCTACCTTGA	0.512													29	84					0	0	0.008361	0	0
SPATA16	83893	broad.mit.edu	37	3	172694842	172694842	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:172694842C>T	uc003fin.3	-	5	1007	c.849G>A	c.(847-849)CGG>CGA	p.R283R		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	283			R -> Q (in SPGF6).		cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TCATGGCACTCCTAAGAACAA	0.378													24	57					0	0	0.021523	0	0
ALG3	10195	broad.mit.edu	37	3	183962422	183962422	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:183962422G>A	uc003fne.2	-	5	724	c.693C>T	c.(691-693)GCC>GCT	p.A231A	ALG3_uc011brc.1_Silent_p.A196A|ALG3_uc011brd.1_Silent_p.A175A|ALG3_uc011bre.1_Silent_p.A183A|ALG3_uc003fnf.1_Silent_p.A191A	NM_005787	NP_005778	Q92685	ALG3_HUMAN	alpha-1,3-mannosyltransferase ALG3 isoform a	231	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	alpha-1,3-mannosyltransferase activity				0	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCTTGGGGAGGGCCCCACGGA	0.552													5	14					0	0	0.001168	0	0
FGF12	2257	broad.mit.edu	37	3	191888297	191888297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:191888297C>T	uc003fsx.2	-	4	1389	c.563G>A	c.(562-564)AGA>AAA	p.R188K	FGF12_uc003fsy.2_Missense_Mutation_p.R126K	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	188					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		TTTCTTCACTCTGTTCCCCTT	0.428													39	108					0	0	0.005524	0	0
ATP13A4	84239	broad.mit.edu	37	3	193232524	193232524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr3:193232524G>A	uc003ftd.2	-	2	305	c.197C>T	c.(196-198)TCC>TTC	p.S66F	ATP13A4_uc003fte.1_Missense_Mutation_p.S66F|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	66	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TTCTTGCAAGGAACATGGGAC	0.512													36	105					0	0	0.005524	0	0
ADD1	118	broad.mit.edu	37	4	2896428	2896428	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:2896428C>T	uc003gfr.2	+	6	899	c.711C>T	c.(709-711)GTC>GTT	p.V237V	ADD1_uc003gfn.2_Intron|ADD1_uc010ico.1_Silent_p.V237V|ADD1_uc003gfo.2_Silent_p.V237V|ADD1_uc003gfp.2_Silent_p.V237V|ADD1_uc003gfq.2_Silent_p.V237V|ADD1_uc003gfs.2_Silent_p.V237V|ADD1_uc003gft.3_Silent_p.V237V|ADD1_uc003gfu.2_5'UTR	NM_001119	NP_001110	P35611	ADDA_HUMAN	adducin 1 (alpha) isoform a	237					actin filament bundle assembly|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|positive regulation of protein binding	cytosol|F-actin capping protein complex|nucleus|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding|transcription factor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TGAAGTGCGTCGTGCACATTC	0.547													7	24					0	0	0.001984	0	0
GRK4	2868	broad.mit.edu	37	4	3031062	3031062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:3031062G>A	uc003ggn.1	+	12	1650	c.1195G>A	c.(1195-1197)GAT>AAT	p.D399N	GRK4_uc003ggo.1_Missense_Mutation_p.D399N|GRK4_uc003ggp.1_Missense_Mutation_p.D367N|GRK4_uc003ggq.1_Missense_Mutation_p.D367N	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	399	Protein kinase.					cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GGAGGAGGTCGATCAAAGAAT	0.438													14	30					0	0	0.003163	0	0
PGM2	55276	broad.mit.edu	37	4	37836258	37836258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:37836258G>A	uc011byb.1	+	3	341	c.268G>A	c.(268-270)GAA>AAA	p.E90K	PGM2_uc011bya.1_5'UTR|PGM2_uc011byc.1_Intron	NM_018290	NP_060760	Q96G03	PGM2_HUMAN	phosphoglucomutase 2	90					glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity|phosphopentomutase activity			ovary(1)	1						CAGATACCTGGAAAAACAATT	0.343													33	84					0	0	0.017118	0	0
PDS5A	23244	broad.mit.edu	37	4	39851153	39851153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:39851153G>A	uc003guv.3	-	27	3746	c.3206C>T	c.(3205-3207)TCC>TTC	p.S1069F	PDS5A_uc010ifo.2_Missense_Mutation_p.S1029F	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	1069					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						ATTTGTCTTGGATTCATCTGG	0.353													20	74					0	0	0.012319	0	0
NSUN7	79730	broad.mit.edu	37	4	40778268	40778268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:40778268G>A	uc003gvj.3	+	7	1523	c.1028G>A	c.(1027-1029)GGA>GAA	p.G343E	NSUN7_uc003gvi.3_Missense_Mutation_p.G343E	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						ACAAAAATAGGATGTAAAAGT	0.264													14	38					0	0	0.004990	0	0
ATP10D	57205	broad.mit.edu	37	4	47561023	47561023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:47561023C>T	uc003gxk.1	+	13	2682	c.2518C>T	c.(2518-2520)CGT>TGT	p.R840C	ATP10D_uc003gxl.1_Missense_Mutation_p.R88C	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	840	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						ACAAGGCCTTCGTACTTTATG	0.418													23	58					0	0	0.014323	0	0
NFXL1	152518	broad.mit.edu	37	4	47907343	47907343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:47907343C>T	uc010igh.2	-	4	604	c.427G>A	c.(427-429)GAG>AAG	p.E143K	NFXL1_uc003gxp.2_Missense_Mutation_p.E143K|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.E143K	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	143						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TTTGTTCGCTCTAATTCACGT	0.348													20	56					0	0	0.008871	0	0
KDR	3791	broad.mit.edu	37	4	55968659	55968659	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:55968659C>T	uc003has.2	-	14	2306	c.2004G>A	c.(2002-2004)ACG>ACA	p.T668T	KDR_uc003hat.1_Silent_p.T668T	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	668	Ig-like C2-type 7.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TTCCTGTGATCGTGGGTGCCA	0.428			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			10	37					0	0	0.013537	0	0
UGT2A3	79799	broad.mit.edu	37	4	69795706	69795706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:69795706C>T	uc003hef.2	-	6	1440	c.1409G>A	c.(1408-1410)GGA>GAA	p.G470E	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	470	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GTGCTTGGCTCCTTTGTGGCG	0.488													26	80					0	0	0.006320	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962911	69962911	+	Missense_Mutation	SNP	G	A	A	rs146308452	byFrequency	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:69962911G>A	uc003heg.3	+	1	719	c.673G>A	c.(673-675)GAA>AAA	p.E225K	UGT2B7_uc010ihq.2_Missense_Mutation_p.E225K	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	225					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CTTTTGGTTCGAAATATTTGA	0.318													23	45					0	0	0.012319	0	0
UGT2B4	7363	broad.mit.edu	37	4	70360938	70360938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:70360938C>T	uc003hek.3	-	1	689	c.642G>A	c.(640-642)ATG>ATA	p.M214I	UGT2B4_uc011cap.1_Missense_Mutation_p.M78I|UGT2B4_uc003hel.3_Missense_Mutation_p.M214I	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	214					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						GCACATAGATCATATTTTTTA	0.358													14	34					0	0	0.016723	0	0
C4orf35	85438	broad.mit.edu	37	4	71201408	71201408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:71201408C>T	uc003hff.2	+	1	738	c.652C>T	c.(652-654)CCT>TCT	p.P218S		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	218						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				GGCTGAAATCCCTCCTGCTCC	0.423													10	37					0	0	0.006214	0	0
PROL1	58503	broad.mit.edu	37	4	71275451	71275451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:71275451C>T	uc003hfi.2	+	3	580	c.406C>T	c.(406-408)CCT>TCT	p.P136S		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	136	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				TATTTACCTTCCTATCTCTAA	0.438													30	65					0	0	0.008361	0	0
ENAM	10117	broad.mit.edu	37	4	71508384	71508384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:71508384G>A	uc011caw.1	+	9	1522	c.1241G>A	c.(1240-1242)GGA>GAA	p.G414E		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	414					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CACCCTGTAGGAACTACTGTT	0.458													33	58					0	0	0.010818	0	0
CCDC158	339965	broad.mit.edu	37	4	77324342	77324342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:77324342C>T	uc003hkb.3	-	2	172	c.19G>A	c.(19-21)GAA>AAA	p.E7K	CCDC158_uc003hkd.2_Missense_Mutation_p.E7K	NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	7										skin(3)|ovary(2)|pancreas(1)	6						TTATTTGATTCCCAAGCTTTT	0.323													12	30					0	0	0.003163	0	0
ANXA3	306	broad.mit.edu	37	4	79507487	79507487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:79507487C>T	uc003hld.2	+	6	696	c.386C>T	c.(385-387)TCT>TTT	p.S129F	ANXA3_uc003hle.2_Missense_Mutation_p.S90F|ANXA3_uc010ijk.2_Missense_Mutation_p.S90F	NM_005139	NP_005130	P12429	ANXA3_HUMAN	annexin A3	129	Annexin 2.				defense response to bacterium|neutrophil degranulation|phagocytosis|positive regulation of angiogenesis|positive regulation of endothelial cell migration|positive regulation of sequence-specific DNA binding transcription factor activity	phagocytic vesicle membrane|plasma membrane|specific granule	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity				0						AAGGATATCTCTCAAGCCTAT	0.383													12	38					0	0	0.016723	0	0
PAQR3	152559	broad.mit.edu	37	4	79851443	79851443	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:79851443A>T	uc003hlp.1	-	3	589	c.385T>A	c.(385-387)TCC>ACC	p.S129T	PAQR3_uc003hlm.2_RNA|PAQR3_uc003hln.2_RNA|PAQR3_uc003hlq.1_Missense_Mutation_p.S11T	NM_001040202	NP_001035292	Q6TCH7	PAQR3_HUMAN	progestin and adipoQ receptor family member III	129	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	receptor activity				0						CGATGGCAGGAAAAAAGATGA	0.358													13	46					0	0	0.004990	0	0
RG9MTD2	93587	broad.mit.edu	37	4	100480449	100480449	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:100480449T>C	uc003huy.2	-	2	360	c.47A>G	c.(46-48)GAC>GGC	p.D16G	RG9MTD2_uc003huz.3_Missense_Mutation_p.D16G|RG9MTD2_uc003hva.3_Missense_Mutation_p.D16G	NM_152292	NP_689505	Q8TBZ6	RG9D2_HUMAN	RNA (guanine-9-) methyltransferase domain	16							methyltransferase activity			ovary(2)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.7e-08)		TTGCTTTTTGTCAACATTAGA	0.343													13	44					0	0	0.020292	0	0
DDIT4L	115265	broad.mit.edu	37	4	101109086	101109086	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:101109086C>T	uc003hvq.2	-	3	533	c.330G>A	c.(328-330)GTG>GTA	p.V110V		NM_145244	NP_660287	Q96D03	DDT4L_HUMAN	DNA-damage-inducible transcript 4-like	110					negative regulation of signal transduction	cytoplasm				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;5.75e-09)		TTTCCAAGTTCACGTGCATAA	0.463													14	38					0	0	0.016723	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156631965	156631965	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:156631965C>T	uc003iov.2	+	7	1184	c.648C>T	c.(646-648)CCC>CCT	p.P216P	GUCY1A3_uc003iou.2_Silent_p.P216P|GUCY1A3_uc010iqc.2_Silent_p.P216P|GUCY1A3_uc003iow.2_Silent_p.P216P|GUCY1A3_uc010iqd.2_Silent_p.P215P|GUCY1A3_uc003iox.2_Silent_p.P216P|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Silent_p.P216P|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Silent_p.P216P	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	216					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TGATTCTTCCCGGCATCATAA	0.463													22	48					0	0	0.021523	0	0
TLL1	7092	broad.mit.edu	37	4	166946521	166946521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:166946521C>T	uc003irh.1	+	9	1743	c.1096C>T	c.(1096-1098)CCC>TCC	p.P366S	TLL1_uc011cjn.1_Missense_Mutation_p.P366S|TLL1_uc011cjo.1_Missense_Mutation_p.P190S	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	366	CUB 1.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TCCAGGATTTCCCAATGGCTA	0.383													27	33					0	0	0.012213	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455134	187455134	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr4:187455134C>T	uc003izd.1	-	2	780	c.762G>A	c.(760-762)CTG>CTA	p.L254L		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	254	Helical; Name=6; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	CAATGAAGTTCAGAGGAGCCC	0.507													47	31					0	0	0.010771	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	171384	171384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:171384C>T	uc003jak.2	+	14	2857	c.2807C>T	c.(2806-2808)CCC>CTC	p.P936L		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	936	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CTGCTGCGGCCCGTGCAGCGT	0.687													4	16					0	0	0.001984	0	0
DNAH5	1767	broad.mit.edu	37	5	13766229	13766229	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:13766229G>A	uc003jfd.2	-	59	9999	c.9957C>T	c.(9955-9957)ATC>ATT	p.I3319I	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3319	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGATCCGCATGATGAGGTGAG	0.532									Kartagener_syndrome				39	110					0	0	0.013114	0	0
DNAH5	1767	broad.mit.edu	37	5	13781008	13781008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:13781008C>T	uc003jfd.2	-	53	8923	c.8881G>A	c.(8881-8883)GGA>AGA	p.G2961R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2961	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCTGCTTTCCTGATCCGCCC	0.468									Kartagener_syndrome				9	21					0	0	0.004482	0	0
DNAH5	1767	broad.mit.edu	37	5	13839571	13839571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:13839571C>T	uc003jfd.2	-	35	5818	c.5776G>A	c.(5776-5778)GAA>AAA	p.E1926K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1926	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCAGAATCTTCGTTAAAGTAA	0.383									Kartagener_syndrome				22	50					0	0	0.014323	0	0
DNAH5	1767	broad.mit.edu	37	5	13885137	13885137	+	Missense_Mutation	SNP	G	A	A	rs143673459		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:13885137G>A	uc003jfd.2	-	19	2986	c.2944C>T	c.(2944-2946)CGC>TGC	p.R982C		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	982	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATACGTTTGCGAATGGCCTCT	0.418									Kartagener_syndrome				25	46					0	0	0.021523	0	0
IL7R	3575	broad.mit.edu	37	5	35876446	35876446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:35876446G>A	uc003jjs.2	+	8	1327	c.1238G>A	c.(1237-1239)AGC>AAC	p.S413N	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	413	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			ACTACAAACAGCACGCTGCCC	0.522													16	34					0	0	0.003163	0	0
LIFR	3977	broad.mit.edu	37	5	38490385	38490385	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:38490385G>A	uc010ive.1	-	15	2406	c.2074C>T	c.(2074-2076)CGA>TGA	p.R692*	LIFR_uc003jli.2_Nonsense_Mutation_p.R692*	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	692	Fibronectin type-III 5.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					ATACCTGGTCGAAACTCATCT	0.279			T	PLAG1	salivary adenoma								24	65					0	0	0.004656	0	0
OSMR	9180	broad.mit.edu	37	5	38881857	38881857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:38881857G>A	uc003jln.1	+	4	776	c.409G>A	c.(409-411)GAA>AAA	p.E137K	OSMR_uc003jlm.1_Missense_Mutation_p.E137K	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	137	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TTCCTGGGAGGAAGTCAGTGG	0.418													30	82					0	0	0.019004	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41049459	41049459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:41049459C>T	uc003jmj.3	-	14	1914	c.1424G>A	c.(1423-1425)AGA>AAA	p.R475K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.R30K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	475							binding			ovary(6)|central_nervous_system(2)	8						AATCAGAATTCTGATGATACT	0.478													9	22					0	0	0.004482	0	0
C6	729	broad.mit.edu	37	5	41195920	41195920	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:41195920G>A	uc003jmk.2	-	5	771	c.561C>T	c.(559-561)ATC>ATT	p.I187I	C6_uc003jml.1_Silent_p.I187I	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	187	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GTACACTAGGGATGGGATTAT	0.428													25	63					0	0	0.006320	0	0
ITGA2	3673	broad.mit.edu	37	5	52351403	52351403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:52351403G>A	uc003joy.2	+	8	958	c.815G>A	c.(814-816)CGA>CAA	p.R272Q	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.R196Q|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	272	Extracellular (Potential).|VWFA.				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				GGTGGGCGACGAAGTGCTACG	0.373													17	50					0	0	0.004990	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64538006	64538006	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:64538006G>A	uc003jtp.2	-	15	2672	c.1858C>T	c.(1858-1860)CGA>TGA	p.R620*	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Nonsense_Mutation_p.R241*	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	620					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TGTTTCTCTCGAAAATCTCGG	0.378													28	41					0	0	0.005443	0	0
SV2C	22987	broad.mit.edu	37	5	75427754	75427754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:75427754C>T	uc003kei.1	+	2	313	c.179C>T	c.(178-180)CCG>CTG	p.P60L		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	60	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		GACTACTACCCGGCTGGAGAA	0.493													23	43					0	0	0.018920	0	0
CRHBP	1393	broad.mit.edu	37	5	76251650	76251650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:76251650G>A	uc003ker.2	+	4	786	c.506G>A	c.(505-507)GGA>GAA	p.G169E	CRHBP_uc010izx.2_Missense_Mutation_p.G169E	NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein	169					female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		CCAGGAAATGGATTCACATTA	0.443													113	236					0	0	0.014410	0	0
TMEM161B	153396	broad.mit.edu	37	5	87564666	87564666	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:87564666G>A	uc003kjc.2	-	1	1	c.-124_splice	c.e1-1		TMEM161B_uc011cty.1_Splice_Site|TMEM161B_uc010jax.2_Splice_Site|TMEM161B_uc011ctz.1_Splice_Site|uc003kjd.2_5'Flank|uc003kje.2_5'Flank	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B							integral to membrane				skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		CGGCTCTGCCGGAAGTTGTGC	0.622													4	7					0	0	0.009096	0	0
GPR98	84059	broad.mit.edu	37	5	89925204	89925204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:89925204G>A	uc003kju.2	+	9	1783	c.1687G>A	c.(1687-1689)GGA>AGA	p.G563R	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	563	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CATTCCTGCTGGAGCTGTGGA	0.398													16	36					0	0	0.004990	0	0
GPR98	84059	broad.mit.edu	37	5	90459687	90459687	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:90459687G>A	uc003kju.2	+	90	18987	c.18891G>A	c.(18889-18891)AGG>AGA	p.R6297R	GPR98_uc003kjt.2_Silent_p.R4003R|GPR98_uc003kjw.2_Silent_p.R1958R|GPR98_uc003kjx.2_Silent_p.R325R	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	6297	Cytoplasmic (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGGAGCTCAGGAGGATACCCA	0.502													5	10					0	0	0.001984	0	0
MCTP1	79772	broad.mit.edu	37	5	94353169	94353169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:94353169C>T	uc003kkx.2	-	2	740	c.740G>A	c.(739-741)GGA>GAA	p.G247E	MCTP1_uc003kkv.2_Missense_Mutation_p.G26E|MCTP1_uc003kkw.2_Missense_Mutation_p.G26E|MCTP1_uc003kkz.2_Intron	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	247					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		ATTACTGGTTCCAGCAGTGTT	0.378													30	46					0	0	0.008361	0	0
LNPEP	4012	broad.mit.edu	37	5	96333773	96333773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:96333773C>T	uc003kmv.1	+	8	2091	c.1577C>T	c.(1576-1578)TCA>TTA	p.S526L	LNPEP_uc003kmw.1_Missense_Mutation_p.S512L	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	526	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		TCCTTAAATTCATCTCATCCA	0.294													18	62					0	0	0.004990	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101575017	101575017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:101575017C>T	uc003knm.2	-	12	2239	c.1952G>A	c.(1951-1953)GGA>GAA	p.G651E		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	651	Extracellular (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		TCCTTTAATTCCACAATCATT	0.333													22	43					0	0	0.014323	0	0
TSSK1B	83942	broad.mit.edu	37	5	112769665	112769665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:112769665G>A	uc003kqm.2	-	1	1064	c.872C>T	c.(871-873)TCC>TTC	p.S291F	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	291					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		AGTTCCCCGGGAACTCTCCCC	0.632													16	26					0	0	0.004990	0	0
DMXL1	1657	broad.mit.edu	37	5	118487677	118487677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:118487677C>T	uc003ksd.2	+	19	4829	c.4648C>T	c.(4648-4650)CAT>TAT	p.H1550Y	DMXL1_uc010jcl.1_Missense_Mutation_p.H1550Y	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1550										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TGTTCGACTCCATACCTTTCT	0.373													17	58					0	0	0.012319	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139905704	139905704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:139905704C>T	uc003lfs.1	+	26	4740	c.4616C>T	c.(4615-4617)CCC>CTC	p.P1539L	ANKHD1_uc003lfr.2_Missense_Mutation_p.P1539L|ANKHD1_uc003lfu.1_Missense_Mutation_p.P1019L|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.P278L|ANKHD1_uc003lfw.2_Missense_Mutation_p.P177L|ANKHD1_uc010jfl.2_5'UTR|ANKHD1-EIF4EBP3_uc003lfx.1_5'Flank	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1539						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGACAACTCCCAGCACCAAT	0.413													50	106					0	0	0.014410	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188595	140188595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:140188595C>T	uc003lhi.2	+	1	1924	c.1823C>T	c.(1822-1824)TCG>TTG	p.S608L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.S608L|PCDHA4_uc011daa.1_Missense_Mutation_p.S608L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	608	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGTGGCTTTCGTACGAGCTG	0.677													22	63					0	0	0.014323	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433185	140433185	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:140433185C>T	uc003lik.1	+	1	2207	c.2130C>T	c.(2128-2130)TTC>TTT	p.F710F		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	710	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAGTGATCTTCATTATACATG	0.348													23	67					0	0	0.012319	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433453	140433453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:140433453G>A	uc003lik.1	+	1	2475	c.2398G>A	c.(2398-2400)GAT>AAT	p.D800N		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	800	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCAAATTCTGATAGGAATAA	0.443													37	65					0	0	0.019004	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140788613	140788613	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:140788613C>T	uc003lkj.1	+	1	844	c.844C>T	c.(844-846)CGA>TGA	p.R282*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Nonsense_Mutation_p.R282*	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	282	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTACTACTTCCGAAGCACTGC	0.428													28	43					0	0	0.006320	0	0
PCDH1	5097	broad.mit.edu	37	5	141236975	141236975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:141236975G>A	uc003llp.2	-	4	3278	c.3161C>T	c.(3160-3162)TCC>TTC	p.S1054F		NM_032420	NP_115796	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 2 precursor	Error:Variant_position_missing_in_Q08174_after_alignment					cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		ACTGTGCTGGGATGGGTCCTG	0.622													5	23					0	0	0.001984	0	0
GRXCR2	643226	broad.mit.edu	37	5	145246227	145246227	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:145246227G>T	uc003lns.1	-	2	401	c.401C>A	c.(400-402)ACC>AAC	p.T134N		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	134											0						GTCCATTGGGGTTCGAATGAT	0.403													26	63					9.78306e-22	1.07476e-21	0.009535	1	0
LARS	51520	broad.mit.edu	37	5	145519825	145519825	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:145519825C>T	uc003lnx.1	-	21	2329	c.2091_splice	c.e21-1	p.S697_splice	LARS_uc011dbq.1_Splice_Site_p.S651_splice|LARS_uc011dbr.1_Splice_Site_p.S643_splice|LARS_uc011dbs.1_Splice_Site_p.S670_splice	NM_020117	NP_064502	Q9P2J5	SYLC_HUMAN	leucyl-tRNA synthetase						leucyl-tRNA aminoacylation	cytosol	ATP binding|leucine-tRNA ligase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Leucine(DB00149)	CCATTTGTCACTTCACAGATA	0.343													7	39					0	0	0.001984	0	0
LARS	51520	broad.mit.edu	37	5	145523002	145523002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:145523002C>T	uc003lnx.1	-	19	2088	c.1850G>A	c.(1849-1851)GGA>GAA	p.G617E	LARS_uc011dbq.1_Missense_Mutation_p.G571E|LARS_uc011dbr.1_Missense_Mutation_p.G563E|LARS_uc011dbs.1_Missense_Mutation_p.G590E	NM_020117	NP_064502	Q9P2J5	SYLC_HUMAN	leucyl-tRNA synthetase	617					leucyl-tRNA aminoacylation	cytosol	ATP binding|leucine-tRNA ligase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Leucine(DB00149)	CTCTGCCTGTCCATGCAAGTT	0.418													70	184					0	0	0.014410	0	0
KIF4B	285643	broad.mit.edu	37	5	154394176	154394176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:154394176G>A	uc010jih.1	+	1	917	c.757G>A	c.(757-759)GAA>AAA	p.E253K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	253	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AACCAAGGCTGAAGGGGATCG	0.428													24	61					0	0	0.018920	0	0
RANBP17	64901	broad.mit.edu	37	5	170667962	170667962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:170667962C>T	uc003mba.2	+	23	2469	c.2453C>T	c.(2452-2454)TCA>TTA	p.S818L	RANBP17_uc003mbb.2_Missense_Mutation_p.S143L|RANBP17_uc003mbd.2_Missense_Mutation_p.S181L|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	818					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGGAGCCTCTCAAAAGATCAG	0.413			T	TRD@	ALL								34	78					0	0	0.019004	0	0
ERGIC1	57222	broad.mit.edu	37	5	172336721	172336721	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:172336721C>T	uc003mbw.3	+	4	401	c.207C>T	c.(205-207)ATC>ATT	p.I69I	ERGIC1_uc003mby.3_5'UTR|ERGIC1_uc011dfa.1_5'UTR|ERGIC1_uc003mbz.3_Silent_p.I24I	NM_001031711	NP_001026881	Q969X5	ERGI1_HUMAN	endoplasmic reticulum-golgi intermediate	69	Lumenal (Potential).				ER to Golgi vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	protein binding			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GTGGCAAGATCGACGTCAGTC	0.522													27	82					0	0	0.010818	0	0
UIMC1	51720	broad.mit.edu	37	5	176396036	176396036	+	Silent	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:176396036A>G	uc011dfp.1	-	6	887	c.720T>C	c.(718-720)GGT>GGC	p.G240G	UIMC1_uc003mfc.1_Silent_p.G117G|UIMC1_uc003mfd.1_Intron|UIMC1_uc003mfg.1_Intron|UIMC1_uc003mff.1_Intron	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	240					double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAAAAGCAGAACCCCTCCCAG	0.527													44	77					0	0	0.014410	0	0
LMAN2	10960	broad.mit.edu	37	5	176765561	176765561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:176765561G>A	uc003mge.2	-	3	598	c.361C>T	c.(361-363)CAC>TAC	p.H121Y	LMAN2_uc003mgd.2_Missense_Mutation_p.H121Y	NM_006816	NP_006807	Q12907	LMAN2_HUMAN	lectin, mannose-binding 2 precursor	121	Lumenal (Potential).|L-type lectin-like.				protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	metal ion binding|sugar binding				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCTGTGCCGTGGACTTTGAAG	0.622													61	129					0	0	0.014410	0	0
DDX41	51428	broad.mit.edu	37	5	176943935	176943935	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:176943935C>T	uc003mho.2	-	1	33	c.12G>A	c.(10-12)TCG>TCA	p.S4S	DDX41_uc003mhm.2_5'Flank|DDX41_uc003mhn.2_5'Flank|DDX41_uc003mhp.2_5'UTR|DDX41_uc003mhq.1_5'UTR	NM_016222	NP_057306	Q9UJV9	DDX41_HUMAN	DEAD-box protein abstrakt	4					apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			GTTCGGGTTCCGACTCCTCCA	0.662													10	32					0	0	0.008291	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166750	180166750	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr5:180166750G>A	uc003mmf.1	-	1	309	c.309C>T	c.(307-309)ATC>ATT	p.I103I		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGGCTAGGTAGATGAAGAGCT	0.602													12	29					0	0	0.013537	0	0
CDYL	9425	broad.mit.edu	37	6	4735069	4735069	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:4735069C>T	uc003mwi.2	+	3	308	c.177C>T	c.(175-177)CCC>CCT	p.P59P		NM_001143971	NP_001137443	Q9Y232	CDYL1_HUMAN	chromodomain protein, Y chromosome-like isoform	59					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	histone acetyltransferase activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0901)|Lung NSC(90;0.244)		OV - Ovarian serous cystadenocarcinoma(45;0.182)		AGCAGCCTCCCGCTTTACAGG	0.552													34	53					0	0	0.013726	0	0
SYCP2L	221711	broad.mit.edu	37	6	10961628	10961628	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:10961628G>A	uc003mzo.2	+	27	2642	c.2346G>A	c.(2344-2346)AAG>AAA	p.K782K	SYCP2L_uc010jow.2_Silent_p.K402K	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	782						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			ACCTTGAGAAGGAGGTTCTGG	0.383													16	53					0	0	0.004007	0	0
HIVEP1	3096	broad.mit.edu	37	6	12164380	12164380	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:12164380C>T	uc003nac.2	+	9	8022	c.7843C>T	c.(7843-7845)CTG>TTG	p.L2615L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2615					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				AAAAAAAGTTCTGAATCCACC	0.542													20	52					0	0	0.012319	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24515510	24515510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:24515510C>T	uc003neg.2	+	5	870	c.842C>T	c.(841-843)TCC>TTC	p.S281F	ALDH5A1_uc003nef.2_Missense_Mutation_p.S294F	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	281					acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	TCCAAAATTTCCTTTACTGGT	0.358													14	46					0	0	0.016723	0	0
KIAA0319	9856	broad.mit.edu	37	6	24556956	24556956	+	Silent	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:24556956A>G	uc011djo.1	-	18	2973	c.2736T>C	c.(2734-2736)GGT>GGC	p.G912G	KIAA0319_uc011djp.1_Silent_p.G867G|KIAA0319_uc003neh.1_Silent_p.G912G|KIAA0319_uc011djq.1_Silent_p.G903G|KIAA0319_uc011djr.1_Silent_p.G912G|KIAA0319_uc010jpt.1_Silent_p.G323G	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	912	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						TCAGAAGGCAACCTGCAAAGA	0.478													8	45					0	0	0.004482	0	0
SLC17A3	10786	broad.mit.edu	37	6	25862608	25862608	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:25862608C>T	uc003nfi.3	-	3	266	c.156G>A	c.(154-156)ACG>ACA	p.T52T	SLC17A3_uc003nfk.3_Silent_p.T52T|SLC17A3_uc011djz.1_Silent_p.T52T|SLC17A3_uc011dka.1_Silent_p.T52T	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	52					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						TTTGTGCTATCGTTGTGAAAT	0.413													18	74					0	0	0.008871	0	0
ZNF165	7718	broad.mit.edu	37	6	28057240	28057240	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:28057240T>A	uc003nkg.2	+	5	2534	c.1450T>A	c.(1450-1452)TTA>ATA	p.L484I	ZNF165_uc003nkh.2_Missense_Mutation_p.L484I|ZNF165_uc003nki.3_Missense_Mutation_p.L484I|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	484					viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGAAAACCTATTAATGTAAGG	0.353													15	29					0	0	0.003163	0	0
SCAND3	114821	broad.mit.edu	37	6	28540378	28540378	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:28540378C>T	uc003nlo.2	-	4	3906	c.3288G>A	c.(3286-3288)GTG>GTA	p.V1096V		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1096					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ctgtccaattcacatctttaa	0													18	57					0	0	0.004990	0	0
HLA-F	3134	broad.mit.edu	37	6	29694733	29694733	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:29694733A>T	uc003nno.3	+	7	1234	c.1110A>T	c.(1108-1110)CAA>CAT	p.Q370H	HLA-F_uc011dlx.1_Missense_Mutation_p.Q370H|HLA-F_uc011dly.1_RNA|LOC285830_uc003nnp.2_RNA|LOC285830_uc011dlz.1_RNA	NM_001098479	NP_001091949	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	Error:Variant_position_missing_in_P30511_after_alignment					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						TGCTCTTCCAAGGATATTTGG	0.493													40	165					0	0	0.007835	0	0
HLA-G	3135	broad.mit.edu	37	6	29796330	29796330	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:29796330C>T	uc003nnw.2	+	4	532	c.354C>T	c.(352-354)ACC>ACT	p.T118T	HLA-G_uc011dmb.1_Silent_p.T90T|HLA-G_uc003raj.3_Silent_p.T123T|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118	P17693	HLAG_HUMAN	major histocompatibility complex, class I, G	118	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			ovary(3)|central_nervous_system(1)	4						GTTCTCACACCCTCCAGTGGA	0.667													16	86					0	0	0.004007	0	0
TRIM26	7726	broad.mit.edu	37	6	30153703	30153703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:30153703G>A	uc003npr.2	-	9	1779	c.1570C>T	c.(1570-1572)CCC>TCC	p.P524S	TRIM26_uc003nps.2_Missense_Mutation_p.P524S|TRIM26_uc010jry.2_Missense_Mutation_p.P254S|TRIM26_uc003npt.2_Missense_Mutation_p.P524S	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	524	B30.2/SPRY.						DNA binding|zinc ion binding			ovary(2)|lung(1)	3						CACAGGAAGGGGACCAGGCGC	0.592													10	46					0	0	0.008291	0	0
C6orf27	80737	broad.mit.edu	37	6	31742374	31742374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:31742374C>T	uc011dog.1	-	5	878	c.640G>A	c.(640-642)GAG>AAG	p.E214K	C6orf27_uc003nxd.2_5'UTR|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	214						extracellular region				ovary(3)	3						CAGCTCAACTCCTCGCAATCG	0.577													78	294					0	0	0.014410	0	0
CYP21A2	1589	broad.mit.edu	37	6	32008216	32008216	+	Missense_Mutation	SNP	G	A	A	rs150804717		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:32008216G>A	uc003nze.1	+	8	1091	c.973G>A	c.(973-975)GAA>AAA	p.E325K	CYP21A2_uc003nzf.1_Missense_Mutation_p.E295K	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	324					glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						GCTAGACCACGAACTGGGCCC	0.682													57	268					0	0	0.014410	0	0
CLPS	1208	broad.mit.edu	37	6	35765054	35765054	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:35765054G>A	uc003ole.1	-	1	49	c.12C>T	c.(10-12)ATC>ATT	p.I4I	CLPS_uc003olf.1_Silent_p.I4I	NM_001832	NP_001823	P04118	COL_HUMAN	colipase preproprotein	4					lipid catabolic process|lipid digestion|retinoid metabolic process|steroid metabolic process	extracellular region					0						GGAGGATCAGGATCTTCTCCA	0.607													17	87					0	0	0.007413	0	0
MDGA1	266727	broad.mit.edu	37	6	37631751	37631751	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:37631751G>A	uc003onu.1	-	2	1378	c.199C>T	c.(199-201)CGA>TGA	p.R67*		NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	67	Ig-like 1.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						ACCTGGGGTCGAGGGTGCCCT	0.602													10	56					0	0	0.010729	0	0
LRFN2	57497	broad.mit.edu	37	6	40400344	40400344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:40400344C>T	uc003oph.1	-	2	974	c.509G>A	c.(508-510)CGA>CAA	p.R170Q		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	170	LRR 5.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GACCATGCGTCGCACGGAGTC	0.602													19	79					0	0	0.010504	0	0
UNC5CL	222643	broad.mit.edu	37	6	41002663	41002663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:41002663C>T	uc003opi.2	-	2	240	c.151G>A	c.(151-153)GAA>AAA	p.E51K	UNC5CL_uc010jxe.1_Missense_Mutation_p.E51K	NM_173561	NP_775832	Q8IV45	UN5CL_HUMAN	unc-5 homolog C-like	51	Cytoplasmic (Potential).				signal transduction	cytoplasm|integral to membrane				ovary(2)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					GACACTGGTTCCTCTTGACCA	0.592													22	73					0	0	0.014323	0	0
TDRD6	221400	broad.mit.edu	37	6	46660361	46660361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:46660361C>T	uc003oyj.2	+	1	4496	c.4496C>T	c.(4495-4497)TCT>TTT	p.S1499F	TDRD6_uc010jze.2_Missense_Mutation_p.S1493F	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1499					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			AGTTCAAAGTCTGTTAACAAA	0.358													15	48					0	0	0.003163	0	0
PLA2G7	7941	broad.mit.edu	37	6	46678293	46678293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:46678293C>T	uc010jzf.2	-	8	1035	c.766G>A	c.(766-768)GAA>AAA	p.E256K	PLA2G7_uc010jzg.1_Missense_Mutation_p.E256K|PLA2G7_uc011dwd.1_Missense_Mutation_p.E211K|PLA2G7_uc011dwe.1_Missense_Mutation_p.E129K	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	256					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			TTCAGTTGTTCCATATCAAAC	0.328													14	62					0	0	0.016723	0	0
MEP1A	4224	broad.mit.edu	37	6	46806867	46806867	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:46806867G>A	uc010jzh.1	+	14	2277	c.2235G>A	c.(2233-2235)AGG>AGA	p.R745R	MEP1A_uc011dwg.1_Silent_p.R467R|MEP1A_uc011dwh.1_Silent_p.R773R|MEP1A_uc011dwi.1_Silent_p.R645R	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	745	Cytoplasmic (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			AAAGGCCAAGGAAGTGACCTG	0.557													18	49					0	0	0.007413	0	0
GCM1	8521	broad.mit.edu	37	6	52993247	52993247	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:52993247C>T	uc003pbp.2	-	6	1277	c.1068G>A	c.(1066-1068)TGG>TGA	p.W356*		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	356						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					CTGGATTTGGCCATAATGGGG	0.488													29	71					0	0	0.012213	0	0
TINAG	27283	broad.mit.edu	37	6	54173504	54173504	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:54173504C>T	uc003pcj.2	+	1	302	c.156C>T	c.(154-156)TTC>TTT	p.F52F	TINAG_uc003pci.2_Silent_p.F52F|TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	52					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GAGCCATTTTCCAAGGGCAAT	0.423													47	93					0	0	0.014410	0	0
FAM83B	222584	broad.mit.edu	37	6	54805757	54805757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:54805757G>A	uc003pck.2	+	5	2104	c.1988G>A	c.(1987-1989)CGA>CAA	p.R663Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	663										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CTTAAAAGGCGAAGTTTCCCG	0.343													23	59					0	0	0.004656	0	0
COL21A1	81578	broad.mit.edu	37	6	55932118	55932118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:55932118C>T	uc003pcs.2	-	23	2334	c.2102G>A	c.(2101-2103)GGA>GAA	p.G701E	COL21A1_uc010jzz.2_Missense_Mutation_p.G86E|COL21A1_uc011dxg.1_Intron|COL21A1_uc011dxh.1_Missense_Mutation_p.G86E|COL21A1_uc003pcr.2_Missense_Mutation_p.E59K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	701	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			ACCTTGATTTCCTTTGTCCCC	0.299													12	32					0	0	0.016723	0	0
DST	667	broad.mit.edu	37	6	56494203	56494203	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:56494203G>A	uc003pdf.2	-	31	4249	c.4221C>T	c.(4219-4221)TTC>TTT	p.F1407F	DST_uc003pcz.3_Silent_p.F1229F|DST_uc011dxj.1_Silent_p.F1258F|DST_uc011dxk.1_Silent_p.F1269F|DST_uc003pcy.3_Silent_p.F903F|DST_uc003pdb.2_Silent_p.F903F|DST_uc003pdc.3_Silent_p.F903F|DST_uc003pdd.3_Silent_p.F903F	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	1229					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CTAAGGCATGGAATACCTGTC	0.338													14	51					0	0	0.003163	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904374	73904374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:73904374C>T	uc003pgk.2	+	14	2383	c.2036C>T	c.(2035-2037)TCA>TTA	p.S679L	KCNQ5_uc011dyh.1_Missense_Mutation_p.S698L|KCNQ5_uc011dyi.1_Missense_Mutation_p.S689L|KCNQ5_uc010kat.2_Missense_Mutation_p.S670L|KCNQ5_uc011dyj.1_Missense_Mutation_p.S569L|KCNQ5_uc011dyk.1_Missense_Mutation_p.S429L	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	679					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TTATCCAGATCAACTAGTGCC	0.478													47	44					0	0	0.014410	0	0
PRDM1	639	broad.mit.edu	37	6	106555230	106555230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:106555230G>A	uc003prd.2	+	7	2581	c.2347G>A	c.(2347-2349)GGA>AGA	p.G783R	PRDM1_uc003pre.2_Missense_Mutation_p.G649R	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	783					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CATGGGGAATGGACTCCTCTC	0.483			D|N|Mis|F|S		DLBCL								24	25					0	0	0.014323	0	0
C6orf204	387119	broad.mit.edu	37	6	118801628	118801628	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:118801628G>A	uc003pxz.1	-	9	2382	c.1794C>T	c.(1792-1794)CCC>CCT	p.P598P		NM_001042475	NP_001035940	Q5SZL2	CF204_HUMAN	chromosome 6 open reading frame 204 isoform a	598	Potential.					centrosome				breast(1)	1		all_cancers(87;0.0814)|all_epithelial(87;0.115)		GBM - Glioblastoma multiforme(226;0.0114)|all cancers(137;0.035)|OV - Ovarian serous cystadenocarcinoma(136;0.0618)		CATCTAACATGGGAAGGCGGA	0.338													21	30					0	0	0.012319	0	0
THEMIS	387357	broad.mit.edu	37	6	128134112	128134112	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:128134112C>T	uc003qbi.2	-	5	1993	c.1674G>A	c.(1672-1674)CCG>CCA	p.P558P	THEMIS_uc010kfa.2_Silent_p.P461P|THEMIS_uc011ebt.1_Silent_p.P558P|THEMIS_uc010kfb.2_Silent_p.P523P	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	558					negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						AGGGGTGTTTCGGAGGGCGAG	0.483													41	36					0	0	0.006999	0	0
IPCEF1	26034	broad.mit.edu	37	6	154533966	154533966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:154533966C>T	uc003qpx.2	-	9	628	c.472G>A	c.(472-474)GAA>AAA	p.E158K	OPRM1_uc003qpt.1_Intron|IPCEF1_uc003qpv.2_Missense_Mutation_p.E29K|IPCEF1_uc003qpw.2_Missense_Mutation_p.E159K|IPCEF1_uc010kjh.2_Missense_Mutation_p.E159K	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	158					response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						TCTGGATCTTCCTGTTCACTT	0.418													6	7					0	0	0.001168	0	0
ARID1B	57492	broad.mit.edu	37	6	157527627	157527627	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:157527627C>T	uc003qqn.2	+	20	5450	c.5298C>T	c.(5296-5298)TTC>TTT	p.F1766F	ARID1B_uc003qqo.2_Silent_p.F1726F|ARID1B_uc003qqp.2_Silent_p.F1713F	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1771					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CCAGTAAGTTCGACAAGCTGC	0.512													51	44					0	0	0.014410	0	0
C6orf118	168090	broad.mit.edu	37	6	165706919	165706919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:165706919G>A	uc003qum.3	-	6	1139	c.1103C>T	c.(1102-1104)TCT>TTT	p.S368F	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	368	Potential.										0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		TTCCTTTGCAGACTGCAGCAA	0.453													46	72					0	0	0.014410	0	0
T	6862	broad.mit.edu	37	6	166571956	166571956	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:166571956G>A	uc003quu.1	-	9	1648	c.1155C>T	c.(1153-1155)CCC>CCT	p.P385P	T_uc003qut.1_Silent_p.P386P|T_uc003quv.1_Silent_p.P327P	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	385					anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		GATGGGTGAGGGGTGTGTAGT	0.711									Chordoma_Familial_Clustering_of				19	28					0	0	0.010504	0	0
TFAMP1	260341	broad.mit.edu	37	7	1654682	1654682	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:1654682G>A	uc003slb.2	+	1		c.577G>A				NR_001288				Homo sapiens transcription factor A, mitochondrial pseudogene 1 (TFAMP1), non-coding RNA.												0						ACACTGCTTGGAAAACCAAAA	0.358													4	14					0	0	0.014758	0	0
LFNG	3955	broad.mit.edu	37	7	2565122	2565122	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:2565122A>T	uc003smf.2	+	4	673	c.656A>T	c.(655-657)CAC>CTC	p.H219L	LFNG_uc003smg.2_Missense_Mutation_p.H219L	NM_001040167	NP_001035257	Q8NES3	LFNG_HUMAN	lunatic fringe isoform a	219	Lumenal (Potential).				organ morphogenesis	extracellular region|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.54e-14)		AGCTACCCGCACACGCGGGAC	0.672													10	25					0	0	0.013537	0	0
COL28A1	340267	broad.mit.edu	37	7	7571504	7571504	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:7571504G>A	uc003src.1	-	3	273	c.156C>T	c.(154-156)ATC>ATT	p.I52I	COL28A1_uc011jxe.1_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	52	VWFA 1.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		AGCTGTCCACGATGAAGACAA	0.363													19	23					0	0	0.016522	0	0
MEOX2	4223	broad.mit.edu	37	7	15666406	15666406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:15666406C>T	uc003stc.2	-	2	936	c.655G>A	c.(655-657)GAG>AAG	p.E219K	MEOX2_uc011jxw.1_Missense_Mutation_p.E219K	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	219	Homeobox.				blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		ACTGCTATCTCGTATCGCCTC	0.418													25	64					0	0	0.007291	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22165256	22165256	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:22165256G>A	uc003svg.2	-	25	2356	c.2043C>T	c.(2041-2043)GTC>GTT	p.V681V		NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	531	Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TCAGGGTTCGGACAGTGTCTG	0.468													35	79					0	0	0.005524	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378643	31378643	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:31378643C>T	uc003tch.2	-	2	593	c.240G>A	c.(238-240)AGG>AGA	p.R80R		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	80	Nuclear localization signal (Potential).				cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						TCTTTTTTTTCCTAAGACCCC	0.393													45	132					0	0	0.014410	0	0
NT5C3	51251	broad.mit.edu	37	7	33063712	33063712	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:33063712C>T	uc003tdk.2	-	3	338	c.261G>A	c.(259-261)ACG>ACA	p.T87T	AVL9_uc011kai.1_Intron|NT5C3_uc003tdi.2_Silent_p.T48T|NT5C3_uc003tdj.2_Silent_p.T48T	NM_001002010	NP_001002010	Q9H0P0	5NT3_HUMAN	5'-nucleotidase, cytosolic III isoform 1	87					nucleotide metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol|endoplasmic reticulum	2'-phosphotransferase activity|5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1			GBM - Glioblastoma multiforme(11;0.0894)			TATCAAAGTCCGTTATTATCT	0.348													5	16					0	0	0.014758	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35129946	35129947	+	Nonsense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:35129946_35129947AC>TT	uc003teq.1	-	21	2345_2346	c.1238_1239GT>AA	c.(1237-1239)TGT>TAA	p.C413*	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TTCTCACAACACACCATGCCTC	0.322													34	101					0	0	0.004672	0	0
AMPH	273	broad.mit.edu	37	7	38433666	38433666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:38433666G>A	uc003tgu.2	-	18	1616	c.1547C>T	c.(1546-1548)ACC>ATC	p.T516I	AMPH_uc003tgv.2_Missense_Mutation_p.T474I|AMPH_uc003tgt.2_Missense_Mutation_p.T401I|AMPH_uc003tgw.1_Missense_Mutation_p.T539I|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	516					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						ACCCTCAGTGGTTTCAGTTCC	0.602													36	121					0	0	0.021022	0	0
POU6F2	11281	broad.mit.edu	37	7	39379543	39379543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:39379543C>T	uc003thb.1	+	5	856	c.814C>T	c.(814-816)CCC>TCC	p.P272S	POU6F2_uc010kxo.2_Missense_Mutation_p.P264S	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	272	Pro-rich.|Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						gagctccagccccCCGCAGAA	0.303													19	46					0	0	0.008871	0	0
MRPL32	64983	broad.mit.edu	37	7	42977019	42977019	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:42977019C>T	uc003tia.2	+	3	458	c.411C>T	c.(409-411)ATC>ATT	p.I137I	MRPL32_uc003tib.2_RNA|MRPL32_uc003tic.2_Silent_p.I84I	NM_031903	NP_114109	Q9BYC8	RM32_HUMAN	mitochondrial ribosomal protein L32 precursor	137					translation	large ribosomal subunit|mitochondrial ribosome	structural constituent of ribosome				0						CTGCAGAAATCAGACGACAGA	0.488													13	25					0	0	0.013537	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44805812	44805812	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:44805812C>T	uc003tlr.2	+	17	2415	c.2292C>T	c.(2290-2292)ACC>ACT	p.T764T	ZMIZ2_uc003tlq.2_Silent_p.T706T|ZMIZ2_uc003tls.2_Silent_p.T738T|ZMIZ2_uc003tlt.2_Silent_p.T387T|ZMIZ2_uc010kyj.2_Silent_p.T286T|ZMIZ2_uc003tlu.2_Silent_p.T45T|ZMIZ2_uc010kyk.1_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	764	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						TCCCACCCACCACGCCCAGCA	0.632													14	59					0	0	0.020292	0	0
LOC643955	643955	broad.mit.edu	37	7	62758729	62758729	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:62758729C>T	uc011kdj.1	-	2	149	c.81G>A	c.(79-81)CTG>CTA	p.L27L		NR_003952				Homo sapiens cDNA clone IMAGE:30377995, containing frame-shift errors.												0						GCCATTCCTCCAGAGAGAATT	0.428													14	37					0	0	0.020292	0	0
ZNF679	168417	broad.mit.edu	37	7	63720636	63720636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:63720636C>T	uc003tsx.2	+	3	346	c.77C>T	c.(76-78)TCT>TTT	p.S26F		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	26	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATAGAATTCTCTCTGGAGGAG	0.418													25	51					0	0	0.016522	0	0
HIP1	3092	broad.mit.edu	37	7	75174474	75174474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:75174474G>A	uc003uds.1	-	26	2613	c.2572C>T	c.(2572-2574)CCT>TCT	p.P858S	HIP1_uc011kfz.1_Missense_Mutation_p.P684S	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	858	I/LWEQ.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						AACTCTTTAGGGGATGCTGTA	0.299			T	PDGFRB	CMML								41	110					0	0	0.014410	0	0
PION	54103	broad.mit.edu	37	7	77010632	77010632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:77010632C>T	uc003ugf.2	-	8	645	c.566G>A	c.(565-567)GGA>GAA	p.G189E	PION_uc003ugg.1_5'UTR	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	189					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						CACTCTATTTCCATCTTCTTG	0.284													13	27					0	0	0.004007	0	0
ABCB1	5243	broad.mit.edu	37	7	87179824	87179824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:87179824C>T	uc003uiz.1	-	12	1602	c.1184G>A	c.(1183-1185)AGA>AAA	p.R395K	ABCB1_uc011khc.1_Missense_Mutation_p.R331K	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	395	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	GTGAACATTTCTGAATTCCAA	0.313													18	55					0	0	0.008871	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763562	92763562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:92763562C>T	uc003umh.1	-	5	2939	c.1723G>A	c.(1723-1725)GAA>AAA	p.E575K	SAMD9L_uc003umj.1_Missense_Mutation_p.E575K|SAMD9L_uc003umi.1_Missense_Mutation_p.E575K|SAMD9L_uc010lfb.1_Missense_Mutation_p.E575K|SAMD9L_uc003umk.1_Missense_Mutation_p.E575K|SAMD9L_uc010lfc.1_Missense_Mutation_p.E575K|SAMD9L_uc010lfd.1_Missense_Mutation_p.E575K|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	575										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AACATATTTTCCATTCCTTTG	0.358													22	48					0	0	0.014323	0	0
PEG10	23089	broad.mit.edu	37	7	94293524	94293524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:94293524C>T	uc011kie.1	+	2	1101	c.884C>T	c.(883-885)TCC>TTC	p.S295F		NM_001040152	NP_001035242	Q86TG7	PEG10_HUMAN	paternally expressed 10 isoform RF1	219	Necessary for interaction with ALK1.				apoptosis|cell differentiation|negative regulation of transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			GAGGAGCTCTCCCACCTCGAG	0.592													35	76					0	0	0.006230	0	0
ASB4	51666	broad.mit.edu	37	7	95167013	95167013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:95167013C>T	uc011kij.1	+	5	1223	c.1223C>T	c.(1222-1224)TCC>TTC	p.S408F		NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	408	SOCS box.				intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			CCTTTGCTTTCCCTCCCATTG	0.408													28	53					0	0	0.008361	0	0
TRRAP	8295	broad.mit.edu	37	7	98609157	98609157	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:98609157A>G	uc003upp.2	+	71	11503	c.11294A>G	c.(11293-11295)AAG>AGG	p.K3765R	TRRAP_uc011kis.1_Missense_Mutation_p.K3736R|TRRAP_uc003upr.2_Missense_Mutation_p.K3471R|TRRAP_uc003ups.2_5'Flank	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3765	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CCAAACTTTAAGGTGGGTCTC	0.622													11	53					0	0	0.008291	0	0
STAG3	10734	broad.mit.edu	37	7	99780444	99780444	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:99780444C>T	uc003utx.1	+	4	473	c.318C>T	c.(316-318)GCC>GCT	p.A106A	STAG3_uc010lgs.1_5'UTR|STAG3_uc011kjk.1_Silent_p.A106A	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	106					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTGTGAAAGCCGCCAAAAGTG	0.458													6	415					0	0	0.004482	0	0
STAG3	10734	broad.mit.edu	37	7	99797259	99797259	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:99797259G>C	uc003utx.1	+	16	1824	c.1669G>C	c.(1669-1671)GGG>CGG	p.G557R	STAG3_uc010lgs.1_Missense_Mutation_p.G345R|STAG3_uc011kjk.1_Missense_Mutation_p.G499R|STAG3_uc003uub.1_5'Flank	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	557					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCGGGTCACTGGGAGGAAGGT	0.582													6	13					0	0	0.003080	0	0
ZAN	7455	broad.mit.edu	37	7	100346076	100346076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:100346076G>A	uc003uwj.2	+	11	1397	c.1232G>A	c.(1231-1233)GGA>GAA	p.G411E	ZAN_uc003uwk.2_Missense_Mutation_p.G411E|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	411	MAM 3.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GGCCCTGCGGGAGGTTTCCCT	0.592													6	12					0	0	0.001984	0	0
ZAN	7455	broad.mit.edu	37	7	100350369	100350369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:100350369C>T	uc003uwj.2	+	14	2806	c.2641C>T	c.(2641-2643)CCC>TCC	p.P881S	ZAN_uc003uwk.2_Missense_Mutation_p.P881S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	881	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACTCACCATCCCCACGGAAAA	0.502													39	79					0	0	0.021022	0	0
CUX1	1523	broad.mit.edu	37	7	101882657	101882657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:101882657C>T	uc003uyx.3	+	23	3718	c.3680C>T	c.(3679-3681)TCT>TTT	p.S1227F	CUX1_uc003uys.3_Missense_Mutation_p.S1238F|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1227					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GAACCGCCCTCTGTCGGCACC	0.662													14	24					0	0	0.004990	0	0
LRWD1	222229	broad.mit.edu	37	7	102108588	102108588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:102108588C>T	uc003uzn.2	+	6	896	c.758C>T	c.(757-759)TCG>TTG	p.S253L	LRWD1_uc003uzo.2_Missense_Mutation_p.S101L	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	253					chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						GCCTCCCCGTCGGCCCAGGTG	0.687													7	11					0	0	0.001984	0	0
RELN	5649	broad.mit.edu	37	7	103126741	103126741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:103126741C>T	uc003vca.2	-	61	10046	c.9886G>A	c.(9886-9888)GGG>AGG	p.G3296R	RELN_uc010liz.2_Missense_Mutation_p.G3296R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3296					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GCCAGCTGCCCACAGCCACTT	0.512													24	62					0	0	0.006320	0	0
RELN	5649	broad.mit.edu	37	7	103281034	103281034	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:103281034G>A	uc003vca.2	-	17	2185	c.2025C>T	c.(2023-2025)CTC>CTT	p.L675L	RELN_uc010liz.2_Silent_p.L675L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	675	EGF-like 1.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AACAGAATTTGAGACATGACG	0.363													8	25					0	0	0.004482	0	0
PUS7	54517	broad.mit.edu	37	7	105148566	105148566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:105148566C>T	uc003vcx.2	-	2	613	c.394G>A	c.(394-396)GAA>AAA	p.E132K	PUS7_uc010lji.2_Missense_Mutation_p.E132K|PUS7_uc003vcy.2_Missense_Mutation_p.E132K|PUS7_uc003vcz.1_Missense_Mutation_p.E132K	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	132					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						ATGTACCTTTCTTTTAAGATT	0.358													12	36					0	0	0.010729	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113558700	113558700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:113558700C>T	uc010ljy.1	-	1	383	c.352G>A	c.(352-354)GAT>AAT	p.D118N		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	118					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TGCATAAGATCTTCTTTTGAA	0.393													15	36					0	0	0.003163	0	0
C7orf58	79974	broad.mit.edu	37	7	120768439	120768439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:120768439G>A	uc003vjq.3	+	11	1753	c.1306G>A	c.(1306-1308)GAA>AAA	p.E436K	C7orf58_uc003vjr.1_Missense_Mutation_p.E436K|C7orf58_uc003vjs.3_Missense_Mutation_p.E436K|C7orf58_uc003vjt.3_Missense_Mutation_p.E216K|C7orf58_uc010lkk.1_Missense_Mutation_p.E216K	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	436						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AATACAGGGTGAAAACTATCA	0.358													25	48					0	0	0.004656	0	0
C7orf58	79974	broad.mit.edu	37	7	120776102	120776102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:120776102C>T	uc003vjq.3	+	14	2104	c.1657C>T	c.(1657-1659)CCA>TCA	p.P553S	C7orf58_uc003vjr.1_Missense_Mutation_p.P553S|C7orf58_uc003vjs.3_Missense_Mutation_p.P553S|C7orf58_uc003vjt.3_Missense_Mutation_p.P333S	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	553						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					aGCTGCAGTTCCACAAATTAA	0.234													5	26					0	0	0.003080	0	0
PAX4	5078	broad.mit.edu	37	7	127253841	127253841	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:127253841G>A	uc010lld.1	-	4	713	c.507C>T	c.(505-507)TTC>TTT	p.F169F	PAX4_uc003vmf.2_Silent_p.F167F|PAX4_uc003vmg.1_Silent_p.F169F|PAX4_uc003vmh.2_Silent_p.F167F	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	177	Homeobox.				cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGCTTGGGGAGAAGATAGTCC	0.612													36	71					0	0	0.005524	0	0
AHCYL2	23382	broad.mit.edu	37	7	129064971	129064971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:129064971C>T	uc011kov.1	+	15	1751	c.1697C>T	c.(1696-1698)CCC>CTC	p.P566L	AHCYL2_uc003vot.2_Missense_Mutation_p.P565L|AHCYL2_uc003vov.2_Missense_Mutation_p.P463L|AHCYL2_uc011kow.1_Missense_Mutation_p.P464L|AHCYL2_uc011kox.1_Missense_Mutation_p.P463L	NM_015328	NP_056143	Q96HN2	SAHH3_HUMAN	S-adenosylhomocysteine hydrolase-like 2 isoform	566					one-carbon metabolic process		adenosylhomocysteinase activity			ovary(2)	2						TACCTGTTGCCCAAGAAGATG	0.448													24	43					0	0	0.016522	0	0
MKLN1	4289	broad.mit.edu	37	7	131149126	131149126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:131149126C>T	uc011kpm.1	+	14	1811	c.1747C>T	c.(1747-1749)CCA>TCA	p.P583S	MKLN1_uc011kpl.1_Missense_Mutation_p.P560S|MKLN1_uc010lmh.2_Missense_Mutation_p.P583S|MKLN1_uc003vqs.2_Missense_Mutation_p.P376S|MKLN1_uc003vqu.2_Missense_Mutation_p.P73S	NM_013255	NP_037387	Q9UL63	MKLN1_HUMAN	muskelin 1, intracellular mediator containing	583					signal transduction	cytoplasm	protein binding			breast(1)	1	Melanoma(18;0.162)					AGAACCATGTCCAAGGTTTGC	0.408													7	27					0	0	0.006214	0	0
BPGM	669	broad.mit.edu	37	7	134346748	134346748	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:134346748G>A	uc003vrv.2	+	3	1030	c.489G>A	c.(487-489)GAG>GAA	p.E163E	BPGM_uc003vrw.2_Silent_p.E163E|BPGM_uc003vrx.2_Silent_p.E163E	NM_199186	NP_954655	P07738	PMGE_HUMAN	bisphosphoglycerate mutase	163					glycolysis|respiratory gaseous exchange		2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity				0						ATGTTCTGGAGAGACTCCTTC	0.453													16	56					0	0	0.004990	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672787	141672787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:141672787G>A	uc003vwx.1	-	1	787	c.703C>T	c.(703-705)CGT>TGT	p.R235C		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	235	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					CTGGGGTCACGAGAGTTTCTG	0.498													26	42					0	0	0.021523	0	0
KEL	3792	broad.mit.edu	37	7	142643320	142643320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:142643320C>T	uc003wcb.2	-	11	1498	c.1288G>A	c.(1288-1290)GCC>ACC	p.A430T		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	430	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GGGCCAAAGGCCTCACGAACA	0.582													9	36					0	0	0.006214	0	0
CLCN1	1180	broad.mit.edu	37	7	143028368	143028368	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:143028368C>T	uc003wcr.1	+	9	1110	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	CLCN1_uc011ktc.1_Silent_p.F3F	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	341					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GAATGGATTTCCCCTTTGACC	0.507													25	86					0	0	0.007291	0	0
FAM131B	9715	broad.mit.edu	37	7	143053691	143053691	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:143053691G>A	uc003wct.2	-	6	2657	c.951C>T	c.(949-951)TCC>TCT	p.S317S	FAM131B_uc010loz.2_Silent_p.S285S|FAM131B_uc003wcu.3_Silent_p.S317S|FAM131B_uc010lpa.2_Silent_p.S345S	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	317											0	Melanoma(164;0.205)					GCACACCTGAGGATGTGACGT	0.592													34	101					0	0	0.013726	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146829338	146829338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:146829338G>A	uc003weu.1	+	8	1601	c.1085G>A	c.(1084-1086)GGA>GAA	p.G362E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	362	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATTTTACAGGGAAATTTGAGC	0.433										HNSCC(39;0.1)			38	64					0	0	0.008740	0	0
SSPO	23145	broad.mit.edu	37	7	149474280	149474280	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:149474280C>T	uc010lpk.2	+	4	324	c.324C>T	c.(322-324)GCC>GCT	p.A108A	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	108					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CAGCCCTTGCCAAAGCCAGTC	0.622													4	9					0	0	0.009096	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217185	150217185	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:150217185A>C	uc003whk.2	+	2	253	c.123A>C	c.(121-123)CAA>CAC	p.Q41H		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	41							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTGCTGCCCAAGCTGTTACCA	0.502													13	44					0	0	0.020292	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417482	150417482	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:150417482G>A	uc003whq.2	+	3	477	c.390G>A	c.(388-390)CAG>CAA	p.Q130Q	GIMAP1_uc003whp.2_Silent_p.Q138Q	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	130	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGACCAGCAGGCGGTGAGGC	0.657													19	43					0	0	0.006122	0	0
GIMAP5	55340	broad.mit.edu	37	7	150440017	150440017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:150440017G>A	uc003whr.1	+	3	1142	c.790G>A	c.(790-792)GAG>AAG	p.E264K	GIMAP5_uc010lpu.2_Missense_Mutation_p.E122K	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	264	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGGGAGAACGAGAGTAACTG	0.473													18	37					0	0	0.010504	0	0
MLL3	58508	broad.mit.edu	37	7	151841956	151841956	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr7:151841956A>C	uc003wla.2	-	55	14404	c.14185T>G	c.(14185-14187)TTA>GTA	p.L4729V	MLL3_uc003wkz.2_Missense_Mutation_p.L3843V|MLL3_uc003wkx.2_Missense_Mutation_p.L887V|MLL3_uc003wky.2_Missense_Mutation_p.L2289V	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4729					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GTGCTGTTTAAGGTGTGAGGC	0.423			N		medulloblastoma								10	27					0	0	0.008291	0	0
XKR6	286046	broad.mit.edu	37	8	10756279	10756279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:10756279G>A	uc003wtk.1	-	3	1136	c.1109C>T	c.(1108-1110)TCC>TTC	p.S370F		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	370						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		GATCACTCGGGATGAGATGGT	0.537													35	85					0	0	0.019004	0	0
NAT2	10	broad.mit.edu	37	8	18257576	18257576	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:18257576G>A	uc003wyw.1	+	2	170	c.63G>A	c.(61-63)TTG>TTA	p.L21L		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	21					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		AATTGGACTTGGAAACATTAA	0.398									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				39	83					0	0	0.021022	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23058222	23058222	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:23058222G>A	uc003xda.2	-	5	746	c.681C>T	c.(679-681)ATC>ATT	p.I227I		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	227	TNFR-Cys 3.|Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		GGACACACTCGATGTCACTCC	0.587													34	110					0	0	0.005524	0	0
UNC5D	137970	broad.mit.edu	37	8	35453116	35453116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:35453116C>T	uc003xjr.1	+	4	839	c.511C>T	c.(511-513)CCC>TCC	p.P171S	UNC5D_uc003xjs.1_Missense_Mutation_p.P166S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	171	Extracellular (Potential).|Ig-like C2-type.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		AAGGGAAGTTCCCATTGAAGG	0.493													31	97					0	0	0.017118	0	0
GPR124	25960	broad.mit.edu	37	8	37692876	37692876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:37692876C>T	uc003xkj.2	+	12	2156	c.1793C>T	c.(1792-1794)ACC>ATC	p.T598I	GPR124_uc010lvy.2_Intron	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	598	Extracellular (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			CGCTGCACCACCGGGAGGCCC	0.687													9	23					0	0	0.008291	0	0
PXDNL	137902	broad.mit.edu	37	8	52387578	52387578	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:52387578G>A	uc003xqu.3	-	7	749	c.648C>T	c.(646-648)CTC>CTT	p.L216L		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	216	LRRCT.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CACGCCCATGGAGTCTCCTGG	0.483													5	10					0	0	0.014758	0	0
PXDNL	137902	broad.mit.edu	37	8	52567284	52567284	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:52567284C>T	uc003xqu.3	-	2	302	c.201G>A	c.(199-201)GGG>GGA	p.G67G		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	67	LRR 1.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TGAAGGCGCTCCCTGGAATTT	0.373													16	35					0	0	0.004990	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228600	57228600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:57228600C>T	uc003xsy.1	-	2	945	c.307G>A	c.(307-309)GAA>AAA	p.E103K	SDR16C5_uc010lyk.1_Missense_Mutation_p.E103K|SDR16C5_uc010lyl.1_Missense_Mutation_p.E103K	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	103					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TACACTCCTTCCTTTTGGCTG	0.448													25	111					0	0	0.007291	0	0
FAM110B	90362	broad.mit.edu	37	8	59058929	59058929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:59058929G>A	uc003xtj.1	+	5	1020	c.140G>A	c.(139-141)AGG>AAG	p.R47K		NM_147189	NP_671722	Q8TC76	F110B_HUMAN	hypothetical protein LOC90362	47						microtubule organizing center|mitochondrion|nucleus				large_intestine(1)	1		all_epithelial(80;0.025)|all_lung(136;0.0274)|Lung NSC(129;0.0355)				AACCCCAAGAGGCTCAGCGCC	0.672													10	24					0	0	0.008291	0	0
PREX2	80243	broad.mit.edu	37	8	68965427	68965427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:68965427G>A	uc003xxv.1	+	9	1066	c.1039G>A	c.(1039-1041)GAA>AAA	p.E347K	PREX2_uc003xxu.1_Missense_Mutation_p.E347K|PREX2_uc011lez.1_Missense_Mutation_p.E282K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	347	PH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AAAAACACCTGAAGAGAAGCA	0.388													17	40					0	0	0.004990	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70744139	70744139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:70744139C>T	uc003xyl.2	-	2	1477	c.770G>A	c.(769-771)GGA>GAA	p.G257E	SLCO5A1_uc010lzb.2_Missense_Mutation_p.G257E|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Missense_Mutation_p.G257E|SLCO5A1_uc010lzc.2_Missense_Mutation_p.G257E	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	257	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			GTGATTATTTCCTCCCGAGTC	0.547													20	39					0	0	0.014323	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768199	77768199	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:77768199G>A	uc003yav.2	+	10	9294	c.8907G>A	c.(8905-8907)GTG>GTA	p.V2969V	ZFHX4_uc003yau.1_Silent_p.V3014V|ZFHX4_uc003yaw.1_Silent_p.V2969V	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2969	C2H2-type 18.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TCTGCGGGGTGAAGTACTCTG	0.478										HNSCC(33;0.089)			12	36					0	0	0.016723	0	0
MRPS28	28957	broad.mit.edu	37	8	80831226	80831226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:80831226G>A	uc003ybp.2	-	3	576	c.553C>T	c.(553-555)CAT>TAT	p.H185Y	MRPS28_uc003ybo.2_Missense_Mutation_p.H94Y|TPD52_uc010lzr.2_RNA	NM_014018	NP_054737	Q9Y2Q9	RT28_HUMAN	mitochondrial ribosomal protein S28	185						mitochondrial small ribosomal subunit					0	Lung NSC(7;1.86e-06)|all_lung(9;6.91e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00769)|Epithelial(68;0.0208)|all cancers(69;0.0805)			TATTTTTCATGATGTTCTTCT	0.363													30	55					0	0	0.019004	0	0
CA1	759	broad.mit.edu	37	8	86244781	86244781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:86244781C>T	uc003ydh.2	-	7	651	c.451G>A	c.(451-453)GTT>ATT	p.V151I	CA13_uc003ydf.1_Intron|CA1_uc010mae.1_Missense_Mutation_p.V151I|CA1_uc003ydi.2_Missense_Mutation_p.V151I	NM_001738	NP_001729	P00915	CAH1_HUMAN	carbonic anhydrase I	151					one-carbon metabolic process	Golgi apparatus	carbonate dehydratase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(136;4.89e-06)			Acetazolamide(DB00819)|Amlodipine(DB00381)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dichlorphenamide(DB01144)|Ethinamate(DB01031)|Ethoxzolamide(DB00311)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Levetiracetam(DB01202)|Methazolamide(DB00703)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)|Verapamil(DB00661)|Zonisamide(DB00909)	GCCTCACCAACCTGGAGATTT	0.328													8	33					0	0	0.006214	0	0
DECR1	1666	broad.mit.edu	37	8	91057137	91057137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:91057137C>T	uc003yek.1	+	8	940	c.799C>T	c.(799-801)CCC>TCC	p.P267S	DECR1_uc011lgc.1_Missense_Mutation_p.P258S|DECR1_uc011lgd.1_RNA	NM_001359	NP_001350	Q16698	DECR_HUMAN	2,4-dienoyl CoA reductase 1 precursor	267					fatty acid beta-oxidation|protein homotetramerization	mitochondrial matrix|nucleus|plasma membrane	2,4-dienoyl-CoA reductase (NADPH) activity|NADPH binding|oxidoreductase activity, acting on NADH or NADPH				0			BRCA - Breast invasive adenocarcinoma(11;0.00953)			TGGCAGAATTCCCTGTGGTCG	0.423													30	95					0	0	0.008361	0	0
CDH17	1015	broad.mit.edu	37	8	95158288	95158288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:95158288G>A	uc003ygh.2	-	15	2160	c.2035C>T	c.(2035-2037)CCC>TCC	p.P679S	CDH17_uc011lgo.1_Missense_Mutation_p.P465S|CDH17_uc011lgp.1_Missense_Mutation_p.P679S	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	679	Cadherin 7.|Extracellular (Potential).					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			GCACTGAGGGGATGGCAGAAG	0.502													11	36					0	0	0.008291	0	0
KCNS2	3788	broad.mit.edu	37	8	99441498	99441498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:99441498G>A	uc003yin.2	+	2	1641	c.1291G>A	c.(1291-1293)GAC>AAC	p.D431N		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	431	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			GCGCAGCTGTGACTTTGGAGA	0.488													54	86					0	0	0.014410	0	0
TRHR	7201	broad.mit.edu	37	8	110131511	110131511	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:110131511A>G	uc003ymz.3	+	2	1040	c.1024A>G	c.(1024-1026)ACA>GCA	p.T342A		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	342	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			GCAGAAGCCAACAGAGAAACC	0.463													33	88					0	0	0.010818	0	0
ADCY8	114	broad.mit.edu	37	8	131812690	131812690	+	Silent	SNP	G	A	A	rs142352284		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:131812690G>A	uc003ytd.3	-	15	3298	c.3042C>T	c.(3040-3042)ATC>ATT	p.I1014I	ADCY8_uc010mds.2_Silent_p.I883I	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1014	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGTCAGCAATGATCTCATTGA	0.428										HNSCC(32;0.087)			25	76					0	0	0.021523	0	0
OC90	729330	broad.mit.edu	37	8	133036886	133036886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:133036886C>T	uc003ytg.2	-	13	1276	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	OC90_uc011lix.1_Missense_Mutation_p.E426K	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	442					lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			AGGCTGTCTTCACAGGCTGCT	0.647													7	16					0	0	0.003080	0	0
CYP11B2	1585	broad.mit.edu	37	8	143994858	143994858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:143994858G>A	uc003yxk.1	-	6	967	c.964C>T	c.(964-966)CCC>TCC	p.P322S		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	322					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	ATCAGCAAGGGAAACGCTGTC	0.632									Familial_Hyperaldosteronism_type_I				22	63					0	0	0.016522	0	0
SCRIB	23513	broad.mit.edu	37	8	144873582	144873582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:144873582G>A	uc003yzp.1	-	35	4731	c.4724C>T	c.(4723-4725)TCC>TTC	p.S1575F	SCRIB_uc003yzn.1_Missense_Mutation_p.S308F|SCRIB_uc003yzo.1_Missense_Mutation_p.S1600F	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	1575					activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			TGGTTCCAGGGACCTCAACTC	0.672													4	12					0	0	0.009096	0	0
SCRIB	23513	broad.mit.edu	37	8	144895852	144895852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:144895852G>A	uc003yzp.1	-	4	408	c.401C>T	c.(400-402)GCC>GTC	p.A134V	SCRIB_uc003yzo.1_Missense_Mutation_p.A134V|MIR937_hsa-mir-937|MI0005759_5'Flank	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	134	Sufficient for targeting to adherens junction and to inhibit cell proliferation.|LRR 5.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			ATCATTCAGGGCCAGGTGAGC	0.642													17	30					0	0	0.007413	0	0
EPPK1	83481	broad.mit.edu	37	8	144942134	144942134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:144942134C>T	uc003zaa.1	-	1	5301	c.5288G>A	c.(5287-5289)GGA>GAA	p.G1763E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1763						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GTAGTTTTCTCCTTTCTTTAT	0.537													16	42					0	0	0.008871	0	0
EPPK1	83481	broad.mit.edu	37	8	144944041	144944041	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr8:144944041C>T	uc003zaa.1	-	1	3394	c.3381G>A	c.(3379-3381)CAG>CAA	p.Q1127Q		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1127						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCCTCTGGACCTGCTCCTCGG	0.672													6	7					0	0	0.003080	0	0
GLDC	2731	broad.mit.edu	37	9	6620207	6620207	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:6620207C>T	uc003zkc.2	-	3	640	c.447G>A	c.(445-447)CGG>CGA	p.R149R		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	149					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CCAGTAAGTTCCGCAAAATCG	0.443													19	25					0	0	0.008871	0	0
IFNW1	3467	broad.mit.edu	37	9	21141465	21141465	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:21141465C>T	uc003zol.1	-	1	680	c.105G>A	c.(103-105)AGG>AGA	p.R35R		NM_002177	NP_002168	P05000	IFNW1_HUMAN	interferon, omega 1 precursor	35					cell cycle arrest|defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0				GBM - Glioblastoma multiforme(5;2.35e-185)|Lung(24;2.24e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CCAAGGTGTTCCTGCTAAGTA	0.527													43	63					0	0	0.014410	0	0
PAX5	5079	broad.mit.edu	37	9	36882077	36882077	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:36882077G>A	uc003zzo.1	-	8	1384	c.936C>T	c.(934-936)CTC>CTT	p.L312L	PAX5_uc011lpt.1_Silent_p.L108L|PAX5_uc011lpu.1_Intron|PAX5_uc011lpv.1_Intron|PAX5_uc011lpw.1_Intron|PAX5_uc011lpx.1_Intron|PAX5_uc011lpy.1_Intron|PAX5_uc010mls.1_Intron|PAX5_uc011lpz.1_Silent_p.L269L|PAX5_uc011lqa.1_Silent_p.L204L|PAX5_uc010mlq.1_RNA|PAX5_uc011lqb.1_RNA|PAX5_uc010mlo.1_Intron|PAX5_uc010mlp.1_Silent_p.L312L|PAX5_uc011lqc.1_Silent_p.L269L|PAX5_uc010mlr.1_Intron	NM_016734	NP_057953	Q02548	PAX5_HUMAN	paired box 5	312					cell differentiation|humoral immune response|nervous system development|organ morphogenesis|spermatogenesis|transcription from RNA polymerase II promoter	nucleus	DNA binding	p.?(22)	PAX5/JAK2(18)	haematopoietic_and_lymphoid_tissue(142)|lung(3)|central_nervous_system(2)	147		all_cancers(2;3.46e-10)|Acute lymphoblastic leukemia(2;7.09e-56)|all_hematologic(2;6.65e-44)		GBM - Glioblastoma multiforme(29;0.0108)		GGTACCCGGGGAGGGTCGTGC	0.637			T|Mis|D|F|S	IGH@|ETV6|PML|FOXP1|ZNF521|ELN	NHL|ALL|B-ALL								8	11					0	0	0.006214	0	0
FAM75A6	389730	broad.mit.edu	37	9	43625310	43625310	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:43625310G>T	uc011lrb.1	-	4	3406	c.3377C>A	c.(3376-3378)ACT>AAT	p.T1126N		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	1126						integral to membrane					0						AAGTTGAGGAGTCCTCAATCC	0.468													60	121					1.52589e-26	1.6783e-26	0.014410	1	0
TRPM6	140803	broad.mit.edu	37	9	77407591	77407591	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:77407591C>T	uc004ajl.1	-	19	2725	c.2487G>A	c.(2485-2487)AGG>AGA	p.R829R	TRPM6_uc004ajk.1_Silent_p.R824R|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	829	Extracellular (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CATAGACTTTCCTGGTCCACG	0.398													6	30					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	9	78973689	78973689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:78973689G>A	uc004akc.1	+	10	1910	c.1690G>A	c.(1690-1692)GAT>AAT	p.D564N						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		TGAGTACAGGGATCGGGACTA	0.473													54	156					0	0	0.014410	0	0
RASEF	158158	broad.mit.edu	37	9	85627360	85627360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:85627360C>T	uc004amo.1	-	5	1093	c.832G>A	c.(832-834)GAT>AAT	p.D278N		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	278	Potential.				protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						ATTGATAAATCATAAATTTGT	0.363													6	22					0	0	0.001984	0	0
FAM75C1	441452	broad.mit.edu	37	9	90537259	90537259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:90537259C>T	uc010mqi.2	+	4	2466	c.2437C>T	c.(2437-2439)CCC>TCC	p.P813S	FAM75C1_uc004apq.3_Missense_Mutation_p.P796S	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						ACCCACAGTCCCCTTGGGAAC	0.562													22	66					0	0	0.010818	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375832	93375832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:93375832G>A	uc004aqx.1	-	2	389	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	93					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						CTCCTCCAAGGACTGTCGGCT	0.582													33	83					0	0	0.010818	0	0
SYK	6850	broad.mit.edu	37	9	93637110	93637110	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:93637110A>G	uc004aqz.2	+	9	1365	c.1160A>G	c.(1159-1161)AAG>AGG	p.K387R	SYK_uc004ara.2_Missense_Mutation_p.K364R|SYK_uc004arb.2_Missense_Mutation_p.K364R|SYK_uc004arc.2_Missense_Mutation_p.K387R|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	387	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						ACTGTGAAAAAGGGCTACTAC	0.473			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								3	154					0	0	0.004672	0	0
WNK2	65268	broad.mit.edu	37	9	96031005	96031005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:96031005C>T	uc004ati.1	+	18	4010	c.4010C>T	c.(4009-4011)TCC>TTC	p.S1337F	WNK2_uc011lud.1_Missense_Mutation_p.S1337F|WNK2_uc004atj.2_Missense_Mutation_p.S1337F|WNK2_uc004atk.2_Missense_Mutation_p.S974F	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1337					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CCTCTAAGCTCCCTGCCGCCA	0.627													9	22					0	0	0.008291	0	0
C9orf3	84909	broad.mit.edu	37	9	97535328	97535328	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:97535328T>C	uc004ava.2	+	2	977	c.842T>C	c.(841-843)CTT>CCT	p.L281P	C9orf3_uc011lui.1_RNA|C9orf3_uc004aux.1_Missense_Mutation_p.L281P|C9orf3_uc004auy.2_Missense_Mutation_p.L281P|C9orf3_uc004auz.1_Missense_Mutation_p.L281P	NM_032823	NP_116212	Q8N6M6	AMPO_HUMAN	aminopeptidase O	281					leukotriene biosynthetic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.000275)		AACAGGGCCCTTTTTCCATGC	0.463													3	108					0	0	0.004672	0	0
HSD17B3	3293	broad.mit.edu	37	9	99013703	99013703	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:99013703G>A	uc004awa.1	-	5	498	c.450C>T	c.(448-450)ATC>ATT	p.I150I	HSD17B3_uc010msc.1_Silent_p.I150I	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	150					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	AGTCTACCTGGATTTCATCCG	0.488													12	20					0	0	0.003163	0	0
LOC441455	441455	broad.mit.edu	37	9	99488637	99488637	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:99488637G>A	uc011luo.1	+	1		c.535G>A				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						GTGCCTTCCTGCACTGAAGCA	0.443													9	29					0	0	0.004482	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432834	104432834	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:104432834G>A	uc004bbp.1	-	3	2461	c.1860C>T	c.(1858-1860)CTC>CTT	p.L620L	GRIN3A_uc004bbq.1_Silent_p.L620L	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	620	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TCCCTCTCAGGAGATCACCCA	0.498													27	44					0	0	0.006320	0	0
OR13C5	138799	broad.mit.edu	37	9	107360783	107360783	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:107360783C>T	uc011lvp.1	-	1	912	c.912G>A	c.(910-912)AAG>AAA	p.K304K		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TTACTGCCTCCTTCACATCCT	0.333													15	42					0	0	0.003163	0	0
OR13C9	286362	broad.mit.edu	37	9	107379675	107379675	+	Missense_Mutation	SNP	C	T	T	rs143297558		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:107379675C>T	uc011lvr.1	-	1	811	c.811G>A	c.(811-813)GAT>AAT	p.D271N		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCCAAGTCATCTGAATTAAGT	0.398													29	76					0	0	0.009535	0	0
ZNF483	158399	broad.mit.edu	37	9	114296142	114296142	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:114296142C>T	uc004bff.2	+	4	849	c.625C>T	c.(625-627)CTG>TTG	p.L209L	ZNF483_uc011lwq.1_Silent_p.L209L|ZNF483_uc004bfg.2_Silent_p.L209L	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	209	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						CCTAGAATTTCTGGGTAAAGA	0.403													15	62					0	0	0.006122	0	0
ZNF883	169834	broad.mit.edu	37	9	115760190	115760190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:115760190C>T	uc011lwy.1	-	5	1589	c.350G>A	c.(349-351)AGA>AAA	p.R117K		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	117	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTATGGATTCTCTCATGATT	0.383													14	32					0	0	0.016723	0	0
TLR4	7099	broad.mit.edu	37	9	120466753	120466753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:120466753G>A	uc004bjz.2	+	1	294	c.3G>A	c.(1-3)ATG>ATA	p.M1I	TLR4_uc004bka.2_5'UTR|TLR4_uc004bkb.2_5'UTR	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	1					activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						ATGCCAGGATGATGTCTGCCT	0.602													10	32					0	0	0.008291	0	0
DAB2IP	153090	broad.mit.edu	37	9	124535728	124535728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:124535728C>T	uc004bln.2	+	12	2906	c.2837C>T	c.(2836-2838)TCC>TTC	p.S946F	DAB2IP_uc004blo.2_Missense_Mutation_p.S850F|DAB2IP_uc004blp.2_Missense_Mutation_p.S379F	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	974					activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						TCCTCTTCCTCCAAGGGGGAC	0.657													7	9					0	0	0.003080	0	0
OR1N2	138882	broad.mit.edu	37	9	125315488	125315488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:125315488G>A	uc011lyx.1	+	1	40	c.40G>A	c.(40-42)GGG>AGG	p.G14R		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						CGAACTACAAGGGATGGGAAA	0.363													27	69					0	0	0.004656	0	0
OR1B1	347169	broad.mit.edu	37	9	125390894	125390894	+	Silent	SNP	G	C	C			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:125390894G>C	uc011lyz.1	-	1	921	c.921C>G	c.(919-921)CTC>CTG	p.L307L		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCAGCCTGCAGAGTGCACCCT	0.473													24	33					0	0	0.021523	0	0
SPTAN1	6709	broad.mit.edu	37	9	131379952	131379952	+	Silent	SNP	C	T	T	rs146418243	by1000genomes	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:131379952C>T	uc004bvl.3	+	41	5489	c.5376C>T	c.(5374-5376)TAC>TAT	p.Y1792Y	SPTAN1_uc004bvm.3_Silent_p.Y1797Y|SPTAN1_uc004bvn.3_Silent_p.Y1772Y	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	1792	Spectrin 19.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						CAGAGGACTACGGCCGGGACC	0.587													23	49					0	0	0.014323	0	0
SARDH	1757	broad.mit.edu	37	9	136597638	136597638	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:136597638C>T	uc004cep.3	-	3	551	c.417G>A	c.(415-417)GAG>GAA	p.E139E	SARDH_uc004ceo.2_Silent_p.E139E|SARDH_uc011mdn.1_Silent_p.E139E|SARDH_uc011mdo.1_5'UTR	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	139					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GTCCCGTCTCCTCCTCCAGCT	0.672													40	136					0	0	0.009718	0	0
FCN2	2220	broad.mit.edu	37	9	137776591	137776591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:137776591C>T	uc004cfg.1	+	4	284	c.274C>T	c.(274-276)CCT>TCT	p.P92S	FCN2_uc004cfh.1_Missense_Mutation_p.P54S	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	92	Collagen-like.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		AACAGGAGCACCTGGGGAGCC	0.617													8	32					0	0	0.006214	0	0
C9orf163	158055	broad.mit.edu	37	9	139379493	139379493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:139379493C>T	uc004chy.2	+	1	1547	c.593C>T	c.(592-594)TCC>TTC	p.S198F	SEC16A_uc004chx.2_5'Flank|SEC16A_uc010nbo.1_5'Flank	NM_152571	NP_689784	Q8N9P6	CI163_HUMAN	hypothetical protein LOC158055	198							protein binding				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;4.36e-06)|Epithelial(140;5.65e-06)		ACCCTGTGGTCCCACCGGGGT	0.607											OREG0019617	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	9					0	0	0.009096	0	0
CACNA1B	774	broad.mit.edu	37	9	141016070	141016070	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr9:141016070C>T	uc004cog.2	+	46	6784	c.6639C>T	c.(6637-6639)TTC>TTT	p.F2213F	CACNA1B_uc004coi.2_Silent_p.F1425F	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	2213	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CCATCCACTTCGCCGGGGCTC	0.706													9	26					0	0	0.006214	0	0
PPP2R3B	28227	broad.mit.edu	37	X	299624	299624	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:299624G>A	uc004cpg.2	-	11	1560	c.1359C>T	c.(1357-1359)ATC>ATT	p.I453I	PPP2R3B_uc004cpf.2_Silent_p.I54I	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	453					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCTGCAGCGTGATCTTCCCTG	0.607													38	52					0	0	0.006999	0	0
MXRA5	25878	broad.mit.edu	37	X	3241875	3241875	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:3241875C>T	uc004crg.3	-	5	2008	c.1851G>A	c.(1849-1851)AGG>AGA	p.R617R		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	617	Ig-like C2-type 2.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CATTAATTATCCTTCTGTTTG	0.443													17	20					0	0	0.006122	0	0
PHKA2	5256	broad.mit.edu	37	X	18936813	18936813	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:18936813C>A	uc004cyv.3	-	19	2553	c.2123G>T	c.(2122-2124)GGT>GTT	p.G708V	PHKA2_uc004cyu.3_Missense_Mutation_p.G6V	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	708					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					AACTTCCAAACCCTTTGCTTT	0.333													21	23					2.98393e-07	3.24763e-07	0.016522	1	0
CXorf21	80231	broad.mit.edu	37	X	30577862	30577862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:30577862G>A	uc004dcg.1	-	3	887	c.611C>T	c.(610-612)CCT>CTT	p.P204L		NM_025159	NP_079435	Q9HAI6	CX021_HUMAN	hypothetical protein LOC80231	204										ovary(1)	1						ATTAGAAATAGGATTCTGCAT	0.423													34	51					0	0	0.021022	0	0
FAM47B	170062	broad.mit.edu	37	X	34961104	34961104	+	Silent	SNP	G	A	A	rs79825675	byFrequency	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:34961104G>A	uc004ddi.1	+	1	174	c.156G>A	c.(154-156)ACG>ACA	p.T52T		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	52										ovary(3)|breast(1)	4						TATTTGTGACGGAGGGCATGG	0.552													14	28					0	0	0.004007	0	0
FAM47C	442444	broad.mit.edu	37	X	37029029	37029029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:37029029C>T	uc004ddl.1	+	1	2560	c.2546C>T	c.(2545-2547)TCG>TTG	p.S849L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	849										ovary(3)	3						AGACACACATCGAGAAAACTC	0.468													39	61					0	0	0.008740	0	0
CXorf36	79742	broad.mit.edu	37	X	45010966	45010966	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:45010966C>A	uc004dgg.2	-	5	1308	c.1233G>T	c.(1231-1233)AGG>AGT	p.R411S		NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	411						extracellular region				lung(1)	1						TTCTCAGGGGCCTCAAGATGT	0.532													35	52					1.22674e-20	1.34611e-20	0.008740	1	0
USP11	8237	broad.mit.edu	37	X	47103918	47103918	+	Silent	SNP	C	T	T	rs137968498		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:47103918C>T	uc004dhp.2	+	14	1941	c.1941C>T	c.(1939-1941)AAC>AAT	p.N647N	USP11_uc004dhq.2_Silent_p.N374N	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	647					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						CCAAACCCAACTCAGATGATG	0.547													17	23					0	0	0.010504	0	0
SSX6	280657	broad.mit.edu	37	X	47978993	47978993	+	Missense_Mutation	SNP	G	A	A	rs77470044	byFrequency	TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:47978993G>A	uc004dix.1	+	7	666	c.544G>A	c.(544-546)GAC>AAC	p.D182N		NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						AGAGATCAGCGACCCTGAGGA	0.498													155	167					0	0	0.014410	0	0
VSIG4	11326	broad.mit.edu	37	X	65259822	65259822	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:65259822G>A	uc004dwh.2	-	1	146	c.19C>T	c.(19-21)CTG>TTG	p.L7L	VSIG4_uc004dwi.2_Silent_p.L7L|VSIG4_uc010nkq.1_Silent_p.L7L|VSIG4_uc004dwj.2_Silent_p.L7L|VSIG4_uc011moy.1_Silent_p.L7L|VSIG4_uc004dwk.2_Silent_p.L7L	NM_007268	NP_009199	Q9Y279	VSIG4_HUMAN	V-set and immunoglobulin domain containing 4	7					complement activation, alternative pathway	integral to membrane	protein binding				0						AGGAGTAGCAGGCCCAGTAAG	0.562													20	14					0	0	0.004656	0	0
POF1B	79983	broad.mit.edu	37	X	84634306	84634306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:84634306C>T	uc004eer.2	-	2	300	c.154G>A	c.(154-156)GTG>ATG	p.V52M	POF1B_uc004ees.2_Missense_Mutation_p.V52M	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	52							actin binding				0						TAGGTCCTCACTCGCTCATAC	0.567													10	17					0	0	0.008291	0	0
KLHL4	56062	broad.mit.edu	37	X	86887330	86887330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:86887330G>A	uc004efb.2	+	7	1627	c.1445G>A	c.(1444-1446)GGA>GAA	p.G482E	KLHL4_uc004efa.2_Missense_Mutation_p.G482E	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	482	Kelch 2.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TATGTCGTGGGAGGAAGAGAC	0.448													12	17					0	0	0.010729	0	0
KLHL4	56062	broad.mit.edu	37	X	86887333	86887333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:86887333G>A	uc004efb.2	+	7	1630	c.1448G>A	c.(1447-1449)GGA>GAA	p.G483E	KLHL4_uc004efa.2_Missense_Mutation_p.G483E	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	483	Kelch 2.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GTCGTGGGAGGAAGAGACGGT	0.448													14	17					0	0	0.016723	0	0
NXF3	56000	broad.mit.edu	37	X	102334395	102334395	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:102334395C>T	uc004eju.2	-	15	1298	c.1227G>A	c.(1225-1227)CGG>CGA	p.R409R	NXF3_uc010noi.1_Silent_p.R259R	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	409	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GCAGCTCCCCCCGAAGGTCTG	0.542													41	50					0	0	0.006999	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104512202	104512202	+	Silent	SNP	A	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:104512202A>T	uc004elz.1	+	5	1431	c.675A>T	c.(673-675)CGA>CGT	p.R225R		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	225	Ig-like C2-type 2.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						TTGTAAGACGAACAACTGAAT	0.328													11	22					0	0	0.008291	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106093514	106093514	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:106093514T>G	uc004emo.2	+	12	2262	c.2097T>G	c.(2095-2097)GAT>GAG	p.D699E	MORC4_uc004emp.3_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	699						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GTAAAGATGATGCTGAAGCTG	0.259													24	28					0	0	0.021523	0	0
COL4A5	1287	broad.mit.edu	37	X	107821309	107821309	+	Missense_Mutation	SNP	G	A	A	rs104886074		TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:107821309G>A	uc004enz.1	+	12	849	c.647G>A	c.(646-648)GGG>GAG	p.G216E	COL4A5_uc011mso.1_Missense_Mutation_p.G216E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	216	Triple-helical region.		G -> R (in APSX; juvenile type).		axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TCTCTCCAGGGGAATATGGGC	0.368									Alport_syndrome_with_Diffuse_Leiomyomatosis				16	16					0	0	0.003163	0	0
GRIA3	2892	broad.mit.edu	37	X	122459949	122459949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:122459949G>A	uc004etq.3	+	5	874	c.581G>A	c.(580-582)GGA>GAA	p.G194E	GRIA3_uc004etr.3_Missense_Mutation_p.G194E|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.G178E	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	194	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	AGGTCTGTGGGAAACATAAAG	0.443													10	18					0	0	0.006214	0	0
ODZ1	10178	broad.mit.edu	37	X	123517662	123517662	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:123517662G>A	uc004euj.2	-	29	7162	c.7098C>T	c.(7096-7098)TTC>TTT	p.F2366F	ODZ1_uc011muj.1_Silent_p.F2372F|ODZ1_uc010nqy.2_Silent_p.F2373F	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2366	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ATTTAGTAAGGAAATCATAGA	0.408													27	30					0	0	0.006320	0	0
GPC4	2239	broad.mit.edu	37	X	132439837	132439837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:132439837C>T	uc004exc.1	-	6	1330	c.1118G>A	c.(1117-1119)CGC>CAC	p.R373H	GPC4_uc011mvg.1_Missense_Mutation_p.R303H	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	373					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					TGTGGTTGGGCGTTCCTCGGG	0.537													106	132					0	0	0.014410	0	0
MCF2	4168	broad.mit.edu	37	X	138670580	138670580	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:138670580C>T	uc004fau.2	-	21	2682	c.2388G>A	c.(2386-2388)GTG>GTA	p.V796V	MCF2_uc004fav.2_Silent_p.V812V|MCF2_uc011mwl.1_Silent_p.V773V|MCF2_uc010nsh.1_Silent_p.V796V|MCF2_uc011mwm.1_Silent_p.V757V|MCF2_uc011mwn.1_Silent_p.V941V|MCF2_uc004faw.2_Silent_p.V856V|MCF2_uc011mwo.1_Silent_p.V872V	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	796	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					ACGTCATCTTCACATCTACAT	0.333													17	28					0	0	0.007413	0	0
MAGEC3	139081	broad.mit.edu	37	X	140985455	140985455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:140985455C>T	uc011mwp.1	+	8	1769	c.1769C>T	c.(1768-1770)TCC>TTC	p.S590F	MAGEC3_uc004fbs.2_Silent_p.I339I|MAGEC3_uc010nsj.2_Silent_p.I339I	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	590	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GAGTTTTTATCCAAGCTATCC	0.478													36	44					0	0	0.021022	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795495	142795495	+	Silent	SNP	C	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:142795495C>T	uc004fbz.2	-	2	937	c.183G>A	c.(181-183)ACG>ACA	p.T61T		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	61										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AATTTATTTTCGTATGCTTCC	0.443													59	57					0	0	0.014410	0	0
CNGA2	1260	broad.mit.edu	37	X	150906979	150906979	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:150906979G>A	uc004fey.1	+	2	248	c.24G>A	c.(22-24)GTG>GTA	p.V8V		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	8	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAATGGTGTGAAGAGCTCCC	0.522													46	81					0	0	0.014410	0	0
CNGA2	1260	broad.mit.edu	37	X	150906982	150906982	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:150906982G>A	uc004fey.1	+	2	251	c.27G>A	c.(25-27)AAG>AAA	p.K9K		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	9	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ATGGTGTGAAGAGCTCCCCAG	0.517													45	81					0	0	0.014410	0	0
MAGEA12	4111	broad.mit.edu	37	X	151896121	151896121	+	RNA	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:151896121G>A	uc004fgb.2	-	4		c.646C>T						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12, mRNA (cDNA clone MGC:4914 IMAGE:3450217), complete cds.											skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CCTTGCCCGGGAATTACTGGC	0.493													3	7					0	0	0.004672	0	0
PDZD4	57595	broad.mit.edu	37	X	153073826	153073826	+	Silent	SNP	G	A	A			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chrX:153073826G>A	uc004fiz.1	-	2	535	c.285C>T	c.(283-285)GTC>GTT	p.V95V	PDZD4_uc004fiy.1_Silent_p.V14V|PDZD4_uc004fix.2_5'UTR|PDZD4_uc004fja.1_Silent_p.V95V|PDZD4_uc011mze.1_Intron	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	95						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCTCCAGGATGACCATGGGCG	0.667													15	24					0	0	0.004007	0	0
LOC494141	494141	broad.mit.edu	37	11	18231788	18231789	+	RNA	INS	-	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr11:18231788_18231789insT	uc009yhh.2	+	2		c.812_813insT			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						TCAGCAATGTCTTTTTTTTTTC	0.436													7	60	---	---	---	---					
HIST1H2AA	221613	broad.mit.edu	37	6	25726526	25726527	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2GU-06A-11D-A196-08	TCGA-EE-A2GU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	49f063c5-bd61-4143-898f-891f9d9bc429	c3feacc2-5a26-4bb2-a312-8b2ee53ccad1	g.chr6:25726526_25726527insT	uc003nfc.2	-	1	264_265	c.229_230insA	c.(229-231)ACTfs	p.T77fs	HIST1H2BA_uc003nfd.2_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	77					nucleosome assembly	nucleosome|nucleus	DNA binding				0						AATAATGCGAGTTTTTTTGTTA	0.545													26	113	---	---	---	---					
