Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DVL1	1855	broad.mit.edu	37	1	1271705	1271705	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:1271705C>T	uc001aer.3	-	15	1877	c.1830G>A	c.(1828-1830)TCG>TCA	p.S610S	DVL1_uc002quu.2_Silent_p.S352S|DVL1_uc009vka.2_Silent_p.S293S|DVL1_uc001aeu.1_3'UTR	NM_004421	NP_004412	O14640	DVL1_HUMAN	dishevelled 1	635					canonical Wnt receptor signaling pathway|dendrite morphogenesis|intracellular signal transduction|negative regulation of protein binding|negative regulation of protein kinase activity|neural tube development|neuromuscular junction development|neurotransmitter secretion|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|receptor clustering|transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, planar cell polarity pathway	cytoplasmic membrane-bounded vesicle|cytosol|plasma membrane|synapse|synaptosome	frizzled binding|identical protein binding|protein kinase binding|signal transducer activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GGGCGGTAGCCGAGGCCTGAC	0.746													9	12					0	0	0.058154	0	0
Unknown	0	broad.mit.edu	37	1	1854151	1854151	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:1854151G>A	uc001aik.2	-	10	1543	c.693C>T	c.(691-693)TTC>TTT	p.F231F	uc001ail.2_Silent_p.F231F					RecName: Full=Uncharacterized protein C1orf222;																		TGTCTATGCTGAACTCAACGG	0.622													23	38					0	0	0.099896	0	0
RER1	11079	broad.mit.edu	37	1	2332314	2332314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:2332314C>T	uc001aje.1	+	5	496	c.305C>T	c.(304-306)CCC>CTC	p.P102L	RER1_uc001ajf.1_Missense_Mutation_p.P102L	NM_007033	NP_008964	O15258	RER1_HUMAN	RER1 retention in endoplasmic reticulum 1	102					retrograde vesicle-mediated transport, Golgi to ER	integral to Golgi membrane					0	all_cancers(77;0.000247)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;5.35e-20)|all_lung(118;2.78e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.28e-37)|OV - Ovarian serous cystadenocarcinoma(86;8.29e-23)|GBM - Glioblastoma multiforme(42;4.71e-08)|Colorectal(212;4.73e-05)|COAD - Colon adenocarcinoma(227;0.00021)|Kidney(185;0.00116)|BRCA - Breast invasive adenocarcinoma(365;0.00459)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0182)|Lung(427;0.204)		CCTTCGCTACCCACCAAACAG	0.483													44	67					0	0	0.139131	0	0
NPHP4	261734	broad.mit.edu	37	1	6046249	6046249	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:6046249A>T	uc001alq.1	-	2	367	c.101T>A	c.(100-102)GTC>GAC	p.V34D	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_RNA|NPHP4_uc001alt.1_Intron	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	34					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		CCACTTGAGGACACACTGGAA	0.522													8	13					0	0	0.058154	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6529656	6529656	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:6529656G>A	uc001ano.1	-	18	2150	c.2049C>T	c.(2047-2049)ATC>ATT	p.I683I	PLEKHG5_uc001ann.1_Silent_p.I664I|PLEKHG5_uc001anq.1_Silent_p.I704I|PLEKHG5_uc001anp.1_Silent_p.I704I|PLEKHG5_uc001anj.1_Silent_p.I188I|PLEKHG5_uc009vma.1_Silent_p.I467I|PLEKHG5_uc010nzr.1_Silent_p.I696I|PLEKHG5_uc001ank.1_Silent_p.I627I|PLEKHG5_uc009vmb.1_Silent_p.I627I|PLEKHG5_uc001anl.1_Silent_p.I627I|PLEKHG5_uc001anm.1_Silent_p.I627I|PLEKHG5_uc001anr.1_5'Flank	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	683	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		GGGGTGGCCTGATGACCCTGG	0.607													25	41					0	0	0.083992	0	0
DHRS3	9249	broad.mit.edu	37	1	12628405	12628405	+	Silent	SNP	G	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:12628405G>C	uc001auc.2	-	6	1340	c.873C>G	c.(871-873)ACC>ACG	p.T291T	DHRS3_uc001aub.2_Silent_p.T206T	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	291					retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	TGCAGGTGTAGGTTCCTGAGA	0.527													63	68					0	0	0.139131	0	0
SPEN	23013	broad.mit.edu	37	1	16259360	16259360	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:16259360C>T	uc001axk.1	+	11	6829	c.6625C>T	c.(6625-6627)CAA>TAA	p.Q2209*	SPEN_uc010obp.1_Nonsense_Mutation_p.Q2168*	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2209	RID.|Interaction with MSX2 (By similarity).				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GCCTGCACACCAAGCAAGTGA	0.572													21	37					0	0	0.055883	0	0
MST1P2	11209	broad.mit.edu	37	1	16974549	16974549	+	RNA	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:16974549C>G	uc009vow.2	+	5		c.1359C>G			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GGGCTGAGTGCAGCGCCTGCT	0.692													4	37					0	0	0.029380	0	0
ACTL8	81569	broad.mit.edu	37	1	18152851	18152851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:18152851G>A	uc001bat.2	+	3	1154	c.938G>A	c.(937-939)AGG>AAG	p.R313K		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	313						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CGCCTGTTCAGGGAGCTGATG	0.617											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	42					0	0	0.117977	0	0
UBR4	23352	broad.mit.edu	37	1	19464561	19464561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:19464561C>T	uc001bbi.2	-	60	8850	c.8846G>A	c.(8845-8847)GGA>GAA	p.G2949E	UBR4_uc001bbk.1_Missense_Mutation_p.G596E	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	2949					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GGAGCCATCTCCCTCCTGGTG	0.478													15	20					0	0	0.119110	0	0
UBR4	23352	broad.mit.edu	37	1	19499520	19499520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:19499520G>A	uc001bbi.2	-	25	3363	c.3359C>T	c.(3358-3360)TCC>TTC	p.S1120F	UBR4_uc001bbm.1_Missense_Mutation_p.S331F	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	1120					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GGTGTAGATGGACTGCAGACT	0.438													19	35					0	0	0.069288	0	0
EPHB2	2048	broad.mit.edu	37	1	23107967	23107967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:23107967C>T	uc009vqj.1	+	2	260	c.115C>T	c.(115-117)CCT>TCT	p.P39S	EPHB2_uc001bge.2_Missense_Mutation_p.P39S|EPHB2_uc001bgf.2_Missense_Mutation_p.P39S|EPHB2_uc010odu.1_Missense_Mutation_p.P39S	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	39	Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GATGGTGCATCCTCCATCAGG	0.607									Hereditary_Prostate_Cancer				8	24					0	0	0.058154	0	0
HMGCL	3155	broad.mit.edu	37	1	24130967	24130967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:24130967G>A	uc001bib.2	-	8	843	c.799C>T	c.(799-801)CCC>TCC	p.P267S	HMGCL_uc010oec.1_Missense_Mutation_p.P196S|HMGCL_uc009vqr.2_Missense_Mutation_p.P128S|HMGCL_uc001bic.2_Missense_Mutation_p.P242S|HMGCL_uc009vqs.1_Missense_Mutation_p.P160S	NM_000191	NP_000182	P35914	HMGCL_HUMAN	3-hydroxy-3-methylglutaryl CoA lyase isoform 1	267					acetoacetic acid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA lyase activity|metal ion binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.0044)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.38e-24)|Colorectal(126;5.58e-08)|COAD - Colon adenocarcinoma(152;3.12e-06)|GBM - Glioblastoma multiforme(114;4.9e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000982)|KIRC - Kidney renal clear cell carcinoma(1967;0.0034)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0856)|LUSC - Lung squamous cell carcinoma(448;0.188)		TGTGCGTAGGGACAGCCTCCA	0.562													26	41					0	0	0.083992	0	0
MYOM3	127294	broad.mit.edu	37	1	24398477	24398477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:24398477G>A	uc001bin.3	-	24	3158	c.2995C>T	c.(2995-2997)CAT>TAT	p.H999Y	MYOM3_uc001bim.3_Missense_Mutation_p.H656Y|MYOM3_uc001bio.2_Missense_Mutation_p.H999Y	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	999										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CTGATCTCATGACTCAGCTTC	0.557													35	34					0	0	0.098360	0	0
PTPRU	10076	broad.mit.edu	37	1	29610486	29610486	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:29610486A>C	uc001bru.2	+	13	2287	c.2177A>C	c.(2176-2178)AAA>ACA	p.K726T	PTPRU_uc001brv.2_Missense_Mutation_p.K726T|PTPRU_uc001brw.2_Missense_Mutation_p.K726T|PTPRU_uc009vtq.2_Missense_Mutation_p.K726T|PTPRU_uc009vtr.2_Missense_Mutation_p.K726T	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	726	Extracellular (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		ATTGCCAGGAAAGGTAAGTCC	0.622													45	85					0	0	0.139131	0	0
MATN1	4146	broad.mit.edu	37	1	31194271	31194271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:31194271C>T	uc001brz.2	-	2	456	c.422G>A	c.(421-423)AGG>AAG	p.R141K	uc001bsb.1_RNA|MATN1_uc001bsa.1_5'Flank	NM_002379	NP_002370	P21941	MATN1_HUMAN	matrilin 1, cartilage matrix protein precursor	141	VWFA 1.				protein complex assembly	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			central_nervous_system(1)	1		Colorectal(325;0.00792)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)|Ovarian(437;0.0563)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-05)|COAD - Colon adenocarcinoma(152;0.000726)|STAD - Stomach adenocarcinoma(196;0.0183)|READ - Rectum adenocarcinoma(331;0.0649)		GTCAGGGGACCTGGAACGACC	0.542													50	87					0	0	0.139131	0	0
SPOCD1	90853	broad.mit.edu	37	1	32279891	32279891	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:32279891C>T	uc001bts.1	-	2	1102	c.1044G>A	c.(1042-1044)CGG>CGA	p.R348R	SPOCD1_uc001btu.2_Silent_p.R348R|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	348					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CGCTGCCAGTCCGCACGACAC	0.642													11	9					0	0	0.093190	0	0
CSMD2	114784	broad.mit.edu	37	1	34090703	34090703	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:34090703G>A	uc001bxn.1	-	34	5357	c.5328C>T	c.(5326-5328)CTC>CTT	p.L1776L	CSMD2_uc001bxm.1_Silent_p.L1816L|CSMD2_uc001bxo.1_Silent_p.L689L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1776	Sushi 10.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAGGCACAGGGAGGCACTCGA	0.657													25	50					0	0	0.108266	0	0
ADPRHL2	54936	broad.mit.edu	37	1	36558091	36558091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:36558091C>T	uc001bzt.2	+	5	823	c.770C>T	c.(769-771)TCG>TTG	p.S257L	ADPRHL2_uc001bzu.2_Missense_Mutation_p.S103L	NM_017825	NP_060295	Q9NX46	ARHL2_HUMAN	ADP-ribosylhydrolase like 2	257						cytoplasm|nucleus	metal ion binding|poly(ADP-ribose) glycohydrolase activity			pancreas(1)	1		Myeloproliferative disorder(586;0.0393)				GACCAGGCATCGGTGACCAGG	0.582													22	49					0	0	0.116897	0	0
PABPC4	8761	broad.mit.edu	37	1	40033455	40033455	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:40033455A>G	uc010oiv.1	-	7	1838	c.940T>C	c.(940-942)TTT>CTT	p.F314L	PABPC4_uc001cdl.2_Missense_Mutation_p.F314L|PABPC4_uc001cdm.2_Missense_Mutation_p.F314L|SNORA55_uc001cdo.1_5'Flank	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	314	RRM 4.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			AAAGGAGAAAATTCTTTCCTT	0.368													21	33					0	0	0.091800	0	0
TIE1	7075	broad.mit.edu	37	1	43773225	43773225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:43773225G>A	uc001ciu.2	+	6	974	c.895G>A	c.(895-897)GGA>AGA	p.G299R	TIE1_uc010okd.1_Missense_Mutation_p.G299R|TIE1_uc010oke.1_Missense_Mutation_p.G254R|TIE1_uc009vwq.2_Missense_Mutation_p.G255R|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'UTR|TIE1_uc010okc.1_Missense_Mutation_p.G299R	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	299	Extracellular (Potential).|EGF-like 2.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGGCTGGAGAGGAAGCCAGTG	0.617													34	45					0	0	0.059317	0	0
TIE1	7075	broad.mit.edu	37	1	43779533	43779533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:43779533C>T	uc001ciu.2	+	14	2382	c.2303C>T	c.(2302-2304)TCC>TTC	p.S768F	TIE1_uc010oke.1_Missense_Mutation_p.S723F|TIE1_uc009vwq.2_Missense_Mutation_p.S724F|TIE1_uc010okf.1_Missense_Mutation_p.S413F|TIE1_uc010okg.1_Missense_Mutation_p.S413F	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	768	Helical; (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GTGGTGGGCTCCGTGTCTGCC	0.632													14	23					0	0	0.119110	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47365968	47365968	+	RNA	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:47365968G>A	uc001cqo.1	-	1		c.180C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						GGGGGTGCAGGAAACAGGTGC	0.483													13	31					0	0	0.038395	0	0
TTC39A	22996	broad.mit.edu	37	1	51754542	51754542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:51754542C>T	uc001csl.2	-	17	1792	c.1687G>A	c.(1687-1689)GAA>AAA	p.E563K	TTC39A_uc001csk.2_Missense_Mutation_p.E528K|TTC39A_uc010ond.1_Missense_Mutation_p.E500K|TTC39A_uc010one.1_Missense_Mutation_p.E527K|TTC39A_uc010onf.1_Missense_Mutation_p.E531K|TTC39A_uc001csj.2_Missense_Mutation_p.E164K	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	563	TPR 3.						binding			skin(1)	1						ATGGCCTCTTCGTTTCTGTCT	0.502													8	7					0	0	0.038147	0	0
TMEM48	55706	broad.mit.edu	37	1	54258908	54258908	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:54258908G>A	uc001cvs.2	-	14	1870	c.1629C>T	c.(1627-1629)TTC>TTT	p.F543F	TMEM48_uc010onu.1_Silent_p.F503F|TMEM48_uc001cvt.2_Silent_p.F420F|TMEM48_uc009vzk.2_Intron|TMEM48_uc010onv.1_Silent_p.F208F	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	543	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TTACCTTACTGAAAAAATACA	0.303													45	53					0	0	0.139131	0	0
DIO1	1733	broad.mit.edu	37	1	54360021	54360021	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:54360021G>A	uc010onx.1	+	1	161	c.138G>A	c.(136-138)GAG>GAA	p.E46E	DIO1_uc010onw.1_Silent_p.E46E|DIO1_uc009vzl.2_Silent_p.E46E|DIO1_uc001cwb.2_Silent_p.E46E|DIO1_uc010ony.1_Silent_p.E46E|DIO1_uc001cwd.2_RNA|DIO1_uc001cwe.2_RNA|DIO1_uc001cwf.2_RNA|DIO1_uc001cwg.2_RNA	NM_000792	NP_000783	P49895	IOD1_HUMAN	deiodinase, iodothyronine, type I isoform a	46					hormone biosynthetic process|thyroid hormone generation	endoplasmic reticulum membrane|integral to membrane|plasma membrane	selenium binding|thyroxine 5'-deiodinase activity				0						CCATGGGCGAGAAGACGGGTA	0.527													47	71					0	0	0.139131	0	0
PCSK9	255738	broad.mit.edu	37	1	55518359	55518359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:55518359G>A	uc001cyf.1	+	5	985	c.694G>A	c.(694-696)GGG>AGG	p.G232R	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	232	Peptidase S8.				cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						CCACCTGGCAGGGGTGGTCAG	0.637													119	176					0	0	0.139131	0	0
DOCK7	85440	broad.mit.edu	37	1	63084515	63084515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:63084515G>A	uc001daq.2	-	14	1578	c.1544C>T	c.(1543-1545)CCC>CTC	p.P515L	DOCK7_uc001dan.2_Missense_Mutation_p.P407L|DOCK7_uc001dao.2_Missense_Mutation_p.P407L|DOCK7_uc001dap.2_Missense_Mutation_p.P515L|DOCK7_uc009wah.1_Missense_Mutation_p.P515L	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	515					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						TTCAGGTGCGGGAGAAATGTC	0.373													57	85					0	0	0.139131	0	0
RPE65	6121	broad.mit.edu	37	1	68910229	68910229	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:68910229C>T	uc001dei.1	-	5	534	c.480G>A	c.(478-480)TTG>TTA	p.L160L		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	160					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						TAATTGTCTCCAAGGTCTCTG	0.388													36	58					0	0	0.092188	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507480	74507480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:74507480G>A	uc001dfy.3	-	7	1327	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	379										ovary(2)	2						GGATATGCAGGAAAAAAATGT	0.353													23	37					0	0	0.099896	0	0
MSH4	4438	broad.mit.edu	37	1	76313948	76313948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:76313948C>T	uc001dhd.1	+	8	1258	c.1217C>T	c.(1216-1218)CCA>CTA	p.P406L		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	406					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						GTCCAAATTCCAAAGCAAGAC	0.274								MMR					24	34					0	0	0.108266	0	0
PTGFR	5737	broad.mit.edu	37	1	78958579	78958579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:78958579C>T	uc001din.2	+	2	417	c.151C>T	c.(151-153)CTC>TTC	p.L51F	PTGFR_uc001dim.2_Missense_Mutation_p.L51F	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	51	Helical; Name=1; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	CATCGCCATTCTCATGAAGGC	0.443													39	66					0	0	0.092188	0	0
SYDE2	84144	broad.mit.edu	37	1	85648237	85648237	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:85648237C>T	uc009wcm.2	-	3	2137	c.2088G>A	c.(2086-2088)CGG>CGA	p.R696R	SYDE2_uc001dku.3_Silent_p.R696R	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	696	C2.				activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		TTGAATCTATCCGAGGTGGTT	0.388													23	29					0	0	0.076483	0	0
CLCA2	9635	broad.mit.edu	37	1	86905990	86905990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:86905990G>A	uc001dlr.3	+	8	1525	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	455	VWFA.|Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		AAATCTGGAGGAATTATCACG	0.398													22	23					0	0	0.083992	0	0
ZNF644	84146	broad.mit.edu	37	1	91382389	91382389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:91382389G>A	uc001dnw.2	-	6	4092	c.3950C>T	c.(3949-3951)TCA>TTA	p.S1317L	ZNF644_uc001dnv.2_Missense_Mutation_p.S95L|ZNF644_uc001dnx.2_Missense_Mutation_p.S95L	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	1317					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		TAGAGAAAATGAAGTTTCTGT	0.383													20	28					0	0	0.043863	0	0
HSP90B3P	343477	broad.mit.edu	37	1	92108892	92108892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:92108892C>T	uc010osx.1	+	3	919	c.919C>T	c.(919-921)CCT>TCT	p.P307S		NR_003130				SubName: Full=cDNA FLJ58812, highly similar to Endoplasmin (Heat shock protein 90kDa beta member 1);												0						GGCTGAATCTCCTCCATCTGT	0.428													19	31					0	0	0.069288	0	0
NTNG1	22854	broad.mit.edu	37	1	107950325	107950325	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:107950325T>G	uc001dvh.3	+	5	1800	c.1082T>G	c.(1081-1083)ATT>AGT	p.I361S	NTNG1_uc001dvf.3_Missense_Mutation_p.I361S|NTNG1_uc010out.1_Missense_Mutation_p.I361S|NTNG1_uc001dvc.3_Missense_Mutation_p.I361S|NTNG1_uc001dvi.2_5'UTR|NTNG1_uc001dve.2_RNA|NTNG1_uc009wek.2_RNA|NTNG1_uc001dvg.2_RNA|NTNG1_uc009wem.2_Intron|NTNG1_uc001dvd.1_Missense_Mutation_p.I361S	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	361					axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		ATTTCCAGTATTGGTAGTAAG	0.318													15	14					0	0	0.146539	0	0
SORT1	6272	broad.mit.edu	37	1	109888410	109888410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:109888410C>T	uc001dxm.1	-	8	975	c.926G>A	c.(925-927)GGG>GAG	p.G309E	SORT1_uc010ovi.1_Missense_Mutation_p.G172E|SORT1_uc009wfb.2_Missense_Mutation_p.G173E	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	309	Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		GAAACGTCCCCCAAGACCAAA	0.428													154	219					0	0	0.139131	0	0
SLC6A17	388662	broad.mit.edu	37	1	110741021	110741021	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:110741021T>A	uc009wfq.2	+	12	2600	c.2139T>A	c.(2137-2139)TAT>TAA	p.Y713*		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	713	Cytoplasmic (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		ATGGACGCTATGGGAGCGGCT	0.667													46	36					0	0	0.139131	0	0
LOC149620	149620	broad.mit.edu	37	1	111825688	111825688	+	RNA	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:111825688C>T	uc009wgb.2	+	4		c.1207C>T				NR_003928				Homo sapiens CHIA-like pseudogene, mRNA (cDNA clone IMAGE:5176731).												0						GCTGGCATCTCCAACATCCAG	0.517													21	35					0	0	0.076483	0	0
AMPD1	270	broad.mit.edu	37	1	115219982	115219982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:115219982G>A	uc001efe.1	-	10	1462	c.1378C>T	c.(1378-1380)CCC>TCC	p.P460S	AMPD1_uc001eff.1_Missense_Mutation_p.P456S	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	460					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TAGATCCTGGGAACCTGGATC	0.522													17	42					0	0	0.038395	0	0
FAM46C	54855	broad.mit.edu	37	1	118165667	118165667	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:118165667G>A	uc001ehe.2	+	2	376	c.177G>A	c.(175-177)CTG>CTA	p.L59L		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	59											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		GCAGTCGGCTGGAGGAGGCAG	0.562										Multiple Myeloma(3;1.13e-06)			25	45					0	0	0.099896	0	0
HSD3B1	3283	broad.mit.edu	37	1	120056668	120056668	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:120056668G>A	uc001ehv.1	+	4	667	c.522G>A	c.(520-522)CTG>CTA	p.L174L	HSD3B1_uc001ehw.2_Silent_p.L176L	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	174					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	GGTGGAATCTGAAAAACGGCG	0.517													31	40					0	0	0.134883	0	0
HMGCS2	3158	broad.mit.edu	37	1	120307026	120307027	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:120307026_120307027CC>TT	uc001eid.2	-	2	378_379	c.327_328GG>AA	c.(325-330)GTGGTG>GTAATG	p.V110M	HMGCS2_uc010oxj.1_Missense_Mutation_p.V110M|HMGCS2_uc001eie.2_Missense_Mutation_p.V18M	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	110					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		AGCCGTTGCACCACCGTCAGGC	0.54													235	411					0	0	0.115264	0	0
ADAM30	11085	broad.mit.edu	37	1	120438853	120438854	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:120438853_120438854CC>TT	uc001eij.2	-	1	260_261	c.106_107GG>AA	c.(106-108)GGG>AAG	p.G36K		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	36					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		GTCAAACTCCCCTTCAGGGTGA	0.5													211	292					0	0	0.115264	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767518	143767518	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:143767518G>A	uc001ejt.2	-	1	364	c.331C>T	c.(331-333)CAG>TAG	p.Q111*		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	111	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						ATGAAAAACTGGGAACCATTT	0.473													49	483					0	0	0.139131	0	0
SV2A	9900	broad.mit.edu	37	1	149882239	149882239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:149882239C>T	uc001etg.2	-	5	1463	c.972G>A	c.(970-972)ATG>ATA	p.M324I	SV2A_uc001eth.2_Missense_Mutation_p.M324I	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	324	Extracellular (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	AGGCAGAACCCATCTGAAAAC	0.587													10	28					0	0	0.058154	0	0
MTMR11	10903	broad.mit.edu	37	1	149905831	149905831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:149905831G>A	uc001etl.3	-	8	939	c.688C>T	c.(688-690)CCC>TCC	p.P230S	MTMR11_uc001etm.1_Missense_Mutation_p.P158S|MTMR11_uc010pbm.1_Missense_Mutation_p.P202S|MTMR11_uc010pbn.1_Missense_Mutation_p.P72S	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	230	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			AAGTAACGGGGGAGGCTGTGA	0.483													90	89					0	0	0.139131	0	0
C1orf51	148523	broad.mit.edu	37	1	150258992	150258992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:150258992C>T	uc001euh.2	+	6	920	c.784C>T	c.(784-786)CAC>TAC	p.H262Y	C1orf51_uc001eui.2_Missense_Mutation_p.H174Y|C1orf51_uc001euj.2_Missense_Mutation_p.H262Y	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	262											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACCTGGATCCACACCACTCC	0.502													21	155					0	0	0.076483	0	0
TDRKH	11022	broad.mit.edu	37	1	151755429	151755429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:151755429G>A	uc009wnb.1	-	2	252	c.70C>T	c.(70-72)CCA>TCA	p.P24S	TDRKH_uc001eyy.2_5'UTR|TDRKH_uc001ezb.3_Missense_Mutation_p.P24S|TDRKH_uc001ezc.3_Missense_Mutation_p.P24S|TDRKH_uc001eza.3_Missense_Mutation_p.P24S|TDRKH_uc001ezd.3_Missense_Mutation_p.P24S|TDRKH_uc010pdn.1_5'UTR	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	24							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GCACTGGCTGGGATCCCAAGG	0.468													99	134					0	0	0.139131	0	0
RORC	6097	broad.mit.edu	37	1	151787076	151787077	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:151787076_151787077CC>TT	uc001ezh.2	-	6	1014_1015	c.906_907GG>AA	c.(904-909)CGGGAG>CGAAAG	p.E303K	RORC_uc001ezg.2_Missense_Mutation_p.E282K|RORC_uc010pdo.1_Missense_Mutation_p.E357K|RORC_uc010pdp.1_Missense_Mutation_p.E303K	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	303	Ligand-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GTCACTTCCTCCCGGGAGAAGA	0.634													15	28					0	0	0.115264	0	0
HRNR	388697	broad.mit.edu	37	1	152195625	152195625	+	Silent	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:152195625T>C	uc001ezt.1	-	2	181	c.105A>G	c.(103-105)GAA>GAG	p.E35E		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	35	EF-hand 1.|S-100-like.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTTCCAGAAGTTCTTTCAGCT	0.428													54	97					0	0	0.139131	0	0
FLG	2312	broad.mit.edu	37	1	152278879	152278879	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:152278879G>T	uc001ezu.1	-	3	8519	c.8483C>A	c.(8482-8484)TCC>TAC	p.S2828Y		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2828	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGCCCACGGGAGGCATCAGA	0.577									Ichthyosis				165	468					2.69335e-108	2.87043e-108	0.139131	1	0
FLG	2312	broad.mit.edu	37	1	152286710	152286710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:152286710C>T	uc001ezu.1	-	3	688	c.652G>A	c.(652-654)GAA>AAA	p.E218K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	218					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTGTATTTTCATAATCATAT	0.353									Ichthyosis				19	142					0	0	0.043863	0	0
FLG2	388698	broad.mit.edu	37	1	152323795	152323795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:152323795C>T	uc001ezw.3	-	3	6540	c.6467G>A	c.(6466-6468)AGA>AAA	p.R2156K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2156	Filaggrin 10.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGCCATGTCTAGTGGTATC	0.502													112	421					0	0	0.139131	0	0
LCE1A	353131	broad.mit.edu	37	1	152800159	152800159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:152800159C>T	uc010pdw.1	+	1	211	c.211C>T	c.(211-213)CAC>TAC	p.H71Y		NM_178348	NP_848125	Q5T7P2	LCE1A_HUMAN	late cornified envelope 1A	71	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTGCCTGAGCCACCACAGGCG	0.677													44	41					0	0	0.117977	0	0
DENND4B	9909	broad.mit.edu	37	1	153905487	153905487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:153905487G>A	uc001fdd.1	-	22	3874	c.3473C>T	c.(3472-3474)TCC>TTC	p.S1158F	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	1158	Ser-rich.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			ACGGCACAGGGAGCAGCTGGA	0.617													35	104					0	0	0.098360	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155920179	155920179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:155920179G>A	uc001fmt.2	-	21	2916	c.2798C>T	c.(2797-2799)CCC>CTC	p.P933L	ARHGEF2_uc001fmq.2_Missense_Mutation_p.P171L|ARHGEF2_uc001fmr.2_Missense_Mutation_p.P905L|ARHGEF2_uc001fms.2_Missense_Mutation_p.P932L|ARHGEF2_uc001fmu.2_Missense_Mutation_p.P977L	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	933					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CCGCTCTTCGGGGCTCCCCAG	0.627													26	91					0	0	0.108266	0	0
PMF1	11243	broad.mit.edu	37	1	156203421	156203421	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:156203421G>A	uc001fnq.2	+	3	293	c.270G>A	c.(268-270)GAG>GAA	p.E90E	PMF1_uc009wru.1_RNA|PMF1_uc001fnr.2_Silent_p.E90E|BGLAP_uc001fns.1_Silent_p.E90E	NM_007221	NP_009152	Q6P1K2	PMF1_HUMAN	polyamine-modulated factor 1	90					cell division|chromosome segregation|mitotic prometaphase|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytosol|MIS12/MIND type complex|transcription factor complex	leucine zipper domain binding|transcription coactivator activity				0	Hepatocellular(266;0.158)					CTCTTCAGGAGGAAATCTCTG	0.443													60	233					0	0	0.139131	0	0
PEAR1	375033	broad.mit.edu	37	1	156883008	156883008	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:156883008C>T	uc001fqj.1	+	19	2561	c.2445C>T	c.(2443-2445)CAC>CAT	p.H815H	PEAR1_uc001fqk.1_Silent_p.H440H	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	815	Pro-rich.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCTACAGTCACTACTACTCCA	0.607													112	68					0	0	0.139131	0	0
FCRL5	83416	broad.mit.edu	37	1	157494225	157494225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:157494225G>A	uc001fqu.2	-	10	2241	c.2083C>T	c.(2083-2085)CAT>TAT	p.H695Y	FCRL5_uc009wsm.2_Missense_Mutation_p.H695Y|FCRL5_uc010phv.1_Missense_Mutation_p.H695Y|FCRL5_uc010phw.1_Missense_Mutation_p.H610Y	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	695	Extracellular (Potential).|Ig-like C2-type 7.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACATCTTCATGATAAAACCAG	0.572													21	107					0	0	0.069288	0	0
SPTA1	6708	broad.mit.edu	37	1	158639499	158639499	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:158639499C>T	uc001fst.1	-	13	1876	c.1677G>A	c.(1675-1677)GGG>GGA	p.G559G		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	559	Spectrin 6.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTGGACATACCCCGTCACGGA	0.438													61	317					0	0	0.139131	0	0
CRP	1401	broad.mit.edu	37	1	159683428	159683428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:159683428C>T	uc001ftw.2	-	2	666	c.562G>A	c.(562-564)GAG>AAG	p.E188K	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	188	Pentaxin.				acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	GTGTTAATCTCATCTGGTGAC	0.517													54	210					0	0	0.139131	0	0
COPA	1314	broad.mit.edu	37	1	160261985	160261985	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:160261985C>T	uc009wti.2	-	29	3358	c.2964G>A	c.(2962-2964)AAG>AAA	p.K988K	COPA_uc001fvv.3_Silent_p.K997K	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	988					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GCCCTGCATCCTTCCTGGAAA	0.498													197	98					0	0	0.139131	0	0
PVRL4	81607	broad.mit.edu	37	1	161044516	161044516	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:161044516C>T	uc001fxo.2	-	5	1184	c.885G>A	c.(883-885)GTG>GTA	p.V295V	PVRL4_uc010pjy.1_5'Flank|PVRL4_uc010pjz.1_Silent_p.V29V	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	295	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TGTCCCCATCCACTCGTACCC	0.602													12	44					0	0	0.119110	0	0
PPOX	5498	broad.mit.edu	37	1	161140536	161140536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:161140536C>T	uc001fyj.2	+	11	1515	c.1225C>T	c.(1225-1227)CAC>TAC	p.H409Y	PPOX_uc001fyn.2_Missense_Mutation_p.H117Y|PPOX_uc001fyg.2_Missense_Mutation_p.H409Y|PPOX_uc001fyl.2_Missense_Mutation_p.H375Y|PPOX_uc001fym.2_RNA|PPOX_uc001fyk.2_Missense_Mutation_p.H247Y|PPOX_uc001fyh.2_Missense_Mutation_p.H247Y|PPOX_uc010pkg.1_Missense_Mutation_p.H247Y|PPOX_uc009wuc.1_Missense_Mutation_p.H210Y|PPOX_uc010pkh.1_Missense_Mutation_p.H154Y|PPOX_uc001fyi.2_Missense_Mutation_p.H247Y	NM_001122764	NP_001116236	P50336	PPOX_HUMAN	protoporphyrinogen oxidase	409					heme biosynthetic process	intrinsic to mitochondrial inner membrane|mitochondrial intermembrane space	flavin adenine dinucleotide binding|oxygen-dependent protoporphyrinogen oxidase activity			ovary(1)	1	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GATGCCGAGCCACTGCTTGGT	0.507									Porphyria_Variegata				87	23					0	0	0.139131	0	0
FCGR2A	2212	broad.mit.edu	37	1	161476146	161476146	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:161476146G>A	uc001gan.2	+	3	182	c.129G>A	c.(127-129)CTG>CTA	p.L43L	FCGR2A_uc001gam.2_Silent_p.L42L|FCGR2A_uc001gao.2_RNA	NM_001136219	NP_001129691	P12318	FCG2A_HUMAN	Fc fragment of IgG, low affinity IIa, receptor	43	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AGGCTGTGCTGAAACTTGAGC	0.587													38	90					0	0	0.098360	0	0
LMX1A	4009	broad.mit.edu	37	1	165218805	165218805	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:165218805C>T	uc001gcy.1	-	3	557	c.336G>A	c.(334-336)AAG>AAA	p.K112K	LMX1A_uc001gcz.1_Silent_p.K112K	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	112	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					GGTATACACTCTTCTGGGCCC	0.547													20	54					0	0	0.055883	0	0
NME7	29922	broad.mit.edu	37	1	169272414	169272414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:169272414G>A	uc001gfu.2	-	5	647	c.409C>T	c.(409-411)CAT>TAT	p.H137Y	NME7_uc010plq.1_RNA|NME7_uc001gft.2_Missense_Mutation_p.H101Y|NME7_uc001gfv.1_Missense_Mutation_p.H137Y	NM_013330	NP_037462	Q9Y5B8	NDK7_HUMAN	nucleoside diphosphate kinase 7 isoform a	137					CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	centrosome	ATP binding|metal ion binding|nucleoside diphosphate kinase activity			central_nervous_system(1)	1	all_hematologic(923;0.208)					TGATCTACATGAAAATCCAAT	0.284													11	67					0	0	0.105934	0	0
SELE	6401	broad.mit.edu	37	1	169699598	169699599	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:169699598_169699599CC>TT	uc001ggm.3	-	5	846_847	c.689_690GG>AA	c.(688-690)TGG>TAA	p.W230*	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	230	Sushi 1.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TAGGAGCACTCCATTCTCCAGA	0.46													36	119					0	0	0.115264	0	0
FAM5B	57795	broad.mit.edu	37	1	177225096	177225097	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:177225096_177225097GG>AA	uc001glf.2	+	3	623_624	c.311_312GG>AA	c.(310-312)AGG>AAA	p.R104K	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_5'Flank	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	104						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCTCTGGAAAGGAAGGACTTCT	0.495											OREG0014006	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	126					0	0	0.115264	0	0
HMCN1	83872	broad.mit.edu	37	1	186014957	186014957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:186014957C>T	uc001grq.1	+	41	6671	c.6442C>T	c.(6442-6444)CCA>TCA	p.P2148S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2148	Ig-like C2-type 19.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GCTGAAGAAACCAGGCCTCAG	0.383													12	47					0	0	0.093190	0	0
CFH	3075	broad.mit.edu	37	1	196695740	196695740	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:196695740C>T	uc001gtj.3	+	13	2254	c.2014C>T	c.(2014-2016)CAA>TAA	p.Q672*		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	672	Sushi 11.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TAATAAAATTCAATGTGTTGA	0.299													13	61					0	0	0.132662	0	0
F13B	2165	broad.mit.edu	37	1	197021920	197021920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:197021920C>T	uc001gtt.1	-	9	1443	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	467	Sushi 8.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CACTTCATTTCTATGTTATTT	0.303													24	134					0	0	0.076483	0	0
CRB1	23418	broad.mit.edu	37	1	197446914	197446914	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:197446914C>T	uc001gtz.2	+	12	4261	c.4126C>T	c.(4126-4128)CAG>TAG	p.Q1376*	CRB1_uc010poz.1_Nonsense_Mutation_p.Q1352*|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Nonsense_Mutation_p.Q1264*|CRB1_uc010ppb.1_Nonsense_Mutation_p.Q840*|CRB1_uc010ppd.1_Nonsense_Mutation_p.Q857*	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1376	Cytoplasmic (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AAGGGCAACTCAGGGAACCTA	0.527													21	80					0	0	0.055883	0	0
PTPRC	5788	broad.mit.edu	37	1	198701456	198701456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:198701456C>T	uc001gur.1	+	19	2176	c.1996C>T	c.(1996-1998)CCT>TCT	p.P666S	PTPRC_uc001gus.1_Missense_Mutation_p.P618S|PTPRC_uc001gut.1_Missense_Mutation_p.P505S|PTPRC_uc009wzf.1_Missense_Mutation_p.P554S|PTPRC_uc010ppg.1_Missense_Mutation_p.P602S	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	666	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						CAGCAAGTTTCCTATAAAGGA	0.393													20	81					0	0	0.076483	0	0
NR5A2	2494	broad.mit.edu	37	1	200008808	200008808	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:200008808C>T	uc001gvb.2	+	2	293	c.87C>T	c.(85-87)CAC>CAT	p.H29H	NR5A2_uc001gvc.2_Intron|NR5A2_uc009wzh.2_Translation_Start_Site|NR5A2_uc010pph.1_5'Flank|NR5A2_uc009wzg.1_RNA	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	29					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					CGGACCGACACGGATCCCCCA	0.647													29	135					0	0	0.050027	0	0
ELF3	1999	broad.mit.edu	37	1	201981877	201981877	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:201981877C>T	uc001gxg.3	+	4	3780	c.588C>T	c.(586-588)GTC>GTT	p.V196V	ELF3_uc001gxi.3_Silent_p.V196V|ELF3_uc001gxh.3_Silent_p.V196V	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	196					epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						GCTCTGACGTCTCCACCGCAG	0.662													63	19					0	0	0.139131	0	0
MAPKAPK2	9261	broad.mit.edu	37	1	206903358	206903358	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:206903358C>T	uc001hem.1	+	5	892	c.606C>T	c.(604-606)ATC>ATT	p.I202I	MAPKAPK2_uc001hel.1_Silent_p.I202I	NM_032960	NP_116584	P49137	MAPK2_HUMAN	mitogen-activated protein kinase-activated	202	Protein kinase.				activation of MAPK activity|hormone biosynthetic process|innate immune response|leukotriene biosynthetic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|prostanoid metabolic process|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			CCAACGCCATCCTGAAACTCA	0.493													43	150					0	0	0.117977	0	0
CD55	1604	broad.mit.edu	37	1	207504512	207504512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:207504512C>T	uc001hfq.3	+	6	1018	c.724C>T	c.(724-726)CAT>TAT	p.H242Y	CD55_uc001hfp.3_Missense_Mutation_p.H242Y|CD55_uc001hfr.3_Missense_Mutation_p.H242Y|CD55_uc010psf.1_RNA|CD55_uc009xcf.2_Missense_Mutation_p.H178Y|CD55_uc009xce.2_Missense_Mutation_p.H242Y|CD55_uc009xcg.2_5'UTR	NM_000574	NP_000565	P08174	DAF_HUMAN	decay accelerating factor for complement isoform	242	Sushi 4.				complement activation, classical pathway|elevation of cytosolic calcium ion concentration|innate immune response|respiratory burst	anchored to membrane|extracellular region|integral to plasma membrane|membrane raft|soluble fraction	receptor activity			ovary(1)	1					Chloramphenicol(DB00446)	GGAACGTGACCATTATGGATA	0.323													21	88					0	0	0.069288	0	0
IRF6	3664	broad.mit.edu	37	1	209968651	209968651	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:209968651G>A	uc001hhq.1	-	5	755	c.492C>T	c.(490-492)CCC>CCT	p.P164P	IRF6_uc010psm.1_Silent_p.P69P|IRF6_uc009xct.1_Silent_p.P164P	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	164					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		TGTTCAGGAAGGGGAAGGTGT	0.498										HNSCC(57;0.16)			149	68					0	0	0.139131	0	0
RPS6KC1	26750	broad.mit.edu	37	1	213415166	213415166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:213415166C>T	uc010ptr.1	+	11	2506	c.2347C>T	c.(2347-2349)CAT>TAT	p.H783Y	RPS6KC1_uc001hkd.2_Missense_Mutation_p.H771Y|RPS6KC1_uc010pts.1_Missense_Mutation_p.H571Y|RPS6KC1_uc010ptt.1_Missense_Mutation_p.H571Y|RPS6KC1_uc010ptu.1_Missense_Mutation_p.H602Y|RPS6KC1_uc010ptv.1_Missense_Mutation_p.H318Y|RPS6KC1_uc001hke.2_Missense_Mutation_p.H602Y	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	783					cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		AGCTGTTGATCATAGTAGTTC	0.438													39	50					0	0	0.111260	0	0
PROX1	5629	broad.mit.edu	37	1	214170398	214170398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:214170398C>T	uc001hkh.2	+	2	792	c.520C>T	c.(520-522)CGG>TGG	p.R174W	PROX1_uc001hkg.1_Missense_Mutation_p.R174W	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	174					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		GAATATAATTCGGGGTATGAG	0.498													29	88					0	0	0.144211	0	0
TAF1A	9015	broad.mit.edu	37	1	222734783	222734783	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:222734783C>G	uc009xdz.1	-	10	1352	c.1163G>C	c.(1162-1164)TGG>TCG	p.W388S	TAF1A_uc009xdy.1_Missense_Mutation_p.W79S|TAF1A_uc001hni.1_Missense_Mutation_p.W274S|TAF1A_uc001hnj.2_Missense_Mutation_p.W388S|TAF1A_uc001hnk.2_Missense_Mutation_p.W274S	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	388					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		ACTTTTTGCCCAAAAGTAGCT	0.408													336	463					0	0	0.139131	0	0
TLR5	7100	broad.mit.edu	37	1	223285080	223285080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:223285080C>T	uc001hnv.1	-	4	1740	c.1294G>A	c.(1294-1296)GAA>AAA	p.E432K	TLR5_uc001hnw.1_Missense_Mutation_p.E432K	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	432	LRR 10.|Extracellular (Potential).		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		AGCCTGTTTTCTGATAAGTGG	0.393													53	51					0	0	0.139131	0	0
TLR5	7100	broad.mit.edu	37	1	223285573	223285573	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:223285573G>A	uc001hnv.1	-	4	1247	c.801C>T	c.(799-801)GCC>GCT	p.A267A	TLR5_uc001hnw.1_Silent_p.A267A	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	267	Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		AGCCAAACCCGGCACCCATGA	0.493													56	82					0	0	0.139131	0	0
TP53BP2	7159	broad.mit.edu	37	1	223984229	223984229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:223984229G>A	uc010pvb.1	-	13	2304	c.2012C>T	c.(2011-2013)TCC>TTC	p.S671F	TP53BP2_uc001hod.2_Missense_Mutation_p.S542F|TP53BP2_uc010puz.1_5'UTR|TP53BP2_uc010pva.1_Missense_Mutation_p.S310F	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	665					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		CTGGCTATTGGAATAAATGTT	0.453													148	66					0	0	0.139131	0	0
WNT3A	89780	broad.mit.edu	37	1	228238405	228238406	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:228238405_228238406CC>TT	uc001hrq.1	+	3	440_441	c.362_363CC>TT	c.(361-363)GCC>GTT	p.A121V	WNT3A_uc001hrp.1_Missense_Mutation_p.A121V	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	121					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				GCCGGTGTGGCCTTTGCAGTGA	0.629													45	25					0	0	0.115264	0	0
OBSCN	84033	broad.mit.edu	37	1	228559597	228559597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:228559597G>A	uc009xez.1	+	94	21162	c.21118G>A	c.(21118-21120)GGT>AGT	p.G7040S	OBSCN_uc001hsr.1_Missense_Mutation_p.G1669S	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7040	Pro-rich.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCCCAAGCAGGGTTCTGCCCC	0.672													11	36					0	0	0.069234	0	0
URB2	9816	broad.mit.edu	37	1	229779425	229779425	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:229779425G>A	uc001hts.1	+	5	3916	c.3780G>A	c.(3778-3780)TGG>TGA	p.W1260*	URB2_uc009xfd.1_Nonsense_Mutation_p.W1260*	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	1260						nucleolus				central_nervous_system(2)|ovary(1)	3						GTAACATGTGGAAAGCAGATG	0.522													29	130					0	0	0.045705	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232649942	232649942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:232649942C>T	uc001hvg.2	-	1	1302	c.1144G>A	c.(1144-1146)GGG>AGG	p.G382R		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	382					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				TCCTTGCTCCCTAAAGGGGAC	0.507													39	168					0	0	0.086207	0	0
PCNXL2	80003	broad.mit.edu	37	1	233122283	233122283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:233122283C>T	uc001hvl.2	-	33	6030	c.5795G>A	c.(5794-5796)AGG>AAG	p.R1932K	PCNXL2_uc001hvk.1_Missense_Mutation_p.R584K|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1932						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GCCTTTCCTCCTGCCTTTAAA	0.582													5	14					0	0	0.014758	0	0
RYR2	6262	broad.mit.edu	37	1	237778111	237778111	+	Nonsense_Mutation	SNP	C	T	T	rs79660660		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:237778111C>T	uc001hyl.1	+	37	5803	c.5683C>T	c.(5683-5685)CAA>TAA	p.Q1895*		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1895	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGGCCTGCTCCAAATGAAACT	0.483													42	39					0	0	0.139131	0	0
FMN2	56776	broad.mit.edu	37	1	240371651	240371651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:240371651C>T	uc010pyd.1	+	5	3764	c.3539C>T	c.(3538-3540)CCT>CTT	p.P1180L	FMN2_uc010pye.1_Missense_Mutation_p.P1184L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1180	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding	p.P1180S(1)		ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCCTCTACCTGGAGTGGGA	0.687													33	14					0	0	0.131918	0	0
PLD5	200150	broad.mit.edu	37	1	242253243	242253243	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:242253243C>T	uc001hzn.1	-	10	1651	c.1524G>A	c.(1522-1524)CCG>CCA	p.P508P	PLD5_uc001hzl.3_Silent_p.P446P|PLD5_uc001hzm.3_Silent_p.P298P|PLD5_uc001hzo.1_Silent_p.P416P			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	508						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			TTGAGCAGTTCGGCTGTTTGG	0.453													132	108					0	0	0.139131	0	0
SDCCAG8	10806	broad.mit.edu	37	1	243456409	243456409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:243456409C>T	uc001hzw.2	+	6	719	c.563C>T	c.(562-564)TCT>TTT	p.S188F	SDCCAG8_uc010pyk.1_Missense_Mutation_p.S43F|SDCCAG8_uc010pyl.1_Intron|SDCCAG8_uc001hzx.2_Intron|SDCCAG8_uc001hzy.1_Missense_Mutation_p.S4F	NM_006642	NP_006633	Q86SQ7	SDCG8_HUMAN	serologically defined colon cancer antigen 8	188					establishment of cell polarity|G2/M transition of mitotic cell cycle|tube formation	cell-cell junction|centriole|cytosol	protein binding				0	all_cancers(71;0.000545)|all_epithelial(71;0.000509)|all_lung(81;0.0821)|Ovarian(71;0.0919)|all_neural(11;0.101)|Breast(184;0.218)	all_cancers(173;0.00395)	all cancers(7;1.58e-07)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00392)	COAD - Colon adenocarcinoma(196;0.145)		ATGCACAATTCTTGGATTACA	0.373													42	61					0	0	0.117977	0	0
NLRP3	114548	broad.mit.edu	37	1	247588406	247588406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:247588406C>T	uc001icr.2	+	5	1799	c.1661C>T	c.(1660-1662)CCC>CTC	p.P554L	NLRP3_uc001ics.2_Missense_Mutation_p.P554L|NLRP3_uc001icu.2_Missense_Mutation_p.P554L|NLRP3_uc001icw.2_Missense_Mutation_p.P554L|NLRP3_uc001icv.2_Missense_Mutation_p.P554L|NLRP3_uc010pyw.1_Missense_Mutation_p.P552L|NLRP3_uc001ict.1_Missense_Mutation_p.P552L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	554					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TTGAAGCTTCCCAGCCGAGAC	0.478													11	62					0	0	0.069234	0	0
OR2G2	81470	broad.mit.edu	37	1	247752256	247752256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:247752256G>A	uc010pyy.1	+	1	595	c.595G>A	c.(595-597)GAG>AAG	p.E199K		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CACGTTTAACGAGGCTGAGCT	0.522													80	83					0	0	0.139131	0	0
OR2G2	81470	broad.mit.edu	37	1	247752608	247752608	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:247752608T>A	uc010pyy.1	+	1	947	c.947T>A	c.(946-948)ATT>AAT	p.I316N		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	316	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GGAGtaaatattttatgatta	0.323													56	33					0	0	0.139131	0	0
OR11L1	391189	broad.mit.edu	37	1	248004539	248004539	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:248004539G>A	uc001idn.1	-	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AGGACACAATGAAAACATAGG	0.488													21	79					0	0	0.055883	0	0
OR2M4	26245	broad.mit.edu	37	1	248402326	248402327	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:248402326_248402327GG>AA	uc010pzh.1	+	1	96_97	c.96_97GG>AA	c.(94-99)CTGGGC>CTAAGC	p.G33S		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTCTGGTCCTGGGCATCTTCTC	0.48													50	178					0	0	0.115264	0	0
OR2G6	391211	broad.mit.edu	37	1	248684978	248684978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:248684978G>A	uc001ien.1	+	1	31	c.31G>A	c.(31-33)GGA>AGA	p.G11R		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.G11E(1)		ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTCTGAAAAGGGATTTCTTCT	0.418													33	122					0	0	0.080422	0	0
PFKFB3	5209	broad.mit.edu	37	10	6264931	6264931	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:6264931C>T	uc001ije.2	+	11	1581	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	PFKFB3_uc001ijd.2_Silent_p.F379F|PFKFB3_uc009xii.2_Intron|PFKFB3_uc010qaw.1_Silent_p.F413F|PFKFB3_uc001ijf.2_Silent_p.F399F|PFKFB3_uc001ijg.2_5'Flank|PFKFB3_uc009xij.2_5'Flank|PFKFB3_uc009xik.2_5'Flank|PFKFB3_uc009xil.2_5'Flank	NM_004566	NP_004557	Q16875	F263_HUMAN	6-phosphofructo-2-kinase/fructose-2,	399	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(2)|central_nervous_system(1)	3						TTGCCTACTTCCTGGATAAGA	0.667													7	17					0	0	0.038147	0	0
NEBL	10529	broad.mit.edu	37	10	21134298	21134298	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:21134298C>T	uc001iqi.2	-	12	1514	c.1117_splice	c.e12-1	p.K373_splice	NEBL_uc001iqj.2_Splice_Site|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform						regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TGTAAACTTTCTGTTAAATAA	0.323													16	18					0	0	0.033300	0	0
KIAA1217	56243	broad.mit.edu	37	10	24833908	24833908	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:24833908A>C	uc001iru.3	+	20	5615	c.5212_splice	c.e20-2	p.G1738_splice	KIAA1217_uc001irs.2_Splice_Site_p.G1059_splice|KIAA1217_uc001irt.3_Splice_Site_p.G1104_splice|KIAA1217_uc010qcy.1_Splice_Site_p.G1169_splice|KIAA1217_uc010qcz.1_Splice_Site_p.G1144_splice|KIAA1217_uc001irw.2_Splice_Site_p.G888_splice|KIAA1217_uc001irz.2_Splice_Site_p.G822_splice|KIAA1217_uc001irx.2_Splice_Site_p.G1421_splice|KIAA1217_uc001iry.2_Splice_Site_p.G862_splice	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1						embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TCCTTCCCACAGGGCTCCAGC	0.602													74	98					0	0	0.139131	0	0
MYO3A	53904	broad.mit.edu	37	10	26465656	26465656	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:26465656C>T	uc001isn.2	+	31	4680	c.4320C>T	c.(4318-4320)TTC>TTT	p.F1440F	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1440					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AAGAATATTTCATTCTGCAGA	0.383													8	12					0	0	0.038147	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318427	30318427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:30318427C>T	uc001iux.2	-	2	709	c.650G>A	c.(649-651)GGA>GAA	p.G217E	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.G79E|KIAA1462_uc009xle.1_Missense_Mutation_p.G217E	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	217										ovary(4)	4						CACATGTTCTCCTTGAATGAA	0.483													57	97					0	0	0.139131	0	0
SYT15	83849	broad.mit.edu	37	10	46965032	46965032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:46965032G>A	uc001jea.2	-	6	1066	c.913C>T	c.(913-915)CTC>TTC	p.L305F	SYT15_uc001jdz.2_Missense_Mutation_p.L305F|SYT15_uc001jeb.2_Missense_Mutation_p.L183F|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	305	Cytoplasmic (Potential).|C2 2.					integral to membrane|plasma membrane					0						TGGAGCCGGAGGCCCTTGGCA	0.637													6	26					0	0	0.029380	0	0
ZNF488	118738	broad.mit.edu	37	10	48371348	48371348	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:48371348C>T	uc001jex.2	+	2	978	c.816C>T	c.(814-816)TCC>TCT	p.S272S	ZNF488_uc001jey.2_Silent_p.S165S	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	272					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGGGCTTGTCCACCCAGAACT	0.617													21	39					0	0	0.062417	0	0
GDF2	2658	broad.mit.edu	37	10	48414365	48414365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:48414365C>T	uc001jfa.1	-	2	666	c.503G>A	c.(502-504)GGA>GAA	p.G168E		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	168					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GACCACGCTTCCTTTCAGGTC	0.507													12	32					0	0	0.080935	0	0
GDF10	2662	broad.mit.edu	37	10	48428785	48428785	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:48428785C>T	uc001jfb.2	-	2	1557	c.1101G>A	c.(1099-1101)AGG>AGA	p.R367R	GDF10_uc009xnp.2_Silent_p.R366R|GDF10_uc009xnq.1_Silent_p.R367R	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	367					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						CCCACTGCTTCCTCCGGGCTT	0.582													21	27					0	0	0.076483	0	0
C10orf72	196740	broad.mit.edu	37	10	50255061	50255061	+	Silent	SNP	C	T	T	rs142214220	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:50255061C>T	uc001jhf.2	-	7	833	c.804G>A	c.(802-804)CCG>CCA	p.P268P		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	268	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						TCAGCAGCTTCGGTTTATGGA	0.473													98	149					0	0	0.139131	0	0
ASAH2	56624	broad.mit.edu	37	10	52005023	52005023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:52005023C>T	uc001jjd.2	-	2	319	c.319G>A	c.(319-321)GGA>AGA	p.G107R	ASAH2_uc009xos.2_Missense_Mutation_p.G107R	NM_019893	NP_063946	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase 2 isoform a	107	Lumenal (Potential).				apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						TCAGCTCGTCCAACACCAATA	0.448													81	122					0	0	0.139131	0	0
PCDH15	65217	broad.mit.edu	37	10	55569295	55569295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:55569295C>T	uc010qhu.1	-	36	4960	c.4565G>A	c.(4564-4566)AGA>AAA	p.R1522K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Silent_p.K1510K|PCDH15_uc010qht.1_Silent_p.K1503K	NM_001142770	NP_001136242	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-2 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTTTAATTTTCTTTGGCTCTT	0.403										HNSCC(58;0.16)			75	133					0	0	0.139131	0	0
PCDH15	65217	broad.mit.edu	37	10	55587225	55587225	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:55587225A>G	uc001jju.1	-	32	4690	c.4295T>C	c.(4294-4296)GTG>GCG	p.V1432A	PCDH15_uc010qhq.1_Missense_Mutation_p.V1437A|PCDH15_uc010qhr.1_Missense_Mutation_p.V1432A|PCDH15_uc010qhs.1_Missense_Mutation_p.V1444A|PCDH15_uc010qht.1_Missense_Mutation_p.V1439A|PCDH15_uc010qhu.1_Missense_Mutation_p.V1432A|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.V1429A|PCDH15_uc010qhw.1_Missense_Mutation_p.V1392A|PCDH15_uc010qhx.1_Missense_Mutation_p.V1361A|PCDH15_uc010qhy.1_Missense_Mutation_p.V1437A|PCDH15_uc010qhz.1_Missense_Mutation_p.V1432A|PCDH15_uc010qia.1_Missense_Mutation_p.V1410A|PCDH15_uc010qib.1_Missense_Mutation_p.V1407A	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1432	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				gggcgCTGCCACTGGTGCAGG	0.443										HNSCC(58;0.16)			25	26					0	0	0.108266	0	0
PCDH15	65217	broad.mit.edu	37	10	55755479	55755479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:55755479C>T	uc001jju.1	-	21	3193	c.2798G>A	c.(2797-2799)GGG>GAG	p.G933E	PCDH15_uc010qhq.1_Missense_Mutation_p.G938E|PCDH15_uc010qhr.1_Missense_Mutation_p.G933E|PCDH15_uc010qhs.1_Missense_Mutation_p.G945E|PCDH15_uc010qht.1_Missense_Mutation_p.G940E|PCDH15_uc010qhu.1_Missense_Mutation_p.G933E|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.G933E|PCDH15_uc010qhw.1_Missense_Mutation_p.G896E|PCDH15_uc010qhx.1_Missense_Mutation_p.G862E|PCDH15_uc010qhy.1_Missense_Mutation_p.G938E|PCDH15_uc010qhz.1_Missense_Mutation_p.G933E|PCDH15_uc010qia.1_Missense_Mutation_p.G911E|PCDH15_uc010qib.1_Missense_Mutation_p.G911E|PCDH15_uc001jjw.2_Missense_Mutation_p.G933E	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	933	Extracellular (Potential).|Cadherin 9.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				AGCCACCATCCCTTTGTATAT	0.398										HNSCC(58;0.16)			22	26					0	0	0.055883	0	0
ANK3	288	broad.mit.edu	37	10	61815586	61815586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:61815586G>A	uc001jky.2	-	42	13087	c.12895C>T	c.(12895-12897)CCA>TCA	p.P4299S	ANK3_uc001jkw.2_Missense_Mutation_p.P923S|ANK3_uc009xpa.2_Missense_Mutation_p.P923S|ANK3_uc001jkx.2_Missense_Mutation_p.P967S|ANK3_uc010qih.1_Missense_Mutation_p.P1790S|ANK3_uc001jkz.3_Missense_Mutation_p.P1783S|ANK3_uc001jkv.2_Missense_Mutation_p.P322S	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4299					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCTGCTAGTGGTGATGCTGGT	0.393													75	90					0	0	0.139131	0	0
TMEM26	219623	broad.mit.edu	37	10	63195962	63195962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:63195962G>A	uc001jlo.2	-	2	605	c.236C>T	c.(235-237)TCA>TTA	p.S79L	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlq.2_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	79	Helical; (Potential).					integral to membrane					0	Prostate(12;0.0112)					AAGCCATAATGATGGAACGAT	0.343													10	26					0	0	0.069234	0	0
MYPN	84665	broad.mit.edu	37	10	69926297	69926297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:69926297G>A	uc001jnm.3	+	11	2032	c.1847G>A	c.(1846-1848)GGT>GAT	p.G616D	MYPN_uc001jnl.1_Missense_Mutation_p.G616D|MYPN_uc001jnn.3_Missense_Mutation_p.G341D|MYPN_uc001jno.3_Missense_Mutation_p.G616D|MYPN_uc009xps.2_Missense_Mutation_p.G616D|MYPN_uc009xpt.2_Missense_Mutation_p.G616D|MYPN_uc010qit.1_Missense_Mutation_p.G322D|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	616						nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						TCCGAGGCTGGTGTGGTGACC	0.567													26	36					0	0	0.116897	0	0
RUFY2	55680	broad.mit.edu	37	10	70105617	70105617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:70105617C>T	uc001job.2	-	18	2161	c.1834G>A	c.(1834-1836)GAA>AAA	p.E612K	RUFY2_uc001jnz.1_RNA|RUFY2_uc001joa.2_Missense_Mutation_p.E167K	NM_017987	NP_060457	Q8WXA3	RUFY2_HUMAN	RUN and FYVE domain-containing 2 isoform a	626	FYVE-type.					nucleus	metal ion binding			ovary(1)	1						AAAGGTAGTTCGTTGTCAGAG	0.403													57	87					0	0	0.139131	0	0
DDX50	79009	broad.mit.edu	37	10	70670830	70670830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:70670830G>A	uc001jou.2	+	4	574	c.467G>A	c.(466-468)GGG>GAG	p.G156E	DDX50_uc001jot.2_Missense_Mutation_p.G156E|DDX50_uc010qjc.1_Missense_Mutation_p.G156E	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	156	Q motif.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						ACAGGTCGAGGGGTAACATAT	0.323													29	60					0	0	0.134883	0	0
TTC18	118491	broad.mit.edu	37	10	75051077	75051077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:75051077C>T	uc009xrc.2	-	20	2477	c.2356G>A	c.(2356-2358)GAC>AAC	p.D786N	TTC18_uc001jty.2_Missense_Mutation_p.D786N|TTC18_uc001jtv.3_Intron|TTC18_uc001jtw.3_Intron|TTC18_uc001jtx.2_Missense_Mutation_p.D167N	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	786							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					TCCTCAGTGTCTTCTACACCA	0.478													41	69					0	0	0.131918	0	0
ANXA7	310	broad.mit.edu	37	10	75143041	75143041	+	Silent	SNP	G	A	A	rs139287762	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:75143041G>A	uc001jtz.2	-	10	949	c.876C>T	c.(874-876)ATC>ATT	p.I292I	ANXA7_uc001jua.2_Silent_p.I270I|ANXA7_uc001jub.2_Silent_p.I230I|ANXA7_uc010qki.1_Silent_p.I180I|ANXA7_uc009xre.2_Silent_p.I199I|ANXA7_uc009xrf.1_Silent_p.I212I	NM_004034	NP_004025	P20073	ANXA7_HUMAN	annexin VII isoform 2	292	Annexin 2.						calcium ion binding|calcium-dependent phospholipid binding|calcium-dependent protein binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					CAATTTCTCGGATTTCCTGAT	0.378													6	23					0	0	0.021553	0	0
ZMYND17	118490	broad.mit.edu	37	10	75185684	75185684	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:75185684C>T	uc001jud.2	-	5	1020	c.954G>A	c.(952-954)CTG>CTA	p.L318L	ZMYND17_uc001juc.2_Silent_p.L318L|ZMYND17_uc009xrh.2_Silent_p.L341L|ZMYND17_uc009xrg.2_Silent_p.L97L	NM_001024593	NP_001019764	Q4VC12	ZMY17_HUMAN	zinc finger, MYND domain containing 17	318							zinc ion binding			ovary(1)	1	Prostate(51;0.0119)					TGCCAGGTTCCAGGGGTGAAG	0.542													16	18					0	0	0.132662	0	0
NRG3	10718	broad.mit.edu	37	10	84745329	84745329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:84745329G>A	uc001kco.2	+	9	2086	c.2059G>A	c.(2059-2061)GAA>AAA	p.E687K	NRG3_uc010qlz.1_Missense_Mutation_p.E686K|NRG3_uc001kcp.2_Missense_Mutation_p.E490K|NRG3_uc001kcq.2_Missense_Mutation_p.E337K|NRG3_uc001kcr.2_Missense_Mutation_p.E361K	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	711	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		CTTAAGAAATGAAATACAAAG	0.438													18	36					0	0	0.043863	0	0
CYP26C1	340665	broad.mit.edu	37	10	94824257	94824257	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:94824257G>A	uc010qns.1	+	4	825	c.825G>A	c.(823-825)AGG>AGA	p.R275R	CYP26C1_uc009xud.2_Intron	NM_183374	NP_899230	Q6V0L0	CP26C_HUMAN	cytochrome P450, family 26, subfamily C,	275					anterior/posterior pattern formation|central nervous system development|negative regulation of retinoic acid receptor signaling pathway|neural crest cell development|organelle fusion|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			central_nervous_system(1)	1		Colorectal(252;0.122)				ACAGTGCAAGGGAGCTGGGCC	0.592													24	47					0	0	0.116897	0	0
CYP26A1	1592	broad.mit.edu	37	10	94837052	94837052	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:94837052G>A	uc001kil.2	+	7	1530	c.1485G>A	c.(1483-1485)GGG>GGA	p.G495G	CYP26A1_uc001kik.1_Silent_p.G426G|CYP26A1_uc001kim.1_Silent_p.G393G	NM_000783	NP_000774	O43174	CP26A_HUMAN	cytochrome P450, family 26, subfamily A,	495					negative regulation of retinoic acid receptor signaling pathway|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|oxygen binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		Colorectal(252;0.122)				ATTTCCATGGGGAAATCTGAT	0.388													16	20					0	0	0.038395	0	0
C10orf129	142827	broad.mit.edu	37	10	96970436	96970436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:96970436G>A	uc001kke.2	+	5	766	c.641G>A	c.(640-642)AGG>AAG	p.R214K	C10orf129_uc009xuu.1_Missense_Mutation_p.R124K	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	214					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		ACCTACATGAGGACCAAAAGC	0.478													25	29					0	0	0.108266	0	0
TLL2	7093	broad.mit.edu	37	10	98136548	98136548	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:98136548C>T	uc001kml.1	-	18	2575	c.2349G>A	c.(2347-2349)GTG>GTA	p.V783V		NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	783	CUB 4.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		GGGTCCCCTCCACACTGCTGA	0.577													26	41					0	0	0.108266	0	0
RRP12	23223	broad.mit.edu	37	10	99126318	99126318	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:99126318G>A	uc001knf.2	-	28	3415	c.3276C>T	c.(3274-3276)AGC>AGT	p.S1092S	RRP12_uc001kne.2_Silent_p.S107S|RRP12_uc009xvl.2_Silent_p.S209S|RRP12_uc009xvm.2_Silent_p.S810S|RRP12_uc010qou.1_Silent_p.S1031S|RRP12_uc009xvn.2_Silent_p.S992S	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	1092						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		CCTTGCCTCGGCTTCTTTCCT	0.587													50	70					0	0	0.139131	0	0
PYROXD2	84795	broad.mit.edu	37	10	100152760	100152760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:100152760G>A	uc001kpc.2	-	9	952	c.866C>T	c.(865-867)GCC>GTC	p.A289V	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	289							oxidoreductase activity			central_nervous_system(1)	1						ATCAGAGAGGGCACCCATGCC	0.597													28	36					0	0	0.045705	0	0
CNNM1	26507	broad.mit.edu	37	10	101122015	101122015	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:101122015G>A	uc001kpp.3	+	4	2179	c.1890G>A	c.(1888-1890)TCG>TCA	p.S630S	CNNM1_uc009xwe.2_Silent_p.S630S|CNNM1_uc010qpi.1_Silent_p.S630S|CNNM1_uc009xwf.2_Silent_p.S630S|CNNM1_uc009xwg.2_Silent_p.S30S	NM_020348	NP_065081	Q9NRU3	CNNM1_HUMAN	cyclin M1	630					ion transport	integral to membrane|plasma membrane					0		Colorectal(252;0.234)		Epithelial(162;6.82e-10)|all cancers(201;5.62e-08)		TGTACCTTTCGGAGAAGATCC	0.537													11	20					0	0	0.080935	0	0
COL17A1	1308	broad.mit.edu	37	10	105795286	105795286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:105795286C>T	uc001kxr.2	-	49	3623	c.3454G>A	c.(3454-3456)GGG>AGG	p.G1152R		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1152	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CCAGGGGGCCCCGGGGGACCA	0.617													9	17					0	0	0.058154	0	0
SMC3	9126	broad.mit.edu	37	10	112356173	112356173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:112356173C>T	uc001kze.2	+	19	2107	c.1981C>T	c.(1981-1983)CGG>TGG	p.R661W		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	661	Flexible hinge.				cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		AGTCAGCCATCGGGGTGCTCT	0.353													23	29					0	0	0.116897	0	0
ACSL5	51703	broad.mit.edu	37	10	114177604	114177604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:114177604G>A	uc001kzs.2	+	14	1360	c.1219G>A	c.(1219-1221)GAC>AAC	p.D407N	ACSL5_uc001kzt.2_Missense_Mutation_p.D407N|ACSL5_uc001kzu.2_Missense_Mutation_p.D463N|ACSL5_uc009xxz.2_Missense_Mutation_p.D407N|ACSL5_uc010qrj.1_Missense_Mutation_p.D189N	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	407	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		CACTGAACAGGACAGCCTGGG	0.338													41	68					0	0	0.117977	0	0
SLC18A2	6571	broad.mit.edu	37	10	119026272	119026272	+	Silent	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:119026272T>C	uc001ldd.1	+	11	1051	c.1020T>C	c.(1018-1020)TCT>TCC	p.S340S	SLC18A2_uc009xyy.1_Silent_p.S137S	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	340	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	CTAGTATCTCTTATCTCATTG	0.348													68	105					0	0	0.139131	0	0
HTRA1	5654	broad.mit.edu	37	10	124266317	124266317	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:124266317C>T	uc001lgj.2	+	4	1016	c.888C>T	c.(886-888)ATC>ATT	p.I296I		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	296	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				CCACCGGGATCGTGAGCACCA	0.617													29	46					0	0	0.144211	0	0
DOCK1	1793	broad.mit.edu	37	10	128824626	128824626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:128824626C>T	uc001ljt.2	+	16	1563	c.1499C>T	c.(1498-1500)CCC>CTC	p.P500L	DOCK1_uc010qun.1_Missense_Mutation_p.P521L	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	500	DHR-1.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		GTGGCCATTCCCATCGAGGAC	0.438													3	3					0	0	0.009096	0	0
MKI67	4288	broad.mit.edu	37	10	129897478	129897478	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:129897478A>C	uc001lke.2	-	15	9942	c.9747T>G	c.(9745-9747)AGT>AGG	p.S3249R	MKI67_uc001lkf.2_Missense_Mutation_p.S2889R	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	3249					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TGTCCCTATGACTTCTGGTTC	0.313													15	11					0	0	0.038395	0	0
EBF3	253738	broad.mit.edu	37	10	131671816	131671817	+	Missense_Mutation	DNP	GG	AA	AA	rs150383257		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:131671816_131671817GG>AA	uc001lki.1	-	8	739_740	c.680_681CC>TT	c.(679-681)GCC>GTT	p.A227V		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	227					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		TGTCTGACACGGCCAGCACGTG	0.525													20	27					0	0	0.115264	0	0
TCERG1L	256536	broad.mit.edu	37	10	132944875	132944875	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:132944875C>T	uc001lkp.2	-	7	1169	c.1083G>A	c.(1081-1083)ACG>ACA	p.T361T	TCERG1L_uc009yax.1_RNA	NM_174937	NP_777597	Q5VWI1	TCRGL_HUMAN	transcription elongation regulator 1-like	361	WW 2.									large_intestine(2)|ovary(2)	4		all_cancers(35;1.22e-10)|all_epithelial(44;2.65e-09)|Lung NSC(174;0.00188)|all_lung(145;0.00307)|Melanoma(40;0.0179)|all_neural(114;0.0424)|Breast(234;0.0743)|Colorectal(57;0.09)		all cancers(32;0.000899)|OV - Ovarian serous cystadenocarcinoma(35;0.0021)|Epithelial(32;0.00276)		ACAGGTGCATCGTTGGGTTGA	0.542													14	25					0	0	0.146539	0	0
LRRC27	80313	broad.mit.edu	37	10	134158143	134158143	+	Missense_Mutation	SNP	C	T	T	rs149563961	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:134158143C>T	uc010quw.1	+	5	737	c.542C>T	c.(541-543)CCA>CTA	p.P181L	LRRC27_uc001llf.2_Missense_Mutation_p.P181L|LRRC27_uc010quv.1_Missense_Mutation_p.P181L|LRRC27_uc001llg.2_RNA|LRRC27_uc001lli.2_Missense_Mutation_p.P181L|LRRC27_uc001llj.2_Missense_Mutation_p.P119L|LRRC27_uc001llk.3_Missense_Mutation_p.P54L	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a	181										ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		CCCAGAAATCCAACTTCTCAA	0.453													29	40					0	0	0.116897	0	0
MUC2	4583	broad.mit.edu	37	11	1093803	1093803	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:1093803C>T	uc001lsx.1	+	33	12735	c.12708C>T	c.(12706-12708)ACC>ACT	p.T4236T		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4236						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	AGTCAACCACCCTTCTGAGTA	0.617													81	127					0	0	0.139131	0	0
TRPM5	29850	broad.mit.edu	37	11	2434128	2434128	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:2434128C>T	uc001lwm.3	-	15	2220	c.2211G>A	c.(2209-2211)GGG>GGA	p.G737G	TRPM5_uc010qxl.1_Silent_p.G737G|TRPM5_uc009ydn.2_Silent_p.G739G	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	737	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGACCACGTTCCCCAGGAACA	0.662													159	210					0	0	0.139131	0	0
OSBPL5	114879	broad.mit.edu	37	11	3111846	3111846	+	Silent	SNP	G	A	A	rs139713716		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:3111846G>A	uc001lxk.2	-	20	2498	c.2340C>T	c.(2338-2340)TCC>TCT	p.S780S	OSBPL5_uc010qxq.1_Silent_p.S691S|OSBPL5_uc009ydw.2_Silent_p.S712S|OSBPL5_uc001lxl.2_Silent_p.S712S|OSBPL5_uc001lxj.2_Silent_p.S234S	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	780					cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		ACTCAGGCGTGGATCCGCTGC	0.667													21	28					0	0	0.069288	0	0
OR51S1	119692	broad.mit.edu	37	11	4869859	4869859	+	Missense_Mutation	SNP	G	A	A	rs142743963	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:4869859G>A	uc010qyo.1	-	1	580	c.580C>T	c.(580-582)CGT>TGT	p.R194C		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGGCCAAACGAGCCACATCT	0.552													48	57					0	0	0.139131	0	0
OR51A7	119687	broad.mit.edu	37	11	4928900	4928900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:4928900G>A	uc010qyq.1	+	1	301	c.301G>A	c.(301-303)GAA>AAA	p.E101K		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTTTGCTCAAGAATTCTTCAT	0.443													46	51					0	0	0.139131	0	0
OR51A4	401666	broad.mit.edu	37	11	4967648	4967648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:4967648C>T	uc010qys.1	-	1	683	c.683G>A	c.(682-684)GGA>GAA	p.G228E		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGATGCAATTCCCAGTACAGT	0.433													20	31					0	0	0.049695	0	0
OR52A5	390054	broad.mit.edu	37	11	5153501	5153501	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:5153501G>A	uc010qyx.1	-	1	372	c.372C>T	c.(370-372)CGC>CGT	p.R124R		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TGGCCACATAGCGATCCAGGG	0.468													18	28					0	0	0.038395	0	0
OR51B4	79339	broad.mit.edu	37	11	5322905	5322905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:5322905G>A	uc010qza.1	-	1	272	c.272C>T	c.(271-273)GCC>GTC	p.A91V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCAGCATGGGCAATCTCCCT	0.502													22	36					0	0	0.055883	0	0
OR52N2	390077	broad.mit.edu	37	11	5842175	5842175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:5842175G>A	uc010qzp.1	+	1	610	c.610G>A	c.(610-612)GTT>ATT	p.V204I	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGTCTGATGGTTGCTCTCCT	0.463													87	126					0	0	0.139131	0	0
OR52E6	390078	broad.mit.edu	37	11	5862771	5862771	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:5862771G>A	uc010qzq.1	-	1	357	c.357C>T	c.(355-357)GCC>GCT	p.A119A	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAAAGGCCATGGCCACCAATA	0.448													74	98					0	0	0.139131	0	0
OR56A5	390084	broad.mit.edu	37	11	5988900	5988900	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:5988900G>A	uc010qzu.1	-	1	825	c.825C>T	c.(823-825)GTC>GTT	p.V275V		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	275	Extracellular (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GCAGGATGGGGACATCCGGAG	0.517													10	17					0	0	0.069234	0	0
SYT9	143425	broad.mit.edu	37	11	7439255	7439255	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:7439255G>A	uc001mfe.2	+	5	1470	c.1233G>A	c.(1231-1233)AAG>AAA	p.K411K	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	411	Cytoplasmic (Potential).|C2 2.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CATCCACCAAGAGGAACACCT	0.468													39	31					0	0	0.086207	0	0
OR10A6	390093	broad.mit.edu	37	11	7950061	7950061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:7950061G>A	uc010rbh.1	-	1	149	c.149C>T	c.(148-150)TCC>TTC	p.S50F		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTGGTCTAGGGAGACGATGAC	0.463													46	58					0	0	0.139131	0	0
OR10A3	26496	broad.mit.edu	37	11	7960955	7960955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:7960955G>A	uc010rbi.1	-	1	113	c.113C>T	c.(112-114)ACC>ATC	p.T38I		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCCCATCAGGGTCACCACATA	0.473													32	38					0	0	0.144211	0	0
SLC17A6	57084	broad.mit.edu	37	11	22384297	22384297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:22384297G>A	uc001mqk.2	+	6	1087	c.674G>A	c.(673-675)GGA>GAA	p.G225E		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	225	Helical; (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						TCCTATGCCGGAGCTGTGATT	0.398													25	43					0	0	0.134883	0	0
RCN1	5954	broad.mit.edu	37	11	32126010	32126010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:32126010G>A	uc010reb.1	+	6	1254	c.988G>A	c.(988-990)GAG>AAG	p.E330K	RCN1_uc010rea.1_Missense_Mutation_p.E279K|RCN1_uc001mtk.2_Missense_Mutation_p.E164K	NM_002901	NP_002892	Q15293	RCN1_HUMAN	reticulocalbin 1 precursor	330	Prevents secretion from ER.					endoplasmic reticulum lumen	calcium ion binding			large_intestine(1)	1	Lung SC(675;0.225)					AAATCATGATGAGCTTTGATA	0.393													21	5					0	0	0.091800	0	0
CSTF3	1479	broad.mit.edu	37	11	33123756	33123756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:33123756G>A	uc001muh.2	-	10	959	c.793C>T	c.(793-795)CGT>TGT	p.R265C	TCP11L1_uc001muf.1_Intron	NM_001326	NP_001317	Q12996	CSTF3_HUMAN	cleavage stimulation factor subunit 3 isoform 1	265					mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding				0						TCCTCTGTACGAAGAGGGTTG	0.313													27	38					0	0	0.045705	0	0
CSTF3	1479	broad.mit.edu	37	11	33123758	33123758	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:33123758A>T	uc001muh.2	-	10	957	c.791T>A	c.(790-792)CTT>CAT	p.L264H	TCP11L1_uc001muf.1_Intron	NM_001326	NP_001317	Q12996	CSTF3_HUMAN	cleavage stimulation factor subunit 3 isoform 1	264					mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding				0						CTCTGTACGAAGAGGGTTGCT	0.318													27	38					0	0	0.045705	0	0
C11orf74	119710	broad.mit.edu	37	11	36631725	36631725	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:36631725C>T	uc001mwy.1	+	2	145	c.72C>T	c.(70-72)TTC>TTT	p.F24F	C11orf74_uc010rfd.1_RNA|C11orf74_uc001mww.1_Silent_p.F24F|C11orf74_uc001mwx.1_RNA|C11orf74_uc001mwz.1_Silent_p.F24F|C11orf74_uc010rfe.1_RNA	NM_138787	NP_620142	Q86VG3	CK074_HUMAN	hypothetical protein LOC119710	24											0	all_lung(20;0.226)	all_hematologic(20;0.0118)				TGGATAAATTCCTTAATTGTC	0.358													18	29					0	0	0.043863	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564804	46564804	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:46564804G>A	uc010rgu.1	-	7	1123	c.763C>T	c.(763-765)CAG>TAG	p.Q255*	AMBRA1_uc010rgt.1_5'Flank|AMBRA1_uc009ylc.1_Nonsense_Mutation_p.Q255*|AMBRA1_uc001ncu.1_Nonsense_Mutation_p.Q255*|AMBRA1_uc001ncv.2_Nonsense_Mutation_p.Q255*|AMBRA1_uc001ncw.2_Nonsense_Mutation_p.Q255*|AMBRA1_uc001ncx.2_Nonsense_Mutation_p.Q255*	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	255					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		TCTCCCACCTGGATGCCAGAA	0.627													9	10					0	0	0.069234	0	0
MYBPC3	4607	broad.mit.edu	37	11	47364160	47364160	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:47364160C>T	uc001nfa.3	-	16	1648	c.1593G>A	c.(1591-1593)GGG>GGA	p.G531G	MYBPC3_uc010rhl.1_RNA	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	530	Ig-like C2-type 3.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		GCGCCTGGCCCCCGCTAGTGC	0.637													10	15					0	0	0.058154	0	0
LOC440040	440040	broad.mit.edu	37	11	49598041	49598041	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:49598041G>A	uc010rhy.1	+	2	632	c.154G>A	c.(154-156)GAC>AAC	p.D52N	LOC440040_uc009ymb.2_Missense_Mutation_p.D52N	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						GATCAATTCAGACCCCACACT	0.522													3	7					0	0	0.115264	0	0
OR4C12	283093	broad.mit.edu	37	11	50003995	50003995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:50003995G>A	uc010ria.1	-	1	43	c.43C>T	c.(43-45)CTT>TTT	p.L15F		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TTCTGTGTAAGACCTATTAAA	0.353													21	26					0	0	0.049695	0	0
OR5J2	282775	broad.mit.edu	37	11	55944228	55944228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:55944228G>A	uc010rjb.1	+	1	135	c.135G>A	c.(133-135)ATG>ATA	p.M45I		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					ATCTGGGCATGATCCTCTTAA	0.418													69	78					0	0	0.139131	0	0
OR5M8	219484	broad.mit.edu	37	11	56258383	56258383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:56258383C>T	uc001nix.1	-	1	464	c.464G>A	c.(463-465)GGC>GAC	p.G155D		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					CTCCATCAGGCCAGTGAGCGC	0.512													31	38					0	0	0.125774	0	0
LRRC55	219527	broad.mit.edu	37	11	56954765	56954765	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:56954765C>T	uc001njl.1	+	2	984	c.837C>T	c.(835-837)GCC>GCT	p.A279A	LRRC55_uc001njm.1_5'Flank	NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	249	LRRCT.					integral to membrane					0						TCGAGGGCGCCCCGCTCTTCT	0.597													48	56					0	0	0.139131	0	0
LPXN	9404	broad.mit.edu	37	11	58295604	58295604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:58295604G>A	uc001nmw.2	-	8	948	c.803C>T	c.(802-804)CCC>CTC	p.P268L	LPXN_uc009ymp.2_Missense_Mutation_p.P138L|LPXN_uc010rkj.1_Missense_Mutation_p.P273L|LPXN_uc010rkk.1_Missense_Mutation_p.P248L	NM_004811	NP_004802	O60711	LPXN_HUMAN	leupaxin isoform 2	268	LIM zinc-binding 3.				cell adhesion|protein complex assembly|signal transduction	cytoplasm	zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				ACCACACTTGGGTGAGAACAT	0.473													46	73					0	0	0.139131	0	0
GLYATL2	219970	broad.mit.edu	37	11	58601914	58601914	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:58601914C>T	uc001nnd.3	-	6	1004	c.873G>A	c.(871-873)AAG>AAA	p.K291K	GLYATL2_uc009ymq.2_Silent_p.K291K	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	291						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	AACAATATTTCTTGGGGGTGC	0.363													26	15					0	0	0.125774	0	0
OR4D10	390197	broad.mit.edu	37	11	59245249	59245249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:59245249C>T	uc001nnz.1	+	1	347	c.347C>T	c.(346-348)TCG>TTG	p.S116L		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TTTTCTCTTTCGGTGATGGCA	0.478													33	39					0	0	0.045705	0	0
TCN1	6947	broad.mit.edu	37	11	59629071	59629071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:59629071G>A	uc001noj.2	-	4	583	c.485C>T	c.(484-486)TCA>TTA	p.S162L		NM_001062	NP_001053	P20061	TCO1_HUMAN	transcobalamin I precursor	162					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular region	cobalamin binding			ovary(2)	2		all_epithelial(135;0.198)			Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTCGGCGGTTGAGTAGTTCCC	0.443													43	44					0	0	0.111260	0	0
FEN1	2237	broad.mit.edu	37	11	61563912	61563912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:61563912C>T	uc001nsg.2	+	2	1451	c.1079C>T	c.(1078-1080)CCC>CTC	p.P360L		NM_004111	NP_004102	P39748	FEN1_HUMAN	flap structure-specific endonuclease 1	360					base-excision repair|DNA replication, removal of RNA primer|double-strand break repair|phosphatidylinositol-mediated signaling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|UV protection	mitochondrion|nucleolus|nucleoplasm	5'-3' exonuclease activity|5'-flap endonuclease activity|damaged DNA binding|double-stranded DNA binding|double-stranded DNA specific exodeoxyribonuclease activity|metal ion binding|protein binding|ribonuclease H activity			ovary(1)	1						GAGCCAGAACCCAAGGGATCC	0.522								Direct_reversal_of_damage|Editing_and_processing_nucleases					5	13					0	0	0.014758	0	0
NAA40	79829	broad.mit.edu	37	11	63721833	63721833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:63721833C>T	uc009yoz.2	+	8	723	c.596C>T	c.(595-597)CCC>CTC	p.P199L	NAA40_uc010rmw.1_Missense_Mutation_p.P159L|NAA40_uc010rmx.1_Missense_Mutation_p.P178L|NAA40_uc010rmy.1_RNA	NM_024771	NP_079047	Q86UY6	NAA40_HUMAN	N-acetyltransferase 11	199	N-acetyltransferase.						N-acetyltransferase activity				0						GACTCTTCCCCCAGCATGTCC	0.582													12	24					0	0	0.093190	0	0
EHD1	10938	broad.mit.edu	37	11	64622297	64622297	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:64622297G>A	uc001obu.1	-	5	1368	c.1113C>T	c.(1111-1113)TTC>TTT	p.F371F	EHD1_uc001obt.1_Silent_p.F54F|EHD1_uc001obv.1_Silent_p.F371F|EHD1_uc010rnq.1_Silent_p.F385F	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	371					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						TCAGCGCCTGGAACTTGCTGA	0.637													122	140					0	0	0.139131	0	0
CAPN1	823	broad.mit.edu	37	11	64976830	64976830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:64976830C>T	uc009yqd.1	+	17	1877	c.1766C>T	c.(1765-1767)TCG>TTG	p.S589L	CAPN1_uc001odf.1_Missense_Mutation_p.S589L|CAPN1_uc001odg.1_Missense_Mutation_p.S589L|CAPN1_uc010roa.1_Missense_Mutation_p.S330L	NM_005186	NP_005177	P07384	CAN1_HUMAN	calpain 1, large subunit	589	Domain IV.|EF-hand 2.				positive regulation of cell proliferation|proteolysis	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Lung NSC(402;0.094)|Melanoma(852;0.16)		Lung(977;0.00168)|LUSC - Lung squamous cell carcinoma(976;0.00813)		AGCCTAGAGTCGTGCCGCAGC	0.547													6	13					0	0	0.029380	0	0
TIGD3	220359	broad.mit.edu	37	11	65123767	65123767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:65123767C>T	uc001odo.3	+	2	651	c.488C>T	c.(487-489)TCC>TTC	p.S163F		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	163					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						CTGCCTCTTTCCCTAAAAGAC	0.587													56	119					0	0	0.139131	0	0
SIPA1	6494	broad.mit.edu	37	11	65408787	65408787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:65408787C>T	uc001ofb.2	+	2	562	c.395C>T	c.(394-396)TCT>TTT	p.S132F	SIPA1_uc010rom.1_Missense_Mutation_p.S132F|SIPA1_uc001ofd.2_Missense_Mutation_p.S132F	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	132					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						GCTCCGAGGTCTCAGGGGATG	0.627													25	39					0	0	0.091800	0	0
NPAS4	266743	broad.mit.edu	37	11	66190649	66190649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:66190649G>A	uc001ohx.1	+	5	930	c.754G>A	c.(754-756)GGA>AGA	p.G252R	NPAS4_uc010rpc.1_Intron	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	252	PAS 2.				transcription, DNA-dependent		DNA binding|signal transducer activity				0						ATCATGGTATGGACTGCTGCA	0.542													10	9					0	0	0.093190	0	0
TBC1D10C	374403	broad.mit.edu	37	11	67171744	67171744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:67171744C>T	uc001ola.2	+	2	100	c.71C>T	c.(70-72)TCC>TTC	p.S24F	PPP1CA_uc009yro.1_5'Flank|PPP1CA_uc001okt.1_5'Flank|PPP1CA_uc001oku.1_5'Flank|PPP1CA_uc001okv.1_5'Flank|PPP1CA_uc001okw.1_5'Flank|PPP1CA_uc001okx.1_Intron|PPP1CA_uc001oky.2_5'Flank|TBC1D10C_uc001okz.2_Missense_Mutation_p.S24F|TBC1D10C_uc001olb.2_RNA	NM_198517	NP_940919	Q8IV04	TB10C_HUMAN	TBC1 domain family, member 10C	24						intracellular	Rab GTPase activator activity				0			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			TCCTTGGGGTCCGACTCAGAG	0.682													8	8					0	0	0.069234	0	0
RPS6KB2	6199	broad.mit.edu	37	11	67200855	67200855	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:67200855C>T	uc001old.2	+	10	925	c.843C>T	c.(841-843)ATC>ATT	p.I281I	RPS6KB2_uc001olf.2_Silent_p.I81I|RPS6KB2_uc001olg.2_Silent_p.I281I|RPS6KB2_uc009yrq.2_Silent_p.I81I|RPS6KB2_uc001ole.2_RNA|RPS6KB2_uc001olh.2_Intron|RPS6KB2_uc009yrr.2_Silent_p.I112I	NM_003952	NP_003943	Q9UBS0	KS6B2_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	281	Protein kinase.				nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of translational initiation|translation	nucleoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|stomach(1)|lung(1)|salivary_gland(1)	7			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			TGGATAAGATCATCAGGGGCA	0.627													50	69					0	0	0.139131	0	0
PITPNM1	9600	broad.mit.edu	37	11	67261749	67261749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:67261749C>T	uc001olx.2	-	18	3014	c.2825G>A	c.(2824-2826)GGG>GAG	p.G942E	PITPNM1_uc001olw.2_Missense_Mutation_p.G224E|PITPNM1_uc001oly.2_Missense_Mutation_p.G942E|PITPNM1_uc001olz.2_Missense_Mutation_p.G941E	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	942					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						GTCCAGGGGCCCGTACATGAA	0.667													15	26					0	0	0.132662	0	0
CLPB	81570	broad.mit.edu	37	11	72145343	72145343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:72145343G>A	uc001osj.2	-	1	226	c.176C>T	c.(175-177)TCG>TTG	p.S59L	CLPB_uc010rqx.1_5'UTR|CLPB_uc010rqy.1_Missense_Mutation_p.S59L|CLPB_uc001osk.2_Missense_Mutation_p.S59L|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_5'UTR	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	59					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						CAAGGCCGGCGATGTTCCAGG	0.697											OREG0021194	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	64	103					0	0	0.139131	0	0
MAP6	4135	broad.mit.edu	37	11	75299100	75299100	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:75299100C>T	uc001owu.2	-	4	1511	c.1446G>A	c.(1444-1446)CTG>CTA	p.L482L		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	482						Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					CTTGCTTCTTCAGAGGCTCTT	0.522													58	24					0	0	0.139131	0	0
CCDC83	220047	broad.mit.edu	37	11	85606418	85606418	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:85606418G>A	uc001pbh.1	+	6	1106	c.594G>A	c.(592-594)TGG>TGA	p.W198*	CCDC83_uc001pbg.1_Nonsense_Mutation_p.W198*|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Nonsense_Mutation_p.W99*	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	198										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				AGAAGGAATGGGCCACACAGG	0.294													20	8					0	0	0.091800	0	0
FAT3	120114	broad.mit.edu	37	11	92531183	92531183	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:92531183C>T	uc001pdj.3	+	9	5021	c.5004C>T	c.(5002-5004)CAC>CAT	p.H1668H		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1668	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACAATTCTCACCCCAAGTTCA	0.438										TCGA Ovarian(4;0.039)			211	90					0	0	0.139131	0	0
FAT3	120114	broad.mit.edu	37	11	92532383	92532383	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:92532383G>A	uc001pdj.3	+	9	6221	c.6204G>A	c.(6202-6204)GTG>GTA	p.V2068V		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2068	Extracellular (Potential).|Cadherin 18.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGGCCAGAGTGGTGGTCAGGG	0.517										TCGA Ovarian(4;0.039)			228	86					0	0	0.139131	0	0
MMP20	9313	broad.mit.edu	37	11	102496038	102496038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:102496038G>A	uc001phc.2	-	1	26	c.13C>T	c.(13-15)CCT>TCT	p.P5S		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	5					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		CCAGATGCAGGGAGCACCTTC	0.532													9	7					0	0	0.047766	0	0
HTR3A	3359	broad.mit.edu	37	11	113860336	113860336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:113860336G>A	uc010rxb.1	+	8	1635	c.1402G>A	c.(1402-1404)GAA>AAA	p.E468K	HTR3A_uc010rxa.1_Missense_Mutation_p.E436K|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.E415K	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	430	HA-stretch.|Cytoplasmic (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	GCAATTCCTGGAAAAGCGGGA	0.647													33	22					0	0	0.059317	0	0
NNMT	4837	broad.mit.edu	37	11	114168756	114168756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:114168756G>A	uc001por.1	+	4	502	c.238G>A	c.(238-240)GAG>AAG	p.E80K	NNMT_uc001pos.1_Missense_Mutation_p.E80K	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	80					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	ATCCTTTAAGGAGATCGTCGT	0.537													31	17					0	0	0.054565	0	0
CBL	867	broad.mit.edu	37	11	119103291	119103291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:119103291G>A	uc001pwe.2	+	2	467	c.329G>A	c.(328-330)GGA>GAA	p.G110E		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	110	Cbl-PTB.|4H.				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		GAGACACTTGGAGAAAATGAG	0.398									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				20	13					0	0	0.055883	0	0
OR8B3	390271	broad.mit.edu	37	11	124266550	124266550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr11:124266550C>T	uc010saj.1	-	1	698	c.698G>A	c.(697-699)GGA>GAA	p.G233E	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		TTTTGATCTTCCTTGAGTGGA	0.373													51	9					0	0	0.139131	0	0
IQSEC3	440073	broad.mit.edu	37	12	278224	278224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:278224C>T	uc001qhw.1	+	9	2114	c.2108C>T	c.(2107-2109)CCC>CTC	p.P703L	IQSEC3_uc001qhu.1_Missense_Mutation_p.P703L	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	1006					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		TCCTTCAAGCCCTGCGGAGCC	0.612													34	50					0	0	0.080422	0	0
ERC1	23085	broad.mit.edu	37	12	1225057	1225057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:1225057C>T	uc001qjb.2	+	7	1668	c.1427C>T	c.(1426-1428)TCC>TTC	p.S476F	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Missense_Mutation_p.S448F|ERC1_uc001qja.2_RNA|ERC1_uc001qjd.2_Intron|ERC1_uc001qjf.2_Missense_Mutation_p.S476F|ERC1_uc010sdv.1_Missense_Mutation_p.S224F|ERC1_uc009zdp.2_Missense_Mutation_p.S116F	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	476	Potential.				I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding			ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			CAGGAGCTGTCCAGAAAGGAC	0.398													9	19					0	0	0.069234	0	0
WNT5B	81029	broad.mit.edu	37	12	1748941	1748941	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:1748941C>T	uc009zdq.2	+	4	662	c.420C>T	c.(418-420)ACC>ACT	p.T140T	WNT5B_uc001qjj.2_Silent_p.T140T|WNT5B_uc001qjk.2_Silent_p.T140T|WNT5B_uc001qjl.2_Silent_p.T140T	NM_032642	NP_116031	Q9H1J7	WNT5B_HUMAN	wingless-type MMTV integration site family,	140					angiogenesis|anterior/posterior pattern formation|cell migration involved in gastrulation|cellular response to retinoic acid|chondrocyte differentiation|convergent extension involved in axis elongation|convergent extension involved in gastrulation|dorsal/ventral axis specification|endocrine pancreas development|fat cell differentiation|lens fiber cell development|negative regulation of canonical Wnt receptor signaling pathway|neuron differentiation|positive regulation of cell migration|positive regulation of fat cell differentiation|respiratory system development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding			skin(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00109)			AGCTCTCCACCTGCGGCTGCA	0.726													6	21					0	0	0.021553	0	0
FKBP4	2288	broad.mit.edu	37	12	2909631	2909631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:2909631C>T	uc001qkz.2	+	8	1118	c.920C>T	c.(919-921)TCC>TTC	p.S307F		NM_002014	NP_002005	Q02790	FKBP4_HUMAN	FK506 binding protein 52	307	Interaction with tubulin (By similarity).				negative regulation of microtubule polymerization or depolymerization|negative regulation of neuron projection development|protein folding	axonal growth cone|cytosol|membrane|microtubule|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity|protein binding, bridging				0			OV - Ovarian serous cystadenocarcinoma(31;0.00105)		Dimethyl sulfoxide(DB01093)	TCTAGTTTTTCCAATGAGGAA	0.483													10	18					0	0	0.069234	0	0
CHD4	1108	broad.mit.edu	37	12	6697065	6697065	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:6697065G>A	uc001qpo.2	-	24	3680	c.3516C>T	c.(3514-3516)TAC>TAT	p.Y1172Y	CHD4_uc001qpn.2_Silent_p.Y1165Y|CHD4_uc001qpp.2_Silent_p.Y1169Y	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1172	Helicase C-terminal.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TCACAAACCGGTAGATCATTA	0.512													34	32					0	0	0.045705	0	0
CD4	920	broad.mit.edu	37	12	6928051	6928051	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:6928051C>T	uc001qqv.1	+	9	1562	c.1317C>T	c.(1315-1317)CTC>CTT	p.L439L	CD4_uc010sfj.1_Silent_p.L166L|CD4_uc009zfc.1_Silent_p.L260L|CD4_uc010sfk.1_Silent_p.L166L|CD4_uc010sfl.1_Silent_p.L166L|CD4_uc010sfm.1_Silent_p.L166L|GPR162_uc010sfn.1_5'Flank|GPR162_uc001qqw.1_5'Flank|GPR162_uc001qqx.1_5'Flank|GPR162_uc009zfd.1_5'Flank	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	439	Cytoplasmic (Potential).|HIV-1 Vpu-susceptibility domain.			LL->AA: Loss of Nef-induced CD4 down- modulation.	cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				AGAGACTCCTCAGTGAGAAGA	0.403													20	18					0	0	0.062417	0	0
CD163L1	283316	broad.mit.edu	37	12	7527122	7527122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:7527122C>T	uc001qsy.2	-	13	3351	c.3325G>A	c.(3325-3327)GAG>AAG	p.E1109K	CD163L1_uc010sge.1_Missense_Mutation_p.E1119K	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1109	SRCR 10.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AAGTGGGACTCCATTCCTGTG	0.622													30	42					0	0	0.045705	0	0
CD163L1	283316	broad.mit.edu	37	12	7531671	7531671	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:7531671G>A	uc001qsy.2	-	9	2300	c.2274C>T	c.(2272-2274)GGC>GGT	p.G758G	CD163L1_uc010sge.1_Silent_p.G768G	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	758	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CTCCAGTGCAGCCAGAATTCG	0.453													51	46					0	0	0.139131	0	0
DPPA3	359787	broad.mit.edu	37	12	7867913	7867913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:7867913G>A	uc001qtf.2	+	2	295	c.217G>A	c.(217-219)GAA>AAA	p.E73K		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	73						cytoplasm|nucleus					0				Kidney(36;0.0887)		AGTCCTCAGGGAAATCGAAGA	0.473													15	23					0	0	0.119110	0	0
SLC2A14	144195	broad.mit.edu	37	12	7966932	7966933	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:7966932_7966933CC>TT	uc001qtk.2	-	16	2335_2336	c.1542_1543GG>AA	c.(1540-1545)AAGGAG>AAAAAG	p.E515K	SLC2A14_uc001qtl.2_Missense_Mutation_p.E492K|SLC2A14_uc001qtm.2_Missense_Mutation_p.E492K|SLC2A14_uc010sgg.1_Missense_Mutation_p.E406K|SLC2A14_uc001qtn.2_Missense_Mutation_p.E515K|SLC2A14_uc001qto.2_Missense_Mutation_p.E150K|SLC2A14_uc010sgh.1_Missense_Mutation_p.E530K	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	515	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		GTGGTGGTCTCCTTAGCAGGCT	0.55													66	121					0	0	0.115264	0	0
A2ML1	144568	broad.mit.edu	37	12	8993994	8993995	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:8993994_8993995CC>TT	uc001quz.3	+	11	1208_1209	c.1110_1111CC>TT	c.(1108-1113)TTCCTC>TTTTTC	p.L371F	A2ML1_uc001qva.1_5'Flank	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	215						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						ATGACTCCTTCCTCAAGAACCA	0.416													30	41					0	0	0.115264	0	0
KLRA1	10748	broad.mit.edu	37	12	10750678	10750678	+	RNA	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:10750678C>T	uc010shf.1	-	2		c.445G>A			KLRA1_uc010shg.1_RNA|KLRA1_uc009zho.2_RNA|KLRA1_uc009zhn.2_RNA	NM_006611				Homo sapiens Ly-49L (LY49L) mRNA, complete cds.												0						TGAGTATCATCAGGCCTTAAT	0.368													72	132					0	0	0.139131	0	0
APOLD1	81575	broad.mit.edu	37	12	12940208	12940208	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:12940208C>T	uc001rau.3	+	2	546	c.462C>T	c.(460-462)ATC>ATT	p.I154I	DDX47_uc001rav.2_Intron|APOLD1_uc001raw.3_Silent_p.I123I	NM_001130415	NP_001123887	Q96LR9	APLD1_HUMAN	apolipoprotein L domain containing 1 isoform 1	154					angiogenesis|cell differentiation|lipid transport|lipoprotein metabolic process	extracellular region|integral to membrane|plasma membrane	lipid binding			ovary(1)	1		Prostate(47;0.0632)		BRCA - Breast invasive adenocarcinoma(232;0.0338)|GBM - Glioblastoma multiforme(207;0.149)		TGCAGGAGATCGCGGCCACCT	0.677													43	37					0	0	0.092188	0	0
PTPRO	5800	broad.mit.edu	37	12	15636986	15636986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:15636986C>T	uc001rcv.1	+	2	328	c.154C>T	c.(154-156)CCA>TCA	p.P52S	PTPRO_uc001rcw.1_Missense_Mutation_p.P52S|PTPRO_uc001rcu.1_Missense_Mutation_p.P52S	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	52	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				CGTCATCAGTCCAGCATCTGT	0.363													27	45					0	0	0.099896	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21008089	21008089	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:21008089G>T	uc001rek.2	+	3	338	c.212G>T	c.(211-213)GGA>GTA	p.G71V	SLCO1B3_uc001rel.2_Missense_Mutation_p.G71V|SLCO1B3_uc010sil.1_Missense_Mutation_p.G71V|LST-3TM12_uc010sim.1_Missense_Mutation_p.G71V	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	71	Helical; Name=2; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TTAATTGATGGAAGCTTTGAA	0.284													8	13					2.17888e-05	2.29788e-05	0.058154	1	0
ABCC9	10060	broad.mit.edu	37	12	21968756	21968756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:21968756C>T	uc001rfi.1	-	32	3984	c.3964G>A	c.(3964-3966)GAA>AAA	p.E1322K	ABCC9_uc001rfh.2_Missense_Mutation_p.E1322K|ABCC9_uc001rfj.1_Missense_Mutation_p.E1286K	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1322	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGATTATTTTCATATCTGACA	0.398													27	43					0	0	0.116897	0	0
Unknown	0	broad.mit.edu	37	12	31286875	31286875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:31286875C>T	uc010sjy.1	-	19	2620	c.2620G>A	c.(2620-2622)GAA>AAA	p.E874K						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		TCCATTCCTTCATTTGGGCAA	0.393													12	14					0	0	0.049695	0	0
C12orf35	55196	broad.mit.edu	37	12	32145457	32145458	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:32145457_32145458TC>GT	uc001rks.2	+	6	5646_5647	c.5232_5233TC>GT	c.(5230-5235)AGTCCT>AGGTCT	p.1744_1745SP>RS	C12orf35_uc001rkt.2_RNA	NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	1744_1745										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			TTGGTAGCAGTCCTGTAAAATA	0.356													49	123					0	0	0.115264	0	0
C12orf40	283461	broad.mit.edu	37	12	40114940	40114940	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:40114940C>T	uc001rmc.2	+	13	2013	c.1846C>T	c.(1846-1848)CTA>TTA	p.L616L	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	616										ovary(6)	6						ACAGTGTGATCTAATTTCAAA	0.413													30	37					0	0	0.125774	0	0
PDZRN4	29951	broad.mit.edu	37	12	41966269	41966269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:41966269G>A	uc010skn.1	+	10	1159	c.1091G>A	c.(1090-1092)CGA>CAA	p.R364Q	PDZRN4_uc001rmq.3_Missense_Mutation_p.R305Q|PDZRN4_uc009zjz.2_Missense_Mutation_p.R303Q|PDZRN4_uc001rmr.2_Missense_Mutation_p.R190Q	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	563							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				GAAAGCTTGCGAAATGATGAG	0.493													5	15					0	0	0.014758	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967284	41967284	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:41967284C>T	uc010skn.1	+	10	2174	c.2106C>T	c.(2104-2106)ATC>ATT	p.I702I	PDZRN4_uc001rmq.3_Silent_p.I643I|PDZRN4_uc009zjz.2_Silent_p.I641I|PDZRN4_uc001rmr.2_Silent_p.I528I	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	901							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				CACGGTACATCACAAAGAGAC	0.522													30	41					0	0	0.050027	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43821132	43821132	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:43821132C>T	uc010skx.1	-	27	4086	c.4086G>A	c.(4084-4086)TGG>TGA	p.W1362*	ADAMTS20_uc001rno.1_Nonsense_Mutation_p.W480*	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1362	TSP type-1 10.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TTCCGTAGTTCCACTGTGGAC	0.423													21	37					0	0	0.091800	0	0
SLC38A4	55089	broad.mit.edu	37	12	47172136	47172136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:47172136G>A	uc001rpi.2	-	12	1408	c.1009C>T	c.(1009-1011)CCT>TCT	p.P337S	SLC38A4_uc001rpj.2_Missense_Mutation_p.P337S	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	337	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					ACTAGGATAGGAATTGCATAG	0.393													17	18					0	0	0.043863	0	0
COL2A1	1280	broad.mit.edu	37	12	48368607	48368607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:48368607C>T	uc001rqu.2	-	52	4106	c.3925G>A	c.(3925-3927)GAC>AAC	p.D1309N	COL2A1_uc001rqt.2_Missense_Mutation_p.D90N|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.D1240N	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	1309	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	TTCATGGCGTCCAAGGTGCAG	0.552													32	61					0	0	0.086207	0	0
CACNB3	784	broad.mit.edu	37	12	49220860	49220860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:49220860C>T	uc001rsl.1	+	12	1295	c.1094C>T	c.(1093-1095)CCT>CTT	p.P365L	CACNB3_uc010sly.1_Missense_Mutation_p.P352L|CACNB3_uc010slz.1_Missense_Mutation_p.P364L|CACNB3_uc001rsk.1_Missense_Mutation_p.P212L	NM_000725	NP_000716	P54284	CACB3_HUMAN	calcium channel, voltage-dependent, beta 3	365					axon guidance|membrane depolarization|synaptic transmission	cytosol|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0					Verapamil(DB00661)	CACCCAGCCCCTGGCCCCGGA	0.597													42	77					0	0	0.124865	0	0
PRPF40B	25766	broad.mit.edu	37	12	50037688	50037688	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:50037688G>A	uc001rur.1	+	24	2488	c.2424G>A	c.(2422-2424)AAG>AAA	p.K808K	FMNL3_uc001ruv.1_3'UTR|FMNL3_uc001ruw.1_3'UTR|PRPF40B_uc001ruq.1_Silent_p.K795K|PRPF40B_uc001rus.1_Silent_p.K750K|FMNL3_uc001rut.1_3'UTR|FMNL3_uc001ruu.1_3'UTR	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	808					mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						AAGCTGGCAAGGAGAGCGATG	0.542													10	34					0	0	0.058154	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50186345	50186346	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:50186345_50186346GG>AA	uc009zlk.2	-	12	3877_3878	c.3675_3676CC>TT	c.(3673-3678)ACCCCT>ACTTCT	p.P1226S	NCKAP5L_uc001rvc.3_Missense_Mutation_p.P430S|NCKAP5L_uc001rvb.2_Missense_Mutation_p.P819S	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	1222	Pro-rich.									central_nervous_system(1)	1						TGGACAGGAGGGGTGGGGCCTG	0.649													19	31					0	0	0.115264	0	0
SCN8A	6334	broad.mit.edu	37	12	52200262	52200262	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:52200262C>T	uc001ryw.2	+	27	5170	c.4992C>T	c.(4990-4992)ATC>ATT	p.I1664I		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1664	IV.|Helical; Name=S5 of repeat IV; (Potential).				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TCATGTTCATCTTCTCCATTT	0.473													48	69					0	0	0.139131	0	0
SCN8A	6334	broad.mit.edu	37	12	52200631	52200631	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:52200631C>T	uc001ryw.2	+	27	5539	c.5361C>T	c.(5359-5361)ACC>ACT	p.T1787T		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1787	IV.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	ACTTTGAGACCTTCTATGAGA	0.498													50	69					0	0	0.139131	0	0
KRT6A	3853	broad.mit.edu	37	12	52886924	52886924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:52886924C>T	uc001sam.2	-	1	258	c.49G>A	c.(49-51)GGT>AGT	p.G17S		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	17	Head.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCACTGAAACCCCGGCGGCTG	0.652													19	42					0	0	0.049695	0	0
SOAT2	8435	broad.mit.edu	37	12	53512693	53512693	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:53512693A>T	uc001sbv.2	+	9	971	c.883A>T	c.(883-885)AAT>TAT	p.N295Y	SOAT2_uc009zms.2_Intron	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	295					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						TGTCAGGTGGAATTATGTGGC	0.547													29	51					0	0	0.080422	0	0
NFE2	4778	broad.mit.edu	37	12	54686866	54686866	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:54686866G>A	uc009znk.2	-	2	924	c.414C>T	c.(412-414)CCC>CCT	p.P138P	NFE2_uc001sfq.2_Silent_p.P138P|NFE2_uc001sfr.3_Silent_p.P138P|NFE2_uc009znl.2_Silent_p.P138P	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	138	Transactivation domain.				blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						GGTCTTCTTGGGGCTTAGGTG	0.597													33	62					0	0	0.059317	0	0
OR6C2	341416	broad.mit.edu	37	12	55846693	55846693	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:55846693G>A	uc001sgz.1	+	1	696	c.696G>A	c.(694-696)AGG>AGA	p.R232R		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TTCAGCAAAGGAAAAAGGCCT	0.413													55	67					0	0	0.139131	0	0
OR6C70	390327	broad.mit.edu	37	12	55863029	55863029	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:55863029G>A	uc010spn.1	-	1	894	c.894C>T	c.(892-894)GCC>GCT	p.A298A		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CAGCTTTGAAGGCTTGTTTAA	0.328													20	33					0	0	0.076483	0	0
RASSF9	9182	broad.mit.edu	37	12	86199418	86199418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:86199418G>A	uc001taf.1	-	2	709	c.370C>T	c.(370-372)CCT>TCT	p.P124S		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	124					endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						CGCCACAAAGGAACTGGAAGA	0.438													70	106					0	0	0.139131	0	0
ATP2B1	490	broad.mit.edu	37	12	90018083	90018083	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:90018083C>T	uc001tbh.2	-	8	1402	c.1221G>A	c.(1219-1221)GAG>GAA	p.E407E	ATP2B1_uc001tbg.2_Silent_p.E407E|ATP2B1_uc001tbf.2_Silent_p.E77E	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	407	Extracellular (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TTGGTGTGCACTCAGCAAGCC	0.398													15	31					0	0	0.038395	0	0
ATP2B1	490	broad.mit.edu	37	12	90018085	90018085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:90018085C>T	uc001tbh.2	-	8	1400	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K	ATP2B1_uc001tbg.2_Missense_Mutation_p.E407K|ATP2B1_uc001tbf.2_Missense_Mutation_p.E77K	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	407	Extracellular (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						GGTGTGCACTCAGCAAGCCAT	0.393													15	32					0	0	0.038395	0	0
FGD6	55785	broad.mit.edu	37	12	95488388	95488388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:95488388G>A	uc001tdp.3	-	15	3804	c.3580C>T	c.(3580-3582)CCT>TCT	p.P1194S	FGD6_uc009zsx.2_Missense_Mutation_p.P327S|FGD6_uc001tdq.1_Missense_Mutation_p.P230S	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	1194					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CTCCTACTAGGACAGAAGGTG	0.393													40	51					0	0	0.111260	0	0
NTN4	59277	broad.mit.edu	37	12	96104261	96104261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:96104261G>A	uc001tei.2	-	5	1587	c.1138C>T	c.(1138-1140)CGT>TGT	p.R380C	NTN4_uc009ztf.2_Missense_Mutation_p.R380C|NTN4_uc009ztg.2_Missense_Mutation_p.R343C	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	380	Laminin EGF-like 2.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CGCAGGTCACGATAGAAGCCT	0.488													26	23					0	0	0.125774	0	0
HAL	3034	broad.mit.edu	37	12	96370260	96370260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:96370260G>A	uc001tem.1	-	20	2077	c.1780C>T	c.(1780-1782)CGC>TGC	p.R594C	HAL_uc009zti.1_RNA|HAL_uc010suw.1_Missense_Mutation_p.R386C|HAL_uc010sux.1_Intron	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	594					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	GCCATGAAGCGATCTTTTATC	0.512													32	43					0	0	0.144211	0	0
ELK3	2004	broad.mit.edu	37	12	96640771	96640771	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:96640771C>T	uc001teo.1	+	3	540	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_005230	NP_005221	P41970	ELK3_HUMAN	ELK3 protein	87					negative regulation of transcription, DNA-dependent|signal transduction	mitochondrion	protein binding|purine-rich negative regulatory element binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	all_cancers(2;0.00173)					TTGTCTCTTTCCCGGAGATCC	0.532													21	31					0	0	0.099896	0	0
SCYL2	55681	broad.mit.edu	37	12	100707242	100707242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:100707242G>A	uc001thn.2	+	7	945	c.895G>A	c.(895-897)GAA>AAA	p.E299K	SCYL2_uc009ztw.1_Missense_Mutation_p.E126K|SCYL2_uc001thm.1_Missense_Mutation_p.E299K	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	299	Protein kinase.				endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						TATACCTGAGGAAGTTCGTGA	0.328													12	31					0	0	0.105934	0	0
NR1H4	9971	broad.mit.edu	37	12	100934464	100934464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:100934464G>A	uc001tht.1	+	7	1004	c.976G>A	c.(976-978)GAC>AAC	p.D326N	NR1H4_uc001thp.1_Missense_Mutation_p.D312N|NR1H4_uc001thq.1_Missense_Mutation_p.D316N|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.D316N|NR1H4_uc010svk.1_Missense_Mutation_p.D265N|NR1H4_uc001ths.1_Missense_Mutation_p.D322N	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	326	Ligand-binding.				bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TCAGACTTTGGACCATGAAGA	0.383													24	45					0	0	0.116897	0	0
UTP20	27340	broad.mit.edu	37	12	101763530	101763530	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:101763530G>A	uc001tia.1	+	49	6572	c.6416G>A	c.(6415-6417)TGG>TAG	p.W2139*		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	2139					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						TGCCTCATCTGGGTCTTGAGG	0.493													64	86					0	0	0.139131	0	0
C12orf42	374470	broad.mit.edu	37	12	103695950	103695950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:103695950C>T	uc001tjt.2	-	6	1107	c.1019G>A	c.(1018-1020)CGG>CAG	p.R340Q	C12orf42_uc001tjs.2_Intron|C12orf42_uc009zuf.1_Missense_Mutation_p.R340Q|C12orf42_uc001tju.2_Missense_Mutation_p.R245Q	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	340										ovary(1)|central_nervous_system(1)	2						ATGGAAACGCCGGGTTGGGCG	0.592													25	69					0	0	0.045705	0	0
STAB2	55576	broad.mit.edu	37	12	104100699	104100699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:104100699G>A	uc001tjw.2	+	38	4312	c.4126G>A	c.(4126-4128)GAG>AAG	p.E1376K		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1376	Extracellular (Potential).|Laminin EGF-like 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGAGTGTGGGGAGGGCTTCAG	0.597													14	21					0	0	0.105934	0	0
POLR3B	55703	broad.mit.edu	37	12	106889893	106889893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:106889893C>T	uc001tlp.2	+	24	2996	c.2774C>T	c.(2773-2775)CCG>CTG	p.P925L	POLR3B_uc001tlq.2_Missense_Mutation_p.P867L	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	925					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						GGCATCTGTCCGGACATCATC	0.493													50	87					0	0	0.139131	0	0
WSCD2	9671	broad.mit.edu	37	12	108589759	108589759	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:108589759G>A	uc001tms.2	+	2	894	c.150G>A	c.(148-150)GCG>GCA	p.A50A	WSCD2_uc001tmt.2_Silent_p.A50A	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	50						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						GGAACCAGGCGAACCCCGCTG	0.607													54	89					0	0	0.139131	0	0
TMEM119	338773	broad.mit.edu	37	12	108985566	108985566	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:108985566C>T	uc001tng.2	-	2	757	c.594G>A	c.(592-594)AGG>AGA	p.R198R	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	198	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						CCTCCACCATCCTGGCTCCGT	0.687													18	21					0	0	0.043863	0	0
TMEM119	338773	broad.mit.edu	37	12	108985776	108985776	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:108985776G>A	uc001tng.2	-	2	547	c.384C>T	c.(382-384)TAC>TAT	p.Y128Y	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	128	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						AGGACGATGGGTAATAGGCCG	0.527													11	12					0	0	0.069234	0	0
OAS1	4938	broad.mit.edu	37	12	113346385	113346385	+	Missense_Mutation	SNP	C	A	A	rs142809544		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:113346385C>A	uc001tud.2	+	2	331	c.225C>A	c.(223-225)GAC>GAA	p.D75E	OAS1_uc010syn.1_Missense_Mutation_p.D74E|OAS1_uc010syo.1_Missense_Mutation_p.D74E|OAS1_uc001tub.2_Missense_Mutation_p.D75E|OAS1_uc001tuc.2_Missense_Mutation_p.D75E|OAS1_uc009zwf.2_Missense_Mutation_p.D74E	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	75				D->A: Loss of activity; when associated with A-77.	interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						GCCGATCTGACGCTGACCTGG	0.498													19	39					1.96292e-10	2.07513e-10	0.055883	1	0
NOS1	4842	broad.mit.edu	37	12	117749355	117749355	+	Silent	SNP	C	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:117749355C>A	uc001twm.1	-	3	1454	c.768G>T	c.(766-768)GTG>GTT	p.V256V		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	256					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGTCGTTCTCCACGCCGAGGG	0.557													24	38					3.28513e-13	3.47572e-13	0.091800	1	0
KSR2	283455	broad.mit.edu	37	12	117962980	117962980	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:117962980G>A	uc001two.2	-	14	1864	c.1809C>T	c.(1807-1809)TTC>TTT	p.F603F		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	632					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCATCTCCTCGAAGTCATCCT	0.597													19	17					0	0	0.043863	0	0
CIT	11113	broad.mit.edu	37	12	120128034	120128035	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:120128034_120128035GG>AA	uc001txi.1	-	46	6034_6035	c.5981_5982CC>TT	c.(5980-5982)CCC>CTT	p.P1994L	CIT_uc001txh.1_Missense_Mutation_p.P1512L|CIT_uc001txj.1_Missense_Mutation_p.P2036L	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1994					intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		ACAGCCTCCCGGGGGACCGCTC	0.703													12	14					0	0	0.115264	0	0
GCN1L1	10985	broad.mit.edu	37	12	120575018	120575018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:120575018G>A	uc001txo.2	-	50	6782	c.6769C>T	c.(6769-6771)CCG>TCG	p.P2257S		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2257					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACCTTCTTCGGGAGGCAGAAT	0.607													40	54					0	0	0.117977	0	0
GCN1L1	10985	broad.mit.edu	37	12	120582844	120582845	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:120582844_120582845CC>TT	uc001txo.2	-	40	5050_5051	c.5037_5038GG>AA	c.(5035-5040)AAGGCC>AAAACC	p.A1680T		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1680	HEAT 12.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCCCCAAGGGCCTTTGCAGATA	0.574													17	35					0	0	0.115264	0	0
DNAH10	196385	broad.mit.edu	37	12	124315175	124315175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:124315175G>A	uc001uft.3	+	25	4145	c.4120G>A	c.(4120-4122)GAA>AAA	p.E1374K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1374	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GTTTGCTATGGAACTGCACAA	0.403													26	32					0	0	0.083992	0	0
BRI3BP	140707	broad.mit.edu	37	12	125509639	125509639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:125509639C>T	uc001uha.1	+	3	562	c.419C>T	c.(418-420)TCC>TTC	p.S140F		NM_080626	NP_542193	Q8WY22	BRI3B_HUMAN	BRI3-binding protein	140	Helical; (Potential).					integral to membrane|mitochondrial outer membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.35e-05)|Epithelial(86;0.000426)|all cancers(50;0.00576)		TGGTTCTTGTCCCTGACCCTG	0.627													29	39					0	0	0.134883	0	0
EP400	57634	broad.mit.edu	37	12	132522282	132522282	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:132522282C>T	uc001ujn.2	+	30	6042	c.6007C>T	c.(6007-6009)CTG>TTG	p.L2003L	EP400_uc001ujl.2_Silent_p.L2002L|EP400_uc001ujm.2_Silent_p.L1922L	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2039	Helicase C-terminal.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		AACTAAAGATCTGATCCGAGA	0.443													14	29					0	0	0.132662	0	0
CHFR	55743	broad.mit.edu	37	12	133434019	133434019	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:133434019G>A	uc001ulf.2	-	9	1158	c.1074C>T	c.(1072-1074)CTC>CTT	p.L358L	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Silent_p.L346L|CHFR_uc010tbs.1_Silent_p.L358L|CHFR_uc001uld.2_Silent_p.L317L|CHFR_uc010tbt.1_Silent_p.L266L	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	358					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		ATGCTTCCACGAGGTTGTTGA	0.632													22	37					0	0	0.076483	0	0
TPTE2	93492	broad.mit.edu	37	13	19997296	19997296	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:19997296A>T	uc001umd.2	-	21	1686	c.1475T>A	c.(1474-1476)CTA>CAA	p.L492Q	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.L381Q|TPTE2_uc001ume.2_Missense_Mutation_p.L415Q|TPTE2_uc009zzm.2_Missense_Mutation_p.L163Q|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.L163Q	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	492	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ATTTCTTGGTAGACAAAGCCT	0.363													5	21					0	0	0.014758	0	0
SGCG	6445	broad.mit.edu	37	13	23777974	23777974	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:23777974C>T	uc001uom.2	+	2	296	c.141C>T	c.(139-141)CTC>CTT	p.L47L	SGCG_uc009zzv.2_Silent_p.L47L|SGCG_uc009zzw.2_Silent_p.L47L	NM_000231	NP_000222	Q13326	SGCG_HUMAN	gamma sarcoglycan	47	Helical; Signal-anchor for type II membrane protein; (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0		all_cancers(29;4.34e-23)|all_epithelial(30;4.4e-19)|all_lung(29;2.45e-18)|Lung SC(185;0.0228)|Breast(139;0.188)		all cancers(112;0.00255)|Epithelial(112;0.0129)|OV - Ovarian serous cystadenocarcinoma(117;0.0365)|Lung(94;0.205)		TCATCATCCTCGTTGTGAATT	0.368													18	54					0	0	0.049695	0	0
SGCG	6445	broad.mit.edu	37	13	23869576	23869576	+	Silent	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:23869576A>G	uc001uom.2	+	6	683	c.528A>G	c.(526-528)GAA>GAG	p.E176E	SGCG_uc009zzv.2_Silent_p.E176E|SGCG_uc009zzw.2_Silent_p.E176E	NM_000231	NP_000222	Q13326	SGCG_HUMAN	gamma sarcoglycan	176	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0		all_cancers(29;4.34e-23)|all_epithelial(30;4.4e-19)|all_lung(29;2.45e-18)|Lung SC(185;0.0228)|Breast(139;0.188)		all cancers(112;0.00255)|Epithelial(112;0.0129)|OV - Ovarian serous cystadenocarcinoma(117;0.0365)|Lung(94;0.205)		CTCTTTTTGAACATTCAGTGG	0.388													58	76					0	0	0.139131	0	0
SACS	26278	broad.mit.edu	37	13	23915199	23915199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:23915199G>A	uc001uon.2	-	10	3405	c.2816C>T	c.(2815-2817)TCC>TTC	p.S939F	SACS_uc001uoo.2_Missense_Mutation_p.S792F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	939					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TGTATAAGAGGAAATTCCCTG	0.363													15	39					0	0	0.033300	0	0
MTIF3	219402	broad.mit.edu	37	13	28014234	28014234	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:28014234G>A	uc001urh.2	-	1	1576	c.352C>T	c.(352-354)CAA>TAA	p.Q118*	MTIF3_uc001uri.2_Nonsense_Mutation_p.Q118*|MTIF3_uc001urj.2_Nonsense_Mutation_p.Q118*|MTIF3_uc001urk.2_Nonsense_Mutation_p.Q118*	NM_152912	NP_690876	Q9H2K0	IF3M_HUMAN	mitochondrial translational initiation factor 3	118					regulation of translational initiation|ribosome disassembly	mitochondrion	ribosomal small subunit binding|translation initiation factor activity			ovary(1)|skin(1)	2		Lung SC(185;0.0161)	Colorectal(13;0.00042)|READ - Rectum adenocarcinoma(15;0.105)	all cancers(112;0.108)|OV - Ovarian serous cystadenocarcinoma(117;0.157)		GTGTTCCTTTGAACCAGTCGC	0.502													27	45					0	0	0.108266	0	0
EEF1DP3	196549	broad.mit.edu	37	13	32527498	32527498	+	RNA	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:32527498C>G	uc001utu.2	+	4		c.1256C>G			EEF1DP3_uc010tdv.1_Intron|uc001utv.2_RNA					Homo sapiens similar to hypothetical protein FLJ20897, mRNA (cDNA clone IMAGE:5267252).												0						TCAACAAGATCTGGCCTGAGT	0.478													18	24					0	0	0.055883	0	0
FRY	10129	broad.mit.edu	37	13	32722017	32722017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:32722017C>T	uc001utx.2	+	13	1821	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	442					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CCCAAAGGGTCCCGCGGTGTG	0.463													56	54					0	0	0.139131	0	0
FRY	10129	broad.mit.edu	37	13	32745367	32745367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:32745367G>A	uc001utx.2	+	18	2607	c.2111G>A	c.(2110-2112)GGA>GAA	p.G704E	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	704					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CAGACACAAGGAAAAGTCTAT	0.368													24	19					0	0	0.076483	0	0
BRCA2	675	broad.mit.edu	37	13	32918762	32918762	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:32918762C>T	uc001uub.1	+	12	7136	c.6909C>T	c.(6907-6909)TCC>TCT	p.S2303S		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2303					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AAGAAAAATCCTTAAAGGCTT	0.249			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			16	26					0	0	0.033300	0	0
PDS5B	23047	broad.mit.edu	37	13	33344523	33344523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:33344523C>T	uc010abf.2	+	32	4047	c.3889C>T	c.(3889-3891)CTT>TTT	p.L1297F	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	1297	A.T hook 2.				cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		ACCAAAACCTCTTGGTGGAGG	0.423													14	20					0	0	0.132662	0	0
STARD13	90627	broad.mit.edu	37	13	33684994	33684994	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:33684994C>T	uc001uuw.2	-	11	2784	c.2658G>A	c.(2656-2658)GAG>GAA	p.E886E	STARD13_uc001uuu.2_Silent_p.E878E|STARD13_uc001uuv.2_Silent_p.E768E|STARD13_uc001uux.2_Silent_p.E851E|STARD13_uc010tec.1_RNA	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	886					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		GCACGTGGATCTCAGCCTCCA	0.547													26	21					0	0	0.144211	0	0
NBEA	26960	broad.mit.edu	37	13	35692402	35692402	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:35692402T>C	uc001uvb.2	+	16	2326	c.2120T>C	c.(2119-2121)TTA>TCA	p.L707S		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	707						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CAGAGTATATTAAATTACCTA	0.234													2	4					0	0	0.115264	0	0
FOXO1	2308	broad.mit.edu	37	13	41134157	41134158	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:41134157_41134158CC>TT	uc001uxl.3	-	2	1855_1856	c.1470_1471GG>AA	c.(1468-1473)CGGGTT>CGAATT	p.V491I	FOXO1_uc010acc.1_Missense_Mutation_p.V306I	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	491					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		TGGCCCAGAACCCGGCTGTTGG	0.53													15	27					0	0	0.115264	0	0
AKAP11	11215	broad.mit.edu	37	13	42875638	42875638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:42875638C>T	uc001uys.1	+	8	2931	c.2756C>T	c.(2755-2757)TCC>TTC	p.S919F		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	919					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		CCTCCATTTTCCCACTGTGAT	0.358													18	20					0	0	0.043863	0	0
RB1	5925	broad.mit.edu	37	13	48953759	48953760	+	Nonsense_Mutation	DNP	CC	TT	TT	rs121913302		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:48953759_48953760CC>TT	uc001vcb.2	+	14	1528_1529	c.1362_1363CC>TT	c.(1360-1365)TACCGA>TATTGA	p.R455*		NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1	455	Domain A.|Pocket; binds T and E1A.				androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(7)|p.R455*(7)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GCTTGTATTACCGAGTAATGGA	0.203		6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			5	6					0	0	0.115264	0	0
RB1	5925	broad.mit.edu	37	13	49027168	49027168	+	Nonsense_Mutation	SNP	C	T	T	rs121913305		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:49027168C>T	uc001vcb.2	+	18	1901	c.1735C>T	c.(1735-1737)CGA>TGA	p.R579*		NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1	579	Domain A.|Pocket; binds T and E1A.				androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(6)|p.R579*(4)|p.R579fs*29(1)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ATCAAAGGACCGAGAAGGACC	0.338	R579*(SW1783_CENTRAL_NERVOUS_SYSTEM)	6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			19	38					0	0	0.038395	0	0
SERPINE3	647174	broad.mit.edu	37	13	51918420	51918420	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:51918420T>G	uc001vfh.2	+	2	349	c.289T>G	c.(289-291)TAT>GAT	p.Y97D	SERPINE3_uc010tgp.1_Missense_Mutation_p.Y97D	NM_001101320	NP_001094790	A8MV23	SERP3_HUMAN	nexin-related serine protease inhibitor	97					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)	2						GCATGCTGTTTATGCCACACT	0.507													13	29					0	0	0.132662	0	0
KLHL1	57626	broad.mit.edu	37	13	70281842	70281842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:70281842C>T	uc001vip.2	-	10	2896	c.2102G>A	c.(2101-2103)AGA>AAA	p.R701K	KLHL1_uc010thm.1_Missense_Mutation_p.R640K	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	701	Kelch 6.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		AGCATATAATCTGTCACCAAG	0.438													19	26					0	0	0.038395	0	0
FBXL3	26224	broad.mit.edu	37	13	77595986	77595986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:77595986C>T	uc001vkd.2	-	2	381	c.10G>A	c.(10-12)GGA>AGA	p.G4R		NM_012158	NP_036290	Q9UKT7	FBXL3_HUMAN	F-box and leucine-rich repeat protein 3	4					regulation of circadian rhythm|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.218)		GBM - Glioblastoma multiforme(99;0.0521)		TCTCTTCCTCCTCGTTTCATC	0.378													43	57					0	0	0.111260	0	0
RNF219	79596	broad.mit.edu	37	13	79191232	79191232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:79191232G>A	uc001vkw.1	-	6	723	c.664C>T	c.(664-666)CTT>TTT	p.L222F	uc001vku.1_RNA|RNF219_uc010afb.1_Missense_Mutation_p.L32F|RNF219_uc010afc.2_Intron	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	222	Potential.						zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		TTGGACTGAAGAGCAGCAACT	0.393													28	37					0	0	0.144211	0	0
GPC5	2262	broad.mit.edu	37	13	92797119	92797119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:92797119G>A	uc010tif.1	+	7	1804	c.1438G>A	c.(1438-1440)GAA>AAA	p.E480K		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	480						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TGACAAGTGGGAACTTCTTCA	0.428													14	24					0	0	0.132662	0	0
NALCN	259232	broad.mit.edu	37	13	101712206	101712206	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:101712206C>T	uc001vox.1	-	42	5058	c.4869G>A	c.(4867-4869)ACG>ACA	p.T1623T		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1623	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TGTTGGCATTCGTGTCCTCAC	0.542													27	47					0	0	0.116897	0	0
ITGBL1	9358	broad.mit.edu	37	13	102344979	102344979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:102344979C>T	uc001vpb.2	+	8	1279	c.1060C>T	c.(1060-1062)CGC>TGC	p.R354C	ITGBL1_uc010agb.2_Missense_Mutation_p.R305C|ITGBL1_uc001vpc.3_Missense_Mutation_p.R213C	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	354	VII.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCCAGGAGATCGCCGGGTGTA	0.488													39	61					0	0	0.074837	0	0
TPP2	7174	broad.mit.edu	37	13	103266516	103266516	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:103266516C>T	uc001vpi.3	+	3	463	c.360C>T	c.(358-360)TTC>TTT	p.F120F		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	120					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GCTATGACTTCTATCCTAAGG	0.373													22	29					0	0	0.116897	0	0
SLC10A2	6555	broad.mit.edu	37	13	103718588	103718588	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:103718588C>T	uc001vpy.3	-	1	609	c.12G>A	c.(10-12)CCG>CCA	p.P4P		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	4	Extracellular (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CACAGCTGTTCGGATCATTCA	0.517													26	38					0	0	0.108266	0	0
MYO16	23026	broad.mit.edu	37	13	109793523	109793523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:109793523C>T	uc001vqt.1	+	32	5023	c.4897C>T	c.(4897-4899)CCC>TCC	p.P1633S	MYO16_uc010agk.1_Missense_Mutation_p.P1655S	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1633	Pro-rich.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CAGCTCCTTCCCCAAGATCCC	0.716													13	19					0	0	0.146539	0	0
MYO16	23026	broad.mit.edu	37	13	109817354	109817354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:109817354C>T	uc001vqt.1	+	33	5330	c.5204C>T	c.(5203-5205)TCT>TTT	p.S1735F	MYO16_uc010agk.1_Missense_Mutation_p.S1757F	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1735					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			ATTCAGTTATCTAATTCACTA	0.348													21	17					0	0	0.069288	0	0
CARKD	55739	broad.mit.edu	37	13	111287046	111287046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:111287046C>T	uc001vrb.2	+	7	588	c.574C>T	c.(574-576)CCG>TCG	p.P192S	CARKD_uc010tji.1_3'UTR|CARKD_uc010tjj.1_Missense_Mutation_p.P174S|CARKD_uc001vqz.2_RNA|CARKD_uc001vra.2_RNA|CARKD_uc010tjk.1_Missense_Mutation_p.P82S|CARKD_uc010tjl.1_Missense_Mutation_p.P61S|CARKD_uc001vrc.2_Missense_Mutation_p.P192S			Q8IW45	CARKD_HUMAN	RecName: Full=Carbohydrate kinase domain-containing protein; Flags: Precursor;	192	YjeF C-terminal.									skin(1)	1						CGCTCAGCAGCCGGCCCTCAT	0.617													14	20					0	0	0.119110	0	0
PCID2	55795	broad.mit.edu	37	13	113852557	113852557	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr13:113852557A>C	uc010tju.1	-	3	229	c.148T>G	c.(148-150)TGT>GGT	p.C50G	PCID2_uc010tjv.1_Missense_Mutation_p.C50G|PCID2_uc010tjw.1_Missense_Mutation_p.C50G|PCID2_uc001vte.2_5'UTR|PCID2_uc001vtd.2_5'UTR|PCID2_uc001vtf.2_5'UTR|PCID2_uc001vtg.1_RNA	NM_001127203	NP_001120675	Q5JVF3	PCID2_HUMAN	PCI domain containing 2	50					negative regulation of apoptosis|negative regulation of cysteine-type endopeptidase activity|positive regulation of mitotic cell cycle spindle assembly checkpoint|positive regulation of transcription, DNA-dependent|regulation of mRNA stability|spleen development		protein binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.216)|all_epithelial(44;0.234)	all cancers(43;0.104)			ACTTGTTGACACTTCTCCTCT	0.358													51	67					0	0	0.139131	0	0
OR4N2	390429	broad.mit.edu	37	14	20296115	20296115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:20296115G>A	uc010tkv.1	+	1	508	c.508G>A	c.(508-510)GGC>AGC	p.G170S		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCCTTTTTGTGGCCCAAACCA	0.522													49	83					0	0	0.139131	0	0
OR4K15	81127	broad.mit.edu	37	14	20444710	20444710	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:20444710C>T	uc010tkx.1	+	1	1033	c.1033C>T	c.(1033-1035)CTA>TTA	p.L345L		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	345	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGTTCTTTTCCTAGAAACAAA	0.388													7	14					0	0	0.058154	0	0
TEP1	7011	broad.mit.edu	37	14	20851703	20851703	+	Silent	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:20851703A>G	uc001vxe.2	-	26	3851	c.3811T>C	c.(3811-3813)TTA>CTA	p.L1271L	TEP1_uc010ahk.2_Silent_p.L621L|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Silent_p.L1163L|TEP1_uc010tlh.1_5'Flank	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1271	NACHT.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TGGTCCACTAACCTATCAGCC	0.602													19	23					0	0	0.043863	0	0
FLJ10357	55701	broad.mit.edu	37	14	21542561	21542562	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:21542561_21542562CC>TT	uc001vzp.2	+	3	701_702	c.672_673CC>TT	c.(670-675)ACCCGG>ACTTGG	p.R225W	FLJ10357_uc001vzn.1_Missense_Mutation_p.R225W|FLJ10357_uc001vzo.1_Intron|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_5'UTR	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	225					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		CGCTGGGTACCCGGAGTCCTGG	0.634													7	8					0	0	0.115264	0	0
OR5AU1	390445	broad.mit.edu	37	14	21623343	21623343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:21623343G>A	uc010tlp.1	-	1	842	c.842C>T	c.(841-843)TCG>TTG	p.S281L		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	281	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		GCCCTGGGCCGAGCTCATTTT	0.488													10	19					0	0	0.069234	0	0
OR5AU1	390445	broad.mit.edu	37	14	21623768	21623769	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:21623768_21623769CT>TA	uc010tlp.1	-	1	416_417	c.416_417AG>TA	c.(415-417)AAG>ATA	p.K139I		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	139	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		TCACTTTCCTCTTGGCCAAGAA	0.52													17	33					0	0	0.115264	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21793025	21793025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:21793025G>A	uc001wag.2	+	14	2011	c.2011G>A	c.(2011-2013)GGG>AGG	p.G671R	RPGRIP1_uc001wah.2_Missense_Mutation_p.G313R|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001waj.1_Missense_Mutation_p.G136R|RPGRIP1_uc001wak.2_Missense_Mutation_p.G146R|RPGRIP1_uc010aim.2_Missense_Mutation_p.G54R|RPGRIP1_uc001wal.2_Intron|RPGRIP1_uc001wam.2_5'UTR	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	671					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		ATTATCTGTGGGGCCACAGCC	0.507													68	101					0	0	0.139131	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21796672	21796672	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:21796672G>A	uc001wag.2	+	18	2985	c.2985G>A	c.(2983-2985)AAG>AAA	p.K995K	RPGRIP1_uc001wah.2_Silent_p.K637K|RPGRIP1_uc001wai.2_Silent_p.K321K|RPGRIP1_uc001wak.2_Silent_p.K470K|RPGRIP1_uc010aim.2_Silent_p.K378K|RPGRIP1_uc001wal.2_Silent_p.K354K|RPGRIP1_uc001wam.2_Silent_p.K312K	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	995	Interaction with RPGR.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		GAAAGGAGAAGGAGCACCAGG	0.423													26	39					0	0	0.108266	0	0
C14orf21	161424	broad.mit.edu	37	14	24769901	24769901	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:24769901C>T	uc001wol.1	+	2	598	c.535C>T	c.(535-537)CTG>TTG	p.L179L	C14orf21_uc001wom.1_5'Flank|DHRS1_uc001woj.1_5'Flank|DHRS1_uc001wok.2_5'Flank	NM_174913	NP_777573	Q86U38	CN021_HUMAN	hypothetical protein LOC161424	179							RNA binding			breast(2)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(265;0.0185)		CACGGAGACCCTGGAGGAGCT	0.468													39	73					0	0	0.104719	0	0
HECTD1	25831	broad.mit.edu	37	14	31578782	31578782	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:31578782G>A	uc001wrc.1	-	36	6790	c.6301C>T	c.(6301-6303)CGA>TGA	p.R2101*	HECTD1_uc001wra.1_Nonsense_Mutation_p.R227*|HECTD1_uc001wrb.1_Nonsense_Mutation_p.R227*	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	2101	K-box.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		GCTTCACGTCGGTTCTGTAAC	0.433													9	14					0	0	0.047766	0	0
KIAA0391	9692	broad.mit.edu	37	14	35593368	35593368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:35593368C>T	uc001wsy.1	+	2	1277	c.917C>T	c.(916-918)TCA>TTA	p.S306L	KIAA0391_uc010tps.1_Missense_Mutation_p.S211L|KIAA0391_uc001wsz.1_Missense_Mutation_p.S306L|KIAA0391_uc001wta.2_RNA|KIAA0391_uc001wtb.1_Missense_Mutation_p.S306L|KIAA0391_uc001wtc.1_Intron|PPP2R3C_uc001wss.2_5'Flank|PPP2R3C_uc001wst.2_5'Flank|PPP2R3C_uc010tpr.1_5'Flank|PPP2R3C_uc001wsu.2_5'Flank|PPP2R3C_uc010amn.1_5'Flank|PPP2R3C_uc001wsw.2_5'Flank|PPP2R3C_uc001wsx.1_5'Flank	NM_014672	NP_055487	O15091	MRRP3_HUMAN	mitochondrial RNase P protein 3 precursor	306					tRNA processing	mitochondrion					0	Breast(36;0.0545)|Hepatocellular(127;0.158)|Prostate(35;0.184)		Lung(238;2.93e-05)|LUAD - Lung adenocarcinoma(48;3.86e-05)|Epithelial(34;0.0114)|all cancers(34;0.0277)	GBM - Glioblastoma multiforme(112;0.0593)		GATATTCTTTCATATCTAAGA	0.284													14	23					0	0	0.146539	0	0
NFKBIA	4792	broad.mit.edu	37	14	35872465	35872465	+	Silent	SNP	G	A	A	rs141298006		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:35872465G>A	uc001wtf.3	-	3	548	c.438C>T	c.(436-438)ACC>ACT	p.T146T	NFKBIA_uc001wte.3_Silent_p.T56T|NFKBIA_uc001wtg.3_Silent_p.T146T|NFKBIA_uc010amo.2_RNA	NM_020529	NP_065390	P25963	IKBA_HUMAN	nuclear factor of kappa light polypeptide gene	146	ANK 3.				anti-apoptosis|apoptosis|cellular response to cold|cytoplasmic sequestering of NF-kappaB|innate immune response|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of DNA binding|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of NF-kappaB transcription factor activity|nerve growth factor receptor signaling pathway|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|I-kappaB/NF-kappaB complex|nucleus|plasma membrane	identical protein binding|NF-kappaB binding|nuclear localization sequence binding|ubiquitin protein ligase binding			breast(2)	2	Breast(36;0.0484)|Hepatocellular(127;0.158)		Lung(238;9.25e-06)|LUAD - Lung adenocarcinoma(48;1.53e-05)|Epithelial(34;0.00314)|all cancers(34;0.00891)	GBM - Glioblastoma multiforme(112;0.0222)		GGTGTAGGGGGGTATTTCCTC	0.597													34	75					0	0	0.074837	0	0
SOS2	6655	broad.mit.edu	37	14	50605391	50605391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:50605391G>A	uc001wxs.3	-	18	2995	c.2897C>T	c.(2896-2898)ACT>ATT	p.T966I	SOS2_uc010tql.1_Missense_Mutation_p.T933I|SOS2_uc010tqm.1_RNA	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	966	Ras-GEF.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					AATTTCTCCAGTAATTTCAGC	0.323													33	31					0	0	0.074837	0	0
L2HGDH	79944	broad.mit.edu	37	14	50732175	50732175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:50732175G>A	uc001wxu.2	-	9	1176	c.1097C>T	c.(1096-1098)TCC>TTC	p.S366F	L2HGDH_uc010tqn.1_Missense_Mutation_p.S366F|L2HGDH_uc010tqo.1_Missense_Mutation_p.S366F	NM_024884	NP_079160	Q9H9P8	L2HDH_HUMAN	L-2-hydroxyglutarate dehydrogenase precursor	366					2-oxoglutarate metabolic process|cellular protein metabolic process	integral to mitochondrial inner membrane	2-hydroxyglutarate dehydrogenase activity			ovary(2)	2	all_epithelial(31;0.000599)|Breast(41;0.0102)					AACTCCATAGGAAAAATTCTG	0.308													13	16					0	0	0.119110	0	0
TXNDC16	57544	broad.mit.edu	37	14	53009099	53009099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:53009099G>A	uc001wzs.2	-	4	682	c.233C>T	c.(232-234)TCA>TTA	p.S78L	TXNDC16_uc010tqu.1_Missense_Mutation_p.S78L|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	78					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					CTTGGCAACTGAAATTCCATA	0.318													20	26					0	0	0.062417	0	0
SLC35F4	341880	broad.mit.edu	37	14	58030954	58030954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:58030954C>T	uc001xdb.1	-	8	1465	c.1465G>A	c.(1465-1467)GAA>AAA	p.E489K	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Missense_Mutation_p.E330K	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						CTCTTCTTTTCCTTCAGGCTG	0.522													7	11					0	0	0.029380	0	0
SYNE2	23224	broad.mit.edu	37	14	64547173	64547173	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:64547173G>A	uc001xgm.2	+	56	11394	c.11164_splice	c.e56-1	p.K3722_splice	SYNE2_uc001xgl.2_Splice_Site_p.K3722_splice|SYNE2_uc010apy.2_Splice_Site_p.K84_splice|SYNE2_uc010apx.1_Splice_Site_p.K114_splice	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2						centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TCCTTCTCCAGAAAATGTGGG	0.393													34	39					0	0	0.086207	0	0
C14orf50	145376	broad.mit.edu	37	14	65053938	65053938	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:65053938G>A	uc001xhl.1	+	10	834	c.738G>A	c.(736-738)GTG>GTA	p.V246V	C14orf50_uc001xhm.1_5'UTR	NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	246										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		GTACATATGTGGCTTGGATTG	0.403													11	14					0	0	0.080935	0	0
ACTN1	87	broad.mit.edu	37	14	69371391	69371391	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:69371391G>A	uc001xkl.2	-	7	967	c.657C>T	c.(655-657)CCC>CCT	p.P219P	ACTN1_uc010ttb.1_Silent_p.P154P|ACTN1_uc001xkm.2_Silent_p.P219P|ACTN1_uc001xkn.2_Silent_p.P219P|ACTN1_uc001xko.1_Silent_p.P154P|ACTN1_uc010ttd.1_Silent_p.P198P	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	219	CH 2.|Actin-binding.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		CCAGCATCTTGGGGATGTCCA	0.532													20	35					0	0	0.083992	0	0
EXD2	55218	broad.mit.edu	37	14	69695678	69695678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:69695678C>T	uc001xkt.2	+	5	763	c.104C>T	c.(103-105)ACC>ATC	p.T35I	EXD2_uc001xku.2_5'UTR|EXD2_uc001xkv.2_Missense_Mutation_p.T160I|EXD2_uc001xkw.2_Missense_Mutation_p.T35I|EXD2_uc001xkx.2_RNA|EXD2_uc010aqt.2_Missense_Mutation_p.T160I|EXD2_uc010tte.1_Missense_Mutation_p.T160I|EXD2_uc001xky.2_Missense_Mutation_p.T35I	NM_018199	NP_060669	Q9NVH0	EXD2_HUMAN	exonuclease 3'-5' domain containing 2	35	3'-5' exonuclease.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						GCAGATGGCACCATTTTGAAA	0.517													31	50					0	0	0.144211	0	0
MAP3K9	4293	broad.mit.edu	37	14	71202744	71202744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:71202744G>A	uc001xmm.2	-	9	1847	c.1847C>T	c.(1846-1848)TCC>TTC	p.S616F	MAP3K9_uc010ttk.1_Intron|MAP3K9_uc001xmk.2_Intron|MAP3K9_uc001xml.2_Missense_Mutation_p.S616F	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	616					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		TCTCTGAGGGGATCTTCAATG	0.493													10	10					0	0	0.069234	0	0
Unknown	0	broad.mit.edu	37	14	73079414	73079414	+	RNA	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:73079414C>T	uc010arh.1	-	1		c.390G>A								Homo sapiens cDNA FLJ14079 fis, clone HEMBB1002134, weakly similar to ZINC-FINGER PROTEIN NEURO-D4.																		AGCTTTGCATCCCTTTGATAG	0.448													9	6					0	0	0.047766	0	0
ACOT6	641372	broad.mit.edu	37	14	74083772	74083773	+	Translation_Start_Site	DNP	CC	AT	AT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:74083772_74083773CC>AT	uc001xop.2	+	1	225_226	c.-106_-105CC>AT	c.(-108--103)GGCCGG>GGATGG			NM_001037162	NP_001032239	Q3I5F7	ACOT6_HUMAN	acyl-CoA thioesterase 6							cytosol	carboxylesterase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00331)		AGCCTCCTGGCCGGACATGGTT	0.52													27	39					0	0	0.115264	0	0
ALDH6A1	4329	broad.mit.edu	37	14	74538651	74538651	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:74538651C>T	uc001xpo.2	-	5	474	c.375G>A	c.(373-375)TTG>TTA	p.L125L	C14orf45_uc001xpm.1_Intron|ALDH6A1_uc010asa.2_5'UTR|ALDH6A1_uc010tuq.1_Silent_p.L112L	NM_005589	NP_005580	Q02252	MMSA_HUMAN	aldehyde dehydrogenase 6A1 precursor	125						mitochondrial matrix|nucleus	fatty-acyl-CoA binding|malonate-semialdehyde dehydrogenase (acetylating) activity|methylmalonate-semialdehyde dehydrogenase (acylating) activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00354)	NADH(DB00157)	TCCCTTGTTCCAATGTGATTA	0.418													34	31					0	0	0.064281	0	0
ABCD4	5826	broad.mit.edu	37	14	74759018	74759019	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:74759018_74759019GG>AA	uc001xpr.2	-	11	1241_1242	c.1089_1090CC>TT	c.(1087-1092)ATCCTG>ATTTTG	p.363_364IL>IL	ABCD4_uc001xps.2_Silent_p.204_205IL>IL|ABCD4_uc001xpt.2_Silent_p.204_205IL>IL|ABCD4_uc010tur.1_Silent_p.259_260IL>IL|ABCD4_uc001xpu.2_Silent_p.100_101IL>IL|ABCD4_uc001xpv.2_RNA	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	363_364						ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		CTCTCGCCCAGGATCTCGCAGT	0.584													25	54					0	0	0.115264	0	0
TMEM90A	646658	broad.mit.edu	37	14	74876350	74876350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:74876350G>A	uc001xpx.2	-	2	346	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	33					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		TTCCTGGCAGGACCAGCTGGG	0.662													22	39					0	0	0.091800	0	0
LTBP2	4053	broad.mit.edu	37	14	74988709	74988709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:74988709C>T	uc001xqa.2	-	17	3080	c.2693G>A	c.(2692-2694)GGA>GAA	p.G898E		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	898	EGF-like 5; calcium-binding (Potential).|Cys-rich.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GCGCCCTTTTCCCTTGCAGGG	0.617													9	12					0	0	0.047766	0	0
PROX2	283571	broad.mit.edu	37	14	75330053	75330053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:75330053C>T	uc001xqr.1	-	1	485	c.485G>A	c.(484-486)GGG>GAG	p.G162E	PROX2_uc001xqq.1_Missense_Mutation_p.G88E	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	162					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		GCCTCCTGGCCCCTGAGCTGT	0.607													23	26					0	0	0.069288	0	0
PROX2	283571	broad.mit.edu	37	14	75330535	75330535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:75330535C>T	uc001xqr.1	-	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I	PROX2_uc001xqq.1_5'UTR	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	1					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		AGTTTGGATCCATCCCAGGCA	0.547													32	28					0	0	0.086207	0	0
STON2	85439	broad.mit.edu	37	14	81745057	81745057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:81745057C>T	uc010tvu.1	-	4	799	c.598G>A	c.(598-600)GAA>AAA	p.E200K	STON2_uc001xvk.1_Missense_Mutation_p.E200K|STON2_uc010tvt.1_5'UTR	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	200					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		TCTACTTCTTCATCTTCTTGA	0.507													39	54					0	0	0.086207	0	0
EML5	161436	broad.mit.edu	37	14	89109309	89109309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:89109309G>A	uc001xxg.2	-	31	4351	c.4165C>T	c.(4165-4167)CAC>TAC	p.H1389Y	EML5_uc001xxf.2_Missense_Mutation_p.H176Y|EML5_uc001xxh.1_Missense_Mutation_p.H520Y	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1381						cytoplasm|microtubule				ovary(3)	3						TTTAAATAGTGAACATTATTC	0.358													37	65					0	0	0.104719	0	0
BTBD7	55727	broad.mit.edu	37	14	93723605	93723605	+	Missense_Mutation	SNP	G	A	A	rs113550651		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:93723605G>A	uc001ybo.2	-	6	1870	c.1544C>T	c.(1543-1545)TCT>TTT	p.S515F	BTBD7_uc010aur.2_Missense_Mutation_p.S40F|BTBD7_uc010two.1_Missense_Mutation_p.S335F|BTBD7_uc001ybp.2_Missense_Mutation_p.S164F|BTBD7_uc001ybq.3_Missense_Mutation_p.S430F	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	515										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		AGGTAAGAGAGAAGAAAGGAT	0.403													41	52					0	0	0.124865	0	0
ASB2	51676	broad.mit.edu	37	14	94419799	94419799	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:94419799A>G	uc001ycc.1	-	3	878	c.389T>C	c.(388-390)TTG>TCG	p.L130S	ASB2_uc001ycd.2_Missense_Mutation_p.L178S|ASB2_uc001yce.1_Missense_Mutation_p.L76S	NM_016150	NP_057234	Q96Q27	ASB2_HUMAN	ankyrin repeat and SOCS box-containing protein	130	ANK 3.				intracellular signal transduction					ovary(1)|pancreas(1)	2		all_cancers(154;0.13)		COAD - Colon adenocarcinoma(157;0.217)|Epithelial(152;0.232)		GCACGTTGCCAAGTAAACGGC	0.582													19	34					0	0	0.043863	0	0
SERPINA13	388007	broad.mit.edu	37	14	95111301	95111301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:95111301G>A	uc001ydt.2	+	4	1121	c.1033G>A	c.(1033-1035)GAT>AAT	p.D345N		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						CAGAGAACTCGATTTCCACTT	0.557													17	28					0	0	0.062417	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102508358	102508358	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:102508358C>T	uc001yks.2	+	66	12275	c.12111C>T	c.(12109-12111)CCC>CCT	p.P4037P		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4037	AAA 6 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AGGTGAAGCCCAACACTCCTG	0.507													14	21					0	0	0.132662	0	0
RCOR1	23186	broad.mit.edu	37	14	103180860	103180860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:103180860C>T	uc001ymb.2	+	8	950	c.950C>T	c.(949-951)TCT>TTT	p.S317F		NM_015156	NP_055971	Q9UKL0	RCOR1_HUMAN	REST corepressor 1	317	Interaction with KDM1A.				blood coagulation|histone H4 deacetylation|interspecies interaction between organisms	transcriptional repressor complex	protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription regulatory region DNA binding			ovary(1)	1						ATGTTTCTTTCTCAAGAAGAT	0.438													19	23					0	0	0.043863	0	0
INF2	64423	broad.mit.edu	37	14	105175702	105175702	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:105175702C>T	uc001ypb.2	+	11	2177	c.2034C>T	c.(2032-2034)CTC>CTT	p.L678L	INF2_uc010tyi.1_Silent_p.L678L|INF2_uc001ypc.2_Silent_p.L678L|INF2_uc010awz.1_RNA	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	678	FH2.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		TCCTTAAGCTCCTTCCCGAGA	0.602													7	24					0	0	0.038147	0	0
C14orf80	283643	broad.mit.edu	37	14	105960205	105960205	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:105960205C>T	uc001yrm.2	+	5	746	c.619C>T	c.(619-621)CAG>TAG	p.Q207*	C14orf80_uc001yrj.2_Intron|C14orf80_uc001yrk.2_Intron|C14orf80_uc001yrn.2_Nonsense_Mutation_p.Q207*|C14orf80_uc001yro.2_Intron|C14orf80_uc010tys.1_Nonsense_Mutation_p.Q29*	NM_001134875	NP_001128347	Q86SX3	CN080_HUMAN	hypothetical protein LOC283643 isoform 1	207											0		Melanoma(154;0.226)	OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0188)	Epithelial(152;0.239)		CCACAGCGACCAGAGCCTTAG	0.632													7	11					0	0	0.080935	0	0
ADAM6	8755	broad.mit.edu	37	14	106237653	106237653	+	RNA	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:106237653C>T	uc010tyt.1	-	3611		c.57230G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						GGGAAGTAGTCCTTGACCAGG	0.657													14	16					0	0	0.033300	0	0
Unknown	0	broad.mit.edu	37	15	20495418	20495418	+	RNA	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:20495418C>T	uc001ytf.1	+	5		c.621C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		GAAAATGAATCCACAGCTCTA	0.383													11	77					0	0	0.093190	0	0
LOC646214	646214	broad.mit.edu	37	15	21938081	21938081	+	RNA	SNP	C	T	T	rs113837443	by1000genomes	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:21938081C>T	uc010tzj.1	-	1		c.2659G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CTCATTCGCACGGGAGGTGCT	0.512													46	228					0	0	0.139131	0	0
C15orf2	23742	broad.mit.edu	37	15	24924035	24924035	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:24924035G>A	uc001ywo.2	+	1	3495	c.3021G>A	c.(3019-3021)GTG>GTA	p.V1007V		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1007					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GCCCACAAGTGATTATGGGAC	0.512													9	22					0	0	0.058154	0	0
C15orf2	23742	broad.mit.edu	37	15	24924145	24924146	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:24924145_24924146GG>AA	uc001ywo.2	+	1	3605_3606	c.3131_3132GG>AA	c.(3130-3132)GGG>GAA	p.G1044E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1044					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GGACAGAGTGGGACACCCAGCA	0.574													13	27					0	0	0.115264	0	0
HERC2	8924	broad.mit.edu	37	15	28408265	28408265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:28408265G>A	uc001zbj.2	-	69	10827	c.10721C>T	c.(10720-10722)TCC>TTC	p.S3574F		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3574					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CCCCATGCCGGAAAGCACCGC	0.647													19	45					0	0	0.055883	0	0
Unknown	0	broad.mit.edu	37	15	28600011	28600011	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:28600011G>A	uc010uaf.1	-	4	249	c.231C>T	c.(229-231)GCC>GCT	p.A77A						SubName: Full=Putative uncharacterized protein ENSP00000383535; Flags: Fragment;																		TTTGAACCTGGGCCTTTGGGA	0.483													16	85					0	0	0.033300	0	0
Unknown	0	broad.mit.edu	37	15	28600114	28600114	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:28600114C>T	uc010uaf.1	-	3	234	c.216G>A	c.(214-216)AGG>AGA	p.R72R						SubName: Full=Putative uncharacterized protein ENSP00000383535; Flags: Fragment;																		CTAGCTCCCTCCTTAGGGCTT	0.502													7	47					0	0	0.038147	0	0
NDNL2	56160	broad.mit.edu	37	15	29561830	29561830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:29561830G>A	uc001zco.2	-	1	188	c.80C>T	c.(79-81)CCC>CTC	p.P27L	FAM189A1_uc010azk.1_Intron	NM_138704	NP_619649	Q96MG7	MAGG1_HUMAN	necdin-like 2	27					regulation of growth	cytoplasm|nucleus					0		all_lung(180;4.69e-11)|Breast(32;0.0013)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00736)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		CGAAGCCCCGGGGTTTCCGCT	0.726													6	5					0	0	0.029380	0	0
TRPM1	4308	broad.mit.edu	37	15	31358298	31358298	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:31358298G>A	uc001zfm.2	-	6	833	c.705C>T	c.(703-705)TCC>TCT	p.S235S	TRPM1_uc010azy.2_Silent_p.S148S|TRPM1_uc001zfl.2_RNA|uc010ubm.1_5'Flank|MIR211_hsa-mir-211|MI0000287_5'Flank	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	235	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		TCTTCTGCAGGGAGATGTGCT	0.547													41	54					0	0	0.111260	0	0
RYR3	6263	broad.mit.edu	37	15	33895388	33895388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:33895388G>A	uc001zhi.2	+	18	2057	c.1987G>A	c.(1987-1989)GAG>AAG	p.E663K	RYR3_uc010bar.2_Missense_Mutation_p.E663K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	663	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GTGGTACTTCGAGCTGATTAT	0.567													48	78					0	0	0.139131	0	0
RYR3	6263	broad.mit.edu	37	15	33962662	33962662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:33962662C>T	uc001zhi.2	+	38	5835	c.5765C>T	c.(5764-5766)TCC>TTC	p.S1922F	RYR3_uc010bar.2_Missense_Mutation_p.S1922F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1922	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		gaggaCACCTCCTGGACAGGA	0.448													21	32					0	0	0.049695	0	0
RYR3	6263	broad.mit.edu	37	15	34130072	34130072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:34130072C>T	uc001zhi.2	+	89	11961	c.11891C>T	c.(11890-11892)TCG>TTG	p.S3964L	RYR3_uc010bar.2_Missense_Mutation_p.S3959L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3964					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTTCTCCTGTCGTGTGCAGAA	0.428													42	59					0	0	0.124865	0	0
C15orf55	256646	broad.mit.edu	37	15	34649254	34649254	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:34649254A>T	uc001zif.2	+	7	3116	c.2961A>T	c.(2959-2961)GAA>GAT	p.E987D	C15orf55_uc010ucc.1_Missense_Mutation_p.E1015D|C15orf55_uc010ucd.1_Missense_Mutation_p.E1005D	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	987						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		TTCCGAGAGAAACTTCTGTTA	0.473			T	BRD3|BRD4	lethal midline carcinoma								14	18					0	0	0.105934	0	0
RASGRP1	10125	broad.mit.edu	37	15	38852081	38852081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:38852081C>T	uc001zke.3	-	2	339	c.161G>A	c.(160-162)GGA>GAA	p.G54E	RASGRP1_uc001zkd.3_Missense_Mutation_p.G54E	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	54	N-terminal Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		GGCTAAATGTCCCAGAGACAC	0.512													26	22					0	0	0.125774	0	0
MGA	23269	broad.mit.edu	37	15	42050032	42050032	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:42050032C>T	uc010ucy.1	+	19	7367	c.7186C>T	c.(7186-7188)CGA>TGA	p.R2396*	MGA_uc010ucz.1_Nonsense_Mutation_p.R2187*|MGA_uc010uda.1_Nonsense_Mutation_p.R1012*	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2357	Basic motif.					MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TGAAAGGAGTCGAAAGGTATT	0.323													28	33					0	0	0.069456	0	0
GANC	2595	broad.mit.edu	37	15	42619583	42619583	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:42619583C>T	uc001zpi.2	+	13	1757	c.1443C>T	c.(1441-1443)TTC>TTT	p.F481F	GANC_uc001zpj.1_Silent_p.F220F	NM_198141	NP_937784	Q8TET4	GANC_HUMAN	glucosidase, alpha; neutral C	481					carbohydrate metabolic process		carbohydrate binding|maltose alpha-glucosidase activity			central_nervous_system(2)	2		all_cancers(109;3.08e-16)|all_epithelial(112;7.48e-15)|Lung NSC(122;3.08e-09)|all_lung(180;1.48e-08)|Melanoma(134;0.0574)|Colorectal(260;0.153)		GBM - Glioblastoma multiforme(94;1.06e-06)		ACCTGGATTTCACCAATCCCA	0.423													72	91					0	0	0.139131	0	0
GANC	2595	broad.mit.edu	37	15	42632908	42632908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:42632908C>T	uc001zpi.2	+	18	2422	c.2108C>T	c.(2107-2109)CCT>CTT	p.P703L		NM_198141	NP_937784	Q8TET4	GANC_HUMAN	glucosidase, alpha; neutral C	703					carbohydrate metabolic process		carbohydrate binding|maltose alpha-glucosidase activity			central_nervous_system(2)	2		all_cancers(109;3.08e-16)|all_epithelial(112;7.48e-15)|Lung NSC(122;3.08e-09)|all_lung(180;1.48e-08)|Melanoma(134;0.0574)|Colorectal(260;0.153)		GBM - Glioblastoma multiforme(94;1.06e-06)		GTAGAGTTCCCTGATGAACTA	0.239													19	42					0	0	0.062417	0	0
CDAN1	146059	broad.mit.edu	37	15	43021262	43021262	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:43021262G>A	uc001zql.2	-	19	2721	c.2604C>T	c.(2602-2604)TTC>TTT	p.F868F	CDAN1_uc001zqj.2_RNA|CDAN1_uc001zqk.2_Silent_p.F194F	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	868			F -> I (in CDA1).			integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		TTTCTGCCACGAACTCTACGG	0.547													43	52					0	0	0.139131	0	0
TGM5	9333	broad.mit.edu	37	15	43548859	43548859	+	Silent	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:43548859T>C	uc001zrd.1	-	4	470	c.462A>G	c.(460-462)GAA>GAG	p.E154E	TGM5_uc001zre.1_Silent_p.E72E	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	154					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	GCCTCTGGGGTTCACTGTCCA	0.522													55	61					0	0	0.139131	0	0
DUOX2	50506	broad.mit.edu	37	15	45401027	45401027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:45401027G>A	uc010bea.2	-	12	1561	c.1358C>T	c.(1357-1359)CCA>CTA	p.P453L	DUOX2_uc001zun.2_Missense_Mutation_p.P453L	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	453	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CCAGTTCCTTGGGATGTCCAG	0.443													28	47					0	0	0.134883	0	0
MYO5C	55930	broad.mit.edu	37	15	52571191	52571191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:52571191G>A	uc010bff.2	-	4	465	c.328C>T	c.(328-330)CCT>TCT	p.P110S	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_Missense_Mutation_p.P73S|MIR1266_hsa-mir-1266|MI0006403_5'Flank	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	110	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TGCTTGTAAGGATTCATGGCC	0.438													34	59					0	0	0.104719	0	0
PRTG	283659	broad.mit.edu	37	15	55974628	55974628	+	Missense_Mutation	SNP	G	A	A	rs143548115		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:55974628G>A	uc002adg.2	-	4	658	c.610C>T	c.(610-612)CGT>TGT	p.R204C		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	204	Ig-like 2.				multicellular organismal development	integral to membrane		p.R204C(1)		large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		GCAATACAACGATAATTTCCA	0.423													28	19					0	0	0.134883	0	0
ADAM10	102	broad.mit.edu	37	15	58938315	58938315	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:58938315T>A	uc002afd.1	-	6	1118	c.674A>T	c.(673-675)TAT>TTT	p.Y225F	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Intron|ADAM10_uc002afe.1_Intron	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	225	Peptidase M12B.|Extracellular (Potential).				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		AGTCTGAATATAAAGCTGACA	0.348													13	17					0	0	0.119110	0	0
FOXB1	27023	broad.mit.edu	37	15	60297359	60297359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:60297359C>T	uc002agj.1	+	2	676	c.197C>T	c.(196-198)TCC>TTC	p.S66F	FOXB1_uc010bgh.1_Intron	NM_012182	NP_036314	Q99853	FOXB1_HUMAN	forkhead box B1	66	Fork-head.				axon target recognition|cell migration in diencephalon|epithelial cell differentiation involved in mammary gland alveolus development|floor plate development|hypothalamus cell migration|inferior colliculus development|lactation|mammillothalamic axonal tract development|negative regulation of neuron apoptosis|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|telencephalon cell migration|visual learning	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|central_nervous_system(1)	2						CACAACCTCTCCTTCAACGAC	0.607													36	56					0	0	0.080422	0	0
ZNF609	23060	broad.mit.edu	37	15	64791939	64791939	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:64791939C>T	uc002ann.2	+	1	321	c.321C>T	c.(319-321)TCC>TCT	p.S107S	ZNF609_uc010bgy.2_Silent_p.S107S	NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	107						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CAGGGACTTCCCTGTTCACTC	0.547													19	27					0	0	0.043863	0	0
SLC24A1	9187	broad.mit.edu	37	15	65931956	65931956	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:65931956G>A	uc010ujf.1	+	4	2255	c.1968G>A	c.(1966-1968)GGG>GGA	p.G656G	SLC24A1_uc010ujd.1_Silent_p.G638G|SLC24A1_uc010uje.1_Silent_p.G638G|SLC24A1_uc010ujg.1_Silent_p.G656G|SLC24A1_uc010ujh.1_Silent_p.G638G	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	656	Cytoplasmic (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						TGACCCGAGGGAGCAGCTCGA	0.622													4	5					0	0	0.009096	0	0
LBXCOR1	390598	broad.mit.edu	37	15	68119370	68119370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:68119370G>A	uc002aqy.1	+	3	1072	c.1072G>A	c.(1072-1074)GCC>ACC	p.A358T		NM_001031807	NP_001026977	P84550	SKOR1_HUMAN	transcriptional corepressor Corl1	402					negative regulation of BMP signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	cytoplasm|dendrite|neuronal cell body|nucleus	nucleotide binding|SMAD binding|transcription repressor activity				0						CTTCCCTACGGCCTTCGGCCT	0.552													29	27					0	0	0.050027	0	0
ITGA11	22801	broad.mit.edu	37	15	68649613	68649613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:68649613C>T	uc002ari.2	-	7	712	c.625G>A	c.(625-627)GAT>AAT	p.D209N	ITGA11_uc010bib.2_Missense_Mutation_p.D209N	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	209	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	TGCACCACATCTTCGCCATAC	0.502													33	40					0	0	0.074837	0	0
CORO2B	10391	broad.mit.edu	37	15	69007569	69007569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:69007569C>T	uc002arj.3	+	8	915	c.886C>T	c.(886-888)CGG>TGG	p.R296W	CORO2B_uc010bic.2_Missense_Mutation_p.R291W|CORO2B_uc002ark.2_Missense_Mutation_p.R63W	NM_006091	NP_006082	Q9UQ03	COR2B_HUMAN	coronin, actin binding protein, 2B	296	WD 5.				actin cytoskeleton organization	actin cytoskeleton|cytoplasm|membrane	actin filament binding			ovary(3)|skin(2)|large_intestine(1)	6						TGGAAACATCCGGTACTACGA	0.607													37	78					0	0	0.104719	0	0
NEO1	4756	broad.mit.edu	37	15	73468837	73468837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:73468837C>T	uc002avm.3	+	6	1251	c.1109C>T	c.(1108-1110)CCA>CTA	p.P370L	NEO1_uc010ukx.1_Missense_Mutation_p.P370L|NEO1_uc010uky.1_Missense_Mutation_p.P370L|NEO1_uc010ukz.1_5'UTR|NEO1_uc002avn.3_Missense_Mutation_p.P15L	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	370	Extracellular (Potential).|Ig-like C2-type 4.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						AAACCAACTCCAACTGTGAAG	0.343													30	36					0	0	0.125774	0	0
GOLGA6A	342096	broad.mit.edu	37	15	74365120	74365120	+	Silent	SNP	T	C	C	rs150515307		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:74365120T>C	uc002axa.1	-	13	1505	c.1464A>G	c.(1462-1464)CTA>CTG	p.L488L		NM_001038640	NP_001033729	Q9NYA3	GOG6A_HUMAN	golgi autoantigen, golgin subfamily a, 6	488	Potential.										0						GCTGGGTCTCTAGCTGTTGGT	0.612													12	81					0	0	0.132662	0	0
STRA6	64220	broad.mit.edu	37	15	74487792	74487792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:74487792C>T	uc002axk.2	-	7	630	c.448G>A	c.(448-450)GGA>AGA	p.G150R	STRA6_uc002axi.2_Intron|STRA6_uc010ulh.1_Missense_Mutation_p.G188R|STRA6_uc002axj.2_Missense_Mutation_p.G189R|STRA6_uc010bji.2_Missense_Mutation_p.G150R|STRA6_uc002axl.2_Missense_Mutation_p.G82R|STRA6_uc002axm.2_Missense_Mutation_p.G150R|STRA6_uc002axn.2_Missense_Mutation_p.G141R|STRA6_uc010uli.1_Missense_Mutation_p.G187R|STRA6_uc010bjj.1_RNA|STRA6_uc010bjk.2_3'UTR	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	150	Extracellular (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						TAGAACAGTCCCAGTATCTTC	0.627													15	26					0	0	0.132662	0	0
FSD2	123722	broad.mit.edu	37	15	83440853	83440853	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:83440853C>T	uc002bjd.2	-	7	1406	c.1239G>A	c.(1237-1239)CAG>CAA	p.Q413Q	FSD2_uc010uol.1_Silent_p.Q413Q|FSD2_uc010uom.1_Silent_p.Q413Q	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	413	Fibronectin type-III 1.									central_nervous_system(1)	1						GTGAGCTGTCCTGCACTGGCC	0.612													12	10					0	0	0.105934	0	0
AKAP13	11214	broad.mit.edu	37	15	86076862	86076862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:86076862G>A	uc002blv.1	+	4	399	c.229G>A	c.(229-231)GAG>AAG	p.E77K	AKAP13_uc002bls.2_Missense_Mutation_p.E77K|AKAP13_uc002blt.1_Missense_Mutation_p.E77K|AKAP13_uc002blu.1_Missense_Mutation_p.E77K	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	77					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TGCTTCCAAAGAGGGCCTTCC	0.458													34	43					0	0	0.069456	0	0
ACAN	176	broad.mit.edu	37	15	89401231	89401231	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:89401231C>T	uc010upo.1	+	12	5789	c.5415C>T	c.(5413-5415)TTC>TTT	p.F1805F	ACAN_uc010upp.1_Silent_p.F1805F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1805					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TACCAGGGTTCAGTGGGGCAA	0.512													16	26					0	0	0.033300	0	0
POLG	5428	broad.mit.edu	37	15	89867054	89867055	+	Silent	DNP	GG	AT	AT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:89867054_89867055GG>AT	uc002bns.3	-	12	2430_2431	c.2148_2149CC>AT	c.(2146-2151)CCCCTA>CCATTA	p.716_717PL>PL	POLG_uc002bnr.3_Silent_p.716_717PL>PL	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	716_717					base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			ACCAGAGCTAGGGGTTGACCTG	0.569								DNA_polymerases_(catalytic_subunits)					20	42					0	0	0.115264	0	0
C15orf42	90381	broad.mit.edu	37	15	90167479	90167479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:90167479C>T	uc002boe.2	+	20	3938	c.3938C>T	c.(3937-3939)ACC>ATC	p.T1313I	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1313	Pro-rich.				cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			AAACTGTTTACCTCTCCTTTA	0.433													41	71					0	0	0.139131	0	0
WDR93	56964	broad.mit.edu	37	15	90281389	90281389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:90281389C>T	uc002boj.2	+	16	1984	c.1883C>T	c.(1882-1884)CCT>CTT	p.P628L	WDR93_uc010bnr.2_Missense_Mutation_p.P600L|WDR93_uc010upz.1_Missense_Mutation_p.P345L	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	628					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			TGTACCATTCCTCAAAGGGAC	0.458													125	176					0	0	0.139131	0	0
ALDH1A3	220	broad.mit.edu	37	15	101427813	101427813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:101427813G>A	uc002bwn.3	+	3	345	c.241G>A	c.(241-243)GCC>ACC	p.A81T	ALDH1A3_uc010bpb.2_Missense_Mutation_p.A81T|ALDH1A3_uc010bpa.1_Missense_Mutation_p.A81T	NM_000693	NP_000684	P47895	AL1A3_HUMAN	aldehyde dehydrogenase 1A3	81					retinal metabolic process	cytoplasm	aldehyde dehydrogenase|protein homodimerization activity			central_nervous_system(2)|lung(1)|pancreas(1)	4	Lung NSC(78;0.00144)|all_lung(78;0.0018)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)		NADH(DB00157)|Vitamin A(DB00162)	TGCACAGGTTGCCTTCCAGAG	0.627													56	70					0	0	0.139131	0	0
LRRK1	79705	broad.mit.edu	37	15	101593520	101593520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:101593520C>T	uc002bwr.2	+	26	4268	c.3949C>T	c.(3949-3951)CCC>TCC	p.P1317S	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1317	Protein kinase.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GCTGCAGCACCCCTGCATCGT	0.662													12	26					0	0	0.146539	0	0
CHSY1	22856	broad.mit.edu	37	15	101718446	101718446	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:101718446A>G	uc002bwt.1	-	4	2039	c.1556T>C	c.(1555-1557)CTC>CCC	p.L519P	CHSY1_uc010usd.1_Missense_Mutation_p.L247P	NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	519	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CGACCCAGGGAGCTGAAAGGG	0.458													33	62					0	0	0.080422	0	0
AXIN1	8312	broad.mit.edu	37	16	396889	396889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:396889G>A	uc002cgp.1	-	2	314	c.137C>T	c.(136-138)TCC>TTC	p.S46F	AXIN1_uc002cgq.1_Missense_Mutation_p.S46F	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	46					activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				ACCTTTCCCGGAGCAGAAACT	0.627													11	22					0	0	0.093190	0	0
LMF1	64788	broad.mit.edu	37	16	921330	921330	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:921330G>A	uc002ckj.2	-	7	913	c.909C>T	c.(907-909)ATC>ATT	p.I303I	LMF1_uc010brg.2_5'Flank|LMF1_uc010brh.2_Silent_p.I86I|LMF1_uc010bri.2_Silent_p.I66I|LMF1_uc002ckk.2_Silent_p.I86I	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	303	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				TCCCGCTGACGATGAGGACGG	0.662													12	14					0	0	0.093190	0	0
PTX4	390667	broad.mit.edu	37	16	1537384	1537384	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:1537384C>T	uc010uvf.1	-	2	714	c.714G>A	c.(712-714)CGG>CGA	p.R238R		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	243						extracellular region	metal ion binding				0						CACTGAGTACCCGATGGCTGC	0.682													15	25					0	0	0.146539	0	0
CASKIN1	57524	broad.mit.edu	37	16	2237453	2237453	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:2237453G>A	uc010bsg.1	-	7	659	c.627C>T	c.(625-627)CTC>CTT	p.L209L		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	209	ANK 5.				signal transduction	cytoplasm				skin(2)	2						TGCCGGCTTGGAGGAGGAGCC	0.677													20	16					0	0	0.049695	0	0
USP7	7874	broad.mit.edu	37	16	9012978	9012979	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:9012978_9012979GT>AA	uc002czl.2	-	6	828_829	c.629_630AC>TT	c.(628-630)CAC>CTT	p.H210L	USP7_uc010uyk.1_Missense_Mutation_p.H111L|USP7_uc010uyj.1_Missense_Mutation_p.H111L|USP7_uc002czk.2_Missense_Mutation_p.H194L|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	210					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						CGTAGCCTGTGTGCTTCTTTGA	0.46													41	59					0	0	0.115264	0	0
CIITA	4261	broad.mit.edu	37	16	10995954	10995954	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:10995954A>C	uc002dai.3	+	7	674	c.541A>C	c.(541-543)ACC>CCC	p.T181P	CIITA_uc002daj.3_Missense_Mutation_p.T182P|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Missense_Mutation_p.T181P|CIITA_uc002dah.2_Intron|CIITA_uc010bup.1_Missense_Mutation_p.T181P	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	181					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CGACTGCTCCACCCTGCCCTG	0.617			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								10	77					0	0	0.099896	0	0
ERCC4	2072	broad.mit.edu	37	16	14041765	14041765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:14041765C>T	uc002dce.2	+	11	2321	c.2312C>T	c.(2311-2313)TCC>TTC	p.S771F	ERCC4_uc010uyz.1_Missense_Mutation_p.S321F	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	771	Interaction with EME1 and ERCC1.				double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						TCTCTCACTTCCCGAGGTGCC	0.522			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				43	67					0	0	0.139131	0	0
MYH11	4629	broad.mit.edu	37	16	15844056	15844056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:15844056G>A	uc002ddy.2	-	16	2104	c.1997C>T	c.(1996-1998)ACC>ATC	p.T666I	MYH11_uc002ddv.2_Missense_Mutation_p.T673I|MYH11_uc002ddw.2_Missense_Mutation_p.T666I|MYH11_uc002ddx.2_Missense_Mutation_p.T673I|MYH11_uc010bvg.2_Missense_Mutation_p.T498I|MYH11_uc002dea.1_Missense_Mutation_p.T372I	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	666	Myosin head-like.|Actin-binding (By similarity).				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCGTAGCGTGGTCATCAGCTT	0.637			T	CBFB	AML								24	47					0	0	0.116897	0	0
GPRC5B	51704	broad.mit.edu	37	16	19883880	19883880	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:19883880G>A	uc002dgt.2	-	2	396	c.288C>T	c.(286-288)CAC>CAT	p.H96H	GPRC5B_uc010vav.1_Silent_p.H122H	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	96	Helical; Name=2; (Potential).									lung(1)|breast(1)|skin(1)	3						GGAACAGAAAGTGGAGGCCCA	0.622													15	22					0	0	0.146539	0	0
ACSM2B	348158	broad.mit.edu	37	16	20576154	20576154	+	Missense_Mutation	SNP	C	T	T	rs144570025		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:20576154C>T	uc002dhj.3	-	3	224	c.14G>A	c.(13-15)CGA>CAA	p.R5Q	ACSM2B_uc002dhk.3_Missense_Mutation_p.R5Q|ACSM2B_uc010bwf.1_Missense_Mutation_p.R5Q	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	5					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CTGAACTTTTCGCAGCCAATG	0.498													20	40					0	0	0.069288	0	0
ACSM1	116285	broad.mit.edu	37	16	20682984	20682984	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:20682984G>A	uc002dhm.1	-	4	689	c.621C>T	c.(619-621)TCC>TCT	p.S207S	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.S207S	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	207					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TGTGTTCTGGGGATGCTGATC	0.468													32	37					0	0	0.111260	0	0
Unknown	0	broad.mit.edu	37	16	21854860	21854860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:21854860G>A	uc002djr.3	-	6	574	c.392C>T	c.(391-393)TCC>TTC	p.S131F	uc002djs.3_RNA|uc002djq.3_Missense_Mutation_p.S112F|uc010vbn.1_Missense_Mutation_p.S131F	NM_130464	NP_569731			nuclear pore complex interacting protein-like 3																		TCCTCGAAAGGAAGAAACTCT	0.428													54	430					0	0	0.139131	0	0
SCNN1G	6340	broad.mit.edu	37	16	23200907	23200907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:23200907G>A	uc002dlm.1	+	3	672	c.533G>A	c.(532-534)AGG>AAG	p.R178K		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	178	Extracellular (By similarity).		R -> W.		excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TTCACAGGGAGGAAGCGGAAA	0.517													71	144					0	0	0.139131	0	0
SCNN1B	6338	broad.mit.edu	37	16	23364235	23364235	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:23364235T>G	uc002dln.2	+	3	601	c.425T>G	c.(424-426)TTC>TGC	p.F142C		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	142	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	AACCTGAACTTCTCCATCTGG	0.522													46	58					0	0	0.139131	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147315	26147315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:26147315G>A	uc002dof.2	+	2	1509	c.1117G>A	c.(1117-1119)GAT>AAT	p.D373N		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	373	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		CAAAGTACAGGATTTTCTAGG	0.507													25	33					0	0	0.099896	0	0
KIAA0556	23247	broad.mit.edu	37	16	27689234	27689234	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:27689234T>C	uc002dow.2	+	7	749	c.725T>C	c.(724-726)GTT>GCT	p.V242A	KIAA0556_uc002dox.1_Missense_Mutation_p.V150A	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	242										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						CAGAAAGATGTTCACGGGGAA	0.567													23	33					0	0	0.083992	0	0
SBK1	388228	broad.mit.edu	37	16	28328872	28328872	+	Missense_Mutation	SNP	G	A	A	rs140773263	by1000genomes	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:28328872G>A	uc002dpd.2	+	2	949	c.160G>A	c.(160-162)GAA>AAA	p.E54K		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	54	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						CAAGCACTACGAACTAGTCCG	0.622											OREG0023701	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	39					0	0	0.043863	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29906770	29906770	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:29906770C>T	uc002duq.3	-	5	903	c.663G>A	c.(661-663)CTG>CTA	p.L221L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Silent_p.L151L|SEZ6L2_uc002dur.3_Silent_p.L151L|SEZ6L2_uc002dus.3_Intron|SEZ6L2_uc010vec.1_Silent_p.L221L|SEZ6L2_uc010ved.1_Silent_p.L177L	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	221	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GTGACAGGTTCAGCGTCTGCA	0.612													25	22					0	0	0.091800	0	0
ZNF768	79724	broad.mit.edu	37	16	30536220	30536220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:30536220G>A	uc002dyk.3	-	2	1417	c.1241C>T	c.(1240-1242)TCG>TTG	p.S414L	ZNF768_uc010vex.1_Missense_Mutation_p.S383L|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Missense_Mutation_p.S383L	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	414	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						GATAAGGGCCGACCGCTGGGA	0.652													12	23					0	0	0.119110	0	0
PRSS53	339105	broad.mit.edu	37	16	31095588	31095588	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:31095588G>A	uc002eaq.2	-	10	1494	c.1494C>T	c.(1492-1494)TTC>TTT	p.F498F	PRSS53_uc002ear.2_Silent_p.F292F	NM_001039503	NP_001034592	Q2L4Q9	PRS53_HUMAN	polyserase 3 precursor	498	Peptidase S1 2.				proteolysis	extracellular region	serine-type endopeptidase activity				0						AAGCATCTCCGAAGCTGTGCA	0.647													14	13					0	0	0.033300	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163577	32163577	+	RNA	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:32163577C>T	uc002ecx.2	-	2		c.194G>A				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						GCACAGGCGACCATCGATGCC	0.592													7	22					0	0	0.038147	0	0
ZNF423	23090	broad.mit.edu	37	16	49671409	49671409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:49671409C>T	uc002efs.2	-	5	1952	c.1654G>A	c.(1654-1656)GTG>ATG	p.V552M	ZNF423_uc010vgn.1_Missense_Mutation_p.V435M	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	552					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				GGCTGCACCACCGGAGACTCT	0.572													20	53					0	0	0.055883	0	0
NKD1	85407	broad.mit.edu	37	16	50667172	50667172	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:50667172A>C	uc002egg.1	+	10	1117	c.893A>C	c.(892-894)CAT>CCT	p.H298P		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	298					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		TCTCGCTCCCATGAGCCGGAA	0.562													44	75					0	0	0.139131	0	0
SALL1	6299	broad.mit.edu	37	16	51175289	51175289	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:51175289A>C	uc010vgs.1	-	2	875	c.844T>G	c.(844-846)TTG>GTG	p.L282V	SALL1_uc010vgr.1_Missense_Mutation_p.L185V|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	282					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AGCGTGGACAAGGGGTTGGCA	0.493													41	61					0	0	0.086207	0	0
CCDC135	84229	broad.mit.edu	37	16	57734062	57734062	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:57734062C>T	uc002emi.2	+	4	473	c.384C>T	c.(382-384)TTC>TTT	p.F128F	CCDC135_uc002emj.2_Silent_p.F128F|CCDC135_uc002emk.2_Silent_p.F128F	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	128						cytoplasm				central_nervous_system(1)	1						TGCAGAAGTTCGTGAGCACAA	0.572													70	119					0	0	0.139131	0	0
KIFC3	3801	broad.mit.edu	37	16	57803756	57803757	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:57803756_57803757GG>AA	uc002emp.2	-	8	1247_1248	c.1050_1051CC>TT	c.(1048-1053)GCCCAG>GCTTAG	p.Q351*	KIFC3_uc010vhw.1_Nonsense_Mutation_p.Q249*|KIFC3_uc002emn.2_RNA|KIFC3_uc002emm.2_Nonsense_Mutation_p.Q212*|KIFC3_uc010vhx.1_Nonsense_Mutation_p.Q212*|KIFC3_uc010cdf.2_Nonsense_Mutation_p.Q212*|KIFC3_uc002emo.3_Nonsense_Mutation_p.Q212*|KIFC3_uc010vhy.1_Nonsense_Mutation_p.Q293*|KIFC3_uc002emq.2_Nonsense_Mutation_p.Q351*|KIFC3_uc010vhz.1_Nonsense_Mutation_p.Q373*|KIFC3_uc002emr.1_Nonsense_Mutation_p.Q128*	NM_005550	NP_005541	Q9BVG8	KIFC3_HUMAN	kinesin family member C3 isoform 1	351	Potential.				epithelial cell-cell adhesion|microtubule-based movement|visual perception|zonula adherens maintenance	centrosome|cytoplasmic vesicle membrane|kinesin complex|microtubule|zonula adherens	ATP binding|microtubule motor activity			central_nervous_system(2)|ovary(1)	3		all_neural(199;0.224)				ATCTCCACCTGGGCTCTGGCAA	0.644													21	21					0	0	0.115264	0	0
CKLF	51192	broad.mit.edu	37	16	66599829	66599830	+	Missense_Mutation	DNP	GG	AA	AA	rs144099542		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:66599829_66599830GG>AA	uc002eow.2	+	4	521_522	c.374_375GG>AA	c.(373-375)GGG>GAA	p.G125E	CKLF_uc002eox.1_Intron|CKLF_uc002eot.2_Missense_Mutation_p.G93E|CKLF_uc002eou.2_Missense_Mutation_p.G72E|CKLF_uc002eov.2_Missense_Mutation_p.G40E|CMTM1_uc002epb.3_5'Flank|CMTM1_uc002epc.3_5'Flank|CMTM1_uc002epd.3_5'Flank|CMTM1_uc002epe.3_5'Flank|CMTM1_uc002epf.3_5'Flank|CMTM1_uc002epg.3_5'Flank|CMTM1_uc002eph.3_5'Flank|CMTM1_uc002epi.3_5'Flank|CMTM1_uc002epl.3_5'Flank|CMTM1_uc002epj.3_5'Flank|CMTM1_uc002epk.3_5'Flank|CMTM1_uc002epa.3_5'Flank|CMTM1_uc002epn.3_5'Flank|CMTM1_uc002epo.3_5'Flank|CMTM1_uc002epp.3_5'Flank|CMTM1_uc002epq.3_5'Flank|CMTM1_uc010cds.2_5'Flank|CMTM1_uc002epr.3_5'Flank|CMTM1_uc002epm.3_5'Flank|CMTM1_uc010cdt.1_5'Flank	NM_016951	NP_058647	Q9UBR5	CKLF_HUMAN	chemokine-like factor isoform a	125	Helical; (Potential).|MARVEL.				cell proliferation|lymphocyte chemotaxis|macrophage chemotaxis|neutrophil chemotaxis|secretion by cell	extracellular space|integral to membrane	chemokine activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0689)|Epithelial(162;0.217)		CTTGCCGACGGGGCCCTTATTT	0.441													32	64					0	0	0.115264	0	0
CDH16	1014	broad.mit.edu	37	16	66944308	66944308	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:66944308G>T	uc002eql.2	-	15	2095	c.2022C>A	c.(2020-2022)TAC>TAA	p.Y674*	CDH16_uc010cdy.2_Nonsense_Mutation_p.Y652*|CDH16_uc002eqm.2_Nonsense_Mutation_p.Y577*	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	674	Extracellular (Potential).|Ectodomain G.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GTGTGCAGAGGTATTGGGAGG	0.627													33	38					1.30998e-17	1.39047e-17	0.080422	1	0
FHOD1	29109	broad.mit.edu	37	16	67264052	67264052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:67264052C>T	uc002esl.2	-	20	3243	c.3131G>A	c.(3130-3132)CGG>CAG	p.R1044Q	FHOD1_uc002esk.2_Missense_Mutation_p.R103Q|FHOD1_uc010ced.2_Missense_Mutation_p.R851Q	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	1044					actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		AGCATCTCCCCGGCCTGGCCC	0.597													29	63					0	0	0.144211	0	0
ATP6V0D1	9114	broad.mit.edu	37	16	67487503	67487503	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:67487503G>A	uc002ete.1	-	2	346	c.246C>T	c.(244-246)TTC>TTT	p.F82F	ATP6V0D1_uc010vjo.1_Silent_p.F82F|ATP6V0D1_uc010vjn.1_Silent_p.F5F	NM_004691	NP_004682	P61421	VA0D1_HUMAN	ATPase, H+ transporting, lysosomal, V0 subunit	82					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0439)|Epithelial(162;0.101)		TCATGTGGCGGAACTCCACCA	0.532													28	34					0	0	0.125774	0	0
EDC4	23644	broad.mit.edu	37	16	67915935	67915935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:67915935C>T	uc002eur.2	+	23	3249	c.3083C>T	c.(3082-3084)TCC>TTC	p.S1028F	EDC4_uc010cer.2_Missense_Mutation_p.S647F|EDC4_uc002eus.2_Missense_Mutation_p.S758F|EDC4_uc002eut.1_5'Flank|NRN1L_uc002euu.2_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	1028					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		CAACAGTTGTCCCAAGCACTG	0.612													9	13					0	0	0.058154	0	0
SF3B3	23450	broad.mit.edu	37	16	70562804	70562804	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:70562804C>T	uc002ezf.2	+	3	310	c.99C>T	c.(97-99)TCC>TCT	p.S33S	SNORD111B_uc010cfv.1_5'Flank	NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	33					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				TTGTTGTTTCCCGTGGGAAGA	0.373													26	38					0	0	0.054565	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76555131	76555131	+	Silent	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:76555131T>C	uc002feu.1	+	18	2845	c.2460T>C	c.(2458-2460)TTT>TTC	p.F820F	CNTNAP4_uc002fev.1_Silent_p.F684F|CNTNAP4_uc010chb.1_Silent_p.F747F|CNTNAP4_uc002fex.1_Silent_p.F823F	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	820	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TATCTTTCTTTTTTAAGACAA	0.403													88	101					0	0	0.139131	0	0
BCMO1	53630	broad.mit.edu	37	16	81303936	81303936	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:81303936A>G	uc002fgn.1	+	7	1234	c.1016A>G	c.(1015-1017)AAC>AGC	p.N339S	BCMO1_uc010vnp.1_Missense_Mutation_p.N270S	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	339					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						TACCTGGCCAACCTGAACCAG	0.572													39	52					0	0	0.074837	0	0
PLCG2	5336	broad.mit.edu	37	16	81944272	81944272	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:81944272C>T	uc002fgt.2	+	18	2033	c.1881C>T	c.(1879-1881)TTC>TTT	p.F627F	PLCG2_uc010chg.1_Silent_p.F627F	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	627	SH2 1.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GCGCCGAGTTCGAGCTGCGGC	0.632													87	135					0	0	0.139131	0	0
CDH13	1012	broad.mit.edu	37	16	83712034	83712034	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:83712034G>A	uc002fgx.2	+	10	1626	c.1506G>A	c.(1504-1506)ACG>ACA	p.T502T	CDH13_uc010vns.1_Silent_p.T549T|CDH13_uc010vnt.1_Silent_p.T248T|CDH13_uc010vnu.1_Silent_p.T463T	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	502	Cadherin 4.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TGAATGCCACGGACCCCGACT	0.602													18	19					0	0	0.033300	0	0
KLHDC4	54758	broad.mit.edu	37	16	87744986	87744986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:87744986G>A	uc002fki.2	-	9	945	c.899C>T	c.(898-900)TCC>TTC	p.S300F	KLHDC4_uc002fkh.1_5'Flank|KLHDC4_uc010cht.1_Missense_Mutation_p.S119F|KLHDC4_uc002fkj.2_Missense_Mutation_p.S269F|KLHDC4_uc002fkk.2_Missense_Mutation_p.S119F|KLHDC4_uc002fkl.2_Missense_Mutation_p.S243F|KLHDC4_uc010chu.1_Missense_Mutation_p.S119F	NM_017566	NP_060036	Q8TBB5	KLDC4_HUMAN	kelch domain containing 4	300										pancreas(2)	2				BRCA - Breast invasive adenocarcinoma(80;0.0283)		CATGGCCACGGAAAAGCCAGA	0.557													28	26					0	0	0.045705	0	0
ZC3H18	124245	broad.mit.edu	37	16	88664701	88664701	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:88664701C>T	uc002fky.2	+	4	1004	c.804C>T	c.(802-804)CTC>CTT	p.L268L	ZC3H18_uc010voy.1_Silent_p.L151L|ZC3H18_uc010voz.1_Silent_p.L292L	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	268	Pro-rich.					nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		CCCCGCCTCTCGGACCTCACC	0.537													38	58					0	0	0.104719	0	0
CDH15	1013	broad.mit.edu	37	16	89254573	89254573	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:89254573G>A	uc002fmt.2	+	7	935	c.858G>A	c.(856-858)AGG>AGA	p.R286R		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	286	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		TGGAGGACAGGGACCTGCCAG	0.642													10	14					0	0	0.105934	0	0
ZNF778	197320	broad.mit.edu	37	16	89294965	89294965	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr16:89294965T>A	uc002fmv.2	+	6	2524	c.2185T>A	c.(2185-2187)TTC>ATC	p.F729I	ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Missense_Mutation_p.F687I|ZNF778_uc010vpg.1_Missense_Mutation_p.F492I	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	729					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		TGAGAAACCTTTCTAATGTAA	0.408													31	27					0	0	0.059317	0	0
SERPINF2	5345	broad.mit.edu	37	17	1649139	1649139	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:1649139C>T	uc002ftk.1	+	5	380	c.303C>T	c.(301-303)TCC>TCT	p.S101S	SERPINF2_uc010vqr.1_Intron	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor	101					acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	CTCAAACGTCCACCTGCCCCA	0.637													40	55					0	0	0.111260	0	0
SMYD4	114826	broad.mit.edu	37	17	1686396	1686396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:1686396G>A	uc002ftm.3	-	10	2362	c.2194C>T	c.(2194-2196)CGC>TGC	p.R732C	SMYD4_uc002ftn.1_Missense_Mutation_p.R587C	NM_052928	NP_443160	Q8IYR2	SMYD4_HUMAN	SET and MYND domain containing 4	732							zinc ion binding			skin(3)|kidney(2)	5						GGCCCGTGGCGAACCTCCACC	0.512													40	46					0	0	0.111260	0	0
SHPK	23729	broad.mit.edu	37	17	3524682	3524682	+	Silent	SNP	G	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:3524682G>C	uc002fvz.1	-	5	775	c.672C>G	c.(670-672)GTC>GTG	p.V224V		NM_013276	NP_037408	Q9UHJ6	SHPK_HUMAN	carbohydrate kinase-like	224					carbohydrate metabolic process	cytoplasm	ATP binding|sedoheptulokinase activity			ovary(1)	1				COAD - Colon adenocarcinoma(5;0.0828)		GGAGCAGGTGGACAGGAAAAC	0.517													22	31					0	0	0.076483	0	0
SPNS3	201305	broad.mit.edu	37	17	4348463	4348463	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:4348463G>A	uc002fxt.2	+	3	446	c.402G>A	c.(400-402)CGG>CGA	p.R134R	SPNS3_uc002fxu.2_Intron	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	134					lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						TCTCCCCCCGGGTACGTGTCC	0.627													14	35					0	0	0.146539	0	0
ALOX15	246	broad.mit.edu	37	17	4542411	4542411	+	Silent	SNP	C	T	T	rs141412026		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:4542411C>T	uc002fyh.2	-	3	368	c.354G>A	c.(352-354)GAG>GAA	p.E118E	ALOX15_uc010vsd.1_Silent_p.E79E|ALOX15_uc010vse.1_Silent_p.E140E	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	118	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	CCTGAGGGTCCTCGCCCACAG	0.607													56	97					0	0	0.139131	0	0
TM4SF5	9032	broad.mit.edu	37	17	4685877	4685877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:4685877G>A	uc002fyw.1	+	3	369	c.338G>A	c.(337-339)CGA>CAA	p.R113Q		NM_003963	NP_003954	O14894	T4S5_HUMAN	transmembrane 4 superfamily member 5	113	Extracellular (Potential).					integral to plasma membrane				ovary(1)	1						GCTGGGCTCCGAAATGGACCC	0.577													18	37					0	0	0.043863	0	0
GP1BA	2811	broad.mit.edu	37	17	4836950	4836950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:4836950G>A	uc010vsq.1	+	2	1126	c.1051G>A	c.(1051-1053)GAG>AAG	p.E351K	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	351											0						ATCCACTAAGGAGCAGACCAC	0.488													90	85					0	0	0.139131	0	0
ZFP3	124961	broad.mit.edu	37	17	4995940	4995940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:4995940C>T	uc002gaq.2	+	2	1266	c.1141C>T	c.(1141-1143)CTT>TTT	p.L381F		NM_153018	NP_694563	Q96NJ6	ZFP3_HUMAN	zinc finger protein-3	381	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTCAGAACTTCTTAGACATGA	0.438													19	27					0	0	0.049695	0	0
USP6	9098	broad.mit.edu	37	17	5076225	5076225	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:5076225G>A	uc002gau.1	+	38	6403	c.4173G>A	c.(4171-4173)ACG>ACA	p.T1391T	USP6_uc002gav.1_Silent_p.T1391T|USP6_uc010ckz.1_Silent_p.T1074T	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	1391					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CAAGCAGTACGGATGAAGACT	0.468			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								29	43					0	0	0.116897	0	0
KCTD11	147040	broad.mit.edu	37	17	7256413	7256414	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:7256413_7256414AC>CT	uc002gge.3	+	1	1206_1207	c.152_153AC>CT	c.(151-153)TAC>TCT	p.Y51S	TMEM95_uc002ggf.1_5'Flank|TMEM95_uc002ggg.1_5'Flank|TMEM95_uc002ggh.1_5'Flank	NM_001002914	NP_001002914	Q693B1	KCD11_HUMAN	potassium channel tetramerisation domain	51					cell cycle|regulation of growth	voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Prostate(122;0.157)				CCCCGTGGGTACGGAGAGACAG	0.663													10	12					0	0	0.115264	0	0
NLGN2	57555	broad.mit.edu	37	17	7319288	7319288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:7319288C>T	uc002ggt.1	+	6	1569	c.1496C>T	c.(1495-1497)GCG>GTG	p.A499V		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	499	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				GCAGATGCGGCGCACGGGGAT	0.612													17	38					0	0	0.043863	0	0
EFNB3	1949	broad.mit.edu	37	17	7611453	7611453	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:7611453C>T	uc002gis.2	+	2	697	c.300C>T	c.(298-300)CTC>CTT	p.L100L		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	100	Extracellular (Potential).				cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				CCCCAAACCTCCTTCTCACTT	0.592													52	82					0	0	0.139131	0	0
DNAH2	146754	broad.mit.edu	37	17	7678168	7678168	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:7678168C>T	uc002giu.1	+	28	4607	c.4593C>T	c.(4591-4593)TTC>TTT	p.F1531F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1531	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GACATATTTTCCCCCGCTTCT	0.458													37	43					0	0	0.074837	0	0
DNAH2	146754	broad.mit.edu	37	17	7691242	7691242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:7691242G>A	uc002giu.1	+	42	6682	c.6668G>A	c.(6667-6669)GGG>GAG	p.G2223E		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2223	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TCCCGCTGCGGGATGGTCTAC	0.527													24	36					0	0	0.076483	0	0
MYH10	4628	broad.mit.edu	37	17	8508201	8508201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:8508201C>T	uc002gll.2	-	3	541	c.445G>A	c.(445-447)GAG>AAG	p.E149K	MYH10_uc002glm.2_Missense_Mutation_p.E149K|MYH10_uc010cnx.2_Missense_Mutation_p.E149K	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	149	Myosin head-like.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						GGAGGCATCTCATGACGCTTC	0.348													30	46					0	0	0.059317	0	0
MYH13	8735	broad.mit.edu	37	17	10267715	10267715	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:10267715C>G	uc002gmk.1	-	3	223	c.133G>C	c.(133-135)GAA>CAA	p.E45Q		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	45	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						ACATACATTTCCTTATTATCC	0.448													9	20					0	0	0.080935	0	0
MYH8	4626	broad.mit.edu	37	17	10295884	10295884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:10295884C>T	uc002gmm.2	-	38	5638	c.5543G>A	c.(5542-5544)CGA>CAA	p.R1848Q	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1848	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTTTACTCGTCGCTCATGTTT	0.408									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				53	78					0	0	0.139131	0	0
MYH1	4619	broad.mit.edu	37	17	10398588	10398588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:10398588G>A	uc002gmo.2	-	36	5310	c.5216C>T	c.(5215-5217)TCC>TTC	p.S1739F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1739	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTGGATTTGGGAAATGTCTGT	0.433													49	64					0	0	0.139131	0	0
MYH2	4620	broad.mit.edu	37	17	10429969	10429969	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:10429969C>T	uc010coi.2	-	30	4262	c.4134G>A	c.(4132-4134)AGG>AGA	p.R1378R	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.R1378R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1378	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CGTATTTGGTCCTCCATTGGG	0.542													60	101					0	0	0.139131	0	0
MYH3	4621	broad.mit.edu	37	17	10541731	10541731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:10541731C>T	uc002gmq.1	-	26	3435	c.3358G>A	c.(3358-3360)GAA>AAA	p.E1120K		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1120	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						ATCTCCTCTTCCAGCTCCTCA	0.637													15	21					0	0	0.033300	0	0
MYH3	4621	broad.mit.edu	37	17	10558265	10558265	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:10558265G>A	uc002gmq.1	-	2	194	c.117C>T	c.(115-117)TTC>TTT	p.F39F		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	39	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						AGTCCACCACGAAGCAATACG	0.493													80	105					0	0	0.139131	0	0
ZNF18	7566	broad.mit.edu	37	17	11881676	11881676	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:11881676G>A	uc002gng.1	-	9	1853	c.1248C>T	c.(1246-1248)ACC>ACT	p.T416T	ZNF18_uc002gnh.1_Silent_p.T416T|ZNF18_uc002gni.1_Silent_p.T415T	NM_144680	NP_653281	P17022	ZNF18_HUMAN	zinc finger protein 18	416	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1				Colorectal(4;3.33e-05)|COAD - Colon adenocarcinoma(4;0.000494)|READ - Rectum adenocarcinoma(10;0.233)		TCCTATAAAAGGTCTTCCCAC	0.522													42	66					0	0	0.131918	0	0
MYOCD	93649	broad.mit.edu	37	17	12639565	12639565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:12639565G>A	uc002gnn.2	+	6	802	c.503G>A	c.(502-504)CGA>CAA	p.R168Q	MYOCD_uc002gno.2_Missense_Mutation_p.R168Q|MYOCD_uc002gnp.1_Missense_Mutation_p.R72Q	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	168	HDAC5-binding (By similarity).				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GATCAGACTCGAAGTGAAGAC	0.527													83	109					0	0	0.139131	0	0
MYOCD	93649	broad.mit.edu	37	17	12656125	12656125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:12656125C>T	uc002gnn.2	+	10	1819	c.1520C>T	c.(1519-1521)CCT>CTT	p.P507L	MYOCD_uc002gno.2_Missense_Mutation_p.P507L|MYOCD_uc002gnp.1_Missense_Mutation_p.P411L|MYOCD_uc002gnq.2_Missense_Mutation_p.P226L	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	507	Ser-rich.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GGCTCTGTTCCTTCTGAGCTG	0.572													11	19					0	0	0.080935	0	0
TEKT3	64518	broad.mit.edu	37	17	15212126	15212126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:15212126C>T	uc002gon.2	-	8	1298	c.1111G>A	c.(1111-1113)GAG>AAG	p.E371K		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	371					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		TGGAAAATCTCCTGCAGGGTC	0.537													31	45					0	0	0.064281	0	0
CCDC144A	9720	broad.mit.edu	37	17	16612250	16612250	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:16612250C>T	uc002gqk.1	+	5	955	c.879C>T	c.(877-879)CTC>CTT	p.L293L	CCDC144A_uc002gql.1_Intron|LOC162632_uc010cpj.1_5'Flank	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	293											0						AATTAAAACTCGTCATAAATG	0.363													26	42					0	0	0.064281	0	0
RAI1	10743	broad.mit.edu	37	17	17698096	17698096	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:17698096C>T	uc002grm.2	+	3	2303	c.1834C>T	c.(1834-1836)CTG>TTG	p.L612L	RAI1_uc002grn.1_Silent_p.L612L	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	612						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		CTCCGAGATCCTGGGGCTGCA	0.647													25	27					0	0	0.076483	0	0
RAI1	10743	broad.mit.edu	37	17	17699012	17699012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:17699012C>T	uc002grm.2	+	3	3219	c.2750C>T	c.(2749-2751)CCG>CTG	p.P917L	RAI1_uc002grn.1_Missense_Mutation_p.P917L	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	917						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		TGGGGCTCTCCGTGCCACCTC	0.632													14	18					0	0	0.132662	0	0
MYO15A	51168	broad.mit.edu	37	17	18022448	18022448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:18022448C>T	uc010vxh.1	+	2	672	c.334C>T	c.(334-336)CCA>TCA	p.P112S		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	112	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GATCCGCTTCCCAGGCCGCCG	0.612													8	9					0	0	0.047766	0	0
FLII	2314	broad.mit.edu	37	17	18160274	18160274	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:18160274G>A	uc002gsr.1	-	2	174	c.123C>T	c.(121-123)AAC>AAT	p.N41N	FLII_uc002gsq.1_5'Flank|FLII_uc010cpy.1_Silent_p.N30N|FLII_uc010vxn.1_Silent_p.N10N|FLII_uc010vxo.1_Silent_p.N41N|FLII_uc002gss.1_Silent_p.N41N	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	41	Interaction with LRRFIP1 and LRRFIP2.|LRR 2.				multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					GGCCAGTGCGGTTCAGCTTCA	0.647													5	18					0	0	0.038147	0	0
ALDH3A1	218	broad.mit.edu	37	17	19642820	19642820	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:19642820C>T	uc010cqu.2	-	7	1446	c.1116_splice	c.e7+1	p.K372_splice	ALDH3A1_uc010vzd.1_Splice_Site_p.K372_splice|ALDH3A1_uc002gwj.2_Splice_Site_p.K372_splice|ALDH3A1_uc010cqv.2_Splice_Site_p.K371_splice|ALDH3A1_uc002gwk.2_Splice_Site_p.K489_splice|ALDH3A1_uc002gwl.1_Splice_Site_p.K299_splice	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1						cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	CCACCACCCACCTTGTCGTTG	0.418													9	12					0	0	0.058154	0	0
SLC46A1	113235	broad.mit.edu	37	17	26732175	26732175	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:26732175C>T	uc002hbf.1	-	2	636	c.540G>A	c.(538-540)CGG>CGA	p.R180R	SLC46A1_uc002hbg.1_Silent_p.R180R|SLC46A1_uc010wak.1_Silent_p.R180R	NM_080669	NP_542400	Q96NT5	PCFT_HUMAN	proton-coupled folate transporter	180					cellular iron ion homeostasis|folic acid metabolic process	apical plasma membrane|cytoplasm|integral to membrane	folic acid binding|folic acid transporter activity|heme transporter activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Folic Acid(DB00158)	GCAGGGCCATCCGGAAGGTGC	0.667													6	7					0	0	0.021553	0	0
FOXN1	8456	broad.mit.edu	37	17	26851638	26851638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:26851638C>T	uc010crm.2	+	3	439	c.241C>T	c.(241-243)CAC>TAC	p.H81Y	FOXN1_uc002hbj.2_Missense_Mutation_p.H81Y	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	81					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					AGTCCAGGGCCACTGCCCAGC	0.677													18	23					0	0	0.033300	0	0
NF1	4763	broad.mit.edu	37	17	29556163	29556163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:29556163C>T	uc002hgg.2	+	21	2863	c.2530C>T	c.(2530-2532)CTT>TTT	p.L844F	NF1_uc002hgh.2_Missense_Mutation_p.L844F|NF1_uc010csn.1_Missense_Mutation_p.L704F|NF1_uc002hgi.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	844			L -> F (in NF1).|L -> P (in NF1).|L -> R (in NF1; sporadic).		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GACTGGCTTCCTTTGTGCCCT	0.517			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			22	21					0	0	0.055883	0	0
NF1	4763	broad.mit.edu	37	17	29654857	29654858	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:29654857_29654858GG>AA	uc002hgg.2	+	38	5942	c.5609_splice	c.e38+1	p.R1870_splice	NF1_uc002hgh.2_Splice_Site_p.R1849_splice|NF1_uc002hgi.1_Splice_Site_p.R882_splice|NF1_uc010cso.2_Splice_Site_p.R58_splice	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1						actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.S1871fs*13(1)|p.?(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CCGAGTTTACGGTAGGTTTTTT	0.376			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			19	35					0	0	0.115264	0	0
LIG3	3980	broad.mit.edu	37	17	33326328	33326328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:33326328G>A	uc002hik.1	+	15	2224	c.2116G>A	c.(2116-2118)GGC>AGC	p.G706S	LIG3_uc002hij.2_Missense_Mutation_p.G706S	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	706					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	CCTCCCAGGCGGCATGATGTC	0.522								Other_BER_factors					17	33					0	0	0.043863	0	0
AMAC1	146861	broad.mit.edu	37	17	33520670	33520670	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:33520670G>A	uc002hjd.2	-	1	743	c.657C>T	c.(655-657)CTC>CTT	p.L219L		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	219						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CCACTGTTGGGAGGCAGGGGG	0.627													44	50					0	0	0.124865	0	0
MYO19	80179	broad.mit.edu	37	17	34856752	34856752	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:34856752G>A	uc010wcy.1	-	24	3287	c.2295C>T	c.(2293-2295)GCC>GCT	p.A765A	MYO19_uc002hmw.2_Silent_p.A565A|MYO19_uc010cuu.2_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	765	IQ 1.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GGATGCAGCGGGCACACTGCT	0.672													6	8					0	0	0.021553	0	0
Unknown	0	broad.mit.edu	37	17	37187924	37187924	+	RNA	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:37187924C>G	uc002hrd.1	+	1		c.1766C>G								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		GGAGGTTGAACCTTTTCCAAC	0.483													17	21					0	0	0.033300	0	0
CACNB1	782	broad.mit.edu	37	17	37333757	37333757	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:37333757T>C	uc002hrm.1	-	13	1331	c.1178A>G	c.(1177-1179)CAA>CGA	p.Q393R	CACNB1_uc002hrl.1_Missense_Mutation_p.Q165R|CACNB1_uc002hrn.2_Missense_Mutation_p.Q393R|CACNB1_uc002hro.2_Missense_Mutation_p.Q438R	NM_000723	NP_000714	Q02641	CACB1_HUMAN	calcium channel, voltage-dependent, beta 1	393					axon guidance	voltage-gated calcium channel complex				large_intestine(1)|ovary(1)	2					Ibutilide(DB00308)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Verapamil(DB00661)	ATCCTCCAATTGGTTCTCATC	0.607													16	23					0	0	0.038395	0	0
PNMT	5409	broad.mit.edu	37	17	37826577	37826577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:37826577C>T	uc002hsi.1	+	3	1006	c.784C>T	c.(784-786)CTT>TTT	p.L262F		NM_002686	NP_002677	P11086	PNMT_HUMAN	phenylethanolamine N-methyltransferase	262					catecholamine biosynthetic process|hormone biosynthetic process	cytosol	phenylethanolamine N-methyltransferase activity			ovary(1)	1	all_cancers(6;6.59e-85)|all_epithelial(6;2.89e-103)|Breast(7;1.05e-86)|Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;3.87e-45)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GCCTGCCCACCTTCAGACAGG	0.632													10	14					0	0	0.080935	0	0
WIPF2	147179	broad.mit.edu	37	17	38416912	38416912	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:38416912C>T	uc002hug.1	+	3	429	c.189C>T	c.(187-189)ATC>ATT	p.I63I	WIPF2_uc010cwv.1_Silent_p.I63I|WIPF2_uc002huh.1_Intron|WIPF2_uc010cww.1_5'UTR|WIPF2_uc002hui.1_Silent_p.I63I|WIPF2_uc010cwx.1_Silent_p.I63I|WIPF2_uc010cwy.1_Silent_p.I63I	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	63						cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						GTGCTCCCATCCTCGAGAGTG	0.517										HNSCC(43;0.11)			19	19					0	0	0.062417	0	0
KRTAP4-2	85291	broad.mit.edu	37	17	39334373	39334373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:39334373C>T	uc002hwd.2	-	1	88	c.44G>A	c.(43-45)TGT>TAT	p.C15Y		NM_033062	NP_149051	Q9BYR5	KRA42_HUMAN	keratin associated protein 4-2	15	20 X 5 AA repeats OF C-C-[GRQVS]-[SPT]- [VSTQ].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			CTCTAGGCCACAGCCCTGGTC	0.612													34	56					0	0	0.069456	0	0
KRT33B	3884	broad.mit.edu	37	17	39525754	39525754	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:39525754C>T	uc002hwl.2	-	1	294	c.249G>A	c.(247-249)GAG>GAA	p.E83E		NM_002279	NP_002270	Q14525	KT33B_HUMAN	type I hair keratin 3B	83	Coil 1A.|Rod.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				GGTTCTCCAGCTCCGCGTTGT	0.607													34	42					0	0	0.069456	0	0
KRT37	8688	broad.mit.edu	37	17	39580346	39580346	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:39580346C>A	uc002hwp.1	-	1	477	c.430G>T	c.(430-432)GAG>TAG	p.E144*	uc002hwo.1_RNA	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	144	Linker 1.|Rod.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				ACGGTGGACTCGTGGCACTTG	0.607													25	52					2.27525e-19	2.417e-19	0.091800	1	0
RAB5C	5878	broad.mit.edu	37	17	40280339	40280339	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:40280339G>A	uc002hyz.2	-	5	698	c.381C>T	c.(379-381)ATC>ATT	p.I127I	RAB5C_uc002hza.2_Silent_p.I127I|RAB5C_uc010cxx.2_Silent_p.I160I|RAB5C_uc010cxy.2_Silent_p.I39I	NM_201434	NP_958842	P51148	RAB5C_HUMAN	RAB5C, member RAS oncogene family isoform a	127					protein transport|small GTPase mediated signal transduction	early endosome membrane|melanosome|plasma membrane	GTP binding|GTPase activity|protein binding			large_intestine(1)|skin(1)	2		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		GTGCAATGACGATGTTGGGGC	0.567													51	69					0	0	0.139131	0	0
STAT5A	6776	broad.mit.edu	37	17	40456591	40456592	+	Missense_Mutation	DNP	CC	TT	TT	rs150767426		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:40456591_40456592CC>TT	uc002hzj.1	+	12	1943_1944	c.1301_1302CC>TT	c.(1300-1302)TCC>TTT	p.S434F	STAT5A_uc010cya.1_Missense_Mutation_p.S434F|STAT5A_uc010cyb.1_Missense_Mutation_p.S434F|STAT5A_uc010cyc.1_Missense_Mutation_p.S404F|STAT5A_uc010cyd.1_5'Flank|STAT5A_uc010cye.1_5'Flank	NM_003152	NP_003143	P42229	STA5A_HUMAN	signal transducer and activator of transcription	434					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|oxaloacetate metabolic process|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1		all_cancers(22;1.56e-06)|all_epithelial(22;3.17e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		GGTGCAGAGTCCGTGACAGAGG	0.579													17	43					0	0	0.115264	0	0
MPP2	4355	broad.mit.edu	37	17	41957311	41957312	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:41957311_41957312CC>TT	uc010wip.1	-	11	1383_1384	c.1326_1327GG>AA	c.(1324-1329)CAGGGT>CAAAGT	p.G443S	MPP2_uc002ien.1_Missense_Mutation_p.G415S|MPP2_uc010wim.1_Missense_Mutation_p.G387S|MPP2_uc002ieo.1_Missense_Mutation_p.G398S|MPP2_uc010win.1_Missense_Mutation_p.G259S|MPP2_uc010wio.1_Missense_Mutation_p.G387S	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	422	Guanylate kinase-like.				signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		AAGCTGTAACCCTGACCTTCCC	0.609											OREG0024443	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	52					0	0	0.115264	0	0
IMP5	162540	broad.mit.edu	37	17	43922713	43922713	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:43922713C>T	uc010wka.1	+	1	441	c.441C>T	c.(439-441)ACC>ACT	p.T147T	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	147	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		CAGACCTCACCATCCCTGTGG	0.657													16	23					0	0	0.132662	0	0
HOXB4	3214	broad.mit.edu	37	17	46655307	46655307	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:46655307G>A	uc002inp.2	-	1	437	c.375C>T	c.(373-375)AAC>AAT	p.N125N	HOXB3_uc010wlm.1_Intron|HOXB3_uc010dbf.2_Intron|HOXB3_uc010dbg.2_Intron|HOXB3_uc010wlk.1_5'Flank|HOXB3_uc010wll.1_Intron	NM_024015	NP_076920	P17483	HXB4_HUMAN	homeobox B4	125	Pro-rich (part of the transcriptional activation domain).					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGTGCAGGGGGTTCTGGGCGC	0.751													40	20					0	0	0.131918	0	0
ZNF652	22834	broad.mit.edu	37	17	47394220	47394220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:47394220G>A	uc002iov.3	-	2	1332	c.868C>T	c.(868-870)CAC>TAC	p.H290Y	ZNF652_uc002iow.2_Missense_Mutation_p.H290Y|ZNF652_uc002iou.3_Intron	NM_001145365	NP_001138837	Q9Y2D9	ZN652_HUMAN	zinc finger protein 652	290	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_cancers(4;6.81e-14)|Breast(4;4.97e-29)|all_epithelial(4;1.53e-17)		BRCA - Breast invasive adenocarcinoma(1;3.1e-14)|Epithelial(5;2.92e-06)|all cancers(6;3.15e-05)			GTTTGCTGGTGAAGGGACAGC	0.448													32	88					0	0	0.074837	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48598488	48598488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:48598488G>A	uc010wmr.1	+	8	1225	c.1063G>A	c.(1063-1065)GAC>AAC	p.D355N	MYCBPAP_uc002iqx.2_Missense_Mutation_p.D355N|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	318					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			AGCCCAGAGGGACGCTTCATA	0.567													10	10					0	0	0.080935	0	0
ABCC3	8714	broad.mit.edu	37	17	48733283	48733283	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:48733283T>G	uc002isl.2	+	2	216	c.136T>G	c.(136-138)TGG>GGG	p.W46G	ABCC3_uc002isk.3_Missense_Mutation_p.W46G	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	46	Helical; Name=1; (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CATCTACCTGTGGGTCGCCCT	0.602													36	72					0	0	0.080422	0	0
ANKRD40	91369	broad.mit.edu	37	17	48778020	48778020	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:48778020T>A	uc002iso.2	-	2	447	c.192A>T	c.(190-192)TTA>TTT	p.L64F		NM_052855	NP_443087	Q6AI12	ANR40_HUMAN	ankyrin repeat domain 40	64	ANK 2.										0			BRCA - Breast invasive adenocarcinoma(22;2.03e-09)			CTCCTGATTTTAACAGGTAAG	0.398													50	49					0	0	0.139131	0	0
CUEDC1	404093	broad.mit.edu	37	17	55962736	55962736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:55962736C>T	uc002ivd.1	-	2	909	c.190G>A	c.(190-192)GAC>AAC	p.D64N	CUEDC1_uc002ive.1_Missense_Mutation_p.D64N	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1	64	CUE.									skin(2)	2						TCGATGATGTCGTAATCCATG	0.632													5	95					0	0	0.021553	0	0
LPO	4025	broad.mit.edu	37	17	56332270	56332270	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:56332270C>A	uc002ivt.2	+	9	1520	c.1204C>A	c.(1204-1206)CCT>ACT	p.P402T	LPO_uc010wns.1_Missense_Mutation_p.P343T|LPO_uc010dcp.2_Missense_Mutation_p.P319T|LPO_uc010dcq.2_Missense_Mutation_p.P73T|LPO_uc010dcr.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	402					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GAGACTCAACCCTCAGTGGGA	0.572													49	108					1.32667e-27	1.41046e-27	0.139131	1	0
BZRAP1	9256	broad.mit.edu	37	17	56384174	56384174	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:56384174G>A	uc002ivx.3	-	25	6010	c.5139C>T	c.(5137-5139)CTC>CTT	p.L1713L	BZRAP1_uc002ivv.2_5'Flank|BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Silent_p.L1653L|BZRAP1_uc010wnt.1_Silent_p.L1713L	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1713						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AGCCCTCAAGGAGAATATCTG	0.592													14	20					0	0	0.105934	0	0
HSF5	124535	broad.mit.edu	37	17	56540296	56540296	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:56540296G>A	uc002iwi.1	-	4	1513	c.1389C>T	c.(1387-1389)ACC>ACT	p.T463T		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	463						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTGTGTGGATGGTATAGATGT	0.448													86	71					0	0	0.139131	0	0
PTRH2	51651	broad.mit.edu	37	17	57775240	57775240	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:57775240G>A	uc002ixt.2	-	2	225	c.100C>T	c.(100-102)CGA>TGA	p.R34*	PTRH2_uc002ixs.2_RNA	NM_016077	NP_057161	Q9Y3E5	PTH2_HUMAN	Bcl-2 inhibitor of transcription precursor	34					apoptosis|translation	mitochondrion	aminoacyl-tRNA hydrolase activity				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					AAGCATACTCGAAGGCTCCAG	0.512													14	37					0	0	0.132662	0	0
RNFT1	51136	broad.mit.edu	37	17	58034687	58034687	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:58034687G>A	uc002iya.2	-	6	996	c.903C>T	c.(901-903)CCC>CCT	p.P301P	RNFT1_uc002iyb.2_RNA|RNFT1_uc002iyc.2_Silent_p.P39P	NM_016125	NP_057209	Q5M7Z0	RNFT1_HUMAN	PTD016 protein	301	Helical; (Potential).					integral to membrane	zinc ion binding				0	all_cancers(5;1.58e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;7.95e-12)|all cancers(12;1.34e-10)			AAACTGGTATGGGAACAAAAG	0.368													28	42					0	0	0.134883	0	0
USP32	84669	broad.mit.edu	37	17	58300851	58300851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:58300851C>T	uc002iyo.1	-	14	1815	c.1529G>A	c.(1528-1530)GGG>GAG	p.G510E	USP32_uc002iyn.1_Missense_Mutation_p.G180E	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	510	DUSP.				protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			CAAAATATTCCCATTGGCTCC	0.408													29	101					0	0	0.144211	0	0
TANC2	26115	broad.mit.edu	37	17	61499089	61499089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:61499089G>A	uc002jal.3	+	25	5769	c.5746G>A	c.(5746-5748)GAG>AAG	p.E1916K	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Missense_Mutation_p.E1027K	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1916							binding			ovary(2)	2						CCATTTGCTGGAGGACGATTA	0.532													51	26					0	0	0.139131	0	0
KCNH6	81033	broad.mit.edu	37	17	61621705	61621705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:61621705G>A	uc002jay.2	+	12	2517	c.2437G>A	c.(2437-2439)GAA>AAA	p.E813K	KCNH6_uc010wpl.1_Missense_Mutation_p.E654K|KCNH6_uc010wpm.1_Missense_Mutation_p.E777K|KCNH6_uc002jaz.1_Missense_Mutation_p.E724K	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	813	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	AAGCCCTCAGGAAGACCCAGA	0.622													41	16					0	0	0.092188	0	0
FTSJ3	117246	broad.mit.edu	37	17	61898924	61898924	+	Missense_Mutation	SNP	C	T	T	rs142875570		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:61898924C>T	uc002jbz.2	-	15	1754	c.1676G>A	c.(1675-1677)CGG>CAG	p.R559Q	FTSJ3_uc002jca.2_Missense_Mutation_p.R559Q	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	559					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						CCGTCCCTTCCGCCGGTTCTC	0.567													28	63					0	0	0.108266	0	0
CD300E	342510	broad.mit.edu	37	17	72613400	72613400	+	Missense_Mutation	SNP	G	A	A	rs148103699		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:72613400G>A	uc002jlb.1	-	2	286	c.245C>T	c.(244-246)CCG>CTG	p.P82L		NM_181449	NP_852114	Q496F6	CLM2_HUMAN	CD300e molecule precursor	82	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GAGAGCCTCCGGGTGGTCTCT	0.537													78	61					0	0	0.139131	0	0
UNK	85451	broad.mit.edu	37	17	73812881	73812881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:73812881C>T	uc002jpm.2	+	9	1220	c.1220C>T	c.(1219-1221)TCC>TTC	p.S407F		NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	331							nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTGCAGCCTTCCTCAGCTGTG	0.662													11	24					0	0	0.105934	0	0
RNF157	114804	broad.mit.edu	37	17	74151745	74151745	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:74151745G>A	uc002jqz.2	-	15	1665	c.1596C>T	c.(1594-1596)GTC>GTT	p.V532V	RNF157_uc002jra.2_Silent_p.V532V|uc002jrb.1_RNA	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	532	Ser-rich.						zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			ACATGGAGGAGACGGTGTCAG	0.627													9	21					0	0	0.047766	0	0
RNF157	114804	broad.mit.edu	37	17	74236267	74236267	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:74236267A>C	uc002jqz.2	-	1	124	c.55T>G	c.(55-57)TCT>GCT	p.S19A	RNF157_uc002jra.2_Missense_Mutation_p.S19A	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	19							zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			ACGGAATTAGACGGGATGTCC	0.632													4	15					0	0	0.009096	0	0
QRICH2	84074	broad.mit.edu	37	17	74288700	74288700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:74288700G>A	uc002jrd.1	-	4	1790	c.1610C>T	c.(1609-1611)CCT>CTT	p.P537L	QRICH2_uc010wsz.1_Missense_Mutation_p.P463L|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	537	Gln-rich.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						ATCTGCACCAGGTTGCACCAC	0.517													41	80					0	0	0.111260	0	0
AANAT	15	broad.mit.edu	37	17	74464885	74464885	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:74464885G>A	uc002jro.2	+	2	291	c.57G>A	c.(55-57)GGG>GGA	p.G19G	AANAT_uc010wte.1_RNA	NM_001088	NP_001079	Q16613	SNAT_HUMAN	arylalkylamine N-acetyltransferase	19					circadian rhythm|melatonin biosynthetic process	cytosol	aralkylamine N-acetyltransferase activity				0						TGCCACCTGGGATCCCCGAGT	0.662													8	22					0	0	0.038147	0	0
MGAT5B	146664	broad.mit.edu	37	17	74936821	74936821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:74936821C>T	uc002jti.2	+	13	1869	c.1766C>T	c.(1765-1767)TCC>TTC	p.S589F	MGAT5B_uc002jth.2_Missense_Mutation_p.S578F	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	580	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						CAGGTGTTCTCCCAGCATCCC	0.542													102	55					0	0	0.139131	0	0
USP36	57602	broad.mit.edu	37	17	76823413	76823413	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:76823413G>A	uc002jvz.1	-	6	928	c.603C>T	c.(601-603)TTC>TTT	p.F201F	USP36_uc002jwa.1_Silent_p.F201F|USP36_uc002jwd.1_Silent_p.F201F	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	201					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			TCCCAAAGCGGAAGTGTCGGG	0.572													4	24					0	0	0.014758	0	0
TMEM105	284186	broad.mit.edu	37	17	79288207	79288207	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:79288207C>T	uc002kad.1	-	2	605	c.55_splice	c.e2+1	p.G19_splice		NM_178520	NP_848615	Q8N8V8	TM105_HUMAN	transmembrane protein 105							integral to membrane				ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.0892)			GGTGCACAGACCTTGGTGTGG	0.637													6	22					0	0	0.029380	0	0
FASN	2194	broad.mit.edu	37	17	80038593	80038593	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:80038593G>A	uc002kdu.2	-	39	6918	c.6801C>T	c.(6799-6801)CCC>CCT	p.P2267P	FASN_uc002kdv.1_RNA	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	2267	Thioesterase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GGCCATAGGTGGGGATGCTGA	0.682													8	15					0	0	0.047766	0	0
TUBB6	84617	broad.mit.edu	37	18	12325671	12325671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:12325671G>A	uc002kqw.2	+	4	928	c.883G>A	c.(883-885)GAC>AAC	p.D295N	TUBB6_uc002kqv.2_Missense_Mutation_p.D223N|TUBB6_uc010dld.2_RNA|TUBB6_uc002kqx.2_Missense_Mutation_p.D258N|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	295					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		GCAGATGTTCGACGCCAGGAA	0.682													10	36					0	0	0.069234	0	0
TUBB6	84617	broad.mit.edu	37	18	12325866	12325866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:12325866G>A	uc002kqw.2	+	4	1123	c.1078G>A	c.(1078-1080)GGC>AGC	p.G360S	TUBB6_uc002kqv.2_Missense_Mutation_p.G288S|TUBB6_uc002kqx.2_Missense_Mutation_p.G323S|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	360					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		CCCGCCCCGCGGCCTGAAGAT	0.607													74	112					0	0	0.139131	0	0
POTEC	388468	broad.mit.edu	37	18	14513675	14513675	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:14513675T>C	uc010dln.2	-	10	1973	c.1519A>G	c.(1519-1521)AAA>GAA	p.K507E	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	507	Potential.									skin(3)	3						GAATTCATTTTCTTTTCAGCC	0.284													3	86					0	0	0.115264	0	0
NPC1	4864	broad.mit.edu	37	18	21141479	21141479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:21141479G>A	uc002kum.3	-	5	750	c.476C>T	c.(475-477)GCC>GTC	p.A159V	NPC1_uc010xaz.1_5'Flank|NPC1_uc010xba.1_Missense_Mutation_p.A4V	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	159					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					ATCCCGGCAGGCATTGTACAT	0.502													66	59					0	0	0.139131	0	0
AQP4	361	broad.mit.edu	37	18	24440760	24440760	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:24440760G>A	uc002kwa.2	-	4	732	c.669C>T	c.(667-669)ATC>ATT	p.I223I	AQP4_uc002kvz.2_Silent_p.I201I	NM_001650	NP_001641	P55087	AQP4_HUMAN	aquaporin 4 isoform a	223	Extracellular (Potential).				cellular response to interferon-gamma|excretion|nervous system development	cytoplasm|external side of plasma membrane|integral to plasma membrane	water channel activity				0	all_cancers(21;0.0172)|Lung NSC(5;0.00299)|all_lung(6;0.00747)|Ovarian(20;0.124)					AATTTCCCATGATAACTGCAG	0.418													49	92					0	0	0.139131	0	0
DSC2	1824	broad.mit.edu	37	18	28669485	28669485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:28669485G>A	uc002kwl.3	-	5	1001	c.547C>T	c.(547-549)CGG>TGG	p.R183W	DSC2_uc002kwk.3_Missense_Mutation_p.R183W	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	183	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			AATAAATTCCGAGGTTCTTGG	0.378													19	18					0	0	0.038395	0	0
DSC1	1823	broad.mit.edu	37	18	28737418	28737418	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:28737418C>T	uc002kwn.2	-	3	529	c.267G>A	c.(265-267)AGG>AGA	p.R89R	DSC1_uc002kwm.2_Silent_p.R89R	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	89					homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			AAAAACTTTTCCTTTCAGAAG	0.428													22	31					0	0	0.069288	0	0
DSG4	147409	broad.mit.edu	37	18	28993511	28993511	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:28993511C>T	uc002kwq.2	+	16	3211	c.3076C>T	c.(3076-3078)CGA>TGA	p.R1026*	DSG4_uc002kwr.2_Nonsense_Mutation_p.R1045*	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	1026	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CATGACATCTCGACACAGAGT	0.438													29	53					0	0	0.134883	0	0
RNF125	54941	broad.mit.edu	37	18	29625679	29625679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:29625679C>T	uc002kxf.1	+	4	870	c.488C>T	c.(487-489)TCG>TTG	p.S163L		NM_017831	NP_060301	Q96EQ8	RN125_HUMAN	ring finger protein 125	163					negative regulation of type I interferon production	intracellular	ligase activity|zinc ion binding				0						CATCACAGATCGGAACGGAGG	0.338													31	60					0	0	0.069456	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093368	30093368	+	RNA	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:30093368C>G	uc010dmc.2	+	1		c.1743C>G				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						TTGGTACCTCCCCTTGGGATC	0.488													12	27					0	0	0.105934	0	0
KIAA1632	57724	broad.mit.edu	37	18	43435546	43435546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:43435546C>T	uc002lbm.2	-	43	7649	c.7549G>A	c.(7549-7551)GCT>ACT	p.A2517T		NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2517					autophagy						0						ACCTGCTGAGCTTTGGGGGTC	0.522													19	28					0	0	0.062417	0	0
TCEB3C	162699	broad.mit.edu	37	18	44554608	44554608	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:44554608T>A	uc010xdb.1	-	1	1842	c.1606A>T	c.(1606-1608)ATT>TTT	p.I536F	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	536					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TAGTCTCGAATTGCCTTGGCC	0.403													23	446					0	0	0.134883	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559378	44559378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:44559378C>T	uc002lcr.1	-	1	2611	c.2258G>A	c.(2257-2259)CGA>CAA	p.R753Q	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron|TCEB3C_uc010xdb.1_5'Flank	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	753					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTGAGTTTATCGTCGGGAGAA	0.537													45	72					0	0	0.139131	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560508	44560508	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:44560508G>A	uc002lcr.1	-	1	1481	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	376					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TGGGCTGCTCGAATTCCTCAG	0.507													28	49					0	0	0.144211	0	0
KIAA0427	9811	broad.mit.edu	37	18	46190122	46190123	+	Splice_Site	DNP	GA	AT	AT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:46190122_46190123GA>AT	uc002ldc.2	+	4	538	c.253_splice	c.e4-1	p.N85_splice	KIAA0427_uc002ldd.2_Splice_Site_p.N85_splice	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1						nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						ATCTCTTCCAGAATGGCAGCAA	0.604											OREG0024970	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	48					0	0	0.115264	0	0
CXXC1	30827	broad.mit.edu	37	18	47811394	47811394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:47811394C>T	uc002leq.3	-	7	1623	c.890G>A	c.(889-891)GGG>GAG	p.G297E	CXXC1_uc002lep.3_Missense_Mutation_p.G154E|CXXC1_uc002ler.3_Missense_Mutation_p.G297E|CXXC1_uc010doy.2_Missense_Mutation_p.G297E|CXXC1_uc002les.2_Missense_Mutation_p.G297E	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	297	Asp/Glu-rich (acidic).				histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						ATCAAAGGCCCCTGCACAGAA	0.552													27	40					0	0	0.091800	0	0
MAPK4	5596	broad.mit.edu	37	18	48190835	48190835	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:48190835C>T	uc002lev.2	+	2	1507	c.507C>T	c.(505-507)TTC>TTT	p.F169F	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Silent_p.F169F	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	169	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		TTGGGGATTTCGGGTTGGCAA	0.542													32	49					0	0	0.059317	0	0
LMAN1	3998	broad.mit.edu	37	18	56998729	56998729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:56998729G>A	uc002lhz.2	-	12	1449	c.1417C>T	c.(1417-1419)CCA>TCA	p.P473S		NM_005570	NP_005561	P49257	LMAN1_HUMAN	lectin, mannose-binding, 1 precursor	473	Lumenal (Potential).				blood coagulation|ER to Golgi vesicle-mediated transport|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			skin(1)	1		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	AAACATGATGGAAATGGTGGT	0.343													17	42					0	0	0.043863	0	0
CCBE1	147372	broad.mit.edu	37	18	57106807	57106807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:57106807G>A	uc002lib.2	-	9	989	c.919C>T	c.(919-921)CCA>TCA	p.P307S	CCBE1_uc010dpq.2_Missense_Mutation_p.P36S|CCBE1_uc002lia.2_Missense_Mutation_p.P160S	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	307	Collagen-like 2.				lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				GCCCCTGGTGGACCCTGTAAT	0.403													85	97					0	0	0.139131	0	0
TNFRSF11A	8792	broad.mit.edu	37	18	60036293	60036293	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:60036293G>A	uc002lin.2	+	9	1181	c.1143G>A	c.(1141-1143)GGG>GGA	p.G381G	TNFRSF11A_uc010dpv.2_Intron	NM_003839	NP_003830	Q9Y6Q6	TNR11_HUMAN	tumor necrosis factor receptor superfamily,	381	Cytoplasmic (Potential).				adaptive immune response|cell-cell signaling|circadian temperature homeostasis|monocyte chemotaxis|osteoclast differentiation|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|response to interleukin-1|response to lipopolysaccharide	external side of plasma membrane|integral to membrane	metal ion binding|tumor necrosis factor receptor activity			breast(2)|lung(1)	3		Colorectal(73;0.188)				TGGAGGTGGGGGAGAATGACA	0.552									Paget_Disease_of_Bone				21	22					0	0	0.076483	0	0
SERPINB11	89778	broad.mit.edu	37	18	61383299	61383299	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:61383299C>T	uc002ljk.3	+	6	450	c.388C>T	c.(388-390)CAA>TAA	p.Q130*	SERPINB11_uc010xes.1_Intron|SERPINB11_uc010dqd.2_Nonsense_Mutation_p.Q16*|SERPINB11_uc002ljj.3_Nonsense_Mutation_p.Q16*|SERPINB11_uc010dqe.2_Intron|SERPINB11_uc010dqf.2_Intron	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	130					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				GAAATGGTATCAAGCCAGGTT	0.338													9	15					0	0	0.080935	0	0
CCDC102B	79839	broad.mit.edu	37	18	66678186	66678186	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:66678186C>T	uc002lkk.2	+	9	1502	c.1279C>T	c.(1279-1281)CAA>TAA	p.Q427*	CCDC102B_uc002lki.2_Nonsense_Mutation_p.Q427*	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	427	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				ACTGAACCTTCAACATGCCTA	0.323													4	11					0	0	0.009096	0	0
NETO1	81832	broad.mit.edu	37	18	70417514	70417514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:70417514C>T	uc002lkw.2	-	9	1608	c.1324G>A	c.(1324-1326)GGC>AGC	p.G442S	NETO1_uc002lkx.1_Missense_Mutation_p.G441S|NETO1_uc002lky.1_Missense_Mutation_p.G442S	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	442	Cytoplasmic (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		CTGCGGCTGCCTTTAGTGCTG	0.468													18	25					0	0	0.043863	0	0
SALL3	27164	broad.mit.edu	37	18	76753485	76753485	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr18:76753485C>T	uc002lmt.2	+	2	1494	c.1494C>T	c.(1492-1494)CCC>CCT	p.P498P	SALL3_uc010dra.2_Silent_p.P105P	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	498					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CGGGCATCCCCTACGGCATGT	0.662													11	14					0	0	0.105934	0	0
PALM	5064	broad.mit.edu	37	19	746457	746458	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:746457_746458CC>TT	uc002lpm.1	+	9	1001_1002	c.807_808CC>TT	c.(805-810)TCCCGG>TCTTGG	p.R270W	PALM_uc002lpn.1_Missense_Mutation_p.R226W|PALM_uc010xfu.1_Missense_Mutation_p.R135W	NM_002579	NP_002570	O75781	PALM_HUMAN	paralemmin isoform 1	270					cellular component movement|negative regulation of adenylate cyclase activity|negative regulation of dopamine receptor signaling pathway|positive regulation of filopodium assembly|regulation of cell shape	cytoplasmic membrane-bounded vesicle|filopodium membrane|integral to plasma membrane					0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)|Lung(535;0.201)		CCACGCCCTCCCGGCGGGAGAT	0.733													9	8					0	0	0.115264	0	0
NDUFS7	374291	broad.mit.edu	37	19	1390911	1390911	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:1390911C>T	uc002lse.3	+	5	313	c.270C>T	c.(268-270)GCC>GCT	p.A90A	NDUFS7_uc002lsf.2_Silent_p.A154A|NDUFS7_uc002lsh.2_Silent_p.A154A|NDUFS7_uc002lsg.2_Silent_p.A97A	NM_024407	NP_077718	O75251	NDUS7_HUMAN	NADH-ubiquinone oxidoreductase Fe-S protein 7	90					mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|metal ion binding|NADH dehydrogenase (ubiquinone) activity|protein binding|quinone binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)|Breast(49;0.00186)|Lung NSC(49;0.00292)|all_lung(49;0.00419)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	NADH(DB00157)	CCTGCTGCGCCGTGGAGATGA	0.701													16	32					0	0	0.055883	0	0
GNA15	2769	broad.mit.edu	37	19	3150255	3150255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:3150255G>A	uc002lxf.2	+	3	715	c.457G>A	c.(457-459)GAA>AAA	p.E153K	GNA15_uc010xhf.1_Missense_Mutation_p.E153K	NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	153					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		GCGTCGGCGGGAATTCCACCT	0.657													45	60					0	0	0.139131	0	0
EBI3	10148	broad.mit.edu	37	19	4237053	4237053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:4237053C>T	uc002lzu.2	+	5	666	c.658C>T	c.(658-660)CCC>TCC	p.P220S		NM_005755	NP_005746	Q14213	IL27B_HUMAN	Epstein-Barr virus induced 3 precursor	220	Fibronectin type-III 2.				humoral immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of interferon-gamma biosynthetic process|T-helper 1 type immune response	extracellular space|plasma membrane	cytokine activity|cytokine receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0336)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGGAGTCTCCCCGCCACTGC	0.642													16	23					0	0	0.038395	0	0
PLIN4	729359	broad.mit.edu	37	19	4513543	4513543	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:4513543G>A	uc002mar.1	-	3	387	c.387C>T	c.(385-387)GTC>GTT	p.V129V	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	129	27 X 33 AA approximate tandem repeat.|2.					lipid particle|plasma membrane					0						TGGCCCCTGTGACCCCGCTGG	0.657													7	14					0	0	0.038147	0	0
ARRDC5	645432	broad.mit.edu	37	19	4902869	4902869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:4902869C>T	uc002mbm.2	-	1	11	c.11G>A	c.(10-12)AGA>AAA	p.R4K		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	4					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		ACATTCCTCTCTGTCCCCCAT	0.547													28	35					0	0	0.144211	0	0
SLC25A23	79085	broad.mit.edu	37	19	6454000	6454000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:6454000G>A	uc002mex.1	-	7	1037	c.895C>T	c.(895-897)CCT>TCT	p.P299S	SLC25A23_uc002mev.2_RNA|SLC25A23_uc010xjd.1_Missense_Mutation_p.P116S	NM_024103	NP_077008	Q9BV35	SCMC3_HUMAN	solute carrier family 25, member 23	299	Helical; Name=3; (Potential).|Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)|pancreas(1)	2						ACCTCCATAGGGTAAATGATG	0.602													10	25					0	0	0.093190	0	0
C3	718	broad.mit.edu	37	19	6709731	6709731	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:6709731G>A	uc002mfm.2	-	14	1871	c.1809C>T	c.(1807-1809)TTC>TTT	p.F603F		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	603			F -> V (in AHUS5).		complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TATTCAGCACGAACACGCCCT	0.617													66	110					0	0	0.139131	0	0
PNPLA6	10908	broad.mit.edu	37	19	7605065	7605065	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:7605065C>T	uc010xjq.1	+	7	807	c.612C>T	c.(610-612)TTC>TTT	p.F204F	PNPLA6_uc002mgq.1_Silent_p.F156F|PNPLA6_uc010xjp.1_Silent_p.F156F|PNPLA6_uc002mgr.1_Silent_p.F156F|PNPLA6_uc002mgs.2_Silent_p.F195F	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	195	cNMP 1.|Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						AGCCACTCTTCCTGGAGCTCT	0.682													29	37					0	0	0.064281	0	0
PNPLA6	10908	broad.mit.edu	37	19	7619498	7619498	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:7619498C>T	uc010xjq.1	+	23	2748	c.2553C>T	c.(2551-2553)ATC>ATT	p.I851I	PNPLA6_uc002mgq.1_Silent_p.I803I|PNPLA6_uc010xjp.1_Silent_p.I776I|PNPLA6_uc002mgr.1_Silent_p.I803I|PNPLA6_uc002mgs.2_Silent_p.I841I|PNPLA6_uc002mgt.1_5'Flank	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	842	Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						CACACCGTATCGTACTCTACC	0.662													23	43					0	0	0.091800	0	0
KIAA1543	57662	broad.mit.edu	37	19	7677206	7677206	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:7677206G>A	uc002mgv.3	+	11	1928	c.1827G>A	c.(1825-1827)GAG>GAA	p.E609E	KIAA1543_uc002mgu.3_Silent_p.E636E|KIAA1543_uc002mgw.2_5'Flank	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	609					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GGCTGGAGGAGAAACGCAGAG	0.687													3	16					0	0	0.009096	0	0
FBN3	84467	broad.mit.edu	37	19	8154797	8154797	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:8154797G>A	uc002mjf.2	-	49	6252	c.6231C>T	c.(6229-6231)GGC>GGT	p.G2077G	FBN3_uc002mje.2_5'UTR	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2077						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AGTCATCCGGGCCTGGGACTG	0.652													3	10					0	0	0.115264	0	0
OR7G2	390882	broad.mit.edu	37	19	9213398	9213398	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:9213398G>A	uc010xkk.1	-	1	585	c.585C>T	c.(583-585)ATC>ATT	p.I195I		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGAAGAGCGGGATTTCCAGGT	0.478													27	31					0	0	0.116897	0	0
OR7G2	390882	broad.mit.edu	37	19	9213689	9213689	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:9213689C>T	uc010xkk.1	-	1	294	c.294G>A	c.(292-294)ACG>ACA	p.T98T		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	77	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCTTTGGGATCGTGGTTGTGC	0.488													35	54					0	0	0.069456	0	0
ZNF560	147741	broad.mit.edu	37	19	9578517	9578517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:9578517G>A	uc002mlp.1	-	10	1316	c.1106C>T	c.(1105-1107)ACC>ATC	p.T369I	ZNF560_uc010dwr.1_Missense_Mutation_p.T263I	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	369	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CCCAATGTGGGTTTGCATGTG	0.388													36	54					0	0	0.092188	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10221439	10221439	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:10221439C>T	uc002mna.2	+	11	1098	c.1098C>T	c.(1096-1098)ATC>ATT	p.I366I	PPAN-P2RY11_uc010xla.1_Silent_p.I366I|P2RY11_uc002mnc.2_5'Flank|PPAN_uc002mmz.1_Silent_p.I366I|PPAN_uc002mnb.1_Silent_p.I313I	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	366					RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			CCTCTGGGATCCCTTCAAGGA	0.607													58	63					0	0	0.139131	0	0
CCDC151	115948	broad.mit.edu	37	19	11531507	11531507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:11531507G>A	uc002mrs.2	-	13	1927	c.1784C>T	c.(1783-1785)TCC>TTC	p.S595F	CCDC151_uc002mrr.2_Missense_Mutation_p.S530F|CCDC151_uc010dxz.2_Missense_Mutation_p.S535F|RGL3_uc002mrn.2_5'Flank|RGL3_uc002mrm.2_5'Flank|RGL3_uc002mro.2_5'Flank|RGL3_uc002mrp.2_5'Flank|RGL3_uc002mrq.2_5'Flank	NM_145045	NP_659482	A5D8V7	CC151_HUMAN	coiled-coil domain containing 151	595										ovary(1)	1						ACGAGTCTAGGACCTCCGAGA	0.632													22	41					0	0	0.055883	0	0
ZNF709	163051	broad.mit.edu	37	19	12575435	12575435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:12575435G>A	uc002mtv.3	-	4	1462	c.1301C>T	c.(1300-1302)TCT>TTT	p.S434F	ZNF709_uc002mtw.3_Missense_Mutation_p.S402F|ZNF709_uc002mtx.3_Missense_Mutation_p.S434F	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	434	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TATTCGAACAGAACTGGAACA	0.413													46	83					0	0	0.139131	0	0
FARSA	2193	broad.mit.edu	37	19	13041140	13041140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:13041140C>T	uc002mvs.2	-	4	448	c.400G>A	c.(400-402)GAT>AAT	p.D134N	FARSA_uc002mvt.2_RNA|FARSA_uc010xmv.1_Missense_Mutation_p.D134N|FARSA_uc010dyy.1_Missense_Mutation_p.D55N	NM_004461	NP_004452	Q9Y285	SYFA_HUMAN	phenylalanyl-tRNA synthetase, alpha subunit	134					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|phenylalanine-tRNA ligase activity|protein binding|tRNA binding			ovary(1)	1					L-Phenylalanine(DB00120)	TGCACCTCATCCTCCATGCTG	0.662													25	42					0	0	0.099896	0	0
CACNA1A	773	broad.mit.edu	37	19	13397781	13397781	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:13397781C>T	uc010dze.2	-	20	3329	c.3093_splice	c.e20-1	p.K1031_splice	CACNA1A_uc010dzc.2_Splice_Site_p.K556_splice|CACNA1A_uc002mwy.3_Splice_Site_p.K1030_splice|CACNA1A_uc010xne.1_Splice_Site_p.K559_splice	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3						cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CTGGTTCTCTCTGAGGAAGGC	0.532													14	12					0	0	0.119110	0	0
C19orf57	79173	broad.mit.edu	37	19	14000670	14000670	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:14000670G>A	uc002mxl.1	-	6	1058	c.999C>T	c.(997-999)TCC>TCT	p.S333S	C19orf57_uc002mxk.1_Silent_p.S215S|C19orf57_uc002mxm.1_Intron	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	333					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			CCATCCCGAGGGAGGAGCATC	0.652													14	11					0	0	0.119110	0	0
EMR3	84658	broad.mit.edu	37	19	14740884	14740884	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:14740884G>A	uc002mzi.3	-	14	1927	c.1779C>T	c.(1777-1779)TTC>TTT	p.F593F	EMR3_uc010dzp.2_Silent_p.F541F|EMR3_uc010xnv.1_Silent_p.F467F	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	593	Helical; Name=7; (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						CCAAGAAGATGAAGAAGCCTT	0.493													20	24					0	0	0.055883	0	0
BRD4	23476	broad.mit.edu	37	19	15366210	15366211	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:15366210_15366211GG>AA	uc002nar.2	-	10	2166_2167	c.1944_1945CC>TT	c.(1942-1947)AACCCC>AATTCC	p.P649S	BRD4_uc002nas.2_Missense_Mutation_p.P649S|BRD4_uc002nat.3_Missense_Mutation_p.P649S	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	649					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			ATCTCGTCGGGGTTGGAATTCT	0.574			T	NUT|C15orf55	lethal midline carcinoma of young people								18	32					0	0	0.115264	0	0
WIZ	58525	broad.mit.edu	37	19	15547870	15547870	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:15547870C>T	uc002nbb.3	-	3	490	c.276G>A	c.(274-276)CGG>CGA	p.R92R		NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	882	C2H2-type 7.					nucleus	zinc ion binding				0						AGAGGCCGGCCCGTGTGTCGA	0.627													14	12					0	0	0.132662	0	0
CYP4F8	11283	broad.mit.edu	37	19	15730326	15730326	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:15730326C>T	uc002nbi.2	+	4	433	c.369C>T	c.(367-369)GTC>GTT	p.V123V	CYP4F8_uc010xoi.1_3'UTR|CYP4F8_uc010xoj.1_Intron	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	123					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						AGGACATAGTCTTCTACAAGA	0.542													26	14					0	0	0.059317	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739113	15739113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:15739113G>A	uc002nbi.2	+	12	1181	c.1117G>A	c.(1117-1119)GAC>AAC	p.D373N	CYP4F8_uc010xoj.1_Missense_Mutation_p.D185N	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	373					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						TTTCCTTAGGGACGACCTGGC	0.602													41	65					0	0	0.098360	0	0
SIN3B	23309	broad.mit.edu	37	19	16974604	16974604	+	Silent	SNP	C	T	T	rs140663662		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:16974604C>T	uc002ney.1	+	11	1490	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F	SIN3B_uc002nez.1_Silent_p.F460F|SIN3B_uc010xpi.1_Silent_p.F50F	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	492	Interaction with SDS3 and HDAC1 (By similarity).|Interaction with NCOR1 (By similarity).				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						ACGAGCGCTTCGAGGTGTGTG	0.617													13	28					0	0	0.093190	0	0
USHBP1	83878	broad.mit.edu	37	19	17367358	17367358	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:17367358G>A	uc002nfs.1	-	9	1505	c.1392C>T	c.(1390-1392)GCC>GCT	p.A464A	USHBP1_uc002nfr.1_Silent_p.A90A|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Silent_p.A400A	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	464							PDZ domain binding			ovary(1)	1						TCCCCAGAATGGCCTGCACCA	0.612													50	74					0	0	0.139131	0	0
USHBP1	83878	broad.mit.edu	37	19	17373661	17373662	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:17373661_17373662CC>TT	uc002nfs.1	-	4	454_455	c.341_342GG>AA	c.(340-342)GGG>GAA	p.G114E	USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.G50E|USHBP1_uc010eam.1_Missense_Mutation_p.G42E	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	114							PDZ domain binding			ovary(1)	1						CATCGGGGGCCCCATTCCCAGG	0.663													40	58					0	0	0.115264	0	0
MAST3	23031	broad.mit.edu	37	19	18248077	18248077	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:18248077C>T	uc002nhz.3	+	18	1914	c.1914C>T	c.(1912-1914)CCC>CCT	p.P638P		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	638	Protein kinase.						ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						AGCAGCACCCCTTTTTCCTGG	0.617													25	41					0	0	0.083992	0	0
LRRC25	126364	broad.mit.edu	37	19	18507677	18507678	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:18507677_18507678CC>TT	uc002niw.2	-	1	738_739	c.96_97GG>AA	c.(94-99)GTGGAC>GTAAAC	p.D33N	LRRC25_uc002nix.2_Missense_Mutation_p.D33N	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	33	Extracellular (Potential).					integral to membrane					0						GCGTTCCAGTCCACATCCGCGG	0.624													10	23					0	0	0.115264	0	0
UPF1	5976	broad.mit.edu	37	19	18971159	18971159	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:18971159C>T	uc002nkg.2	+	16	2520	c.2245C>T	c.(2245-2247)CAG>TAG	p.Q749*	UPF1_uc002nkf.2_Nonsense_Mutation_p.Q738*|UPF1_uc002nkh.2_5'UTR	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	749					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						ATTTGACTTCCAGTGGCCCCA	0.552													63	86					0	0	0.139131	0	0
ZNF100	163227	broad.mit.edu	37	19	21909539	21909539	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:21909539G>A	uc002nqi.2	-	5	1774	c.1575C>T	c.(1573-1575)TCC>TCT	p.S525S	ZNF100_uc002nqh.2_Silent_p.S461S	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	525					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAAGGCTTAGGGACTGGTTAA	0.358													26	53					0	0	0.116897	0	0
ZNF208	7757	broad.mit.edu	37	19	22154481	22154481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:22154481C>T	uc002nqp.2	-	6	3120	c.2971G>A	c.(2971-2973)GGC>AGC	p.G991S	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AAGCTTTTGCCACATTCTTCA	0.378													26	41					0	0	0.091800	0	0
ZNF99	7652	broad.mit.edu	37	19	22941052	22941052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:22941052C>T	uc010xrh.1	-	5	1386	c.1386G>A	c.(1384-1386)ATG>ATA	p.M462I		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTTATGTTTCATAAGGGTTG	0.333													26	33					0	0	0.125774	0	0
ZNF91	7644	broad.mit.edu	37	19	23544818	23544818	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:23544818G>A	uc002nre.2	-	4	1076	c.963C>T	c.(961-963)CCC>CCT	p.P321P	ZNF91_uc010xrj.1_Silent_p.P289P	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	321						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CACATTTGTAGGGTTTCTCTC	0.383													36	39					0	0	0.080422	0	0
ZNF507	22847	broad.mit.edu	37	19	32843872	32843872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:32843872C>T	uc002nte.2	+	3	408	c.136C>T	c.(136-138)CAT>TAT	p.H46Y	ZNF507_uc002ntc.2_Missense_Mutation_p.H46Y|ZNF507_uc010xrn.1_Missense_Mutation_p.H46Y|ZNF507_uc002ntd.2_Missense_Mutation_p.H46Y	NM_001136156	NP_001129628	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	46					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|kidney(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(110;0.162)					TCCATTAATCCATGTTATCCA	0.373													15	20					0	0	0.132662	0	0
GPATCH1	55094	broad.mit.edu	37	19	33579090	33579090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:33579090G>A	uc002nug.1	+	2	438	c.124G>A	c.(124-126)GAA>AAA	p.E42K		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	42						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					TGTCAGAGATGAAAAAGGAAG	0.358													17	40					0	0	0.146539	0	0
GRAMD1A	57655	broad.mit.edu	37	19	35512717	35512718	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:35512717_35512718CC>TT	uc010xse.1	+	15	1839_1840	c.1702_1703CC>TT	c.(1702-1704)CCC>TTC	p.P568F	GRAMD1A_uc002nxk.2_Missense_Mutation_p.P561F|GRAMD1A_uc002nxl.2_Missense_Mutation_p.P334F|GRAMD1A_uc010xsf.1_Missense_Mutation_p.P573F|GRAMD1A_uc002nxm.1_RNA|GRAMD1A_uc002nxn.1_Missense_Mutation_p.P183F	NM_020895	NP_065946	Q96CP6	GRM1A_HUMAN	GRAM domain containing 1A isoform 1	568						integral to membrane					0	all_lung(56;2.66e-08)|Lung NSC(56;4.13e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			CGGGGACGGGCCCCAGCACCCA	0.718													10	22					0	0	0.115264	0	0
FFAR1	2864	broad.mit.edu	37	19	35843008	35843008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:35843008G>A	uc002nzc.2	+	1	564	c.554G>A	c.(553-555)AGC>AAC	p.S185N		NM_005303	NP_005294	O14842	FFAR1_HUMAN	free fatty acid receptor 1	185	Helical; Name=5; (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;4.58e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.67e-19)|all cancers(14;2.01e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)		Icosapent(DB00159)	GCCCGCTTCAGCCTCTCTCTC	0.682													13	16					0	0	0.119110	0	0
FFAR3	2865	broad.mit.edu	37	19	35850639	35850639	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:35850639T>C	uc002nzd.2	+	2	922	c.847T>C	c.(847-849)TTC>CTC	p.F283L	FFAR3_uc010xsu.1_Intron	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	283	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			CTCCTCCGGGTTCCAAGCCGA	0.592													13	64					0	0	0.049695	0	0
MLL4	9757	broad.mit.edu	37	19	36219791	36219791	+	Splice_Site	SNP	G	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:36219791G>T	uc010eei.2	+	21	4687	c.4687_splice	c.e21+1	p.A1563_splice		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4						chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCCTCAGCAGGTACTGGGAAG	0.602													16	21					4.7546e-09	5.02236e-09	0.146539	1	0
ARHGAP33	115703	broad.mit.edu	37	19	36278390	36278390	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:36278390A>G	uc002obs.1	+	21	2525	c.2440A>G	c.(2440-2442)AGT>GGT	p.S814G	ARHGAP33_uc002obt.1_Missense_Mutation_p.S839G|ARHGAP33_uc010eel.2_Missense_Mutation_p.S563G|ARHGAP33_uc002obv.1_Missense_Mutation_p.S563G	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						AAGGCAACAAAGTGATGGGAG	0.692													8	11					0	0	0.038147	0	0
CLIP3	25999	broad.mit.edu	37	19	36517887	36517888	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:36517887_36517888GG>AA	uc010eeq.1	-	3	648_649	c.366_367CC>TT	c.(364-369)CTCCAC>CTTTAC	p.H123Y	uc002ocy.2_Intron|CLIP3_uc002ocz.1_Missense_Mutation_p.H123Y	NM_015526	NP_056341	Q96DZ5	CLIP3_HUMAN	CAP-GLY domain containing linker protein 3	123	ANK 1.				chaperone-mediated protein transport|fat cell differentiation|membrane biogenesis|negative regulation of microtubule polymerization|peptidyl-L-cysteine S-palmitoylation|positive regulation of apoptosis|positive regulation of endocytosis|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose transport|positive regulation of protein phosphorylation	early endosome membrane|Golgi stack|membrane raft|microsome|plasma membrane|recycling endosome membrane|trans-Golgi network membrane	ganglioside binding|microtubule binding			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CACGCATAGTGGAGCAGTGTCA	0.614													20	23					0	0	0.115264	0	0
ZNF585A	199704	broad.mit.edu	37	19	37642536	37642536	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:37642536G>A	uc002ofo.1	-	5	2496	c.2265C>T	c.(2263-2265)TTC>TTT	p.F755F	ZNF585A_uc002ofm.1_Silent_p.F700F|ZNF585A_uc002ofn.1_Silent_p.F700F	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	755	C2H2-type 22.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATTTCTGAACGAAGCCTTTCC	0.488													34	56					0	0	0.117977	0	0
RYR1	6261	broad.mit.edu	37	19	38954093	38954093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:38954093C>T	uc002oit.2	+	21	2738	c.2608C>T	c.(2608-2610)CGG>TGG	p.R870W	RYR1_uc002oiu.2_Missense_Mutation_p.R870W	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	870	1.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGAGCGCATTCGGGAGAAGCT	0.642													14	29					0	0	0.033300	0	0
IL28B	282617	broad.mit.edu	37	19	39734691	39734691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:39734691G>A	uc010xut.1	-	3	369	c.365C>T	c.(364-366)CCC>CTC	p.P122L	IL28B_uc010xuu.1_Missense_Mutation_p.P122L	NM_172139	NP_742151	Q8IZI9	IL28B_HUMAN	interleukin 28B	122					response to virus	extracellular space	cytokine activity				0	all_cancers(60;2.81e-07)|all_lung(34;7.81e-08)|Lung NSC(34;9.29e-08)|all_epithelial(25;3.9e-07)|Ovarian(47;0.0315)		Epithelial(26;1.55e-27)|all cancers(26;1.41e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GGTGTGAAGGGGCTGGTCCAA	0.667													36	42					0	0	0.074837	0	0
GMFG	9535	broad.mit.edu	37	19	39820263	39820263	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:39820263G>A	uc002okz.3	-	5	314	c.204C>T	c.(202-204)TTC>TTT	p.F68F	GMFG_uc002okx.3_Silent_p.F68F	NM_004877	NP_004868	O60234	GMFG_HUMAN	glia maturation factor, gamma	68	ADF-H.				protein phosphorylation	intracellular	actin binding|enzyme activator activity|growth factor activity|protein kinase inhibitor activity			skin(1)	1	all_cancers(60;2.5e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.15e-27)|all cancers(26;1.3e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			TGTAAACCACGAACCTACCGT	0.512													13	21					0	0	0.105934	0	0
MIA	8190	broad.mit.edu	37	19	41281685	41281685	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:41281685G>A	uc002opb.3	+	2	304	c.156G>A	c.(154-156)CAG>CAA	p.Q52Q	MIA_uc010xvt.1_RNA|RAB4B_uc002opc.1_RNA|RAB4B_uc002opd.1_5'Flank|RAB4B_uc002ope.1_5'Flank|EGLN2_uc010ehd.2_5'Flank	NM_006533	NP_006524	Q16674	MIA_HUMAN	melanoma inhibitory activity precursor	52	SH3.				cell proliferation	extracellular space	growth factor activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)	GBM - Glioblastoma multiforme(1328;0.0199)		TGGCCCTTCAGGACTACATGG	0.602													16	34					0	0	0.146539	0	0
LYPD4	147719	broad.mit.edu	37	19	42341400	42341400	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:42341400G>A	uc002orp.1	-	5	1542	c.558C>T	c.(556-558)TTC>TTT	p.F186F	LYPD4_uc002orq.1_Silent_p.F151F	NM_173506	NP_775777	Q6UWN0	LYPD4_HUMAN	LY6/PLAUR domain containing 4 precursor	186	UPAR/Ly6.					anchored to membrane|plasma membrane				ovary(1)	1						CCATGAGGAGGAAGGTGGTAT	0.408													42	75					0	0	0.131918	0	0
MEGF8	1954	broad.mit.edu	37	19	42867222	42867222	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:42867222C>T	uc002otl.3	+	34	6515	c.5880C>T	c.(5878-5880)TCC>TCT	p.S1960S	MEGF8_uc002otm.3_Silent_p.S1568S	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2027	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				GCATCCTCTCCGTGCAGCCCA	0.478													6	14					0	0	0.069234	0	0
CEACAM20	125931	broad.mit.edu	37	19	45026687	45026687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:45026687C>T	uc010ejn.1	-	4	743	c.727G>A	c.(727-729)GGT>AGT	p.G243S	CEACAM20_uc010ejo.1_Missense_Mutation_p.G243S|CEACAM20_uc010ejp.1_Missense_Mutation_p.G243S|CEACAM20_uc010ejq.1_Missense_Mutation_p.G243S	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	243	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TTCAGAGTACCCAGGCTGGAC	0.527													109	195					0	0	0.139131	0	0
CLPTM1	1209	broad.mit.edu	37	19	45490616	45490616	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:45490616T>A	uc002pai.2	+	8	988	c.973T>A	c.(973-975)TCG>ACG	p.S325T	CLPTM1_uc010ejv.1_Missense_Mutation_p.S223T|CLPTM1_uc010xxf.1_Missense_Mutation_p.S223T|CLPTM1_uc010xxg.1_Missense_Mutation_p.S311T	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	325	Extracellular (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		GAGCACCAAGTCGCCCTGGAA	0.637													72	121					0	0	0.139131	0	0
IRF2BP1	26145	broad.mit.edu	37	19	46387795	46387795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:46387795G>A	uc002pds.1	-	1	1582	c.1238C>T	c.(1237-1239)TCC>TTC	p.S413F		NM_015649	NP_056464	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein	413					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		GGTCTCAGCGGAGTACGGGCC	0.716													15	22					0	0	0.049695	0	0
HIF3A	64344	broad.mit.edu	37	19	46832655	46832655	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:46832655G>A	uc002peh.2	+	12	1661	c.1632G>A	c.(1630-1632)GGG>GGA	p.G544G	HIF3A_uc002peg.3_Silent_p.G544G|HIF3A_uc002pei.3_Silent_p.G488G|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Silent_p.G488G|HIF3A_uc010xxy.1_Silent_p.G475G|HIF3A_uc002pel.2_Silent_p.G542G|HIF3A_uc010xxz.1_Silent_p.G493G	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	544	ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CCCGCTGGGGGAGTGACCCCC	0.687													9	10					0	0	0.069234	0	0
PRKD2	25865	broad.mit.edu	37	19	47219569	47219569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:47219569G>A	uc002pfh.2	-	2	401	c.59C>T	c.(58-60)CCT>CTT	p.P20L	PRKD2_uc002pfg.2_5'Flank|PRKD2_uc002pfi.2_Missense_Mutation_p.P20L|PRKD2_uc002pfj.2_Missense_Mutation_p.P20L|PRKD2_uc010xye.1_Missense_Mutation_p.P20L|PRKD2_uc002pfk.2_Intron	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	20					cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		GGGGGGCGGAGGAGACCCCGG	0.756													10	16					0	0	0.069234	0	0
DHX34	9704	broad.mit.edu	37	19	47856689	47856689	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:47856689C>T	uc010xyn.1	+	2	743	c.402C>T	c.(400-402)CGC>CGT	p.R134R	DHX34_uc010elc.1_Silent_p.R134R	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	134						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		CTGAGTTCCGCCGAGCCCTGT	0.647													34	38					0	0	0.059317	0	0
DHX34	9704	broad.mit.edu	37	19	47858389	47858389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:47858389G>A	uc010xyn.1	+	3	1140	c.799G>A	c.(799-801)GAA>AAA	p.E267K	DHX34_uc010elc.1_Missense_Mutation_p.E267K	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	267	Helicase ATP-binding.					intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		AATCCAGCGGGAACCCAGCCT	0.597													31	43					0	0	0.045705	0	0
PLA2G4C	8605	broad.mit.edu	37	19	48565342	48565342	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:48565342G>A	uc002phx.2	-	14	1568	c.1170C>T	c.(1168-1170)ATC>ATT	p.I390I	PLA2G4C_uc002phw.2_Silent_p.I325I|PLA2G4C_uc010elr.2_Silent_p.I390I|PLA2G4C_uc010xzd.1_Silent_p.I400I	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	390	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		AGGGAGTGTTGATGGCTAAAC	0.582													26	40					0	0	0.116897	0	0
SLC6A16	28968	broad.mit.edu	37	19	49793439	49793439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:49793439C>T	uc002pmz.2	-	12	2386	c.2152G>A	c.(2152-2154)GAA>AAA	p.E718K	SLC6A16_uc002pna.2_3'UTR	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	718	Cytoplasmic (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		AGAATTTCTTCCTTTTGAACC	0.438													62	60					0	0	0.139131	0	0
SLC17A7	57030	broad.mit.edu	37	19	49944628	49944628	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:49944628G>A	uc002pnp.2	-	1	181	c.9C>T	c.(7-9)TTC>TTT	p.F3F		NM_020309	NP_064705	Q9P2U7	VGLU1_HUMAN	solute carrier family 17, member 7	3	Cytoplasmic (Potential).				glutamate secretion|neurotransmitter secretion	cell junction|clathrin sculpted glutamate transport vesicle membrane|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|sodium-dependent phosphate transmembrane transporter activity|sodium:inorganic phosphate symporter activity			ovary(1)|pancreas(1)|skin(1)	3		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(486;0.0245)		CCTCCTGGCGGAACTCCATGG	0.448													13	6					0	0	0.132662	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169131	50169131	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:50169131C>T	uc002ppa.2	+	1	733	c.51C>T	c.(49-51)TTC>TTT	p.F17F	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.F17F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	17					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		TTTTGGGTTTCCGGCCAGAGG	0.572													31	43					0	0	0.054565	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50455624	50455624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:50455624C>T	uc010ybh.1	-	9	1770	c.1679G>A	c.(1678-1680)GGC>GAC	p.G560D	SIGLEC11_uc010ybi.1_Missense_Mutation_p.G464D	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	560	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		AGCCCCCAGGCCAAGTCCTCC	0.657													27	38					0	0	0.125774	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50463633	50463633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:50463633G>A	uc010ybh.1	-	3	597	c.506C>T	c.(505-507)CCC>CTC	p.P169L	SIGLEC11_uc010ybi.1_Missense_Mutation_p.P169L	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	169	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		CGGCTGCCCGGGCTCCAGGGT	0.597													20	18					0	0	0.045705	0	0
KLK3	354	broad.mit.edu	37	19	51361525	51361525	+	Silent	SNP	G	A	A	rs147547638	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:51361525G>A	uc002pts.1	+	3	488	c.447G>A	c.(445-447)GGG>GGA	p.G149G	KLK3_uc010ycj.1_Intron|KLK3_uc002ptr.1_Silent_p.G106G|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	149	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		CAGCACTGGGGACCACCTGCT	0.483													24	27					0	0	0.076483	0	0
C19orf75	284369	broad.mit.edu	37	19	51768691	51768691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:51768691G>A	uc002pwb.1	+	3	473	c.92G>A	c.(91-93)GGG>GAG	p.G31E	C19orf75_uc010eov.1_Intron|C19orf75_uc010ycw.1_Intron	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	31						integral to membrane				ovary(1)|pancreas(1)	2						TCCTTCCATGGGATTCCCACA	0.587													28	41					0	0	0.125774	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51917062	51917062	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:51917062C>T	uc002pwo.2	-	10	2341	c.1725G>A	c.(1723-1725)CCG>CCA	p.P575P	SIGLEC10_uc002pwp.2_Silent_p.P517P|SIGLEC10_uc002pwq.2_Silent_p.P422P|SIGLEC10_uc002pwr.2_Silent_p.P480P|SIGLEC10_uc010ycy.1_Silent_p.P390P|SIGLEC10_uc010ycz.1_Silent_p.P432P|SIGLEC10_uc010eow.2_Silent_p.P292P|SIGLEC10_uc002pws.1_Silent_p.P316P	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	575	Cytoplasmic (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		TCCGTCTCTTCGGTAGAATCT	0.463													29	49					0	0	0.125774	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51920159	51920159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:51920159G>A	uc002pwo.2	-	3	1083	c.467C>T	c.(466-468)CCC>CTC	p.P156L	SIGLEC10_uc002pwp.2_Intron|SIGLEC10_uc002pwq.2_Intron|SIGLEC10_uc002pwr.2_Missense_Mutation_p.P156L|SIGLEC10_uc010ycy.1_Missense_Mutation_p.P156L|SIGLEC10_uc010ycz.1_Intron|SIGLEC10_uc010eow.2_5'UTR|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	156	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		CGGCTGCCCGGGCTCCAGGGT	0.617													8	137					0	0	0.047766	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52002861	52002861	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:52002861C>T	uc002pwx.1	-	3	974	c.918G>A	c.(916-918)ACG>ACA	p.T306T	SIGLEC12_uc002pww.1_Silent_p.T188T|SIGLEC12_uc010eoy.1_Silent_p.T33T	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	306	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TCCAGGTGATCGTGGGGGGCG	0.667													26	29					0	0	0.108266	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52003339	52003339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:52003339C>T	uc002pwx.1	-	2	699	c.643G>A	c.(643-645)GAT>AAT	p.D215N	SIGLEC12_uc002pww.1_Missense_Mutation_p.D97N|SIGLEC12_uc010eoy.1_Intron	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	215	Ig-like V-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCGTGGGTATCCTCTTGCACT	0.532													42	64					0	0	0.104719	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52004896	52004896	+	Missense_Mutation	SNP	G	A	A	rs150618212		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:52004896G>A	uc002pwx.1	-	1	148	c.92C>T	c.(91-93)TCC>TTC	p.S31F	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	31	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CACCGTCACGGACTTCTGCAT	0.468													11	31					0	0	0.069234	0	0
ZNF615	284370	broad.mit.edu	37	19	52496182	52496182	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:52496182G>T	uc002pye.1	-	6	2439	c.2147C>A	c.(2146-2148)GCT>GAT	p.A716D	ZNF615_uc002pyf.1_Missense_Mutation_p.A727D|ZNF615_uc002pyg.1_Missense_Mutation_p.A608D|ZNF615_uc002pyh.1_Missense_Mutation_p.A727D|ZNF615_uc010epi.1_Missense_Mutation_p.A723D|ZNF615_uc010ydg.1_Missense_Mutation_p.A721D	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	716	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.A727G(1)|p.A716G(1)		ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		GTGCGCAAAAGCTTTCCCACA	0.438													87	102					2.13431e-38	2.27279e-38	0.139131	1	0
ZNF578	147660	broad.mit.edu	37	19	53013881	53013881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:53013881G>A	uc002pzp.3	+	6	491	c.247G>A	c.(247-249)GAA>AAA	p.E83K		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:Variant_position_missing_in_Q96N58_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		AGGCAATACAGAAGTGATCCA	0.378													64	95					0	0	0.139131	0	0
ZNF160	90338	broad.mit.edu	37	19	53571903	53571903	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:53571903C>T	uc010eqk.2	-	7	2300	c.1884G>A	c.(1882-1884)AAG>AAA	p.K628K	ZNF160_uc002qaq.3_Silent_p.K628K|ZNF160_uc002qar.3_Silent_p.K628K	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	628	C2H2-type 14.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		GCCTAAAAACCTTGCCGCATT	0.413													38	46					0	0	0.069456	0	0
ZNF160	90338	broad.mit.edu	37	19	53572715	53572715	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:53572715T>C	uc010eqk.2	-	7	1488	c.1072A>G	c.(1072-1074)ACC>GCC	p.T358A	ZNF160_uc002qaq.3_Missense_Mutation_p.T358A|ZNF160_uc002qar.3_Missense_Mutation_p.T358A	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	358	C2H2-type 4.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		AACTGATGGGTAGTTAGGTTT	0.378													36	57					0	0	0.074837	0	0
PRPF31	26121	broad.mit.edu	37	19	54634798	54634798	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:54634798T>C	uc002qdh.2	+	14	1831	c.1435T>C	c.(1435-1437)TAT>CAT	p.Y479H	PRPF31_uc010yek.1_3'UTR	NM_015629	NP_056444	Q8WWY3	PRP31_HUMAN	pre-mRNA processing factor 31 homolog	479					assembly of spliceosomal tri-snRNP	Cajal body|MLL1 complex|nuclear speck|U4 snRNP|U4/U6 x U5 tri-snRNP complex|U4atac snRNP	RNA binding|snRNP binding			ovary(1)	1	all_cancers(19;0.00681)|all_epithelial(19;0.00362)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CAACCAGAAGTATTTCTCCAG	0.562													20	30					0	0	0.049695	0	0
LILRB1	10859	broad.mit.edu	37	19	55143953	55143953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:55143953C>T	uc002qgj.2	+	7	1040	c.700C>T	c.(700-702)CCT>TCT	p.P234S	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.P234S|LILRB1_uc002qgk.2_Missense_Mutation_p.P234S|LILRB1_uc002qgm.2_Missense_Mutation_p.P234S|LILRB1_uc010erq.2_Missense_Mutation_p.P234S|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	234	Ig-like C2-type 3.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GCAGCCAGGTCCTATCGTGGC	0.537										HNSCC(37;0.09)			30	52					0	0	0.045705	0	0
LILRB4	11006	broad.mit.edu	37	19	55178170	55178170	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:55178170G>A	uc002qgp.2	+	10	1373	c.1011G>A	c.(1009-1011)CAG>CAA	p.Q337Q	LILRB4_uc002qgq.2_Silent_p.Q337Q|LILRB4_uc002qgr.2_Silent_p.Q379Q|LILRB4_uc010ert.2_Silent_p.Q379Q|LILRB4_uc010eru.2_Silent_p.Q367Q	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	337	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		AGAACACACAGCCTGAGGACG	0.403													32	49					0	0	0.050027	0	0
LILRP2	79166	broad.mit.edu	37	19	55221349	55221349	+	RNA	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:55221349G>A	uc002qgs.1	+	1		c.1749G>A			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GCGTGTCTAGGAAGCCCTCCC	0.612													13	19					0	0	0.105934	0	0
NLRP2	55655	broad.mit.edu	37	19	55496441	55496441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:55496441C>T	uc002qij.2	+	7	2143	c.2057C>T	c.(2056-2058)CCT>CTT	p.P686L	NLRP2_uc010yfp.1_Missense_Mutation_p.P663L|NLRP2_uc010esn.2_Missense_Mutation_p.P662L|NLRP2_uc010eso.2_Missense_Mutation_p.P683L|NLRP2_uc010esp.2_Missense_Mutation_p.P664L	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	686					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CACATGCTTCCTTTCTGGACG	0.453													41	67					0	0	0.139131	0	0
NLRP8	126205	broad.mit.edu	37	19	56487619	56487619	+	Silent	SNP	C	T	T	rs61734100	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:56487619C>T	uc002qmh.2	+	8	2897	c.2826C>T	c.(2824-2826)ATC>ATT	p.I942I	NLRP8_uc010etg.2_Silent_p.I923I	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	942	LRR 5.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		ATGGGGTGATCCTGCTGTGTG	0.453													36	50					0	0	0.086207	0	0
ZNF71	58491	broad.mit.edu	37	19	57134054	57134054	+	Nonsense_Mutation	SNP	C	T	T	rs145277321	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:57134054C>T	uc002qnm.3	+	3	1637	c.1399C>T	c.(1399-1401)CGA>TGA	p.R467*		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	467	C2H2-type 13.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		GAAGCCCTACCGATGCGGCGA	0.647													15	41					0	0	0.146539	0	0
USP29	57663	broad.mit.edu	37	19	57640800	57640800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:57640800G>A	uc002qny.2	+	4	1113	c.757G>A	c.(757-759)GGT>AGT	p.G253S		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	253					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGCCAAAAATGGTTTGACATC	0.473													15	28					0	0	0.033300	0	0
VN1R1	57191	broad.mit.edu	37	19	57967429	57967429	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:57967429G>A	uc002qos.1	-	1	426	c.426C>T	c.(424-426)CTC>CTT	p.L142L	ZNF547_uc002qpm.3_Intron	NM_020633	NP_065684	Q9GZP7	VN1R1_HUMAN	vomeronasal 1 receptor 1	142	Helical; Name=3; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)|Breast(46;0.222)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)|Lung(386;0.171)		GGAATCCATTGAGAAGGCAGA	0.428													32	47					0	0	0.054565	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58190091	58190091	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:58190091A>C	uc002qpu.2	+	5	1817	c.1120A>C	c.(1120-1122)AAA>CAA	p.K374Q		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	374	C2H2-type 3.				telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CAGCATGTGTAAAAAGTCCTT	0.453													49	82					0	0	0.139131	0	0
ZNF132	7691	broad.mit.edu	37	19	58946315	58946315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:58946315C>T	uc002qst.3	-	3	897	c.496G>A	c.(496-498)GGA>AGA	p.G166R		NM_003433	NP_003424	P52740	ZN132_HUMAN	zinc finger protein 132	166						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0171)|Lung(386;0.182)		GGCTTCCCTCCACTGTGCTCC	0.512													42	64					0	0	0.131918	0	0
SNTG2	54221	broad.mit.edu	37	2	1271289	1271289	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:1271289C>T	uc002qwq.2	+	14	1358	c.1230C>T	c.(1228-1230)GCC>GCT	p.A410A	SNTG2_uc010ewi.2_Silent_p.A283A	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	410	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		GCGAGCTGGCCATGTGGGAGA	0.532													11	29					0	0	0.105934	0	0
ATP6V1C2	245973	broad.mit.edu	37	2	10866671	10866672	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:10866671_10866672GG>AT	uc002ras.2	+	3	282_283	c.173_174GG>AT	c.(172-174)GGG>GAT	p.G58D	ATP6V1C2_uc002rat.2_Missense_Mutation_p.G58D	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	58					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		GATGAGTTGGGGAAACTCGACA	0.45													16	29					0	0	0.115264	0	0
NBAS	51594	broad.mit.edu	37	2	15307200	15307200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:15307200G>A	uc002rcc.1	-	52	7114	c.7088C>T	c.(7087-7089)GCC>GTC	p.A2363V	NBAS_uc002rcb.1_Missense_Mutation_p.A203V|NBAS_uc010exl.1_Missense_Mutation_p.A1435V|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2363										ovary(2)|liver(1)|skin(1)	4						TGCGCGGAGGGCTGTACTGAA	0.612													30	40					0	0	0.045705	0	0
NBAS	51594	broad.mit.edu	37	2	15432747	15432747	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:15432747G>A	uc002rcc.1	-	41	4967	c.4941C>T	c.(4939-4941)ATC>ATT	p.I1647I	NBAS_uc010exl.1_Silent_p.I719I|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	1647										ovary(2)|liver(1)|skin(1)	4						GGCCCTGAAGGATCTGCGCCT	0.507													25	32					0	0	0.083992	0	0
MSGN1	343930	broad.mit.edu	37	2	17997862	17997862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:17997862C>T	uc010yjt.1	+	1	77	c.77C>T	c.(76-78)TCC>TTC	p.S26F		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	26					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTGCTGTCTTCCTGGGACTGG	0.602													17	38					0	0	0.033300	0	0
APOB	338	broad.mit.edu	37	2	21227313	21227313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:21227313C>T	uc002red.2	-	28	12043	c.11915G>A	c.(11914-11916)GGA>GAA	p.G3972E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3972					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTGCGCTTTTCCTTCCCATTC	0.463													193	305					0	0	0.139131	0	0
ITSN2	50618	broad.mit.edu	37	2	24521542	24521542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:24521542C>T	uc002rfe.2	-	13	1744	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	ITSN2_uc002rff.2_Missense_Mutation_p.E496K|ITSN2_uc002rfg.2_Missense_Mutation_p.E496K|ITSN2_uc010eyd.2_Missense_Mutation_p.E521K	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	496	Potential.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACCAGTGCTTCCAACTCAAGA	0.323													31	42					0	0	0.054565	0	0
NCOA1	8648	broad.mit.edu	37	2	24920556	24920556	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:24920556C>T	uc002rfk.2	+	9	1096	c.838C>T	c.(838-840)CTG>TTG	p.L280L	NCOA1_uc010eye.2_Silent_p.L280L|NCOA1_uc002rfi.2_Silent_p.L129L|NCOA1_uc002rfj.2_Silent_p.L280L|NCOA1_uc002rfl.2_Silent_p.L280L	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	280									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TACTAGTTCCCTGAGAGCTGC	0.368			T	PAX3	alveolar rhadomyosarcoma								17	17					0	0	0.038395	0	0
C2orf39	92749	broad.mit.edu	37	2	26667734	26667734	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:26667734G>A	uc002rhg.2	+	10	1388	c.1314G>A	c.(1312-1314)TGG>TGA	p.W438*	C2orf39_uc010eym.1_RNA	NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	438											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ctgatttctggttcctgaaca	0.279													19	26					0	0	0.049695	0	0
TMEM214	54867	broad.mit.edu	37	2	27263281	27263281	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:27263281C>T	uc002ria.3	+	16	1970	c.1860C>T	c.(1858-1860)TTC>TTT	p.F620F	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Silent_p.F575F	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	620	Helical; (Potential).					integral to membrane	protein binding				0						CCCTGCTTTTCCACCAGAATG	0.587													50	54					0	0	0.139131	0	0
TRIM54	57159	broad.mit.edu	37	2	27521478	27521478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:27521478C>T	uc002rjo.2	+	2	212	c.212C>T	c.(211-213)TCT>TTT	p.S71F	TRIM54_uc002rjn.2_Missense_Mutation_p.S71F	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	71	RING-type.				cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACCACTGTGTCTTCAGGAGGC	0.602													15	31					0	0	0.132662	0	0
GCKR	2646	broad.mit.edu	37	2	27726407	27726407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:27726407C>T	uc002rky.2	+	9	737	c.671C>T	c.(670-672)TCA>TTA	p.S224L	GCKR_uc010ezd.2_Missense_Mutation_p.S224L|GCKR_uc010ylu.1_Missense_Mutation_p.S34L	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	224	SIS 1.				carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					GACTGGAGTTCAACATTCCGA	0.493													13	21					0	0	0.132662	0	0
FAM179A	165186	broad.mit.edu	37	2	29222116	29222116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:29222116G>A	uc010ezl.2	+	4	560	c.209G>A	c.(208-210)GGA>GAA	p.G70E	FAM179A_uc010ymm.1_Missense_Mutation_p.G70E	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	70							binding			ovary(3)|skin(1)	4						CGTGGACTCGGACAGCTGGGT	0.627													11	19					0	0	0.105934	0	0
FAM179A	165186	broad.mit.edu	37	2	29234362	29234362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:29234362C>T	uc010ezl.2	+	7	1223	c.872C>T	c.(871-873)TCT>TTT	p.S291F	FAM179A_uc010ymm.1_Missense_Mutation_p.S291F|FAM179A_uc002rmr.3_5'Flank	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	291							binding			ovary(3)|skin(1)	4						ACCCCTGCATCTCTGGGTACG	0.453													24	33					0	0	0.045705	0	0
FAM179A	165186	broad.mit.edu	37	2	29240077	29240077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:29240077G>A	uc010ezl.2	+	9	1453	c.1102G>A	c.(1102-1104)GAG>AAG	p.E368K	FAM179A_uc010ymm.1_Missense_Mutation_p.E368K|FAM179A_uc002rmr.3_Intron	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	368							binding			ovary(3)|skin(1)	4						GCAGATGAAGGAGATGGAGCT	0.557													42	44					0	0	0.117977	0	0
ALK	238	broad.mit.edu	37	2	29451801	29451801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:29451801C>T	uc002rmy.2	-	16	3671	c.2764G>A	c.(2764-2766)GGA>AGA	p.G922R		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	922	Gly-rich.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CCACCCCCTCCGAAACCCCCT	0.587			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				12	20					0	0	0.093190	0	0
CAPN13	92291	broad.mit.edu	37	2	30959436	30959436	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:30959436A>C	uc002rnn.2	-	17	1831	c.1655T>G	c.(1654-1656)CTG>CGG	p.L552R	CAPN13_uc002rnm.2_RNA	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	552	EF-hand 1.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					ATTCACTTTCAGCTGGGTAAG	0.552													18	35					0	0	0.049695	0	0
XDH	7498	broad.mit.edu	37	2	31569699	31569699	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:31569699T>C	uc002rnv.1	-	30	3366	c.3287A>G	c.(3286-3288)CAG>CGG	p.Q1096R		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1096					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CAAGATGGTCTGACAAGCCGC	0.542													53	57					0	0	0.139131	0	0
LTBP1	4052	broad.mit.edu	37	2	33335741	33335741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:33335741G>A	uc002ros.2	+	4	956	c.956G>A	c.(955-957)GGG>GAG	p.G319E		NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	319					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GCCCAGAAGGGGATTTCAGGA	0.493													61	51					0	0	0.139131	0	0
VIT	5212	broad.mit.edu	37	2	37041367	37041367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:37041367G>A	uc002rpl.2	+	16	2166	c.1945G>A	c.(1945-1947)GAG>AAG	p.E649K	VIT_uc002rpm.2_Missense_Mutation_p.E627K|VIT_uc010ezv.2_Missense_Mutation_p.E605K|VIT_uc010ezw.2_Missense_Mutation_p.E606K	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	634	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				GGCTGCCCAAGAGGAGCTAGA	0.512													22	25					0	0	0.091800	0	0
STRN	6801	broad.mit.edu	37	2	37076681	37076681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:37076681G>A	uc002rpn.2	-	18	2270	c.2261C>T	c.(2260-2262)TCG>TTG	p.S754L	STRN_uc010ezx.2_Missense_Mutation_p.S717L	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	754	WD 6.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				ATCATGAATCGATTCTTCAAA	0.393													24	27					0	0	0.099896	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48897029	48897029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:48897029G>A	uc010yol.1	+	6	3165	c.3118G>A	c.(3118-3120)GTA>ATA	p.V1040I	STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.V1087I|GTF2A1L_uc002rws.1_Missense_Mutation_p.V383I|GTF2A1L_uc010yom.1_Missense_Mutation_p.V349I|GTF2A1L_uc002rwt.2_Missense_Mutation_p.V383I	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	1040					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGATCTGAAGGTACCTGAAGA	0.403													26	36					0	0	0.116897	0	0
FSHR	2492	broad.mit.edu	37	2	49190986	49190986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:49190986C>T	uc002rww.2	-	10	1048	c.974G>A	c.(973-975)GGA>GAA	p.G325E	FSHR_uc002rwx.2_Missense_Mutation_p.G263E|FSHR_uc010fbn.2_Missense_Mutation_p.G299E	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	325	Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	CATGTCAAATCCTCTGCTGTA	0.443									Gonadal_Dysgenesis_46_XX				47	73					0	0	0.139131	0	0
NRXN1	9378	broad.mit.edu	37	2	50758484	50758484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:50758484G>A	uc010fbq.2	-	11	3825	c.2348C>T	c.(2347-2349)TCC>TTC	p.S783F	NRXN1_uc002rxb.3_Missense_Mutation_p.S415F|NRXN1_uc002rxe.3_Missense_Mutation_p.S743F|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GAACCGTAAGGAAACATCCTC	0.512													14	9					0	0	0.119110	0	0
NRXN1	9378	broad.mit.edu	37	2	50779866	50779866	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:50779866A>T	uc010fbq.2	-	9	3215	c.1738T>A	c.(1738-1740)TTC>ATC	p.F580I	NRXN1_uc002rxb.3_Missense_Mutation_p.F212I|NRXN1_uc002rxe.3_Missense_Mutation_p.F540I|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ATAGCAAAGAAGTCCACCTTT	0.448													27	73					0	0	0.125774	0	0
SPTBN1	6711	broad.mit.edu	37	2	54858274	54858274	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:54858274C>T	uc002rxu.2	+	16	3339	c.3090C>T	c.(3088-3090)GCC>GCT	p.A1030A	SPTBN1_uc002rxx.2_Silent_p.A1017A	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	1030	Spectrin 7.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CCGACCAGGCCCAGGCCATCC	0.637													26	47					0	0	0.125774	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188515	70188515	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:70188515G>A	uc002sfz.3	-	1	883	c.306C>T	c.(304-306)GTC>GTT	p.V102V		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	102	Extracellular (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						AAGGTTCCGGGACGAAGGCAT	0.577													22	45					0	0	0.099896	0	0
DGUOK	1716	broad.mit.edu	37	2	74154162	74154162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:74154162C>T	uc002sjx.2	+	1	210	c.125C>T	c.(124-126)TCC>TTC	p.S42F	DGUOK_uc002sjy.2_Missense_Mutation_p.S42F|DGUOK_uc002sjz.2_RNA	NM_080916	NP_550438	Q16854	DGUOK_HUMAN	deoxyguanosine kinase isoform a precursor	42					guanosine metabolic process|purine base metabolic process|purine deoxyribonucleoside metabolic process|purine-containing compound salvage	mitochondrial matrix	ATP binding|deoxyguanosine kinase activity|phosphotransferase activity, alcohol group as acceptor				0						CGAAGGCTCTCCATCGAAGGC	0.667													33	39					0	0	0.059317	0	0
RPIA	22934	broad.mit.edu	37	2	89049514	89049515	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:89049514_89049515CC>TT	uc002ste.2	+	9	896_897	c.855_856CC>TT	c.(853-858)GGCCTA>GGTTTA	p.285_286GL>GL		NM_144563	NP_653164	P49247	RPIA_HUMAN	ribose 5-phosphate isomerase A	285_286					pentose-phosphate shunt, non-oxidative branch	cytosol	ribose-5-phosphate isomerase activity			ovary(1)	1		Acute lymphoblastic leukemia(2;0.000456)|all_hematologic(2;0.00287)				TGGACACAGGCCTATTCATCAA	0.49													24	40					0	0	0.115264	0	0
SNRNP200	23020	broad.mit.edu	37	2	96956442	96956442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:96956442C>T	uc002svu.2	-	19	2619	c.2533G>A	c.(2533-2535)GGA>AGA	p.G845R	SNRNP200_uc002svw.1_5'Flank	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	845	Helicase C-terminal 1.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						TCCAGTGCTCCCAGTTCTGTC	0.507													62	79					0	0	0.139131	0	0
IL18R1	8809	broad.mit.edu	37	2	103011085	103011085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:103011085G>A	uc002tbw.3	+	10	1418	c.1268G>A	c.(1267-1269)GGA>GAA	p.G423E	IL18R1_uc010ywc.1_Missense_Mutation_p.G422E|IL18R1_uc010ywd.1_Missense_Mutation_p.G267E|IL18R1_uc010fiy.2_Missense_Mutation_p.G423E	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	423	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						GTGCCTGGAGGAGGTAAGAGG	0.408													14	17					0	0	0.038395	0	0
IL18R1	8809	broad.mit.edu	37	2	103013227	103013227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:103013227G>A	uc002tbw.3	+	11	1657	c.1507G>A	c.(1507-1509)GAT>AAT	p.D503N	IL18R1_uc010ywc.1_Missense_Mutation_p.D502N|IL18R1_uc010ywd.1_Missense_Mutation_p.D347N|IL18R1_uc010fiy.2_Missense_Mutation_p.D503N	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	503	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						GTGGAAGGCCGATAAATCTCT	0.388													40	58					0	0	0.117977	0	0
RGPD4	285190	broad.mit.edu	37	2	108488493	108488493	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:108488493G>C	uc010ywk.1	+	20	4115	c.4033G>C	c.(4033-4035)GTT>CTT	p.V1345L	RGPD4_uc002tdu.2_Missense_Mutation_p.V532L|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1345	RanBD1 2.				intracellular transport		binding			skin(2)	2						ACCTGATCTAGTTGAAGTATC	0.403													82	157					0	0	0.139131	0	0
PSD4	23550	broad.mit.edu	37	2	113940600	113940600	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:113940600C>T	uc002tjc.2	+	2	750	c.567C>T	c.(565-567)CCC>CCT	p.P189P	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Silent_p.P188P|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	189					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GCTGTCTCCCCACGCCCCCTG	0.642													23	28					0	0	0.069288	0	0
MARCO	8685	broad.mit.edu	37	2	119727733	119727733	+	Silent	SNP	C	T	T	rs75633112		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:119727733C>T	uc002tln.1	+	3	375	c.243C>T	c.(241-243)TTC>TTT	p.F81F	MARCO_uc010yyf.1_Silent_p.F3F	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	81	Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGATGTATTTCCTCAATGACA	0.582													27	45					0	0	0.144211	0	0
C1QL2	165257	broad.mit.edu	37	2	119915271	119915272	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:119915271_119915272GT>AA	uc002tlo.2	-	1	1200_1201	c.574_575AC>TT	c.(574-576)ACG>TTG	p.T192L		NM_182528	NP_872334	Q7Z5L3	C1QL2_HUMAN	complement component 1, q subcomponent-like 2	192	C1q.					collagen				pancreas(1)	1						GAACTTGCCCGTGGTGGGGTCA	0.594										HNSCC(49;0.14)			6	26					0	0	0.115264	0	0
TMEM177	80775	broad.mit.edu	37	2	120438540	120438540	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:120438540C>T	uc010flg.1	+	2	584	c.111C>T	c.(109-111)TTC>TTT	p.F37F	TMEM177_uc002tme.2_Intron|TMEM177_uc002tmc.1_Silent_p.F37F|TMEM177_uc002tmd.2_Silent_p.F37F|TMEM177_uc010flh.2_Silent_p.F37F	NM_001105198	NP_001098668	Q53S58	TM177_HUMAN	transmembrane protein 177	37	Helical; (Potential).					integral to membrane				ovary(1)	1	Colorectal(110;0.196)					ACCACCTCTTCCCGGATCCCG	0.612													44	60					0	0	0.139131	0	0
GLI2	2736	broad.mit.edu	37	2	121745787	121745787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:121745787C>T	uc010flp.2	+	13	2327	c.2297C>T	c.(2296-2298)TCC>TTC	p.S766F	GLI2_uc002tmq.1_Missense_Mutation_p.S438F|GLI2_uc002tmr.1_Missense_Mutation_p.S421F|GLI2_uc002tmt.3_Missense_Mutation_p.S438F|GLI2_uc002tmu.3_Missense_Mutation_p.S421F	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	766					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CCCGCAGGCTCCATCCTGGAA	0.572													17	25					0	0	0.043863	0	0
PROC	5624	broad.mit.edu	37	2	128178999	128178999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:128178999G>A	uc002tok.2	+	3	284	c.211G>A	c.(211-213)GAA>AAA	p.E71K	PROC_uc002tol.2_Missense_Mutation_p.E92K|PROC_uc010yzi.1_Missense_Mutation_p.E92K|PROC_uc010yzj.1_5'UTR|PROC_uc010yzk.1_Missense_Mutation_p.E92K|PROC_uc002tom.2_Missense_Mutation_p.E71K	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	71	Gla.				blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	GGAGGCCAAGGAAATTTTCCA	0.587													5	25					0	0	0.021553	0	0
CCDC74B	91409	broad.mit.edu	37	2	130899720	130899720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:130899720G>A	uc002tqm.1	-	3	592	c.530C>T	c.(529-531)TCC>TTC	p.S177F	CCDC74B_uc010yzw.1_Missense_Mutation_p.S279F|CCDC74B_uc002tqn.1_Missense_Mutation_p.S111F|CCDC74B_uc010yzx.1_3'UTR	NM_207310	NP_997193	Q96LY2	CC74B_HUMAN	coiled-coil domain containing 74B	177											0	Colorectal(110;0.1)					ATTAGAGATGGACTTGACAGA	0.642													10	25					0	0	0.080935	0	0
FAM123C	205147	broad.mit.edu	37	2	131521567	131521567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:131521567C>T	uc002trw.2	+	2	2112	c.1922C>T	c.(1921-1923)TCC>TTC	p.S641F	FAM123C_uc010fmv.2_Missense_Mutation_p.S641F|FAM123C_uc010fms.1_Missense_Mutation_p.S641F|FAM123C_uc010fmt.1_Missense_Mutation_p.S641F|FAM123C_uc010fmu.1_Missense_Mutation_p.S641F	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	641										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		TGGCCCTGCTCCCAGAAGGAG	0.592													15	12					0	0	0.119110	0	0
LCT	3938	broad.mit.edu	37	2	136561681	136561681	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:136561681C>G	uc002tuu.1	-	11	4493	c.4482G>C	c.(4480-4482)TGG>TGC	p.W1494C		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1494	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GTGGTAGGTCCCAGTGGTAAA	0.532													18	30					0	0	0.038395	0	0
LRP1B	53353	broad.mit.edu	37	2	141459360	141459360	+	Silent	SNP	C	T	T	rs139951414	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:141459360C>T	uc002tvj.1	-	40	7329	c.6357G>A	c.(6355-6357)ACG>ACA	p.T2119T		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2119	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCATGGTTATCGTTTCTGTGG	0.413										TSP Lung(27;0.18)			27	41					0	0	0.116897	0	0
MBD5	55777	broad.mit.edu	37	2	149221445	149221445	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:149221445C>T	uc002twm.3	+	8	1342	c.354C>T	c.(352-354)GCC>GCT	p.A118A	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Silent_p.A118A	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	118						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GCATGGAAGCCCCACATCCTT	0.443													13	34					0	0	0.093190	0	0
RIF1	55183	broad.mit.edu	37	2	152319619	152319619	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:152319619C>T	uc002txm.2	+	30	3715	c.3585C>T	c.(3583-3585)TTC>TTT	p.F1195F	RIF1_uc002txl.2_Silent_p.F1195F|RIF1_uc002txn.2_Silent_p.F1195F|RIF1_uc002txo.2_Silent_p.F1195F|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1195					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AAAATTCTTTCGTTGTCAGCA	0.368													22	39					0	0	0.069288	0	0
NEB	4703	broad.mit.edu	37	2	152501044	152501044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:152501044C>T	uc010fnx.2	-	56	7773	c.7582G>A	c.(7582-7584)GAT>AAT	p.D2528N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2528	Nebulin 68.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ACAGGAAGATCGTAACCTTTT	0.388													41	44					0	0	0.117977	0	0
NEB	4703	broad.mit.edu	37	2	152550915	152550915	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:152550915C>T	uc010fnx.2	-	20	2009	c.1818G>A	c.(1816-1818)GGG>GGA	p.G606G	NEB_uc010fny.1_Silent_p.G160G	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	606					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAATCATTTTCCCTTTGTTTT	0.443													72	88					0	0	0.139131	0	0
BAZ2B	29994	broad.mit.edu	37	2	160194130	160194131	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:160194130_160194131GG>AA	uc002uao.2	-	32	5959_5960	c.5607_5608CC>TT	c.(5605-5610)CCCCTA>CCTTTA	p.1869_1870PL>PL	BAZ2B_uc002uap.2_Silent_p.1833_1834PL>PL	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1869_1870					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						GCTATATCTAGGGGGTTGTCAC	0.431													68	92					0	0	0.115264	0	0
XIRP2	129446	broad.mit.edu	37	2	167760167	167760167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:167760167C>T	uc002udx.2	+	1	193	c.175C>T	c.(175-177)CCC>TCC	p.P59S	XIRP2_uc010fpn.2_Missense_Mutation_p.P59S|XIRP2_uc010fpo.2_Missense_Mutation_p.P59S|XIRP2_uc010fpp.2_Missense_Mutation_p.P59S	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	Error:Variant_position_missing_in_A4UGR9_after_alignment					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATCTTTGGATCCCACAAGTCT	0.498													14	21					0	0	0.132662	0	0
XIRP2	129446	broad.mit.edu	37	2	168101932	168101932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:168101932C>T	uc002udx.2	+	8	4048	c.4030C>T	c.(4030-4032)CAT>TAT	p.H1344Y	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.H1169Y|XIRP2_uc010fpq.2_Missense_Mutation_p.H1122Y|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1169					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGAGGTAATTCATGGAGATGT	0.383													19	21					0	0	0.049695	0	0
C2orf77	129881	broad.mit.edu	37	2	170510670	170510670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:170510670C>T	uc002ufe.2	-	6	968	c.874G>A	c.(874-876)GAA>AAA	p.E292K		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	292	Potential.										0						TCATCTTCTTCCTCTTGCTGC	0.328													5	5					0	0	0.014758	0	0
ZAK	51776	broad.mit.edu	37	2	174104179	174104180	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:174104179_174104180GG>AA	uc002uhz.2	+	16	1514_1515	c.1314_1315GG>AA	c.(1312-1317)CTGGAA>CTAAAA	p.E439K	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	439					activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			TAGTGAACCTGGAACTGGTTTT	0.366													12	20					0	0	0.115264	0	0
CHN1	1123	broad.mit.edu	37	2	175742644	175742644	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:175742644T>C	uc002uji.2	-	6	1003	c.473A>G	c.(472-474)AAA>AGA	p.K158R	CHN1_uc010zeq.1_Missense_Mutation_p.K158R|CHN1_uc002ujj.2_Intron	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	158					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			CATATGTTTTTTGTATGCTGG	0.418			T	TAF15	extraskeletal myxoid chondrosarcoma								50	47					0	0	0.139131	0	0
PDE11A	50940	broad.mit.edu	37	2	178936668	178936668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:178936668G>A	uc002ulq.2	-	1	815	c.497C>T	c.(496-498)CCC>CTC	p.P166L	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	166					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			GGCTGTGGTGGGGGGCAGGGA	0.572									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				30	42					0	0	0.045705	0	0
OSBPL6	114880	broad.mit.edu	37	2	179238631	179238631	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179238631C>T	uc002ulx.2	+	15	1788	c.1410C>T	c.(1408-1410)ATC>ATT	p.I470I	OSBPL6_uc002ulw.2_Silent_p.I403I|OSBPL6_uc002uly.2_Silent_p.I495I|OSBPL6_uc010zfe.1_Silent_p.I439I|OSBPL6_uc002ulz.2_Silent_p.I434I|OSBPL6_uc002uma.2_Silent_p.I474I	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	470					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			GTGAGCAAATCCATGTCAGTC	0.453													16	23					0	0	0.038395	0	0
TTN	7273	broad.mit.edu	37	2	179407083	179407083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179407083C>T	uc010zfg.1	-	298	89920	c.89696G>A	c.(89695-89697)GGA>GAA	p.G29899E	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G23594E|TTN_uc010zfi.1_Missense_Mutation_p.G23527E|TTN_uc010zfj.1_Missense_Mutation_p.G23402E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30826							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACTCATTTCCTTCGGTGAG	0.507													13	18					0	0	0.105934	0	0
TTN	7273	broad.mit.edu	37	2	179433243	179433243	+	Silent	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179433243A>T	uc010zfg.1	-	275	70136	c.69912T>A	c.(69910-69912)GTT>GTA	p.V23304V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V16999V|TTN_uc010zfi.1_Silent_p.V16932V|TTN_uc010zfj.1_Silent_p.V16807V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24231							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAACATTGGCAACTGTGATTC	0.408													37	42					0	0	0.059317	0	0
TTN	7273	broad.mit.edu	37	2	179441663	179441663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179441663C>T	uc010zfg.1	-	273	61919	c.61695G>A	c.(61693-61695)ATG>ATA	p.M20565I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.M14260I|TTN_uc010zfi.1_Missense_Mutation_p.M14193I|TTN_uc010zfj.1_Missense_Mutation_p.M14068I|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21492							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTGTCTACCATTTTGACAG	0.393													88	115					0	0	0.139131	0	0
TTN	7273	broad.mit.edu	37	2	179444752	179444753	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179444752_179444753CC>AT	uc010zfg.1	-	267	59781_59782	c.59557_59558GG>AT	c.(59557-59559)GGA>ATA	p.G19853I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G13548I|TTN_uc010zfi.1_Missense_Mutation_p.G13481I|TTN_uc010zfj.1_Missense_Mutation_p.G13356I|uc002umv.1_3'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20780							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGGATTTTCCCTCCTCCAAA	0.441													53	67					0	0	0.115264	0	0
TTN	7273	broad.mit.edu	37	2	179454889	179454889	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179454889C>T	uc010zfg.1	-	253	54083	c.53859G>A	c.(53857-53859)AAG>AAA	p.K17953K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K11648K|TTN_uc010zfi.1_Silent_p.K11581K|TTN_uc010zfj.1_Silent_p.K11456K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18880							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTCCACCCTCTTTTCTCGGA	0.438													58	76					0	0	0.139131	0	0
TTN	7273	broad.mit.edu	37	2	179457237	179457237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179457237C>T	uc010zfg.1	-	250	52015	c.51791G>A	c.(51790-51792)AGA>AAA	p.R17264K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R10959K|TTN_uc010zfi.1_Missense_Mutation_p.R10892K|TTN_uc010zfj.1_Missense_Mutation_p.R10767K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18191							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACATCAATTCTTGCTTTAGT	0.403													107	154					0	0	0.139131	0	0
TTN	7273	broad.mit.edu	37	2	179458760	179458760	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179458760A>C	uc010zfg.1	-	246	50880	c.50656T>G	c.(50656-50658)TCC>GCC	p.S16886A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S10581A|TTN_uc010zfi.1_Missense_Mutation_p.S10514A|TTN_uc010zfj.1_Missense_Mutation_p.S10389A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17813							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTTGCCGGAATCTGAACGT	0.408													44	94					0	0	0.111260	0	0
TTN	7273	broad.mit.edu	37	2	179474049	179474049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179474049C>T	uc010zfg.1	-	222	44508	c.44284G>A	c.(44284-44286)GGA>AGA	p.G14762R	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G8457R|TTN_uc010zfi.1_Missense_Mutation_p.G8390R|TTN_uc010zfj.1_Missense_Mutation_p.G8265R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15689							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAGATTCTCCCTTTTTGCTG	0.463													12	27					0	0	0.119110	0	0
TTN	7273	broad.mit.edu	37	2	179497991	179497991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179497991G>A	uc010zfg.1	-	182	35529	c.35305C>T	c.(35305-35307)CAC>TAC	p.H11769Y	TTN_uc010zfh.1_Missense_Mutation_p.H5464Y|TTN_uc010zfi.1_Missense_Mutation_p.H5397Y|TTN_uc010zfj.1_Missense_Mutation_p.H5272Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12696							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTCAAAGTGGGCTGTTTCA	0.413													39	50					0	0	0.104719	0	0
TTN	7273	broad.mit.edu	37	2	179528791	179528791	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179528791C>T	uc010zfk.1	-	14	1301	c.753G>A	c.(751-753)AAG>AAA	p.K251K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11463							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCGACACTTTCTTTTCAGGGA	0.383													32	47					0	0	0.111260	0	0
TTN	7273	broad.mit.edu	37	2	179542444	179542444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179542444G>A	uc010zfg.1	-	143	30687	c.30463C>T	c.(30463-30465)CCT>TCT	p.P10155S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P6816S|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11082							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTCGGGAGGAACTTCCTCT	0.448													49	67					0	0	0.139131	0	0
TTN	7273	broad.mit.edu	37	2	179566919	179566919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179566919C>T	uc010zfg.1	-	105	26979	c.26755G>A	c.(26755-26757)GCA>ACA	p.A8919T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.A5580T|TTN_uc010fre.1_Missense_Mutation_p.A30T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9846							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACAGCTCTGCCGTGCTTCTT	0.478													18	30					0	0	0.055883	0	0
TTN	7273	broad.mit.edu	37	2	179580331	179580331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179580331C>T	uc010zfg.1	-	86	22302	c.22078G>A	c.(22078-22080)GTG>ATG	p.V7360M	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V4021M	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8287							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCACAGCCACCGAGTCAACG	0.468													13	24					0	0	0.093190	0	0
TTN	7273	broad.mit.edu	37	2	179581966	179581966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179581966C>T	uc010zfg.1	-	85	21987	c.21763G>A	c.(21763-21765)GGA>AGA	p.G7255R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G3916R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8182							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGTTGCCTCCAGGGCGAATC	0.458													19	39					0	0	0.055883	0	0
TTN	7273	broad.mit.edu	37	2	179587434	179587434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179587434C>T	uc010zfg.1	-	73	18684	c.18460G>A	c.(18460-18462)GAA>AAA	p.E6154K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E2815K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7081							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACTATTTTCTGCTTTGCAT	0.338													11	20					0	0	0.080935	0	0
TTN	7273	broad.mit.edu	37	2	179616204	179616204	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179616204G>A	uc002unb.2	-	46	11147	c.10923C>T	c.(10921-10923)CCC>CCT	p.P3641P	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTGTTAAAGGGAGAGCCAG	0.373													42	50					0	0	0.117977	0	0
TTN	7273	broad.mit.edu	37	2	179629430	179629430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179629430G>A	uc010zfg.1	-	42	10036	c.9812C>T	c.(9811-9813)TCC>TTC	p.S3271F	TTN_uc010zfh.1_Missense_Mutation_p.S3225F|TTN_uc010zfi.1_Missense_Mutation_p.S3225F|TTN_uc010zfj.1_Missense_Mutation_p.S3225F|TTN_uc002umz.1_5'Flank|TTN_uc002unb.2_Missense_Mutation_p.S3271F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3271							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTGTACCAGGAAATTTTGGG	0.527													51	74					0	0	0.139131	0	0
CCDC141	285025	broad.mit.edu	37	2	179714790	179714790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:179714790C>T	uc002unf.1	-	11	1675	c.1618G>A	c.(1618-1620)GAA>AAA	p.E540K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	540							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			AGTTTTTCTTCGAGCTCTGTG	0.323													23	38					0	0	0.076483	0	0
PDE1A	5136	broad.mit.edu	37	2	183070667	183070667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:183070667C>T	uc002uos.2	-	9	1034	c.950G>A	c.(949-951)AGG>AAG	p.R317K	PDE1A_uc010zfp.1_Missense_Mutation_p.R213K|PDE1A_uc002uoq.1_Missense_Mutation_p.R317K|PDE1A_uc010zfq.1_Missense_Mutation_p.R317K|PDE1A_uc002uor.2_Missense_Mutation_p.R301K|PDE1A_uc002uou.2_Missense_Mutation_p.R283K	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	317	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TGAAACTCACCTCCAGTCATC	0.363													7	23					0	0	0.047766	0	0
FAM171B	165215	broad.mit.edu	37	2	187627382	187627382	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:187627382C>T	uc002ups.2	+	8	2425	c.2313C>T	c.(2311-2313)ATC>ATT	p.I771I	FAM171B_uc002upr.1_Silent_p.I738I|FAM171B_uc002upt.2_Silent_p.I240I	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	771	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						GTGGAGTGATCATGGAGCACC	0.502													21	40					0	0	0.055883	0	0
COL3A1	1281	broad.mit.edu	37	2	189850473	189850473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:189850473G>A	uc002uqj.1	+	4	533	c.416G>A	c.(415-417)GGA>GAA	p.G139E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	139					axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGCCCCCCTGGAATCTGTGAA	0.448													21	27					0	0	0.091800	0	0
COL5A2	1290	broad.mit.edu	37	2	189931456	189931456	+	Missense_Mutation	SNP	G	A	A	rs145281966	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:189931456G>A	uc002uqk.2	-	22	1729	c.1454C>T	c.(1453-1455)CCA>CTA	p.P485L	COL5A2_uc010frx.2_Intron	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	485					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			AAACCTTACTGGTTCCCCTTT	0.348													35	57					0	0	0.074837	0	0
MSTN	2660	broad.mit.edu	37	2	190922148	190922148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:190922148G>A	uc002urp.2	-	3	1097	c.964C>T	c.(964-966)CCT>TCT	p.P322S		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	322					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity	p.P322L(1)		lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TGAGTATGAGGATATTTTTGT	0.393													22	21					0	0	0.062417	0	0
STAT1	6772	broad.mit.edu	37	2	191872349	191872349	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:191872349G>A	uc002usj.2	-	5	700	c.312C>T	c.(310-312)ATC>ATT	p.I104I	STAT1_uc010fse.1_Silent_p.I104I|STAT1_uc002usk.2_Silent_p.I104I|STAT1_uc002usl.2_Silent_p.I106I|STAT1_uc010fsf.1_5'UTR	NM_007315	NP_009330	P42224	STAT1_HUMAN	signal transducer and activator of transcription	104					activation of caspase activity|I-kappaB kinase/NF-kappaB cascade|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway|tyrosine phosphorylation of STAT protein	cytosol|nucleolus|nucleoplasm	calcium ion binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|signal transducer activity			lung(3)|breast(3)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00434)|Epithelial(96;0.0555)|all cancers(119;0.141)		Fludarabine(DB01073)	AGCTGTAAATGATCATAGACA	0.308													23	52					0	0	0.108266	0	0
DNAH7	56171	broad.mit.edu	37	2	196788389	196788389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:196788389G>A	uc002utj.3	-	23	3856	c.3755C>T	c.(3754-3756)TCA>TTA	p.S1252L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1252	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTTACAAGTGATGAGAGGAC	0.408													27	27					0	0	0.125774	0	0
AOX1	316	broad.mit.edu	37	2	201462197	201462197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:201462197G>A	uc002uvx.2	+	4	379	c.278G>A	c.(277-279)GGA>GAA	p.G93E		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	93					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	GAAGGCATAGGAAGCACCCAC	0.478													19	34					0	0	0.099896	0	0
CASP10	843	broad.mit.edu	37	2	202050821	202050821	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:202050821C>T	uc002uxl.1	+	2	739	c.321C>T	c.(319-321)CCC>CCT	p.P107P	CASP10_uc002uxi.1_Silent_p.P107P|CASP10_uc010zhn.1_RNA|CASP10_uc002uxj.1_Silent_p.P107P|CASP10_uc002uxk.1_Silent_p.P107P|CASP10_uc010fta.1_Silent_p.P107P|CASP10_uc002uxm.1_Silent_p.P107P|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	107					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						GACTGCTGCCCACCCGACAAA	0.522													16	33					0	0	0.038395	0	0
IKZF2	22807	broad.mit.edu	37	2	213872467	213872467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:213872467G>A	uc002vem.2	-	8	1367	c.1198C>T	c.(1198-1200)CCC>TCC	p.P400S	IKZF2_uc010fuu.2_Missense_Mutation_p.P255S|IKZF2_uc002vej.2_Missense_Mutation_p.P347S|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Missense_Mutation_p.P326S|IKZF2_uc002vel.2_Missense_Mutation_p.P321S|IKZF2_uc010fuw.2_Missense_Mutation_p.P174S|IKZF2_uc010fux.2_Missense_Mutation_p.P174S|IKZF2_uc010fuy.2_Missense_Mutation_p.P328S|IKZF2_uc002ven.2_Missense_Mutation_p.P374S|IKZF2_uc002vei.2_Missense_Mutation_p.P178S	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	400					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		CTATTGCTGGGAGAGGCCTCT	0.507													54	72					0	0	0.139131	0	0
ABCA12	26154	broad.mit.edu	37	2	215802328	215802328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:215802328C>T	uc002vew.2	-	51	7668	c.7448G>A	c.(7447-7449)GGA>GAA	p.G2483E	ABCA12_uc002vev.2_Missense_Mutation_p.G2165E|ABCA12_uc010zjn.1_Missense_Mutation_p.G1410E	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2483	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GACAGTAAATCCTCGTCCAAA	0.363													22	29					0	0	0.076483	0	0
VIL1	7429	broad.mit.edu	37	2	219297644	219297644	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:219297644C>T	uc002via.2	+	13	1535	c.1470C>T	c.(1468-1470)TCC>TCT	p.S490S	VIL1_uc010zke.1_Silent_p.S179S|VIL1_uc002vib.2_Silent_p.S490S	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	490	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ATCTTATGTCCATCTTCAAGG	0.547													20	26					0	0	0.043863	0	0
WNT10A	80326	broad.mit.edu	37	2	219757713	219757713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:219757713C>T	uc002vjd.1	+	4	1437	c.974C>T	c.(973-975)CCC>CTC	p.P325L		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	325					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ccgggcgctcccgggccgcgc	0.448													7	5					0	0	0.029380	0	0
IHH	3549	broad.mit.edu	37	2	219920510	219920510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:219920510C>T	uc002vjo.1	-	3	655	c.655G>A	c.(655-657)GCC>ACC	p.A219T		NM_002181	NP_002172	Q14623	IHH_HUMAN	Indian hedgehog homolog precursor	219					cell-cell signaling|intein-mediated protein splicing|proteolysis	extracellular space|plasma membrane	cholesterol binding|patched binding|peptidase activity			breast(1)	1		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000188)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCTGACAAGGCCACACGCGCC	0.667													25	18					0	0	0.091800	0	0
SPEG	10290	broad.mit.edu	37	2	220349257	220349257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:220349257G>A	uc010fwg.2	+	30	7072	c.7072G>A	c.(7072-7074)GAG>AAG	p.E2358K		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2358	Arg-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TTCGCGCTCGGAGGAGCGCGG	0.716													4	5					0	0	0.021553	0	0
OBSL1	23363	broad.mit.edu	37	2	220431775	220431775	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:220431775G>A	uc010fwk.2	-	5	1968	c.1911C>T	c.(1909-1911)CTC>CTT	p.L637L	OBSL1_uc010fwl.1_Silent_p.L112L|OBSL1_uc002vmi.2_Silent_p.L637L|OBSL1_uc002vmj.2_Silent_p.L224L	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	637					cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		TGGAGAGATCGAGGGAGAAGA	0.612													8	7					0	0	0.038147	0	0
TM4SF20	79853	broad.mit.edu	37	2	228228526	228228526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:228228526C>T	uc002vpb.2	-	4	642	c.604G>A	c.(604-606)GAG>AAG	p.E202K		NM_024795	NP_079071	Q53R12	T4S20_HUMAN	transmembrane 4 L six family member 20	202	Helical; (Potential).					integral to membrane|plasma membrane					0		Renal(207;0.025)|all_lung(227;0.123)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;3.8e-11)|all cancers(144;2.57e-08)|Lung(261;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0115)		AACAGGACCTCCAGAATTCCA	0.418													41	58					0	0	0.111260	0	0
C2orf83	56918	broad.mit.edu	37	2	228476360	228476360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:228476360G>A	uc002vph.2	-	3	438	c.203C>T	c.(202-204)TCT>TTT	p.S68F	C2orf83_uc010zlu.1_3'UTR	NM_020161	NP_064546	Q53S99	CB083_HUMAN	hypothetical protein LOC56918 isoform 1	68						membrane	folic acid binding|reduced folate carrier activity				0						TAGTTTCTCAGATGGACTTAA	0.423													24	26					0	0	0.108266	0	0
ATG16L1	55054	broad.mit.edu	37	2	234198983	234198983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:234198983C>T	uc002vty.2	+	14	1671	c.1414C>T	c.(1414-1416)CGT>TGT	p.R472C	ATG16L1_uc002vtx.1_Missense_Mutation_p.R309C|ATG16L1_uc002vua.2_Missense_Mutation_p.R453C|ATG16L1_uc002vub.2_Missense_Mutation_p.R330C|ATG16L1_uc002vtz.2_Missense_Mutation_p.R293C|ATG16L1_uc002vud.3_Missense_Mutation_p.R388C	NM_030803	NP_110430	Q676U5	A16L1_HUMAN	APG16 autophagy 16-like isoform 1	472	WD 4.				autophagic vacuole assembly|protein homooligomerization|protein transport	autophagic vacuole|pre-autophagosomal structure membrane	protein binding				0		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0539)		Epithelial(121;1.53e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000379)|LUSC - Lung squamous cell carcinoma(224;0.00619)|Lung(119;0.00732)|GBM - Glioblastoma multiforme(43;0.11)		CAAGAAAATTCGTTTCTGGGA	0.418													21	41					0	0	0.062417	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581115	234581115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:234581115G>A	uc002vus.2	+	1	572	c.535G>A	c.(535-537)GAA>AAA	p.E179K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.E179K	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	179					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	CTATCTTGAAGAAGGTGCACA	0.473													85	119					0	0	0.139131	0	0
UGT1A7	54577	broad.mit.edu	37	2	234590615	234590615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:234590615C>T	uc002vut.2	+	1	32	c.32C>T	c.(31-33)CCC>CTC	p.P11L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.P11L	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	11					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GGCCTCCTTCCCCTATATGTG	0.542											OREG0003832	type=REGULATORY REGION|Gene=UGT1A7|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	49	76					0	0	0.139131	0	0
UGT1A7	54577	broad.mit.edu	37	2	234590995	234590995	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:234590995A>C	uc002vut.2	+	1	412	c.412A>C	c.(412-414)AAG>CAG	p.K138Q	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.K138Q	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	138					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		AGAATACTTAAAGGAGAGTTG	0.373													60	87					0	0	0.139131	0	0
ANKMY1	51281	broad.mit.edu	37	2	241448827	241448827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:241448827G>A	uc002vyz.1	-	11	2294	c.2065C>T	c.(2065-2067)CCT>TCT	p.P689S	ANKMY1_uc002vza.1_Intron|ANKMY1_uc010fzd.1_Missense_Mutation_p.P778S|ANKMY1_uc002vzb.1_Missense_Mutation_p.P450S|ANKMY1_uc002vzc.1_Intron|ANKMY1_uc002vzd.1_Intron	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	689	ANK 5.						zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		AGCAGGTTAGGATTTGCTCCG	0.577													3	11					0	0	0.009096	0	0
PASK	23178	broad.mit.edu	37	2	242080011	242080011	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:242080011C>T	uc002wao.1	-	3	446	c.354G>A	c.(352-354)TGG>TGA	p.W118*	PASK_uc010zol.1_Intron|PASK_uc010zom.1_Nonsense_Mutation_p.W118*|PASK_uc010fzl.1_Nonsense_Mutation_p.W118*|PASK_uc010zon.1_Intron|PASK_uc002waq.2_Nonsense_Mutation_p.W118*	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	118					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		GAGGTGAGGACCACCCTGAGG	0.607													11	18					0	0	0.080935	0	0
SIRPD	128646	broad.mit.edu	37	20	1532579	1532579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:1532579C>T	uc002wfi.2	-	2	223	c.179G>A	c.(178-180)GGA>GAA	p.G60E		NM_178460	NP_848555	Q9H106	SIRPD_HUMAN	signal-regulatory protein delta precursor	60	Ig-like V-type.					extracellular region				ovary(1)|kidney(1)|skin(1)	3						CAAGACAGGTCCATTTGGTAA	0.443													37	35					0	0	0.064281	0	0
FAM113A	64773	broad.mit.edu	37	20	2816191	2816192	+	Missense_Mutation	DNP	GC	AA	AA	rs147076858		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:2816191_2816192GC>AA	uc002wgz.1	-	8	1778_1779	c.1281_1282GC>TT	c.(1279-1284)CAGCGG>CATTGG	p.427_428QR>HW	FAM113A_uc002whb.1_Missense_Mutation_p.278_279QR>HW|FAM113A_uc002wha.1_Missense_Mutation_p.278_279QR>HW|FAM113A_uc010zqa.1_Missense_Mutation_p.274_275QR>HW|FAM113A_uc002whc.1_Missense_Mutation_p.376_377QR>HW	NM_022760	NP_073597	Q9H1Q7	F113A_HUMAN	hypothetical protein LOC64773	427_428							hydrolase activity|protein binding			ovary(2)	2						TGTCTGAGCCGCTGCCTGCAGG	0.624													15	30					0	0	0.115264	0	0
FERMT1	55612	broad.mit.edu	37	20	6088183	6088183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:6088183G>A	uc002wmr.2	-	6	1634	c.845C>T	c.(844-846)CCT>CTT	p.P282L	FERMT1_uc010gbt.2_Missense_Mutation_p.P25L|FERMT1_uc002wms.2_Missense_Mutation_p.P282L|FERMT1_uc002wmt.2_Missense_Mutation_p.P25L	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	282	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						GCTTACTTTAGGATTCAAGTC	0.353													8	22					0	0	0.038147	0	0
PLCB1	23236	broad.mit.edu	37	20	8722119	8722119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:8722119G>A	uc002wnb.2	+	23	2425	c.2422G>A	c.(2422-2424)GAA>AAA	p.E808K	PLCB1_uc010zrb.1_Missense_Mutation_p.E707K|PLCB1_uc002wna.2_Missense_Mutation_p.E808K|PLCB1_uc002wnc.1_Missense_Mutation_p.E707K|PLCB1_uc002wnd.1_Missense_Mutation_p.E385K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	808					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						AGATGTCATCGAAGCTTTATC	0.299													7	12					0	0	0.038147	0	0
C20orf103	24141	broad.mit.edu	37	20	9496135	9496135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:9496135G>A	uc002wni.1	+	2	329	c.100G>A	c.(100-102)GAA>AAA	p.E34K	C20orf103_uc010zrc.1_Missense_Mutation_p.E34K	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	34	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			ACAAGAAGTGGAAAATCTCTC	0.473													28	47					0	0	0.116897	0	0
MKKS	8195	broad.mit.edu	37	20	10393632	10393632	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:10393632C>T	uc002wnt.1	-	3	1418	c.531G>A	c.(529-531)TTG>TTA	p.L177L	MKKS_uc002wnu.1_Silent_p.L177L|MKKS_uc010zrd.1_Intron	NM_018848	NP_061336	Q9NPJ1	MKKS_HUMAN	McKusick-Kaufman syndrome protein	177					brain morphogenesis|cerebral cortex development|convergent extension involved in gastrulation|detection of mechanical stimulus involved in sensory perception of sound|fat cell differentiation|flagellum assembly|gonad development|heart looping|hippocampus development|intracellular transport|melanosome transport|photoreceptor cell maintenance|pigment granule aggregation in cell center|protein folding|regulation of cilium beat frequency involved in ciliary motility|sensory perception of smell|social behavior|spermatid development|striatum development	cytosol|microtubule organizing center|motile cilium	ATP binding|unfolded protein binding				0						CTCTCAGGATCAAAGCACTGA	0.383									Bardet-Biedl_syndrome				22	35					0	0	0.076483	0	0
DEFB123	245936	broad.mit.edu	37	20	30037904	30037904	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:30037904T>A	uc002wvy.2	+	2	222	c.131T>A	c.(130-132)GTT>GAT	p.V44D		NM_153324	NP_697019	Q8N688	DB123_HUMAN	defensin, beta 123 precursor	44					defense response to bacterium	extracellular region					0	Lung NSC(7;0.000139)|all_lung(7;0.000197)|all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			AGAGTCTATGTTTACTGCATA	0.433													30	50					0	0	0.134883	0	0
DUSP15	128853	broad.mit.edu	37	20	30436348	30436348	+	Silent	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:30436348A>G	uc002wwu.1	-	10	824	c.747T>C	c.(745-747)CCT>CCC	p.P249P	FOXS1_uc002wwt.1_5'Flank			Q9H1R2	DUS15_HUMAN	RecName: Full=Dual specificity protein phosphatase 15;          EC=3.1.3.48;          EC=3.1.3.16; AltName: Full=Vaccinia virus VH1-related dual-specific protein phosphatase Y; AltName: Full=VH1-related member Y;	249						cytoplasm|plasma membrane	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			ACGAGCTCCCAGGCCGAAGCT	0.637													4	8					0	0	0.014758	0	0
ASXL1	171023	broad.mit.edu	37	20	31024037	31024038	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:31024037_31024038GG>AA	uc002wxs.2	+	12	3948_3949	c.3522_3523GG>AA	c.(3520-3525)AAGGAG>AAAAAG	p.E1175K	ASXL1_uc010geb.2_Missense_Mutation_p.E1066K	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	1175					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						GGGCTTTGAAGGAGCCTCTTCT	0.535			F|N|Mis		MDS|CMML								24	32					0	0	0.115264	0	0
E2F1	1869	broad.mit.edu	37	20	32267568	32267568	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:32267568G>A	uc002wzu.3	-	3	705	c.565C>T	c.(565-567)CAG>TAG	p.Q189*		NM_005225	NP_005216	Q01094	E2F1_HUMAN	E2F transcription factor 1	189	DEF box.|Potential.				apoptosis|cell proliferation|G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|mRNA stabilization|negative regulation of transcription involved in G1/S phase of mitotic cell cycle|positive regulation of fibroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle	mitochondrion|Rb-E2F complex	sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding				0						TACAGCCACTGGATGTGGTTC	0.577													31	39					0	0	0.080422	0	0
EPB41L1	2036	broad.mit.edu	37	20	34778562	34778562	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:34778562C>T	uc002xfb.2	+	11	1314	c.1143C>T	c.(1141-1143)CCC>CCT	p.P381P	EPB41L1_uc002xeu.2_Silent_p.P319P|EPB41L1_uc010zvo.1_Silent_p.P381P|EPB41L1_uc002xev.2_Silent_p.P381P|EPB41L1_uc002xew.2_Silent_p.P284P|EPB41L1_uc002xex.2_Silent_p.P350P|EPB41L1_uc002xey.2_Silent_p.P308P|EPB41L1_uc002xez.2_Silent_p.P319P	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	381					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					CCCCTGAGCCCCCACCCAAGG	0.642													20	30					0	0	0.069288	0	0
SLA2	84174	broad.mit.edu	37	20	35269708	35269709	+	Silent	DNP	GA	AC	AC			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:35269708_35269709GA>AC	uc002xfv.2	-	2	392_393	c.30_31TC>GT	c.(28-33)TCTCTG>TCGTTG	p.10_11SL>SL	SLA2_uc002xfu.2_Silent_p.10_11SL>SL	NM_032214	NP_115590	Q9H6Q3	SLAP2_HUMAN	Src-like-adaptor 2 isoform a	10_11					antigen receptor-mediated signaling pathway|B cell mediated immunity|intracellular receptor mediated signaling pathway|negative regulation of B cell activation|negative regulation of calcium-mediated signaling|negative regulation of transcription from RNA polymerase II promoter|T cell activation	cytoplasmic membrane-bounded vesicle|endosome membrane|plasma membrane	protein N-terminus binding|SH3/SH2 adaptor activity				0	Breast(12;0.114)	Myeloproliferative disorder(115;0.00878)				GGGCTTGGCAGAGATTTTCTTC	0.55													28	43					0	0	0.115264	0	0
CTNNBL1	56259	broad.mit.edu	37	20	36407653	36407653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:36407653C>T	uc010zvw.1	+	11	1038	c.947C>T	c.(946-948)TCC>TTC	p.S316F	CTNNBL1_uc002xhh.2_Missense_Mutation_p.S129F|CTNNBL1_uc002xhi.2_RNA|CTNNBL1_uc002xhj.2_Missense_Mutation_p.S64F	NM_030877	NP_110517	Q8WYA6	CTBL1_HUMAN	beta catenin-like 1	316					apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)				CTGTTTGATTCCCTCTGCTCC	0.478													24	31					0	0	0.083992	0	0
PTPRT	11122	broad.mit.edu	37	20	40790139	40790139	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:40790139G>A	uc002xkg.2	-	17	2719	c.2535C>T	c.(2533-2535)ATC>ATT	p.I845I	PTPRT_uc010ggj.2_Silent_p.I864I|PTPRT_uc010ggi.2_Silent_p.I48I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	845	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GATGAGTCTGGATCGTGAGGG	0.587													28	36					0	0	0.144211	0	0
GTSF1L	149699	broad.mit.edu	37	20	42354942	42354942	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:42354942C>T	uc002xld.2	-	1	701	c.393G>A	c.(391-393)ACG>ACA	p.T131T	GTSF1L_uc002xlc.2_Silent_p.T106T	NM_176791	NP_789761	Q9H1H1	GTSFL_HUMAN	gametocyte specific factor 1-like isoform 1	131							metal ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CTGACTCTTTCGTGTCATTTT	0.413													38	42					0	0	0.092188	0	0
SLC12A5	57468	broad.mit.edu	37	20	44665398	44665398	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:44665398T>C	uc010zxl.1	+	5	590	c.514T>C	c.(514-516)TCC>CCC	p.S172P	SLC12A5_uc002xra.2_Missense_Mutation_p.S149P|SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.S149P	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	172	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CACGGCCATCTCCATGAGTGC	0.602													30	44					0	0	0.059317	0	0
SLC2A10	81031	broad.mit.edu	37	20	45353731	45353731	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:45353731G>T	uc002xsl.2	+	2	153	c.56G>T	c.(55-57)GGC>GTC	p.G19V		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	19	Helical; Name=1; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TTGCTGGGTGGCCTGACCTTT	0.527													49	53					9.86064e-34	1.04919e-33	0.139131	1	0
ARFGEF2	10564	broad.mit.edu	37	20	47570183	47570183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:47570183C>T	uc002xtx.3	+	6	846	c.694C>T	c.(694-696)CGT>TGT	p.R232C		NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	232					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			AAAGTTCGTTCGTTTGAAGCA	0.473													30	47					0	0	0.125774	0	0
SALL4	57167	broad.mit.edu	37	20	50408550	50408550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:50408550C>T	uc002xwh.3	-	2	573	c.472G>A	c.(472-474)GAG>AAG	p.E158K	SALL4_uc010gii.2_Missense_Mutation_p.E158K|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	158					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AGGGCTGTCTCTGTCTTTAGG	0.567													165	124					0	0	0.139131	0	0
BCAS1	8537	broad.mit.edu	37	20	52645101	52645101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:52645101G>A	uc002xws.2	-	4	891	c.553C>T	c.(553-555)CCC>TCC	p.P185S	BCAS1_uc010zzb.1_Missense_Mutation_p.P88S|BCAS1_uc010gim.2_Missense_Mutation_p.P88S|BCAS1_uc002xwt.2_Missense_Mutation_p.P185S|BCAS1_uc010gil.1_Missense_Mutation_p.P185S|BCAS1_uc010zzc.1_Missense_Mutation_p.P88S	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	185						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			GGCTTGGAGGGAGCTTCTCCT	0.592													87	63					0	0	0.139131	0	0
CASS4	57091	broad.mit.edu	37	20	55027196	55027196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:55027196C>T	uc002xxp.2	+	6	1189	c.964C>T	c.(964-966)CCT>TCT	p.P322S	CASS4_uc002xxq.3_Missense_Mutation_p.P322S|CASS4_uc002xxr.2_Missense_Mutation_p.P322S|CASS4_uc010zze.1_Missense_Mutation_p.P268S|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	322					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AGGCACATTTCCTTTGGATGA	0.448													30	83					0	0	0.045705	0	0
PCK1	5105	broad.mit.edu	37	20	56136663	56136663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:56136663C>T	uc002xyn.3	+	2	359	c.196C>T	c.(196-198)CTC>TTC	p.L66F	PCK1_uc010zzm.1_5'UTR	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	66					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			AGAGGGCATCCTCAGGCGGCT	0.612													68	52					0	0	0.139131	0	0
RAB22A	57403	broad.mit.edu	37	20	56934664	56934664	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:56934664C>T	uc002xyz.2	+	7	752	c.490C>T	c.(490-492)CGA>TGA	p.R164*		NM_020673	NP_065724	Q9UL26	RB22A_HUMAN	RAS-related protein RAB-22A	164					endocytosis|endosome organization|protein transport|small GTPase mediated signal transduction	early endosome|endosome membrane|plasma membrane	GTP binding|GTPase activity|protein binding				0	all_epithelial(3;5.09e-14)|Lung NSC(12;0.000122)|all_lung(29;0.00042)		BRCA - Breast invasive adenocarcinoma(13;6.2e-12)|Epithelial(14;4.73e-08)|all cancers(14;4.83e-07)			TGGTTTAGGTCGAAGAATTCC	0.468													28	21					0	0	0.134883	0	0
HRH3	11255	broad.mit.edu	37	20	60791346	60791346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:60791346G>A	uc002ycf.2	-	3	1351	c.1054C>T	c.(1054-1056)CGG>TGG	p.R352W	HRH3_uc002ycg.2_Intron|HRH3_uc002ych.2_Intron|HRH3_uc002yci.2_Missense_Mutation_p.R352W	NM_007232	NP_009163	Q9Y5N1	HRH3_HUMAN	histamine receptor H3	352	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|neurotransmitter secretion	integral to plasma membrane	histamine receptor activity				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;7.08e-07)		Histamine Phosphate(DB00667)	TTCCTGTCCCGAGACAGCCGA	0.632													10	15					0	0	0.080935	0	0
LAMA5	3911	broad.mit.edu	37	20	60900498	60900498	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:60900498C>T	uc002ycq.2	-	41	5470	c.5403G>A	c.(5401-5403)CAG>CAA	p.Q1801Q		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1801	Laminin IV type A.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCGAGGAGATCTGTGAGAAGA	0.662													17	20					0	0	0.043863	0	0
LAMA5	3911	broad.mit.edu	37	20	60910129	60910129	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:60910129G>A	uc002ycq.2	-	20	2497	c.2430C>T	c.(2428-2430)TCC>TCT	p.S810S		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	810	Laminin EGF-like 10.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CATCCTTGCAGGACGCGCAGG	0.667													22	31					0	0	0.083992	0	0
PRIC285	85441	broad.mit.edu	37	20	62202103	62202103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr20:62202103C>T	uc002yfm.2	-	3	1289	c.397G>A	c.(397-399)GGG>AGG	p.G133R	PRIC285_uc002yfl.1_5'Flank|PRIC285_uc002yfn.2_Missense_Mutation_p.G133R	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	133					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GGCACCAGCCCGTCCTGCCAG	0.706													10	8					0	0	0.038395	0	0
TPTE	7179	broad.mit.edu	37	21	10914431	10914431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:10914431C>T	uc002yip.1	-	21	1656	c.1288G>A	c.(1288-1290)GAT>AAT	p.D430N	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.D412N|TPTE_uc002yir.1_Missense_Mutation_p.D392N|TPTE_uc010gkv.1_Missense_Mutation_p.D292N	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	430	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATTTTTAGATCACGTACATAA	0.313													5	30					0	0	0.029380	0	0
LIPI	149998	broad.mit.edu	37	21	15561684	15561684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:15561684C>T	uc002yjm.2	-	2	176	c.166G>A	c.(166-168)GAT>AAT	p.D56N	LIPI_uc010gkw.1_5'UTR	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	35					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		ATAAATAAATCTCTGAAGGAA	0.353													35	41					0	0	0.069456	0	0
CXADR	1525	broad.mit.edu	37	21	18937815	18937815	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:18937815C>T	uc002yki.2	+	7	1021	c.903C>T	c.(901-903)TCC>TCT	p.S301S	CXADR_uc002ykh.1_Missense_Mutation_p.P214L|CXADR_uc010gld.1_Missense_Mutation_p.P162L|CXADR_uc010gle.1_3'UTR|CXADR_uc002ykj.1_Silent_p.S274S	NM_001338	NP_001329	P78310	CXAR_HUMAN	coxsackie virus and adenovirus receptor	301	Cytoplasmic (Potential).				blood coagulation|cell adhesion|interspecies interaction between organisms|leukocyte migration|regulation of immune response	adherens junction|basolateral plasma membrane|extracellular region|integral to plasma membrane|nucleus|tight junction	receptor activity			ovary(1)	1				Epithelial(23;0.000206)|all cancers(11;0.000302)|OV - Ovarian serous cystadenocarcinoma(11;0.0194)|Lung(58;0.0233)|COAD - Colon adenocarcinoma(22;0.0389)|Colorectal(24;0.0483)|LUSC - Lung squamous cell carcinoma(23;0.0782)		ATCATTCATCCCTGGGGTCCA	0.488													29	41					0	0	0.116897	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28337755	28337755	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:28337755A>C	uc002ymg.2	-	1	1685	c.956T>G	c.(955-957)GTG>GGG	p.V319G		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	319	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						GCCTAGCACCACCACCTTCAC	0.577													36	51					0	0	0.086207	0	0
CLDN17	26285	broad.mit.edu	37	21	31538540	31538540	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:31538540G>A	uc011acv.1	-	1	396	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NM_012131	NP_036263	P56750	CLD17_HUMAN	claudin 17	132	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	Golgi apparatus|integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(2)	2						GAATCAGAACGAAGATGCCCG	0.512													42	66					0	0	0.111260	0	0
DSCAM	1826	broad.mit.edu	37	21	41648186	41648186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:41648186G>A	uc002yyq.1	-	11	2646	c.2194C>T	c.(2194-2196)CCC>TCC	p.P732S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	732	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGGAACTGGGGAACCCCAGCA	0.478													23	21					0	0	0.108266	0	0
DSCAM	1826	broad.mit.edu	37	21	41741060	41741060	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:41741060C>T	uc002yyq.1	-	4	1073	c.621G>A	c.(619-621)ACG>ACA	p.T207T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	207	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGCTCTGCCTCGTCTCTCCGG	0.448													18	38					0	0	0.049695	0	0
ICOSLG	23308	broad.mit.edu	37	21	45655426	45655426	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:45655426G>A	uc002zee.2	-	4	560	c.426C>T	c.(424-426)GTC>GTT	p.V142V	ICOSLG_uc011afc.1_Silent_p.V52V|ICOSLG_uc002zef.2_Silent_p.V25V|ICOSLG_uc010gpp.1_Silent_p.V142V	NM_015259	NP_056074	O75144	ICOSL_HUMAN	inducible T-cell co-stimulator ligand precursor	142	Extracellular (Potential).|Ig-like C2-type.				B cell activation|defense response|hyperosmotic response|positive regulation of activated T cell proliferation|signal transduction|T cell activation|T cell costimulation		receptor binding				0				Colorectal(79;0.0163)|READ - Rectum adenocarcinoma(84;0.0772)		GGGCGCTGACGACGGGCACGC	0.587													34	59					0	0	0.080422	0	0
AIRE	326	broad.mit.edu	37	21	45711083	45711083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:45711083G>A	uc002zei.2	+	8	1112	c.985G>A	c.(985-987)GAG>AAG	p.E329K	AIRE_uc010gpq.2_RNA|AIRE_uc002zej.2_Missense_Mutation_p.E132K|AIRE_uc010gpr.2_Missense_Mutation_p.E132K	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	329	PHD-type 1.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		TCCGCTCCGGGAGATCCCCAG	0.697									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				10	15					0	0	0.105934	0	0
ITGB2	3689	broad.mit.edu	37	21	46326910	46326910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:46326910C>T	uc002zgd.2	-	3	292	c.248G>A	c.(247-249)AGC>AAC	p.S83N	ITGB2_uc002zge.2_Missense_Mutation_p.S83N|ITGB2_uc002zgf.3_Missense_Mutation_p.S83N|ITGB2_uc011afl.1_Missense_Mutation_p.S5N|ITGB2_uc010gpw.2_Missense_Mutation_p.S83N|ITGB2_uc002zgg.2_Missense_Mutation_p.S83N	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	83	Extracellular (Potential).				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	TTCAGCGAGGCTTGTGGGGTC	0.612													36	53					0	0	0.074837	0	0
COL6A2	1292	broad.mit.edu	37	21	47545378	47545378	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:47545378G>A	uc002zia.1	+	25	1899	c.1817_splice	c.e25-1	p.D606_splice	COL6A2_uc002zhy.1_Splice_Site_p.D606_splice|COL6A2_uc002zhz.1_Splice_Site_p.D606_splice|COL6A2_uc002zib.1_Splice_Site_p.D12_splice|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor						axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CACCCCCCCAGACTGTGAGAA	0.617													22	33					0	0	0.062417	0	0
PCNT	5116	broad.mit.edu	37	21	47831873	47831873	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:47831873C>T	uc002zji.3	+	28	5993	c.5886C>T	c.(5884-5886)CCC>CCT	p.P1962P	PCNT_uc002zjj.2_Silent_p.P1844P	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1962					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					CACGGGTGCCCGGGGCCCACC	0.697													7	7					0	0	0.038147	0	0
USP18	11274	broad.mit.edu	37	22	18644647	18644647	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:18644647G>A	uc002zny.2	+	4	683	c.345G>A	c.(343-345)CAG>CAA	p.Q115Q		NM_017414	NP_059110	Q9UMW8	UBP18_HUMAN	ubiquitin specific protease 18	115					regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway|ubiquitin-dependent protein catabolic process	cytosol|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			breast(1)	1						ACAGCCGGCAGAAAGCAGTGC	0.617													13	23					0	0	0.105934	0	0
ARVCF	421	broad.mit.edu	37	22	19965018	19965018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:19965018G>A	uc002zqz.2	-	9	2061	c.1790C>T	c.(1789-1791)CCC>CTC	p.P597L	ARVCF_uc002zqy.2_Missense_Mutation_p.P119L	NM_001670	NP_001661	O00192	ARVC_HUMAN	armadillo repeat protein	597	ARM 6.				cell adhesion|multicellular organismal development		protein binding			liver(1)	1	Colorectal(54;0.0993)					CAGGGGCCCGGGCTCGGCCTC	0.677													30	46					0	0	0.144211	0	0
CRYBB2	1415	broad.mit.edu	37	22	25623912	25623912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:25623912G>A	uc003abp.1	+	4	314	c.266G>A	c.(265-267)CGA>CAA	p.R89Q		NM_000496	NP_000487	P43320	CRBB2_HUMAN	crystallin, beta B2	89	Beta/gamma crystallin 'Greek key' 2.				response to stimulus|visual perception		structural constituent of eye lens				0						ACCAGCAGCCGAAGGACGGAC	0.592													32	45					0	0	0.080422	0	0
CRYBB2	1415	broad.mit.edu	37	22	25625498	25625498	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:25625498C>T	uc003abp.1	+	5	450	c.402C>T	c.(400-402)GCC>GCT	p.A134A		NM_000496	NP_000487	P43320	CRBB2_HUMAN	crystallin, beta B2	134	Beta/gamma crystallin 'Greek key' 3.				response to stimulus|visual perception		structural constituent of eye lens				0						GCTTCCACGCCCATGGCTACC	0.493													16	15					0	0	0.055883	0	0
ZNRF3	84133	broad.mit.edu	37	22	29445668	29445668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:29445668C>T	uc003aeg.2	+	8	1364	c.1199C>T	c.(1198-1200)CCT>CTT	p.P400L	ZNRF3_uc003aeh.1_Missense_Mutation_p.P400L	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	500	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						CGTGCCTTTCCTCCGAGCGGC	0.687													13	15					0	0	0.119110	0	0
SEC14L3	266629	broad.mit.edu	37	22	30860826	30860826	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:30860826C>T	uc003ahy.2	-	8	734	c.645G>A	c.(643-645)AGG>AGA	p.R215R	SEC14L3_uc003ahz.2_Silent_p.R138R|SEC14L3_uc003aia.2_Silent_p.R156R|SEC14L3_uc003aib.2_Silent_p.R156R	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	215	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	CAATAATTTTCCTGCGAGTGT	0.458													63	77					0	0	0.139131	0	0
SEC14L4	284904	broad.mit.edu	37	22	30887849	30887849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:30887849C>T	uc003aid.2	-	10	983	c.883G>A	c.(883-885)GAG>AAG	p.E295K	SEC14L4_uc011akz.1_Missense_Mutation_p.E295K|SEC14L4_uc003aie.2_Missense_Mutation_p.E280K|SEC14L4_uc003aif.2_Missense_Mutation_p.E241K	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	295	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	AACAGGATCTCGTTCTCCACC	0.652													5	6					0	0	0.021553	0	0
SEC14L4	284904	broad.mit.edu	37	22	30890867	30890867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:30890867C>T	uc003aid.2	-	6	605	c.505G>A	c.(505-507)GAG>AAG	p.E169K	SEC14L4_uc011akz.1_Missense_Mutation_p.E169K|SEC14L4_uc003aie.2_Missense_Mutation_p.E154K|SEC14L4_uc003aif.2_Missense_Mutation_p.E115K	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	169	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	TGGTAGACCTCCACAGCTGGC	0.582													30	41					0	0	0.059317	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37491976	37491976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:37491976C>T	uc003aqs.1	-	5	700	c.586G>A	c.(586-588)GAA>AAA	p.E196K	TMPRSS6_uc003aqt.1_Missense_Mutation_p.E187K|TMPRSS6_uc003aqu.2_Missense_Mutation_p.E187K	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	196	Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						GGGTCCACTTCGTACTCGGCC	0.642													30	29					0	0	0.059317	0	0
GCAT	23464	broad.mit.edu	37	22	38209569	38209569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:38209569C>T	uc003atz.2	+	4	549	c.529C>T	c.(529-531)CGC>TGC	p.R177C	GCAT_uc003aua.1_Missense_Mutation_p.R203C	NM_014291	NP_055106	O75600	KBL_HUMAN	glycine C-acetyltransferase precursor	177					biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups				0	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	GTACCGCTATCGCCACCTGGA	0.627													16	23					0	0	0.076483	0	0
PKDREJ	10343	broad.mit.edu	37	22	46655116	46655116	+	Silent	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:46655116T>C	uc003bhh.2	-	1	4104	c.4104A>G	c.(4102-4104)AAA>AAG	p.K1368K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1368	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		ACATGTGGTTTTTCCGGAGAT	0.388													36	45					0	0	0.069456	0	0
CELSR1	9620	broad.mit.edu	37	22	46930583	46930583	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:46930583G>A	uc003bhw.1	-	1	2485	c.2485C>T	c.(2485-2487)CAG>TAG	p.Q829*		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	829	Extracellular (Potential).|Cadherin 6.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ACGGGGTCCTGAATCACGTAG	0.577													29	36					0	0	0.125774	0	0
ZBED4	9889	broad.mit.edu	37	22	50280697	50280697	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:50280697C>T	uc003bix.2	+	2	3857	c.3387C>T	c.(3385-3387)GTC>GTT	p.V1129V		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	1129						cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		CAAGCATCGTCCCTTCAGAAA	0.532													12	32					0	0	0.146539	0	0
TTLL8	164714	broad.mit.edu	37	22	50479665	50479665	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:50479665A>C	uc011ark.1	-	8	872	c.872T>G	c.(871-873)ATC>AGC	p.I291S		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		AACCTTCTGGATTTTGAAGAT	0.552													71	86					0	0	0.139131	0	0
MOV10L1	54456	broad.mit.edu	37	22	50563979	50563979	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:50563979G>A	uc003bjj.2	+	11	1811	c.1728G>A	c.(1726-1728)GGG>GGA	p.G576G	MOV10L1_uc003bjk.3_Silent_p.G576G|MOV10L1_uc011arp.1_Silent_p.G556G|MOV10L1_uc011arq.1_Silent_p.G337G|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	576					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		TGGCCGAAGGGAGGCCTTCTC	0.468													23	40					0	0	0.083992	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51048686	51048686	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr22:51048686T>G	uc003bmx.2	+	12	2467	c.2350T>G	c.(2350-2352)TGC>GGC	p.C784G	MAPK8IP2_uc003bmy.2_Missense_Mutation_p.C757G|MAPK8IP2_uc011asc.1_Missense_Mutation_p.C138G	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	784	PID.				behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCGCTTCGCCTGCCACGTCTT	0.647													5	8					0	0	0.021553	0	0
CNTN6	27255	broad.mit.edu	37	3	1414564	1414564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:1414564C>T	uc003boz.2	+	14	1978	c.1711C>T	c.(1711-1713)CAT>TAT	p.H571Y	CNTN6_uc011asj.1_Missense_Mutation_p.H499Y|CNTN6_uc003bpa.2_Missense_Mutation_p.H571Y	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	571	Ig-like C2-type 6.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TCAGTTACATCATTCAGGAAA	0.368													41	53					0	0	0.124865	0	0
C3orf24	115795	broad.mit.edu	37	3	10146260	10146260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:10146260C>T	uc003buz.2	-	2	424	c.199G>A	c.(199-201)GGA>AGA	p.G67R	C3orf24_uc003bva.1_Missense_Mutation_p.G67R	NM_173472	NP_775743	Q96PS1	CC024_HUMAN	hypothetical protein LOC115795	67											0				OV - Ovarian serous cystadenocarcinoma(96;0.196)		GGACTCACTCCAGATTCCAGG	0.562													17	22					0	0	0.033300	0	0
SLC6A1	6529	broad.mit.edu	37	3	11059584	11059584	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:11059584C>T	uc010hdq.2	+	4	705	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	98	Helical; Name=2; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	TCCCACTCTTCCTGCTGGAGT	0.567													47	79					0	0	0.139131	0	0
HRH1	3269	broad.mit.edu	37	3	11300881	11300882	+	Missense_Mutation	DNP	GG	AA	AA	rs61738990	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:11300881_11300882GG>AA	uc010hdr.2	+	2	500_501	c.158_159GG>AA	c.(157-159)CGG>CAA	p.R53Q	HRH1_uc010hds.2_Missense_Mutation_p.R53Q|HRH1_uc010hdt.2_Missense_Mutation_p.R53Q|HRH1_uc003bwb.3_Missense_Mutation_p.R53Q	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	53	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	TATGCCGTACGGAGTGAGCGGA	0.594													8	29					0	0	0.115264	0	0
RAF1	5894	broad.mit.edu	37	3	12660032	12660032	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:12660032C>T	uc003bxf.3	-	2	604	c.189G>A	c.(187-189)CCG>CCA	p.P63P	RAF1_uc011auu.1_Missense_Mutation_p.R19Q	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	63	RBD.				activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	TTTGCTTGTTCGGCAAGAAAA	0.418			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				31	61					0	0	0.080422	0	0
CAND2	23066	broad.mit.edu	37	3	12859147	12859147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:12859147G>A	uc003bxk.2	+	10	2765	c.2716G>A	c.(2716-2718)GCT>ACT	p.A906T	CAND2_uc003bxj.2_Missense_Mutation_p.A813T	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	906	HEAT 19.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						GCAGATCGAGGCTGAGCCCCG	0.672													40	49					0	0	0.098360	0	0
MYD88	4615	broad.mit.edu	37	3	38181467	38181467	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:38181467C>T	uc003chx.2	+	2	664	c.480C>T	c.(478-480)ATC>ATT	p.I160I	ACAA1_uc003cht.2_5'Flank|ACAA1_uc003chu.2_5'Flank|ACAA1_uc010hgy.2_5'Flank|ACAA1_uc010hgz.2_5'Flank|ACAA1_uc003chv.2_5'Flank|MYD88_uc011ayh.1_Silent_p.I160I|MYD88_uc011ayi.1_Silent_p.I160I|MYD88_uc011ayj.1_Silent_p.I160I|MYD88_uc011ayk.1_Intron|MYD88_uc011ayl.1_Intron	NM_002468	NP_002459	Q99836	MYD88_HUMAN	myeloid differentiation primary response gene	147	Intermediate domain (By similarity).				3'-UTR-mediated mRNA stabilization|anti-apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-17 production|positive regulation of interleukin-23 production|positive regulation of interleukin-6 production|regulation of inflammatory response|response to interleukin-1|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|intrinsic to membrane|plasma membrane	death receptor binding|TIR domain binding|transmembrane receptor activity			haematopoietic_and_lymphoid_tissue(93)|breast(1)	94				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TGGCGGGCATCACCACACTTG	0.532			Mis 		ABC-DLBCL								15	19					0	0	0.132662	0	0
TTC21A	199223	broad.mit.edu	37	3	39162558	39162558	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:39162558C>G	uc003cjc.2	+	9	1172	c.995C>G	c.(994-996)TCG>TGG	p.S332W	TTC21A_uc003cje.2_Missense_Mutation_p.S332W|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Missense_Mutation_p.S283W	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	332							binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		GCCACCCCCTCGTATGTCCAT	0.512													26	35					0	0	0.116897	0	0
TRAK1	22906	broad.mit.edu	37	3	42234641	42234641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:42234641G>A	uc003cky.2	+	8	1060	c.844G>A	c.(844-846)GAG>AAG	p.E282K	TRAK1_uc011azh.1_Missense_Mutation_p.E282K|TRAK1_uc011azi.1_Missense_Mutation_p.E282K|TRAK1_uc003ckz.3_Missense_Mutation_p.E208K|TRAK1_uc011azj.1_Missense_Mutation_p.E208K|TRAK1_uc003cla.2_Missense_Mutation_p.E224K	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	282	Potential.|HAP1 N-terminal.				endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						CCGCCAGCAAGAGGAGATCAC	0.468													37	52					0	0	0.080422	0	0
ARIH2	10425	broad.mit.edu	37	3	49005998	49005998	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:49005998C>T	uc003cvb.2	+	7	882	c.570C>T	c.(568-570)CTC>CTT	p.L190L	ARIH2_uc003cvc.2_Silent_p.L190L|ARIH2_uc003cvf.2_Silent_p.L108L|ARIH2_uc010hkl.2_Silent_p.L190L	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	190					developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		ACTGTCCACTCCGTACACCAG	0.378													53	87					0	0	0.139131	0	0
USP19	10869	broad.mit.edu	37	3	49155249	49155249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:49155249G>A	uc003cwd.1	-	4	474	c.313C>T	c.(313-315)CCT>TCT	p.P105S	USP19_uc003cwa.2_Intron|USP19_uc003cvz.3_Missense_Mutation_p.P105S|USP19_uc011bcg.1_Missense_Mutation_p.P105S|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_5'Flank|USP19_uc011bch.1_Missense_Mutation_p.P105S|USP19_uc011bci.1_Intron	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	105	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGATCATGAGGGTCTTCACAA	0.527													8	21					0	0	0.038147	0	0
TCTA	6988	broad.mit.edu	37	3	49449940	49449940	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:49449940G>A	uc003cwv.3	+	1	302	c.81G>A	c.(79-81)CGG>CGA	p.R27R	RHOA_uc010hku.2_5'Flank|RHOA_uc003cwu.2_5'Flank	NM_022171	NP_071503	P57738	TCTA_HUMAN	T-cell leukemia translocation altered	27	Cytoplasmic (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		AGTTCTTGCGGGAGTGGGAGG	0.677													23	50					0	0	0.069288	0	0
ERC2	26059	broad.mit.edu	37	3	56330433	56330433	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:56330433C>A	uc003dhr.1	-	3	944	c.688G>T	c.(688-690)GAT>TAT	p.D230Y		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	230	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CGCAGCTCATCTTGAAGGGCC	0.522													18	33					5.3912e-06	5.69023e-06	0.038395	1	0
PDE12	201626	broad.mit.edu	37	3	57543412	57543412	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:57543412C>T	uc003diw.3	+	1	1432	c.1306C>T	c.(1306-1308)CAG>TAG	p.Q436*	PDE12_uc003div.2_Nonsense_Mutation_p.Q436*	NM_177966	NP_808881	Q6L8Q7	PDE12_HUMAN	phosphodiesterase 12	436							hydrolase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.011)|Kidney(284;0.0127)		TTCTGTTCTTCAGGTAAAGTA	0.512													24	27					0	0	0.083992	0	0
FLNB	2317	broad.mit.edu	37	3	58109178	58109178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:58109178G>A	uc003djj.2	+	21	3650	c.3485G>A	c.(3484-3486)GGA>GAA	p.G1162E	FLNB_uc010hne.2_Missense_Mutation_p.G1162E|FLNB_uc003djk.2_Missense_Mutation_p.G1162E|FLNB_uc010hnf.2_Missense_Mutation_p.G1162E|FLNB_uc003djl.2_Missense_Mutation_p.G993E|FLNB_uc003djm.2_Missense_Mutation_p.G993E	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1162	Interaction with FBLP1.|Filamin 10.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TCGGAAGCGGGACCGGGGGCC	0.607													36	56					0	0	0.092188	0	0
KCTD6	200845	broad.mit.edu	37	3	58486826	58486826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:58486826G>A	uc003dkj.3	+	3	298	c.181G>A	c.(181-183)GAT>AAT	p.D61N	KCTD6_uc003dki.3_Missense_Mutation_p.D61N|KCTD6_uc003dkk.3_Missense_Mutation_p.D61N	NM_001128214	NP_001121686	Q8NC69	KCTD6_HUMAN	potassium channel tetramerisation domain	61	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000177)|Kidney(10;0.00229)|KIRC - Kidney renal clear cell carcinoma(10;0.00258)|OV - Ovarian serous cystadenocarcinoma(275;0.148)		TATTGATCGAGATGGACCTCT	0.458													23	41					0	0	0.062417	0	0
PTPRG	5793	broad.mit.edu	37	3	62177286	62177286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:62177286G>A	uc003dlb.2	+	9	1896	c.1177G>A	c.(1177-1179)GAG>AAG	p.E393K	PTPRG_uc003dlc.2_Missense_Mutation_p.E393K	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	393	Fibronectin type-III.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		GAATGAGGACGAGAAGGAGAA	0.542													19	26					0	0	0.062417	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64619277	64619277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:64619277C>T	uc003dmg.2	-	14	2078	c.2046G>A	c.(2044-2046)ATG>ATA	p.M682I	ADAMTS9_uc011bfo.1_Missense_Mutation_p.M654I|ADAMTS9_uc003dmh.1_Missense_Mutation_p.M511I|ADAMTS9_uc003dmk.1_Missense_Mutation_p.M682I	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	682	Cys-rich.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		ACCGGTCCTTCATCAGAACTA	0.512													187	250					0	0	0.139131	0	0
SHQ1	55164	broad.mit.edu	37	3	72799687	72799688	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:72799687_72799688GG>AA	uc003dpf.2	-	11	1588_1589	c.1481_1482CC>TT	c.(1480-1482)CCC>CTT	p.P494L	SHQ1_uc010hod.2_Missense_Mutation_p.P405L	NM_018130	NP_060600	Q6PI26	SHQ1_HUMAN	SHQ1 homolog	494					ribonucleoprotein complex assembly	cytosol|nucleoplasm	protein binding			ovary(2)|large_intestine(1)	3		Prostate(10;0.00482)|Lung NSC(201;0.0339)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;9.68e-05)|Epithelial(33;0.000563)|LUSC - Lung squamous cell carcinoma(21;0.00229)|Lung(16;0.00688)|KIRC - Kidney renal clear cell carcinoma(39;0.018)|Kidney(39;0.0213)		CTTCAAGAAAGGGACCTTGCAA	0.475													28	62					0	0	0.115264	0	0
ROBO1	6091	broad.mit.edu	37	3	79639029	79639029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:79639029C>T	uc003dqe.2	-	2	241	c.33G>A	c.(31-33)ATG>ATA	p.M11I		NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	11					activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GGAGTGATATCATGACCAAAA	0.408													47	65					0	0	0.139131	0	0
PROS1	5627	broad.mit.edu	37	3	93598050	93598050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:93598050G>A	uc003drb.3	-	13	1942	c.1601C>T	c.(1600-1602)CCC>CTC	p.P534L	PROS1_uc010hoo.2_Missense_Mutation_p.P403L|PROS1_uc003dqz.3_Missense_Mutation_p.P403L	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	534	Laminin G-like 2.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	CACAGCAAAGGGCACTGTGTT	0.368													22	35					0	0	0.062417	0	0
EPHA6	285220	broad.mit.edu	37	3	96706498	96706498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:96706498C>T	uc010how.1	+	3	818	c.775C>T	c.(775-777)CGC>TGC	p.R259C	EPHA6_uc003drp.1_Missense_Mutation_p.R259C	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	164	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TTTGGGTGATCGCATCCTCAA	0.443													113	148					0	0	0.139131	0	0
COL8A1	1295	broad.mit.edu	37	3	99513517	99513517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:99513517G>A	uc003dtg.1	+	5	1017	c.772G>A	c.(772-774)GGG>AGG	p.G258R	COL8A1_uc003dth.1_Missense_Mutation_p.G258R|COL8A1_uc003dti.1_Missense_Mutation_p.G259R	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	258	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GGGGCCTCCAGGGATGCACGG	0.662													40	68					0	0	0.111260	0	0
SENP7	57337	broad.mit.edu	37	3	101058952	101058952	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:101058952C>G	uc003dut.2	-	16	2455	c.2344G>C	c.(2344-2346)GAT>CAT	p.D782H	SENP7_uc003duu.2_Missense_Mutation_p.D717H|SENP7_uc003duv.2_Missense_Mutation_p.D749H|SENP7_uc003duw.2_Missense_Mutation_p.D716H|SENP7_uc003dux.2_Missense_Mutation_p.D618H	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	782	Protease.				proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						AGGTAAAAATCAATGATTACA	0.299													8	12					0	0	0.058154	0	0
IFT57	55081	broad.mit.edu	37	3	107885814	107885814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:107885814G>A	uc003dwx.3	-	8	1116	c.868C>T	c.(868-870)CAT>TAT	p.H290Y		NM_018010	NP_060480	Q9NWB7	IFT57_HUMAN	estrogen-related receptor beta like 1	290					activation of caspase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cilium|microtubule basal body	DNA binding|protein binding			ovary(1)|skin(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(3;0.0428)|Epithelial(53;0.246)			ATTTCATTATGGAGTTTGTCC	0.338													12	21					0	0	0.119110	0	0
TRAT1	50852	broad.mit.edu	37	3	108549601	108549601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:108549601C>T	uc003dxi.1	+	2	236	c.92C>T	c.(91-93)TCC>TTC	p.S31F	TRAT1_uc010hpx.1_Intron	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	31	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						TTCAATATTTCCCACTATGTG	0.408													47	64					0	0	0.139131	0	0
TRAT1	50852	broad.mit.edu	37	3	108568015	108568015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:108568015C>T	uc003dxi.1	+	5	361	c.217C>T	c.(217-219)CCA>TCA	p.P73S	TRAT1_uc010hpx.1_Missense_Mutation_p.P36S	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	73	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						TTCCCAAGAACCAATGGATGA	0.328													21	15					0	0	0.049695	0	0
MORC1	27136	broad.mit.edu	37	3	108690227	108690227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:108690227G>A	uc003dxl.2	-	25	2587	c.2500C>T	c.(2500-2502)CCT>TCT	p.P834S	MORC1_uc011bhn.1_Missense_Mutation_p.P813S	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	834					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TGATGCTCAGGAAAAAAATAC	0.403													20	37					0	0	0.055883	0	0
MORC1	27136	broad.mit.edu	37	3	108818307	108818307	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:108818307G>A	uc003dxl.2	-	6	408	c.321C>T	c.(319-321)TCC>TCT	p.S107S	MORC1_uc011bhn.1_Silent_p.S107S	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	107					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CAATTCTCATGGACCCACTAT	0.353													16	18					0	0	0.132662	0	0
ZBED2	79413	broad.mit.edu	37	3	111312559	111312560	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:111312559_111312560CC>TT	uc003dxy.2	-	2	1374_1375	c.489_490GG>AA	c.(487-492)AGGGAA>AGAAAA	p.E164K	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	164							DNA binding|metal ion binding			skin(1)	1						ACTGCCCTTTCCCTCCTAAGCA	0.604													33	62					0	0	0.115264	0	0
SIDT1	54847	broad.mit.edu	37	3	113285282	113285282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:113285282G>A	uc003eak.2	+	2	889	c.238G>A	c.(238-240)GTG>ATG	p.V80M	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.V80M|SIDT1_uc011big.1_Translation_Start_Site	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	80	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						AGCCGTGAGGGTGTATGTGAA	0.403													28	49					0	0	0.045705	0	0
TIGIT	201633	broad.mit.edu	37	3	114014634	114014634	+	Missense_Mutation	SNP	G	A	A	rs146935299	by1000genomes	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:114014634G>A	uc003ebg.1	+	2	338	c.304G>A	c.(304-306)GAT>AAT	p.D102N		NM_173799	NP_776160	Q495A1	TIGIT_HUMAN	T cell immunoreceptor with Ig and ITIM domains	102	Extracellular (Potential).|Ig-like V-type.				negative regulation of interleukin-12 production|negative regulation of T cell activation|positive regulation of interleukin-10 production	cell surface|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)	1						GACCGTGAACGATACAGGGGA	0.567													18	43					0	0	0.062417	0	0
FSTL1	11167	broad.mit.edu	37	3	120121692	120121692	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:120121692G>A	uc003eds.2	-	9	943	c.768C>T	c.(766-768)GCC>GCT	p.A256A	FSTL1_uc011bjh.1_Silent_p.A221A	NM_007085	NP_009016	Q12841	FSTL1_HUMAN	follistatin-like 1 precursor	256	VWFC.				BMP signaling pathway	extracellular space	calcium ion binding|heparin binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.189)		AATTTCCACAGGCACAGACAC	0.512													32	62					0	0	0.059317	0	0
POLQ	10721	broad.mit.edu	37	3	121207613	121207613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:121207613G>A	uc003eee.3	-	16	4294	c.4165C>T	c.(4165-4167)CAT>TAT	p.H1389Y	POLQ_uc003eed.2_Missense_Mutation_p.H561Y	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1389					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		AGGTCCAAATGATCTATCTTA	0.428								DNA_polymerases_(catalytic_subunits)					22	32					0	0	0.062417	0	0
ARGFX	503582	broad.mit.edu	37	3	121289622	121289622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:121289622C>T	uc003eef.2	+	2	157	c.62C>T	c.(61-63)TCC>TTC	p.S21F		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	21						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		AGGAATTATTCCAACATGAAG	0.478													33	36					0	0	0.111260	0	0
GOLGB1	2804	broad.mit.edu	37	3	121416987	121416987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:121416987G>A	uc003eei.3	-	13	2494	c.2368C>T	c.(2368-2370)CAT>TAT	p.H790Y	GOLGB1_uc010hrc.2_Missense_Mutation_p.H795Y|GOLGB1_uc003eej.3_Missense_Mutation_p.H756Y|GOLGB1_uc011bjm.1_Missense_Mutation_p.H676Y|GOLGB1_uc010hrd.1_Missense_Mutation_p.H754Y	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	790	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		AGGTTGTCATGGGCAGTTTGG	0.408													57	57					0	0	0.139131	0	0
CCDC14	64770	broad.mit.edu	37	3	123634533	123634533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:123634533G>A	uc011bjx.1	-	13	2046	c.1955C>T	c.(1954-1956)TCC>TTC	p.S652F	CCDC14_uc003egv.3_Missense_Mutation_p.S293F|CCDC14_uc003egx.3_Missense_Mutation_p.S452F|CCDC14_uc010hrt.2_Missense_Mutation_p.S611F|CCDC14_uc003egy.3_Missense_Mutation_p.S452F|CCDC14_uc003egz.2_Intron	NM_022757	NP_073594	Q49A88	CCD14_HUMAN	coiled-coil domain containing 14	652						centrosome					0		Lung NSC(201;0.0371)|Prostate(884;0.0405)|Myeloproliferative disorder(1037;0.205)		Lung(219;0.00942)|GBM - Glioblastoma multiforme(114;0.159)		ACTAAGATCGGAGAGAAGCTT	0.383													44	79					0	0	0.139131	0	0
MUC13	56667	broad.mit.edu	37	3	124627080	124627080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:124627080G>A	uc003ehq.1	-	11	1474	c.1450C>T	c.(1450-1452)CCT>TCT	p.P484S		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	484	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane					0						CTGACCTTAGGAAAGACGCTC	0.488													24	28					0	0	0.091800	0	0
PLXND1	23129	broad.mit.edu	37	3	129284830	129284830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:129284830C>T	uc003emx.2	-	24	4322	c.4222G>A	c.(4222-4224)GAG>AAG	p.E1408K	PLXND1_uc011blb.1_Missense_Mutation_p.E76K	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1408	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						CTAATTCCCTCTTCCATGTTG	0.522													9	24					0	0	0.058154	0	0
PLS1	5357	broad.mit.edu	37	3	142403096	142403096	+	Silent	SNP	T	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:142403096T>G	uc010huv.2	+	8	906	c.747T>G	c.(745-747)GCT>GCG	p.A249A	PLS1_uc003euz.2_Silent_p.A249A|PLS1_uc003eva.2_Silent_p.A249A	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	249	Actin-binding 1.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						TGCCCTCAGCTCTGATTGCAT	0.413													5	61					0	0	0.029380	0	0
CLRN1	7401	broad.mit.edu	37	3	150690456	150690456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:150690456C>T	uc003eyk.1	-	1	331	c.40G>A	c.(40-42)GGA>AGA	p.G14R	CLRN1OS_uc011bny.1_Intron|CLRN1OS_uc003eyl.2_5'Flank	NM_174878	NP_777367	P58418	CLRN1_HUMAN	clarin 1 isoform a	14	Helical; (Potential).				equilibrioception|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			CTGAACACTCCGGCCATGCAA	0.502													26	36					0	0	0.099896	0	0
SUCNR1	56670	broad.mit.edu	37	3	151599155	151599155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:151599155C>T	uc003ezf.1	+	3	923	c.824C>T	c.(823-825)TCC>TTC	p.S275F		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	275	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	GTCATCAACTCCTTTTACATT	0.473													61	77					0	0	0.139131	0	0
SGEF	26084	broad.mit.edu	37	3	153840535	153840535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:153840535C>T	uc011bog.1	+	2	965	c.754C>T	c.(754-756)CCG>TCG	p.P252S	uc003ezu.1_5'Flank|SGEF_uc011boh.1_Missense_Mutation_p.P252S	NM_015595	NP_056410	Q96DR7	ARHGQ_HUMAN	Src homology 3 domain-containing guanine	252					regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			GCAGATCATTCCGAAGAGTCT	0.532													8	7					0	0	0.038147	0	0
OTOL1	131149	broad.mit.edu	37	3	161221358	161221358	+	Silent	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:161221358T>C	uc011bpb.1	+	4	1062	c.1062T>C	c.(1060-1062)CCT>CCC	p.P354P		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	354	C1q.					collagen					0						AGCCATTTCCTCCTCCTAACA	0.493													15	15					0	0	0.038395	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540495	169540495	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:169540495C>T	uc003fgb.2	+	1	786	c.786C>T	c.(784-786)ATC>ATT	p.I262I		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	262	LRR 11.										0						TGACGGAAATCGGGCTGAGCG	0.607													14	21					0	0	0.105934	0	0
KLHL24	54800	broad.mit.edu	37	3	183381313	183381313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:183381313C>T	uc003flv.2	+	4	1283	c.988C>T	c.(988-990)CCA>TCA	p.P330S	KLHL24_uc003flw.2_Missense_Mutation_p.P330S|KLHL24_uc003flx.2_Missense_Mutation_p.P330S	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	330	Kelch 1.					axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			ATTTAATCTTCCATACACTGA	0.398													24	41					0	0	0.144211	0	0
LIPH	200879	broad.mit.edu	37	3	185234907	185234907	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:185234907A>T	uc003fpm.2	-	7	1040	c.930T>A	c.(928-930)GAT>GAA	p.D310E	LIPH_uc010hyh.2_Missense_Mutation_p.D276E	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	310					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			TCATTGGAGGATCTTTCCCCC	0.383													167	264					0	0	0.139131	0	0
HRG	3273	broad.mit.edu	37	3	186390584	186390584	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:186390584G>A	uc003fqq.2	+	5	590	c.567G>A	c.(565-567)GGG>GGA	p.G189G		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	189	Cystatin 2.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		AGAGAGGAGGGGAAGGAACTG	0.413													20	19					0	0	0.055883	0	0
HRASLS	57110	broad.mit.edu	37	3	192973511	192973511	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:192973511C>T	uc003fta.2	+	2	477	c.72C>T	c.(70-72)TTC>TTT	p.F24F		NM_020386	NP_065119	Q9HDD0	HRSL1_HUMAN	HRAS-like suppressor	24											0	all_cancers(143;9.1e-09)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000159)		TCGAAGTGTTCCGTCCTGGCT	0.493													57	64					0	0	0.139131	0	0
ATP13A3	79572	broad.mit.edu	37	3	194170952	194170952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:194170952G>A	uc003fty.3	-	10	1294	c.892C>T	c.(892-894)CCA>TCA	p.P298S	ATP13A3_uc003ftz.1_Missense_Mutation_p.P4S	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	298					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		CCATTTAATGGAATGACCATG	0.338													4	15					0	0	0.014758	0	0
C3orf21	152002	broad.mit.edu	37	3	194790788	194790788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:194790788G>A	uc003fum.3	-	4	946	c.838C>T	c.(838-840)CCG>TCG	p.P280S	C3orf21_uc003ful.2_Missense_Mutation_p.P77S|C3orf21_uc003fuk.2_Missense_Mutation_p.P74S	NM_152531	NP_689744	Q8NBI6	CC021_HUMAN	hypothetical protein LOC152002	280						integral to membrane	transferase activity, transferring glycosyl groups				0	all_cancers(143;9.33e-09)|Ovarian(172;0.0634)		Epithelial(36;1.73e-20)|all cancers(36;1.42e-18)|OV - Ovarian serous cystadenocarcinoma(49;1.56e-17)|Lung(62;0.000117)|LUSC - Lung squamous cell carcinoma(58;0.000146)	GBM - Glioblastoma multiforme(46;1.36e-05)		TCGGGGGGCGGGCCCCCAACC	0.677													31	41					0	0	0.064281	0	0
LOC220729	220729	broad.mit.edu	37	3	197348646	197348646	+	RNA	SNP	T	C	C	rs138265355	by1000genomes	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr3:197348646T>C	uc011bug.1	-	4		c.445A>G			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						TGGGCCTGCCTGCCCTTTCCA	0.532													4	63					0	0	0.021553	0	0
PDE6B	5158	broad.mit.edu	37	4	651211	651211	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:651211C>T	uc003gap.2	+	10	1382	c.1329C>T	c.(1327-1329)AAC>AAT	p.N443N	PDE6B_uc003gao.3_Silent_p.N443N|PDE6B_uc011buy.1_Silent_p.N164N|uc003gaq.1_5'Flank	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	443					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						AGCTGGAGAACCGCAAGGACA	0.597													14	28					0	0	0.119110	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2306992	2306992	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:2306992A>T	uc003gex.1	-	8	1394	c.1075T>A	c.(1075-1077)TTG>ATG	p.L359M	ZFYVE28_uc011bvk.1_Missense_Mutation_p.L289M|ZFYVE28_uc011bvl.1_Missense_Mutation_p.L329M|ZFYVE28_uc003gew.1_Missense_Mutation_p.L245M	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	359					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						GGTGAAAGCAAAGAGGACATC	0.677													16	29					0	0	0.132662	0	0
FAM193A	8603	broad.mit.edu	37	4	2691333	2691333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:2691333C>T	uc010icl.2	+	12	1910	c.1559C>T	c.(1558-1560)CCA>CTA	p.P520L	FAM193A_uc010ick.2_Missense_Mutation_p.P720L|FAM193A_uc003gfd.2_Missense_Mutation_p.P520L|FAM193A_uc011bvm.1_Missense_Mutation_p.P542L|FAM193A_uc011bvn.1_Missense_Mutation_p.P520L|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.P374L	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	520										ovary(3)	3						GGGAATACTCCAGAGTGGAAT	0.398													28	36					0	0	0.125774	0	0
WFS1	7466	broad.mit.edu	37	4	6302829	6302829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:6302829C>T	uc003giy.2	+	8	1473	c.1307C>T	c.(1306-1308)ACC>ATC	p.T436I	WFS1_uc003gix.2_Missense_Mutation_p.T436I|WFS1_uc003giz.2_Missense_Mutation_p.T254I	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	436	Helical; (Potential).				endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		GCTGTCATCACCGGCTTCTTT	0.622													147	240					0	0	0.139131	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229467	8229467	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:8229467G>A	uc003gkv.3	+	12	2147	c.2046G>A	c.(2044-2046)GAG>GAA	p.E682E	SH3TC1_uc003gkw.3_Silent_p.E606E|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	682	TPR 3.						binding			large_intestine(2)|pancreas(1)	3						AGCAGCCCGAGGAGGCCCTGC	0.701													18	11					0	0	0.043863	0	0
DRD5	1816	broad.mit.edu	37	4	9784300	9784300	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:9784300A>G	uc003gmb.3	+	1	1043	c.647A>G	c.(646-648)AAC>AGC	p.N216S		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	216	Extracellular (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	AATGCAGAGAACTGTGACTCC	0.592													34	63					0	0	0.092188	0	0
CLNK	116449	broad.mit.edu	37	4	10542157	10542157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:10542157G>A	uc003gmo.3	-	11	700	c.563C>T	c.(562-564)TCT>TTT	p.S188F	CLNK_uc003gmp.2_Missense_Mutation_p.S146F	NM_052964	NP_443196	Q7Z7G1	CLNK_HUMAN	mast cell immunoreceptor signal transducer	188					immune response|intracellular signal transduction	intracellular	SH3/SH2 adaptor activity			ovary(1)	1						GTGTCTCTGAGATAAAGGTGG	0.547													24	31					0	0	0.144211	0	0
KCNIP4	80333	broad.mit.edu	37	4	20852170	20852170	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:20852170T>C	uc003gqe.2	-	2	317	c.233A>G	c.(232-234)AAG>AGG	p.K78R	KCNIP4_uc003gqf.1_Missense_Mutation_p.K74R|KCNIP4_uc003gqg.1_Missense_Mutation_p.K33R|KCNIP4_uc003gqh.1_Missense_Mutation_p.K70R|KCNIP4_uc003gqi.1_Missense_Mutation_p.K33R|KCNIP4_uc010iel.2_Missense_Mutation_p.K75R|KCNIP4_uc003gqd.3_Missense_Mutation_p.K58R	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	95	EF-hand 1; degenerate.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				TCTTACATTCTTAAATCCTCT	0.443													45	69					0	0	0.139131	0	0
TBC1D1	23216	broad.mit.edu	37	4	38051340	38051340	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:38051340C>T	uc003gtb.2	+	11	2074	c.1731C>T	c.(1729-1731)CTC>CTT	p.L577L	TBC1D1_uc011byd.1_Silent_p.L577L|TBC1D1_uc010ifd.2_Silent_p.L324L|TBC1D1_uc011byf.1_Silent_p.L448L	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	577						nucleus	Rab GTPase activator activity			ovary(1)	1						AGAGTCATCTCCCAGAAGAGC	0.592													35	41					0	0	0.059317	0	0
PDS5A	23244	broad.mit.edu	37	4	39846297	39846297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:39846297G>A	uc003guv.3	-	30	4067	c.3527C>T	c.(3526-3528)CCT>CTT	p.P1176L	PDS5A_uc010ifo.2_Missense_Mutation_p.P1136L	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	1176					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						TCCGGTTGAAGGGTTCAGCTC	0.388													33	53					0	0	0.059317	0	0
ATP8A1	10396	broad.mit.edu	37	4	42627695	42627695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:42627695C>T	uc003gwr.2	-	3	432	c.200G>A	c.(199-201)AGA>AAA	p.R67K	ATP8A1_uc003gws.2_Missense_Mutation_p.R67K|ATP8A1_uc011byz.1_Missense_Mutation_p.R67K	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	67	Helical; (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GTAGAGAAATCTTGGAAGGAA	0.348													15	13					0	0	0.038395	0	0
GABRA4	2557	broad.mit.edu	37	4	46979578	46979578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:46979578C>T	uc003gxg.2	-	4	482	c.343G>A	c.(343-345)GAA>AAA	p.E115K		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	115	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CTCAAAATTTCAATGGGGCCG	0.363													30	38					0	0	0.054565	0	0
KIT	3815	broad.mit.edu	37	4	55595626	55595626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:55595626C>T	uc010igr.2	+	14	2203	c.2116C>T	c.(2116-2118)CTT>TTT	p.L706F	KIT_uc010igs.2_Missense_Mutation_p.L702F|KIT_uc010igt.1_Missense_Mutation_p.L155F	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	706	Protein kinase.|Cytoplasmic (Potential).				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	TTATAAGAATCTTCTGCATTC	0.373		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				38	50					0	0	0.069456	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885758	69885758	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:69885758G>A	uc011cao.1	-	4	367	c.231C>T	c.(229-231)ATC>ATT	p.I77I	UGT2B10_uc011can.1_Silent_p.I77I			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	114					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ATGCCCACATGATTTCTTGTT	0.284													8	13					0	0	0.038147	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146659	70146659	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:70146659C>T	uc003hej.2	+	1	443	c.441C>T	c.(439-441)ATC>ATT	p.I147I	UGT2B28_uc010ihr.2_Silent_p.I147I	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	147					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GATTTGACATCATTTTTGCAG	0.368													30	63					0	0	0.134883	0	0
SLC4A4	8671	broad.mit.edu	37	4	72429552	72429552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:72429552C>T	uc003hfy.2	+	24	3259	c.3142C>T	c.(3142-3144)CCA>TCA	p.P1048S	SLC4A4_uc010iic.2_Intron|SLC4A4_uc010iib.2_Missense_Mutation_p.P964S|SLC4A4_uc003hfz.2_Missense_Mutation_p.P1048S|SLC4A4_uc003hgc.3_Missense_Mutation_p.P1004S|SLC4A4_uc010iid.2_Missense_Mutation_p.P252S	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	1048	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TATTAAAATTCCAATGGACAT	0.373													58	62					0	0	0.139131	0	0
GC	2638	broad.mit.edu	37	4	72629585	72629585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:72629585C>T	uc003hge.2	-	5	695	c.542G>A	c.(541-543)AGT>AAT	p.S181N	GC_uc003hgd.2_Missense_Mutation_p.S59N|GC_uc010iie.2_Missense_Mutation_p.S181N|GC_uc010iif.2_Missense_Mutation_p.S200N	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	181	Albumin 1.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	AGAAAGATAACTCTTGGTGTA	0.368													30	67					0	0	0.144211	0	0
ALB	213	broad.mit.edu	37	4	74274439	74274439	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:74274439C>T	uc003hgs.3	+	4	472	c.399C>T	c.(397-399)AAC>AAT	p.N133N	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_Intron|ALB_uc003hgt.3_Silent_p.N133N|ALB_uc010iii.2_Intron|ALB_uc003hgu.3_Intron|ALB_uc003hgv.3_Intron|ALB_uc011cbf.1_Silent_p.N23N|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'Flank	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	133	Albumin 1.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	AAGATGACAACCCAAACCTCC	0.418													14	18					0	0	0.033300	0	0
FRAS1	80144	broad.mit.edu	37	4	79328974	79328974	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:79328974G>A	uc003hlb.2	+	31	4727	c.4287G>A	c.(4285-4287)CAG>CAA	p.Q1429Q	FRAS1_uc003hkw.2_Silent_p.Q1429Q	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1428	CSPG 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CCCCAGCCCAGAGCGACTCCT	0.512													15	16					0	0	0.132662	0	0
SCD5	79966	broad.mit.edu	37	4	83552506	83552506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:83552506C>T	uc003hna.2	-	5	1287	c.967G>A	c.(967-969)GCC>ACC	p.A323T		NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	323					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				CCAGTCCTGGCCTTCCGGGCC	0.532													18	14					0	0	0.055883	0	0
MAPK10	5602	broad.mit.edu	37	4	86950413	86950413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:86950413C>T	uc003hpq.2	-	12	1256	c.1189G>A	c.(1189-1191)GAA>AAA	p.E397K	MAPK10_uc010ikg.2_Missense_Mutation_p.E359K|MAPK10_uc003hpr.2_Missense_Mutation_p.E359K|MAPK10_uc003hps.2_Missense_Mutation_p.E397K|MAPK10_uc003hpt.2_Missense_Mutation_p.E397K|MAPK10_uc003hpu.2_Missense_Mutation_p.E397K|MAPK10_uc003hpv.2_Missense_Mutation_p.E252K|MAPK10_uc003hpn.2_Missense_Mutation_p.E145K|MAPK10_uc003hpo.2_Missense_Mutation_p.E252K|MAPK10_uc011ccw.1_Missense_Mutation_p.E283K|MAPK10_uc003hpp.2_Missense_Mutation_p.E252K	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	397					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		TTCATTACTTCCTTGTAGATA	0.333													17	17					0	0	0.049695	0	0
KLHL8	57563	broad.mit.edu	37	4	88106875	88106875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:88106875G>A	uc011cdb.1	-	3	678	c.293C>T	c.(292-294)TCT>TTT	p.S98F	KLHL8_uc003hql.1_Missense_Mutation_p.S98F|KLHL8_uc003hqm.1_Intron|KLHL8_uc003hqn.1_Intron|KLHL8_uc010ikj.1_Intron	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	98	BTB.										0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		AGCCATTTCAGAAAGAAACAT	0.398													5	13					0	0	0.021553	0	0
HERC5	51191	broad.mit.edu	37	4	89421091	89421091	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:89421091T>A	uc003hrt.2	+	19	2612	c.2459T>A	c.(2458-2460)CTT>CAT	p.L820H	HERC5_uc011cdm.1_Missense_Mutation_p.L458H	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	820	HECT.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		TTGCAAACACTTCTGGATGAT	0.294													30	39					0	0	0.050027	0	0
GRID2	2895	broad.mit.edu	37	4	94006221	94006221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:94006221C>T	uc011cdt.1	+	3	578	c.320C>T	c.(319-321)TCT>TTT	p.S107F	GRID2_uc010ikx.2_Missense_Mutation_p.S107F|GRID2_uc011cdu.1_Intron|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	107	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TCCCTCCAGTCTTTGGCAGAC	0.537													17	35					0	0	0.043863	0	0
TACR3	6870	broad.mit.edu	37	4	104579504	104579504	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:104579504A>T	uc003hxe.1	-	2	748	c.605T>A	c.(604-606)ATT>AAT	p.I202N		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	202	Helical; Name=4; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TCCAATGACAATCTTGGTTGC	0.378													29	20					0	0	0.125774	0	0
TET2	54790	broad.mit.edu	37	4	106156272	106156272	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:106156272C>T	uc003hxk.2	+	3	1559	c.1173C>T	c.(1171-1173)TCC>TCT	p.S391S	TET2_uc011cez.1_Silent_p.S412S|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Silent_p.S391S|TET2_uc003hxi.1_Silent_p.S391S	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	391					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		CTAAGGATTCCTTTTCTGCCA	0.458			Mis N|F		MDS								23	55					0	0	0.091800	0	0
EGF	1950	broad.mit.edu	37	4	110909835	110909835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:110909835G>A	uc003hzy.3	+	18	3156	c.2704G>A	c.(2704-2706)GGC>AGC	p.G902S	EGF_uc011cfu.1_Missense_Mutation_p.G860S|EGF_uc011cfv.1_Missense_Mutation_p.G902S|EGF_uc010imk.2_Intron	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	902	EGF-like 7; calcium-binding (Potential).|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	GTGCTCAGAAGGCTACCAAGG	0.547													42	62					0	0	0.117977	0	0
TRAM1L1	133022	broad.mit.edu	37	4	118005895	118005895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:118005895C>T	uc003ibv.3	-	1	842	c.655G>A	c.(655-657)GGA>AGA	p.G219R		NM_152402	NP_689615	Q8N609	TR1L1_HUMAN	translocation associated membrane protein 1-like	219	Lumenal (Potential).|TLC.				protein transport|transmembrane transport	endoplasmic reticulum membrane|integral to membrane				central_nervous_system(1)	1						AGAAGAAGTCCCAAATGATTC	0.388													11	29					0	0	0.080935	0	0
PRSS12	8492	broad.mit.edu	37	4	119203249	119203249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:119203249C>T	uc003ica.1	-	13	2517	c.2470G>A	c.(2470-2472)GAC>AAC	p.D824N		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	824	Peptidase S1.					membrane	scavenger receptor activity			skin(1)	1						CCTCCGCTGTCTCCCTGGCAG	0.542													29	37					0	0	0.134883	0	0
TRPC3	7222	broad.mit.edu	37	4	122854149	122854149	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:122854149C>T	uc003ieg.2	-	2	338	c.264G>A	c.(262-264)GAG>GAA	p.E88E	TRPC3_uc010inr.2_Silent_p.E15E|TRPC3_uc003ief.2_Silent_p.E15E|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	3	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GCCGGCCCTTCTCCCGCATCA	0.597													8	21					0	0	0.069234	0	0
FAT4	79633	broad.mit.edu	37	4	126367457	126367457	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:126367457C>T	uc003ifj.3	+	8	7203	c.7203C>T	c.(7201-7203)ATC>ATT	p.I2401I	FAT4_uc011cgp.1_Silent_p.I699I|FAT4_uc003ifi.1_5'Flank	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2401	Cadherin 23.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTTATAGGATCATCGGTGGAA	0.343													24	23					0	0	0.099896	0	0
SETD7	80854	broad.mit.edu	37	4	140444586	140444586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:140444586G>A	uc003ihw.2	-	5	852	c.566C>T	c.(565-567)TCA>TTA	p.S189L		NM_030648	NP_085151	Q8WTS6	SETD7_HUMAN	SET domain-containing protein 7	189					peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	histone-lysine N-methyltransferase activity|p53 binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.156)					GTGGTACACTGAATCTGAAAA	0.373													48	74					0	0	0.139131	0	0
CLGN	1047	broad.mit.edu	37	4	141315179	141315179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:141315179C>T	uc011chi.1	-	12	1384	c.1166G>A	c.(1165-1167)CGA>CAA	p.R389Q	CLGN_uc003iii.2_Missense_Mutation_p.R389Q	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	389	Lumenal (Potential).|2-4.				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					AGGAATTTTTCGAGGACTCCA	0.343													13	20					0	0	0.119110	0	0
DCLK2	166614	broad.mit.edu	37	4	151153563	151153563	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:151153563G>A	uc003ilm.3	+	9	1474	c.1374G>A	c.(1372-1374)GAG>GAA	p.E458E	DCLK2_uc003iln.3_Silent_p.E457E|DCLK2_uc003ilo.3_Silent_p.E475E|DCLK2_uc003ilp.3_RNA	NM_001040260	NP_001035350	Q8N568	DCLK2_HUMAN	doublecortin-like kinase 2 isoform a	458	Protein kinase.				intracellular signal transduction	cytoplasm|cytoskeleton	ATP binding|protein serine/threonine kinase activity			ovary(3)	3	all_hematologic(180;0.151)					TGGTCGAGGAGATGGAAACAG	0.428													92	116					0	0	0.139131	0	0
LRBA	987	broad.mit.edu	37	4	151203626	151203626	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:151203626C>T	uc010ipj.2	-	56	8799	c.8325G>A	c.(8323-8325)ACG>ACA	p.T2775T	LRBA_uc010ipi.2_Silent_p.T297T|LRBA_uc003ils.3_Silent_p.T670T|LRBA_uc003ilt.3_Silent_p.T1423T|LRBA_uc003ilu.3_Silent_p.T2763T|LRBA_uc003ilr.3_Silent_p.T195T	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2775						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					CTGTTTCCATCGTGGCCTGGA	0.468													40	66					0	0	0.111260	0	0
SH3D19	152503	broad.mit.edu	37	4	152069112	152069112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:152069112G>A	uc010ipl.1	-	11	2294	c.1204C>T	c.(1204-1206)CGT>TGT	p.R402C	SH3D19_uc003imb.2_Missense_Mutation_p.R180C|SH3D19_uc003imc.2_Missense_Mutation_p.R366C|SH3D19_uc003ime.2_Missense_Mutation_p.R402C|SH3D19_uc010ipm.2_Missense_Mutation_p.R402C	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	402					cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				GGTTTGGGACGAGGGGGTAGC	0.388													24	30					0	0	0.099896	0	0
FBXW7	55294	broad.mit.edu	37	4	153251903	153251903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:153251903C>T	uc003ims.2	-	7	1252	c.1103G>A	c.(1102-1104)GGA>GAA	p.G368E	FBXW7_uc011cii.1_Missense_Mutation_p.G368E|FBXW7_uc003imt.2_Missense_Mutation_p.G368E|FBXW7_uc011cih.1_Missense_Mutation_p.G192E|FBXW7_uc003imq.2_Missense_Mutation_p.G288E|FBXW7_uc003imr.2_Missense_Mutation_p.G250E	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	368					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TTTGAGTTCTCCTCGCCTCCA	0.388			Mis|N|D|F		colorectal|endometrial|T-ALL								5	88					0	0	0.021553	0	0
ARFIP1	27236	broad.mit.edu	37	4	153750825	153750825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:153750825C>T	uc003imz.2	+	2	316	c.40C>T	c.(40-42)CCA>TCA	p.P14S	ARFIP1_uc003inb.2_Missense_Mutation_p.P14S|ARFIP1_uc003ina.2_Missense_Mutation_p.P14S|ARFIP1_uc003inc.2_Missense_Mutation_p.P14S|ARFIP1_uc011cij.1_Missense_Mutation_p.P14S	NM_001025595	NP_001020766	P53367	ARFP1_HUMAN	ADP-ribosylation factor interacting protein 1	14					intracellular protein transport|regulation of protein secretion	cytosol|Golgi membrane				ovary(1)	1	all_hematologic(180;0.093)					AGCAGAAATTCCAGTGACTAG	0.363													47	80					0	0	0.139131	0	0
TRIM2	23321	broad.mit.edu	37	4	154197099	154197100	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:154197099_154197100CC>TT	uc003ing.2	+	3	390_391	c.189_190CC>TT	c.(187-192)TGCCGC>TGTTGC	p.R64C	TRIM2_uc003inh.2_Missense_Mutation_p.R91C|TRIM2_uc003ini.1_Missense_Mutation_p.R82C	NM_001130067	NP_001123539	Q9C040	TRIM2_HUMAN	tripartite motif-containing 2 isoform 2	64	RING-type.					cytoplasm	zinc ion binding			central_nervous_system(1)	1	all_hematologic(180;0.093)	Medulloblastoma(177;0.00225)		GBM - Glioblastoma multiforme(119;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0703)		GCCCAGTGTGCCGCCAGACCTC	0.569													29	33					0	0	0.115264	0	0
PDGFC	56034	broad.mit.edu	37	4	157693952	157693952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:157693952C>T	uc003iph.1	-	4	1080	c.589G>A	c.(589-591)GAA>AAA	p.E197K	PDGFC_uc003ipi.1_Missense_Mutation_p.E34K|PDGFC_uc011cis.1_Missense_Mutation_p.E34K|PDGFC_uc011cir.1_Missense_Mutation_p.E41K	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	197					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		ATAAGGTCTTCCAAGGTACTA	0.438													14	30					0	0	0.119110	0	0
RXFP1	59350	broad.mit.edu	37	4	159514616	159514616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:159514616C>T	uc003ipz.2	+	3	333	c.251C>T	c.(250-252)TCC>TTC	p.S84F	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_Missense_Mutation_p.S3F|RXFP1_uc010iqo.2_Missense_Mutation_p.S84F|RXFP1_uc011cjb.1_Missense_Mutation_p.S3F|RXFP1_uc010iqk.2_5'UTR|RXFP1_uc011cjc.1_Missense_Mutation_p.S3F|RXFP1_uc011cjd.1_Missense_Mutation_p.S3F|RXFP1_uc010iql.2_5'UTR|RXFP1_uc011cje.1_Missense_Mutation_p.S84F|RXFP1_uc010iqm.2_Intron|RXFP1_uc011cjf.1_Intron|RXFP1_uc010iqn.2_Missense_Mutation_p.S3F	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	84	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		AAAATGACTTCCCAATATCCT	0.323													13	26					0	0	0.146539	0	0
TKTL2	84076	broad.mit.edu	37	4	164393635	164393635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:164393635C>T	uc003iqp.3	-	1	1413	c.1252G>A	c.(1252-1254)GGT>AGT	p.G418S		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	418						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CAGTGGGAACCAATAAGGTTG	0.473													7	25					0	0	0.029380	0	0
DDX60L	91351	broad.mit.edu	37	4	169362542	169362542	+	Missense_Mutation	SNP	G	A	A	rs34420455		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:169362542G>A	uc003irq.3	-	10	1461	c.1240C>T	c.(1240-1242)CCT>TCT	p.P414S	DDX60L_uc003irr.1_Missense_Mutation_p.P414S|DDX60L_uc003irs.1_Missense_Mutation_p.P141S	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	414							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		GTTCTCAGAGGAAAAGACTTT	0.373													32	63					0	0	0.144211	0	0
GLRA3	8001	broad.mit.edu	37	4	175603979	175603979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:175603979C>T	uc003ity.1	-	6	1189	c.686G>A	c.(685-687)CGA>CAA	p.R229Q	GLRA3_uc003itz.1_Missense_Mutation_p.R229Q	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	229	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	AGTGCAGTATCGTAAATCTTT	0.373													18	8					0	0	0.049695	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455560	187455560	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr4:187455560G>A	uc003izd.1	-	2	354	c.336C>T	c.(334-336)ATC>ATT	p.I112I		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	112	Helical; Name=3; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	ATATGGAGCCGATGACGCTCA	0.527													27	22					0	0	0.144211	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5237115	5237115	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:5237115A>T	uc003jdl.2	+	14	2195	c.2057A>T	c.(2056-2058)GAA>GTA	p.E686V	ADAMTS16_uc003jdk.1_Missense_Mutation_p.E686V|ADAMTS16_uc010itk.1_Intron	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	686	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TGTATCGCAGAAGGATTTGAT	0.353													35	54					0	0	0.074837	0	0
Unknown	0	broad.mit.edu	37	5	7303889	7303889	+	RNA	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:7303889C>T	uc003jdy.1	-	5		c.465G>A								Homo sapiens cDNA FLJ42124 fis, clone TESTI2009477, weakly  similar to TRICHOHYALIN.																		GCACTGTTTCCAGTTCAGTTT	0.488													11	12					0	0	0.069234	0	0
ROPN1L	83853	broad.mit.edu	37	5	10461461	10461461	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:10461461A>G	uc003jex.3	+	4	854	c.583A>G	c.(583-585)AAG>GAG	p.K195E		NM_031916	NP_114122	Q96C74	ROP1L_HUMAN	ropporin 1-like	195					ciliary or flagellar motility|signal transduction	cytoplasm|motile cilium	cAMP-dependent protein kinase regulator activity|protein binding			ovary(1)	1						TGCCTCTCTAAAGGAAAATAT	0.418													43	56					0	0	0.139131	0	0
CTNND2	1501	broad.mit.edu	37	5	11565168	11565168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:11565168C>T	uc003jfa.1	-	3	320	c.175G>A	c.(175-177)GAA>AAA	p.E59K	CTNND2_uc010itt.2_5'UTR|CTNND2_uc011cmy.1_5'UTR|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	59	Potential.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AACTGTAATTCCTGAAAGAAA	0.468													11	19					0	0	0.069234	0	0
DNAH5	1767	broad.mit.edu	37	5	13753569	13753569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:13753569C>T	uc003jfd.2	-	63	10687	c.10645G>A	c.(10645-10647)GAA>AAA	p.E3549K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3549					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTTTCATTTCCTTCCGCCAG	0.403									Kartagener_syndrome				48	74					0	0	0.139131	0	0
DNAH5	1767	broad.mit.edu	37	5	13766106	13766106	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:13766106C>T	uc003jfd.2	-	59	10122	c.10080G>A	c.(10078-10080)GGG>GGA	p.G3360G	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3360	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTAAAAAGTTCCCTGCAGTCA	0.428									Kartagener_syndrome				39	66					0	0	0.104719	0	0
DNAH5	1767	broad.mit.edu	37	5	13820501	13820501	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:13820501C>T	uc003jfd.2	-	41	6837	c.6795G>A	c.(6793-6795)GGG>GGA	p.G2265G		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2265	AAA 2 (By similarity).|ATP (Potential).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTTCCCAGCCCCACTGGGCC	0.542									Kartagener_syndrome				16	30					0	0	0.132662	0	0
DNAH5	1767	broad.mit.edu	37	5	13864608	13864608	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:13864608C>T	uc003jfd.2	-	28	4536	c.4494G>A	c.(4492-4494)AGG>AGA	p.R1498R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1498	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGGTGGTTATCCTTTCCCAGT	0.458									Kartagener_syndrome				17	31					0	0	0.033300	0	0
PRDM9	56979	broad.mit.edu	37	5	23522840	23522840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:23522840C>T	uc003jgo.2	+	8	910	c.728C>T	c.(727-729)CCC>CTC	p.P243L		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	243					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CTCAGTCTGCCCCCAGGGCTG	0.572										HNSCC(3;0.000094)			12	24					0	0	0.105934	0	0
CDH6	1004	broad.mit.edu	37	5	31302310	31302310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:31302310G>A	uc003jhe.1	+	6	1230	c.904G>A	c.(904-906)GAA>AAA	p.E302K	CDH6_uc003jhd.1_Missense_Mutation_p.E302K	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	302	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AGAAAATGCTGAAATTGAGTA	0.448													31	24					0	0	0.045705	0	0
CDH6	1004	broad.mit.edu	37	5	31317540	31317540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:31317540C>T	uc003jhe.1	+	10	1897	c.1571C>T	c.(1570-1572)TCG>TTG	p.S524L	CDH6_uc003jhd.1_Missense_Mutation_p.S524L	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	524	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CACCAATTTTCGTTTTCCTTG	0.403													27	40					0	0	0.116897	0	0
RNASEN	29102	broad.mit.edu	37	5	31410872	31410872	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:31410872G>A	uc003jhg.2	-	30	4007	c.3648C>T	c.(3646-3648)ACC>ACT	p.T1216T	RNASEN_uc003jhh.2_Silent_p.T1179T|RNASEN_uc003jhi.2_Silent_p.T1179T	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	1216	Necessary for interaction with DGCR8 and pri-miRNA processing activity.|RNase III 2.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						GGTCCGCCAAGGTCTTGGTGC	0.507													49	73					0	0	0.139131	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576424	33576424	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:33576424A>G	uc003jia.1	-	19	3870	c.3707T>C	c.(3706-3708)GTT>GCT	p.V1236A	ADAMTS12_uc010iuq.1_Missense_Mutation_p.V1151A	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1236	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CATCCCCTCAACTCTGGGTGT	0.577										HNSCC(64;0.19)			42	54					0	0	0.098360	0	0
PRLR	5618	broad.mit.edu	37	5	35066046	35066046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:35066046C>T	uc003jjm.2	-	10	1544	c.1014G>A	c.(1012-1014)ATG>ATA	p.M338I	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.M237I	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	338	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	ATGTGGGTTTCATACCTTGAC	0.493													29	44					0	0	0.045705	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41010070	41010070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:41010070C>T	uc003jmj.3	-	31	3737	c.3247G>A	c.(3247-3249)GAT>AAT	p.D1083N	HEATR7B2_uc003jmi.3_Missense_Mutation_p.D638N	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1083							binding			ovary(6)|central_nervous_system(2)	8						ACAACTGTATCCATGTGAAAG	0.438													27	37					0	0	0.045705	0	0
C6	729	broad.mit.edu	37	5	41161948	41161948	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:41161948C>T	uc003jmk.2	-	10	1515	c.1305G>A	c.(1303-1305)CAG>CAA	p.Q435Q	C6_uc003jml.1_Silent_p.Q435Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	435	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TCTCTGCTCCCTGTATAAATG	0.398													25	21					0	0	0.099896	0	0
C6	729	broad.mit.edu	37	5	41195973	41195973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:41195973C>T	uc003jmk.2	-	5	718	c.508G>A	c.(508-510)GAA>AAA	p.E170K	C6_uc003jml.1_Missense_Mutation_p.E170K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	170	LDL-receptor class A.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CAGTCCCTTTCATCTGAATTG	0.413													30	44					0	0	0.144211	0	0
IL31RA	133396	broad.mit.edu	37	5	55185847	55185847	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:55185847A>G	uc003jql.2	+	6	721	c.656A>G	c.(655-657)AAC>AGC	p.N219S	IL31RA_uc003jqk.2_Missense_Mutation_p.N219S|IL31RA_uc011cqj.1_Missense_Mutation_p.N77S|IL31RA_uc003jqm.2_Missense_Mutation_p.N187S|IL31RA_uc003jqn.2_Missense_Mutation_p.N219S|IL31RA_uc010iwa.1_Missense_Mutation_p.N187S|IL31RA_uc003jqo.2_Missense_Mutation_p.N77S	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	187	Extracellular (Potential).|Fibronectin type-III 2.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				CAAACGTACAACCTCACGGGG	0.453													16	20					0	0	0.033300	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64468685	64468685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:64468685G>A	uc003jtp.2	-	23	3875	c.3061C>T	c.(3061-3063)CGC>TGC	p.R1021C	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1021	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GTGACCCAGCGAGGAGGAGGG	0.557													33	46					0	0	0.059317	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64511157	64511157	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:64511157G>A	uc003jtp.2	-	19	3244	c.2430C>T	c.(2428-2430)ATC>ATT	p.I810I	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Silent_p.I431I	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	810	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TTACCATGACGATGAGATTTT	0.303													25	33					0	0	0.108266	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64520858	64520858	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:64520858T>A	uc003jtp.2	-	17	2898	c.2084A>T	c.(2083-2085)AAT>ATT	p.N695I	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.N316I	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	695					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TCCCAAAATATTATCACAGCC	0.393													18	24					0	0	0.069288	0	0
CMYA5	202333	broad.mit.edu	37	5	79030995	79030995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:79030995C>T	uc003kgc.2	+	2	6479	c.6407C>T	c.(6406-6408)TCC>TTC	p.S2136F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2136						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAACCCATCTCCTCAATCCAT	0.448													33	32					0	0	0.054565	0	0
VCAN	1462	broad.mit.edu	37	5	82816938	82816938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:82816938C>T	uc003kii.3	+	7	3169	c.2813C>T	c.(2812-2814)TCT>TTT	p.S938F	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.S938F|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	938	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AAGCCAGTATCTACTGTTCCC	0.438													32	67					0	0	0.050027	0	0
VCAN	1462	broad.mit.edu	37	5	82837907	82837907	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:82837907T>A	uc003kii.3	+	8	9441	c.9085T>A	c.(9085-9087)TCA>ACA	p.S3029T	VCAN_uc003kij.3_Missense_Mutation_p.S2042T|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.S1693T	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3029	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GATAGCAGCATCAGAACAGCA	0.458													51	65					0	0	0.139131	0	0
GPR98	84059	broad.mit.edu	37	5	89938520	89938520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:89938520G>A	uc003kju.2	+	12	2404	c.2308G>A	c.(2308-2310)GAT>AAT	p.D770N	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	770	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTTGGAAAATGATGACCCTGG	0.408													45	74					0	0	0.131918	0	0
GPR98	84059	broad.mit.edu	37	5	89979669	89979669	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:89979669G>A	uc003kju.2	+	28	6027	c.5931G>A	c.(5929-5931)GGG>GGA	p.G1977G	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1977	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATCCATATGGGATATTCATTT	0.398													17	26					0	0	0.038395	0	0
GPR98	84059	broad.mit.edu	37	5	90024619	90024619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:90024619C>T	uc003kju.2	+	49	10391	c.10295C>T	c.(10294-10296)TCC>TTC	p.S3432F	GPR98_uc003kjt.2_Missense_Mutation_p.S1138F|GPR98_uc003kjv.2_Missense_Mutation_p.S1032F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3432	EAR 4.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGGCTAAACTCCCTTTTATTC	0.478													31	30					0	0	0.125774	0	0
ARSK	153642	broad.mit.edu	37	5	94918713	94918713	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:94918713C>T	uc003kld.2	+	4	668	c.510C>T	c.(508-510)GTC>GTT	p.V170V	ARSK_uc010jbg.2_Silent_p.V11V|ARSK_uc011cum.1_RNA	NM_198150	NP_937793	Q6UWY0	ARSK_HUMAN	arylsulfatase K precursor	170						extracellular region	arylsulfatase activity|metal ion binding			pancreas(1)	1		all_cancers(142;3.38e-06)|all_epithelial(76;6.57e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)		all cancers(79;6.5e-16)		GGACTAAAGTCAGAGTGATGG	0.413													29	47					0	0	0.125774	0	0
DMXL1	1657	broad.mit.edu	37	5	118454697	118454697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:118454697G>A	uc003ksd.2	+	8	1112	c.931G>A	c.(931-933)GAA>AAA	p.E311K	DMXL1_uc010jcl.1_Missense_Mutation_p.E311K|DMXL1_uc003ksc.1_Missense_Mutation_p.E311K	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	311										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		AAATGCTTTAGAAGTGAGTGT	0.323													7	14					0	0	0.038147	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129015583	129015583	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:129015583A>T	uc003kvb.1	+	17	2615	c.2615A>T	c.(2614-2616)AAA>ATA	p.K872I	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	872	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		ATCTCTGCCAAAGGTCCTACT	0.428													23	35					0	0	0.069288	0	0
BRD8	10902	broad.mit.edu	37	5	137485414	137485414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:137485414G>A	uc003lcf.1	-	23	3248	c.3193C>T	c.(3193-3195)CCT>TCT	p.P1065S	BRD8_uc003lcc.1_Intron	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	1065					cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TCGCCTGAAGGGGGCTGGTCT	0.493													11	41					0	0	0.069234	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530769	140530769	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:140530769C>T	uc003lir.2	+	1	931	c.931C>T	c.(931-933)CAG>TAG	p.Q311*	PCDHB6_uc011dah.1_Nonsense_Mutation_p.Q175*	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	311	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGAGGAAATTCAGTCTTATGA	0.468													29	46					0	0	0.144211	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558309	140558309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:140558309G>A	uc011dai.1	+	1	880	c.694G>A	c.(694-696)GAA>AAA	p.E232K	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	232	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTCTACATTGAAGTTGTCGA	0.507													55	63					0	0	0.139131	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594521	140594521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:140594521G>A	uc003lja.1	+	1	1013	c.826G>A	c.(826-828)GGA>AGA	p.G276R		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	276	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGAGTCAACGGAGAGATTTC	0.438													59	99					0	0	0.139131	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625546	140625546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:140625546C>T	uc003lje.2	+	1	400	c.400C>T	c.(400-402)CCT>TCT	p.P134S		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	134	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTGAGTTTCCTGAAAGAGA	0.428													29	43					0	0	0.054565	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730565	140730565	+	Silent	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:140730565T>A	uc003ljo.1	+	1	738	c.738T>A	c.(736-738)GTT>GTA	p.V246V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Silent_p.V246V	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	246	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATACAGGGTTAGCCTCCAAG	0.557													37	48					0	0	0.080422	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140763816	140763816	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:140763816C>T	uc003lka.1	+	1	1350	c.1350C>T	c.(1348-1350)CCC>CCT	p.P450P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Silent_p.P450P	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	450	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATAACCCACCCACCTTCCCCC	0.512													15	33					0	0	0.033300	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140783321	140783321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:140783321G>A	uc003lkh.1	+	1	802	c.802G>A	c.(802-804)GAC>AAC	p.D268N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.D268N	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	268	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACAGCCAGCGACCTGGATGA	0.438													33	45					0	0	0.054565	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801793	140801793	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:140801793G>A	uc003lkq.1	+	1	1257	c.999G>A	c.(997-999)ACG>ACA	p.T333T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Silent_p.T333T|PCDHGA11_uc003lkp.1_Silent_p.T333T	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	333	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCACCACGACGATGTTGATCA	0.408													23	30					0	0	0.069288	0	0
SH3RF2	153769	broad.mit.edu	37	5	145435702	145435702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:145435702C>T	uc003lnt.2	+	8	1719	c.1481C>T	c.(1480-1482)CCC>CTC	p.P494L	SH3RF2_uc011dbl.1_Missense_Mutation_p.P494L|SH3RF2_uc011dbm.1_5'UTR|SH3RF2_uc003lnu.2_5'UTR|SH3RF2_uc011dbn.1_5'UTR	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	494							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATAGTCAACCCCGTGAGAAGC	0.567													48	71					0	0	0.139131	0	0
RBM27	54439	broad.mit.edu	37	5	145643114	145643114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:145643114C>T	uc003lnz.3	+	14	2417	c.2251C>T	c.(2251-2253)CGT>TGT	p.R751C	RBM27_uc003lny.2_Missense_Mutation_p.R696C	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	751					mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGTTAAACATCGTCTTGGACA	0.378													35	54					0	0	0.074837	0	0
SPINK5	11005	broad.mit.edu	37	5	147480127	147480127	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:147480127C>T	uc003lox.2	+	13	1276	c.1203C>T	c.(1201-1203)TCC>TCT	p.S401S	SPINK5_uc010jgs.1_Silent_p.S373S|SPINK5_uc010jgr.2_Silent_p.S382S|SPINK5_uc003low.2_Silent_p.S401S|SPINK5_uc003loy.2_Silent_p.S401S	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	401	Kazal-like 6.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACACCTGCTCCATGTGTGAGG	0.423													32	28					0	0	0.064281	0	0
PDGFRB	5159	broad.mit.edu	37	5	149500874	149500874	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:149500874T>C	uc003lro.2	-	17	2825	c.2356A>G	c.(2356-2358)ACC>GCC	p.T786A	PDGFRB_uc010jhd.2_Missense_Mutation_p.T625A	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	786	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GCTCGGCAGGTCCTCTCAGGG	0.562			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								24	44					0	0	0.144211	0	0
FAT2	2196	broad.mit.edu	37	5	150946913	150946913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:150946913C>T	uc003lue.3	-	1	1593	c.1580G>A	c.(1579-1581)AGA>AAA	p.R527K	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.R527K	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	527	Cadherin 4.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGTATAAATTCTTTTCATGAG	0.463													38	48					0	0	0.111260	0	0
MFAP3	4238	broad.mit.edu	37	5	153432802	153432802	+	Silent	SNP	C	T	T	rs142736423		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:153432802C>T	uc003lvf.2	+	3	1134	c.618C>T	c.(616-618)ATC>ATT	p.I206I	MFAP3_uc010jib.2_Silent_p.I206I|MFAP3_uc011ddb.1_Silent_p.I60I	NM_001135037	NP_001128509	P55082	MFAP3_HUMAN	microfibrillar-associated protein 3 isoform 2	206	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	Renal(175;0.00488)	Lung NSC(249;0.00145)|all_lung(500;0.00226)|all_neural(177;0.122)|Breast(839;0.14)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;9.69e-06)|GBM - Glioblastoma multiforme(465;0.0201)		CAAAACGTATCCCCATCATTA	0.448													25	43					0	0	0.108266	0	0
GEMIN5	25929	broad.mit.edu	37	5	154275824	154275824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:154275824G>A	uc003lvx.3	-	24	3508	c.3425C>T	c.(3424-3426)TCC>TTC	p.S1142F	GEMIN5_uc011ddk.1_Missense_Mutation_p.S1141F	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1142					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GTAAGAGGAGGAGCTTTTGCC	0.542													12	26					0	0	0.105934	0	0
HMMR	3161	broad.mit.edu	37	5	162902636	162902636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:162902636C>T	uc003lzf.2	+	11	1405	c.1223C>T	c.(1222-1224)TCT>TTT	p.S408F	HMMR_uc003lzh.2_Missense_Mutation_p.S409F|HMMR_uc003lzg.2_Missense_Mutation_p.S393F|HMMR_uc011dem.1_Missense_Mutation_p.S322F	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	408						cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		GAAGCAAAATCTAGAGCTGAA	0.353													10	20					0	0	0.069234	0	0
GABRP	2568	broad.mit.edu	37	5	170235729	170235729	+	Missense_Mutation	SNP	G	A	A	rs139800251	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:170235729G>A	uc003mau.2	+	8	1003	c.805G>A	c.(805-807)GAT>AAT	p.D269N	GABRP_uc011dev.1_Missense_Mutation_p.D269N	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	269						cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GATCTCTCTCGATTCAGTCCC	0.423													25	31					0	0	0.134883	0	0
RANBP17	64901	broad.mit.edu	37	5	170725792	170725792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:170725792G>A	uc003mba.2	+	28	3213	c.3197G>A	c.(3196-3198)AGA>AAA	p.R1066K	RANBP17_uc003mbb.2_Missense_Mutation_p.R391K|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	1066					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCTGTATTCAGAAGAGATGTG	0.502			T	TRD@	ALL								19	23					0	0	0.091800	0	0
GRM6	2916	broad.mit.edu	37	5	178419000	178419000	+	Missense_Mutation	SNP	C	T	T	rs140082247	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:178419000C>T	uc003mjr.2	-	2	768	c.589G>A	c.(589-591)GAC>AAC	p.D197N	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	197	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		TGGTAGGAGTCGGGTGGCACC	0.622													11	29					0	0	0.093190	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178580539	178580539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:178580539C>T	uc003mjw.2	-	9	1468	c.1468G>A	c.(1468-1470)GAG>AAG	p.E490K	ADAMTS2_uc011dgm.1_Missense_Mutation_p.E490K	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	490	Disintegrin.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CGGCATTGCTCGTTCATGGAG	0.667													8	25					0	0	0.038147	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178770912	178770912	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:178770912G>A	uc003mjw.2	-	2	390	c.390C>T	c.(388-390)CTC>CTT	p.L130L	ADAMTS2_uc011dgm.1_Silent_p.L130L	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	130					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CGGGCGCCACGAGGCGGGCGT	0.697													15	12					0	0	0.119110	0	0
CNOT6	57472	broad.mit.edu	37	5	179977018	179977018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:179977018C>T	uc003mlx.2	+	3	549	c.200C>T	c.(199-201)CCT>CTT	p.P67L	CNOT6_uc010jld.2_Missense_Mutation_p.P67L|CNOT6_uc010jle.2_Missense_Mutation_p.P67L	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	67	LRR 1.				nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		TCCCGAATTCCTTCAGACATT	0.428													41	131					0	0	0.104719	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166711	180166711	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr5:180166711C>T	uc003mmf.1	-	1	348	c.348G>A	c.(346-348)GTG>GTA	p.V116V		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGCCATCACCACCAGGAGCA	0.607													28	22					0	0	0.108266	0	0
RREB1	6239	broad.mit.edu	37	6	7229427	7229427	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:7229427C>T	uc003mxc.2	+	10	1485	c.1095C>T	c.(1093-1095)GCC>GCT	p.A365A	RREB1_uc003mxb.2_Silent_p.A365A|RREB1_uc010jnx.2_Silent_p.A365A	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	365					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				GCTTCCTGGCCTTGCTTGGCC	0.642													21	6					0	0	0.076483	0	0
KIAA0319	9856	broad.mit.edu	37	6	24563739	24563739	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:24563739C>T	uc011djo.1	-	16	2676	c.2439G>A	c.(2437-2439)AGG>AGA	p.R813R	KIAA0319_uc011djp.1_Silent_p.R768R|KIAA0319_uc003neh.1_Silent_p.R813R|KIAA0319_uc011djq.1_Silent_p.R804R|KIAA0319_uc011djr.1_Silent_p.R813R|KIAA0319_uc010jpt.1_Silent_p.R224R	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	813	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GGCCACTCTTCCTAGGGTCTG	0.537													21	1					0	0	0.076483	0	0
NKAPL	222698	broad.mit.edu	37	6	28228056	28228056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:28228056G>A	uc003nkt.2	+	1	959	c.907G>A	c.(907-909)GGT>AGT	p.G303S	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	303										upper_aerodigestive_tract(1)|ovary(1)	2						TTTGCTTCCCGGTGAAGGTGC	0.428													67	13					0	0	0.139131	0	0
PGBD1	84547	broad.mit.edu	37	6	28253470	28253470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:28253470C>T	uc003nky.2	+	3	909	c.539C>T	c.(538-540)CCC>CTC	p.P180L	PGBD1_uc003nkz.2_Missense_Mutation_p.P180L	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	180					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						CAAGGGAACCCCCAAGAAGTG	0.522													41	10					0	0	0.139131	0	0
PGBD1	84547	broad.mit.edu	37	6	28269230	28269230	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:28269230C>T	uc003nky.2	+	7	1969	c.1599C>T	c.(1597-1599)TTC>TTT	p.F533F	PGBD1_uc003nkz.2_Silent_p.F533F	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	533					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						ATAAAAATTTCCTCTTGTATG	0.348													69	12					0	0	0.139131	0	0
HLA-A	3105	broad.mit.edu	37	6	29912168	29912168	+	Silent	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:29912168A>C	uc003nol.2	+	4	889	c.889A>C	c.(889-891)AGA>CGA	p.R297R	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Silent_p.R176R|HLA-A_uc003nok.2_Silent_p.R176R|HLA-A_uc003non.2_Silent_p.R297R|HLA-A_uc003noo.2_Silent_p.R297R|HLA-A_uc010jrr.2_Silent_p.R297R|HLA-A_uc003nom.2_Silent_p.R176R|HLA-A_uc010klp.2_Silent_p.R269R|HLA-A_uc011dmc.1_Silent_p.R176R|HLA-A_uc011dmd.1_Silent_p.R176R	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	297	Extracellular (Potential).|Alpha-3.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CCTCACCCTGAGATGGGGTAA	0.597									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			34	54					0	0	0.069456	0	0
BAT2	7916	broad.mit.edu	37	6	31594906	31594906	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:31594906C>T	uc003nvb.3	+	11	1470	c.1221C>T	c.(1219-1221)GCC>GCT	p.A407A	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Silent_p.A407A	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	407	4 X 57 AA type A repeats.|2 X type B repeats.|2-1.					cytoplasm|nucleus	protein binding				0						GACCTCCTGCCCCAAAGCCTC	0.652													27	8					0	0	0.125774	0	0
APOM	55937	broad.mit.edu	37	6	31623783	31623783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:31623783G>A	uc003nvl.2	+	1	113	c.40G>A	c.(40-42)GGT>AGT	p.G14S	APOM_uc003nvk.2_Intron	NM_019101	NP_061974	O95445	APOM_HUMAN	apolipoprotein M	14				MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKE -> RFPDSIWGSRSDTSGSPQVPKLYFCGARRESPQPQT (in Ref. 3; AAF29014).	cholesterol efflux|high-density lipoprotein particle assembly|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|negative regulation of plasma lipoprotein particle oxidation|reverse cholesterol transport	discoidal high-density lipoprotein particle|integral to plasma membrane|low-density lipoprotein particle|spherical high-density lipoprotein particle|very-low-density lipoprotein particle	binding|lipid transporter activity				0						CTACTTCTATGGTATTATCCT	0.532													99	21					0	0	0.139131	0	0
CFB	629	broad.mit.edu	37	6	31918410	31918410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:31918410G>A	uc003nyj.3	+	13	1917	c.1639G>A	c.(1639-1641)GAC>AAC	p.D547N	CFB_uc011dor.1_Missense_Mutation_p.D1049N|CFB_uc003nyi.2_Silent_p.G618G	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	547	Peptidase S1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GGAGAAGCGGGACCTGGAGAT	0.488													212	38					0	0	0.139131	0	0
ABCC10	89845	broad.mit.edu	37	6	43412968	43412968	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:43412968C>T	uc003ouy.1	+	14	3161	c.2946C>T	c.(2944-2946)ACC>ACT	p.T982T	ABCC10_uc003ouz.1_Silent_p.T954T|ABCC10_uc010jyo.1_Silent_p.T88T	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	982	ABC transmembrane type-1 2.|Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CCCTCTGCACCCTTCTCCGGG	0.592													43	37					0	0	0.139131	0	0
TMEM63B	55362	broad.mit.edu	37	6	44116100	44116100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:44116100C>T	uc003owr.2	+	13	1163	c.1099C>T	c.(1099-1101)CAC>TAC	p.H367Y	TMEM63B_uc003owq.1_Missense_Mutation_p.H367Y|TMEM63B_uc003ows.2_Missense_Mutation_p.H270Y|TMEM63B_uc010jyz.2_RNA	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	367						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			TGTCACCTTCCACAATGAGAC	0.572													76	56					0	0	0.139131	0	0
CDC5L	988	broad.mit.edu	37	6	44397582	44397582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:44397582C>T	uc003oxl.2	+	14	2285	c.2026C>T	c.(2026-2028)CGC>TGC	p.R676C		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	676	Potential.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TGGGCAGAGCCGCTACACACG	0.408													31	71					0	0	0.045705	0	0
ENPP4	22875	broad.mit.edu	37	6	46107692	46107692	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:46107692G>A	uc003oxy.2	+	2	631	c.372G>A	c.(370-372)CAG>CAA	p.Q124Q		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	124	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						TGACCAATCAGCTTCAGGAAA	0.418													43	106					0	0	0.139131	0	0
ENPP5	59084	broad.mit.edu	37	6	46133226	46133226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:46133226G>A	uc003oxz.1	-	3	1112	c.904C>T	c.(904-906)CCA>TCA	p.P302S	ENPP5_uc003oya.1_Missense_Mutation_p.P302S|ENPP5_uc011dvz.1_Missense_Mutation_p.P208S|ENPP5_uc010jzc.1_Missense_Mutation_p.P302S	NM_021572	NP_067547	Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	302						extracellular region|integral to membrane	hydrolase activity				0						CACCTTTCTGGAACGTCTTCT	0.398													40	90					0	0	0.086207	0	0
MEP1A	4224	broad.mit.edu	37	6	46801057	46801057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:46801057G>A	uc010jzh.1	+	11	1433	c.1391G>A	c.(1390-1392)GGA>GAA	p.G464E	MEP1A_uc011dwg.1_Missense_Mutation_p.G186E|MEP1A_uc011dwh.1_Missense_Mutation_p.G492E|MEP1A_uc011dwi.1_Missense_Mutation_p.G364E	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	464	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			AATTCGGAGGGATATGGTTTT	0.493													36	66					0	0	0.059317	0	0
DEFB112	245915	broad.mit.edu	37	6	50011502	50011502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:50011502C>T	uc011dws.1	-	2	128	c.128G>A	c.(127-129)GGG>GAG	p.G43E		NM_001037498	NP_001032587	Q30KQ8	DB112_HUMAN	beta-defensin 112 precursor	43					defense response to bacterium	extracellular region				central_nervous_system(1)	1	Lung NSC(77;0.042)					GATATGGTGCCCTTCACTTCT	0.408													34	31					0	0	0.074837	0	0
PKHD1	5314	broad.mit.edu	37	6	51890262	51890262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:51890262C>T	uc003pah.1	-	32	4622	c.4346G>A	c.(4345-4347)GGT>GAT	p.G1449D	PKHD1_uc003pai.2_Missense_Mutation_p.G1449D	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1449	IPT/TIG 9.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CAAGGGGTCACCCTCCAGGCT	0.522													28	56					0	0	0.125774	0	0
IL17F	112744	broad.mit.edu	37	6	52101880	52101880	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:52101880T>C	uc003pam.1	-	3	412	c.341A>G	c.(340-342)GAA>GGA	p.E114G	IL17F_uc003pal.1_Missense_Mutation_p.E60G	NM_052872	NP_443104	Q96PD4	IL17F_HUMAN	interleukin 17F precursor	114					cartilage development|inflammatory response|lymphotoxin A biosynthetic process|negative regulation of angiogenesis|proteoglycan metabolic process|regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|regulation of interleukin-2 biosynthetic process|regulation of interleukin-6 biosynthetic process|regulation of interleukin-8 biosynthetic process|regulation of transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|cytokine binding|protein homodimerization activity			ovary(1)	1	Lung NSC(77;0.116)					GGAGATGTCTTCCTTTCCTTG	0.552													20	42					0	0	0.049695	0	0
MCM3	4172	broad.mit.edu	37	6	52134018	52134018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:52134018G>A	uc003pan.1	-	13	1944	c.1834C>T	c.(1834-1836)CCA>TCA	p.P612S	MCM3_uc011dwu.1_Missense_Mutation_p.P566S	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	612					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					GCTGTAACTGGAGATGTCTAG	0.512													80	40					0	0	0.139131	0	0
MCM3	4172	broad.mit.edu	37	6	52143544	52143544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:52143544G>A	uc003pan.1	-	6	985	c.875C>T	c.(874-876)TCC>TTC	p.S292F	MCM3_uc011dwu.1_Missense_Mutation_p.S246F	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	292					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					CCAGACCTTGGATCGGGTTTT	0.438													33	36					0	0	0.086207	0	0
HCRTR2	3062	broad.mit.edu	37	6	55145171	55145171	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:55145171G>A	uc003pcl.2	+	6	1349	c.1034G>A	c.(1033-1035)TGG>TAG	p.W345*	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	345	Helical; Name=7; (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GTGTATGCCTGGTTTACCTTT	0.363													31	127					0	0	0.074837	0	0
COL21A1	81578	broad.mit.edu	37	6	55933915	55933915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:55933915C>T	uc003pcs.2	-	22	2252	c.2020G>A	c.(2020-2022)GGA>AGA	p.G674R	COL21A1_uc010jzz.2_Missense_Mutation_p.G59R|COL21A1_uc011dxg.1_Missense_Mutation_p.G59R|COL21A1_uc011dxh.1_Missense_Mutation_p.G59R|COL21A1_uc003pcr.2_Silent_p.R31R	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	674	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CCTGGTTCTCCCTATGTAACA	0.408													10	13					0	0	0.069234	0	0
COL21A1	81578	broad.mit.edu	37	6	56033065	56033065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:56033065G>A	uc003pcs.2	-	6	1289	c.1057C>T	c.(1057-1059)CGT>TGT	p.R353C	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.R353C|COL21A1_uc003pcu.1_Missense_Mutation_p.R353C	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	353	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			ACTAAGAGACGAATTTGGTGC	0.348													5	16					0	0	0.021553	0	0
LGSN	51557	broad.mit.edu	37	6	63995556	63995556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:63995556C>T	uc003peh.2	-	3	300	c.266G>A	c.(265-267)CGA>CAA	p.R89Q	LGSN_uc003pei.2_Missense_Mutation_p.R89Q|LGSN_uc003pej.1_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	89					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	TGCTTCAAATCGTACAAACTG	0.433													19	503					0	0	0.043863	0	0
BAI3	577	broad.mit.edu	37	6	70049224	70049224	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:70049224G>A	uc003pev.3	+	26	3736	c.3288_splice	c.e26-1	p.M1096_splice	BAI3_uc010kak.2_Splice_Site_p.M1096_splice|BAI3_uc011dxx.1_Splice_Site_p.M302_splice|BAI3_uc003pex.1_Splice_Site_p.M226_splice	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3						negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GGTCTCAACAGGGCGTCTCTT	0.478													67	19					0	0	0.139131	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904938	73904938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:73904938C>T	uc003pgk.2	+	14	2947	c.2600C>T	c.(2599-2601)TCC>TTC	p.S867F	KCNQ5_uc011dyh.1_Missense_Mutation_p.S886F|KCNQ5_uc011dyi.1_Missense_Mutation_p.S877F|KCNQ5_uc010kat.2_Missense_Mutation_p.S858F|KCNQ5_uc011dyj.1_Missense_Mutation_p.S757F|KCNQ5_uc011dyk.1_Missense_Mutation_p.S617F	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	867					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGGAGGGAATCCAAATTGTTT	0.498													22	10					0	0	0.062417	0	0
SNAP91	9892	broad.mit.edu	37	6	84303409	84303409	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:84303409A>G	uc011dze.1	-	17	1801	c.1484T>C	c.(1483-1485)CTC>CCC	p.L495P	SNAP91_uc011dzd.1_5'UTR|SNAP91_uc003pkb.2_Missense_Mutation_p.L458P|SNAP91_uc003pkc.2_Missense_Mutation_p.L493P|SNAP91_uc003pkd.2_Intron|SNAP91_uc003pka.2_Missense_Mutation_p.L493P	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	495	Ala-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		CATTGCAAAGAGGTCCAGCTC	0.473													19	5					0	0	0.043863	0	0
GJA10	84694	broad.mit.edu	37	6	90604507	90604507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:90604507G>A	uc011eaa.1	+	1	320	c.320G>A	c.(319-321)AGG>AAG	p.R107K		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	107	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		GAGAAAGACAGGCAGAGGAAA	0.458													21	6					0	0	0.062417	0	0
SFRS18	25957	broad.mit.edu	37	6	99851718	99851719	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:99851718_99851719GG>AA	uc003ppo.3	-	10	1370_1371	c.1142_1143CC>TT	c.(1141-1143)TCC>TTT	p.S381F	SFRS18_uc003ppl.2_5'Flank|SFRS18_uc003ppp.3_Missense_Mutation_p.S381F|SFRS18_uc011eag.1_Missense_Mutation_p.S381F	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	381						nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		GTCCAGTGAGGGAAGCCAGTGC	0.426													14	4					0	0	0.115264	0	0
SIM1	6492	broad.mit.edu	37	6	100841684	100841684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:100841684G>A	uc003pqj.3	-	10	1456	c.1249C>T	c.(1249-1251)CCG>TCG	p.P417S	SIM1_uc010kcu.2_Missense_Mutation_p.P417S	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	417	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		AGAAGCTGCGGAGAGGCCGTG	0.587													17	5					0	0	0.146539	0	0
ASCC3	10973	broad.mit.edu	37	6	101075584	101075584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:101075584C>T	uc003pqk.2	-	29	4853	c.4524G>A	c.(4522-4524)ATG>ATA	p.M1508I		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	1508	Helicase ATP-binding 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		TAAACAAGCCCATCTAGAGTA	0.353													7	3					0	0	0.038147	0	0
AIM1	202	broad.mit.edu	37	6	106973044	106973044	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:106973044C>G	uc003prh.2	+	3	3545	c.3058C>G	c.(3058-3060)CGA>GGA	p.R1020G		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1020							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		ACTCAATCCCCGACCTGGAAA	0.368													21	6					0	0	0.055883	0	0
SOBP	55084	broad.mit.edu	37	6	107955660	107955660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:107955660C>T	uc003prx.2	+	6	2116	c.1612C>T	c.(1612-1614)CCC>TCC	p.P538S		NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	538	Pro-rich.						metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		GGTGCCCATCCCCATCCCCAT	0.667													12	4					0	0	0.038395	0	0
GJA1	2697	broad.mit.edu	37	6	121768817	121768817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:121768817C>T	uc003pyr.2	+	2	1074	c.824C>T	c.(823-825)ACC>ATC	p.T275I	GJA1_uc011ebo.1_Missense_Mutation_p.T176I|GJA1_uc011ebp.1_Missense_Mutation_p.T63I	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	275	Cytoplasmic (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	TCCTCACCAACCGCTCCCCTC	0.517													23	11					0	0	0.083992	0	0
CLVS2	134829	broad.mit.edu	37	6	123318986	123318986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:123318986G>A	uc003pzi.1	+	2	933	c.64G>A	c.(64-66)GAA>AAA	p.E22K		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	22					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GGAGCTCAATGAAAACCCAGA	0.542													21	7					0	0	0.055883	0	0
LAMA2	3908	broad.mit.edu	37	6	129371128	129371128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:129371128G>A	uc003qbn.2	+	2	283	c.178G>A	c.(178-180)GAA>AAA	p.E60K	LAMA2_uc003qbo.2_Missense_Mutation_p.E60K	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	60	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AACATGTGGAGAAAAAGGACC	0.453													20	7					0	0	0.049695	0	0
LAMA2	3908	broad.mit.edu	37	6	129714402	129714402	+	Splice_Site	SNP	T	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:129714402T>A	uc003qbn.2	+	37	5550	c.5445_splice	c.e37+2	p.E1815_splice	LAMA2_uc003qbo.2_Splice_Site_p.E1815_splice	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor						cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GCATTGGAGGTGAGTCTTAGG	0.428													13	4					0	0	0.105934	0	0
C6orf191	253582	broad.mit.edu	37	6	130152480	130152480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:130152480G>A	uc003qbs.2	-	5	454	c.371C>T	c.(370-372)TCA>TTA	p.S124L		NM_001010876	NP_001010876	Q5VVB8	CF191_HUMAN	hypothetical protein LOC253582	124						integral to membrane				large_intestine(1)	1				GBM - Glioblastoma multiforme(226;0.0387)|all cancers(137;0.115)|OV - Ovarian serous cystadenocarcinoma(155;0.131)		AAGCAATTTTGATATACCTAA	0.269													22	5					0	0	0.108266	0	0
UTRN	7402	broad.mit.edu	37	6	144801043	144801043	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:144801043C>T	uc003qkt.2	+	25	3524	c.3432C>T	c.(3430-3432)GCC>GCT	p.A1144A	UTRN_uc010khq.1_Silent_p.A1144A	NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1144	Spectrin 8.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		TGACCCAGGCCGAGGAAGAAT	0.483													25	15					0	0	0.099896	0	0
SYNJ2	8871	broad.mit.edu	37	6	158497676	158497676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:158497676G>A	uc003qqx.1	+	17	2386	c.2311G>A	c.(2311-2313)GAA>AAA	p.E771K	SYNJ2_uc003qqw.1_Missense_Mutation_p.E771K|SYNJ2_uc003qqy.1_Missense_Mutation_p.E484K|SYNJ2_uc003qqz.1_Missense_Mutation_p.E388K|SYNJ2_uc003qra.1_Missense_Mutation_p.E114K	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	771	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		GGACTTTCACGAAGGAGCCAT	0.463													28	13					0	0	0.054565	0	0
MAS1	4142	broad.mit.edu	37	6	160328869	160328869	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr6:160328869C>T	uc003qsz.2	+	1	896	c.882C>T	c.(880-882)TCC>TCT	p.S294S		NM_002377	NP_002368	P04201	MAS_HUMAN	MAS1 oncogene	294	Cytoplasmic (Potential).				anatomical structure morphogenesis|cell proliferation|protein kinase C signaling cascade	integral to plasma membrane	angiotensin type II receptor activity			ovary(2)|lung(2)	4		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.6e-06)		TCAAGGAGTCCTTAAAAGTTG	0.438													33	15					0	0	0.059317	0	0
INTS1	26173	broad.mit.edu	37	7	1542572	1542572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:1542572G>A	uc003skn.2	-	3	415	c.314C>T	c.(313-315)CCG>CTG	p.P105L	INTS1_uc003skq.2_Missense_Mutation_p.P105L	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	105					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		TTTAATCGACGGAGAAATGGC	0.577													62	79					0	0	0.139131	0	0
PSMG3	84262	broad.mit.edu	37	7	1607429	1607429	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:1607429T>G	uc003skx.2	-	2	928	c.274A>C	c.(274-276)AAC>CAC	p.N92H	PSMG3_uc011jvx.1_Missense_Mutation_p.N92H|KIAA1908_uc003sla.2_5'Flank|KIAA1908_uc003sky.1_5'Flank|KIAA1908_uc003skz.1_5'Flank	NM_032302	NP_115678	Q9BT73	PSMG3_HUMAN	proteasome assembling chaperone 3	92											0		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.63e-15)		ACTGCTCTGTTTCCAGCTTCT	0.537													24	24					0	0	0.125774	0	0
SDK1	221935	broad.mit.edu	37	7	4107559	4107559	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:4107559A>G	uc003smx.2	+	20	3140	c.3001A>G	c.(3001-3003)ATC>GTC	p.I1001V	SDK1_uc010kso.2_Missense_Mutation_p.I277V	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1001	Fibronectin type-III 4.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GAAAAATGGCATCATTACTGG	0.448													4	12					0	0	0.014758	0	0
SDK1	221935	broad.mit.edu	37	7	4153058	4153059	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:4153058_4153059GG>AA	uc003smx.2	+	24	3711_3712	c.3572_3573GG>AA	c.(3571-3573)CGG>CAA	p.R1191Q	SDK1_uc010kso.2_Missense_Mutation_p.R467Q	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1191	Fibronectin type-III 6.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		ACCAGCCTGCGGCTTCGCTGGG	0.639													51	76					0	0	0.115264	0	0
SDK1	221935	broad.mit.edu	37	7	4277376	4277376	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:4277376C>T	uc003smx.2	+	42	6229	c.6090C>T	c.(6088-6090)GTC>GTT	p.V2030V	SDK1_uc010kso.2_Silent_p.V1286V|SDK1_uc003smy.2_Silent_p.V517V|SDK1_uc003smz.2_Silent_p.V90V	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	2030	Extracellular (Potential).|Helical; (Potential).				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TCGCCCTCGTCCTGCACGGGC	0.572													32	51					0	0	0.064281	0	0
RADIL	55698	broad.mit.edu	37	7	4874663	4874663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:4874663C>T	uc003snj.1	-	4	1164	c.991G>A	c.(991-993)GAG>AAG	p.E331K	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_5'Flank|RADIL_uc011jwc.1_Missense_Mutation_p.E91K|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	331	FHA.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		TGCCCCACCTCGGAGAAGTTG	0.706													5	9					0	0	0.021553	0	0
FBXL18	80028	broad.mit.edu	37	7	5545151	5545151	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:5545151G>A	uc003soo.2	-	2	223	c.129C>T	c.(127-129)GTC>GTT	p.V43V	FBXL18_uc003son.3_Silent_p.V43V	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	43	F-box.									central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		CTGTGCTGGGGACGTGACTCA	0.567													32	35					0	0	0.054565	0	0
C7orf28A	51622	broad.mit.edu	37	7	5949727	5949727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:5949727C>T	uc003spf.2	+	8	850	c.760C>T	c.(760-762)CCA>TCA	p.P254S		NM_015622	NP_056437	P86791	CCZ1_HUMAN	hypothetical protein LOC51622	254						lysosomal membrane					0		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0974)|OV - Ovarian serous cystadenocarcinoma(56;7.91e-15)		CTCCCTTTTTCCAAGGCACAT	0.473													30	49					0	0	0.074837	0	0
ARL4A	10124	broad.mit.edu	37	7	12728093	12728093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:12728093C>T	uc003ssp.2	+	2	491	c.214C>T	c.(214-216)CAC>TAC	p.H72Y	ARL4A_uc003ssq.2_Missense_Mutation_p.H72Y|ARL4A_uc003ssr.2_Missense_Mutation_p.H72Y|ARL4A_uc003sss.2_Missense_Mutation_p.H72Y	NM_001037164	NP_001032241	P40617	ARL4A_HUMAN	ADP-ribosylation factor-like 4A	72					small GTPase mediated signal transduction	cytoplasm|nucleolus|plasma membrane	GTP binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.176)		AGTCACTTTTCACTTCTGGGA	0.398													15	38					0	0	0.038395	0	0
ETV1	2115	broad.mit.edu	37	7	13971334	13971334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:13971334G>A	uc011jxq.1	-	9	1334	c.595C>T	c.(595-597)CCT>TCT	p.P199S	ETV1_uc011jxn.1_Missense_Mutation_p.P159S|ETV1_uc011jxo.1_Missense_Mutation_p.P96S|ETV1_uc011jxp.1_Missense_Mutation_p.P141S|ETV1_uc003ssw.3_Missense_Mutation_p.P199S|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.P181S|ETV1_uc011jxs.1_Missense_Mutation_p.P181S|ETV1_uc010ktv.2_Missense_Mutation_p.P68S	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	199					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						GTCGGCAAAGGAGGAAAGGAG	0.478			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								13	28					0	0	0.093190	0	0
SOSTDC1	25928	broad.mit.edu	37	7	16505263	16505263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:16505263G>A	uc003stg.2	-	1	212	c.31C>T	c.(31-33)CTT>TTT	p.L11F	SOSTDC1_uc003sth.2_Missense_Mutation_p.L11F	NM_015464	NP_056279	Q6X4U4	SOSD1_HUMAN	sclerostin domain containing 1 precursor	11				FYLLPLA -> LSLIPLL (in Ref. 3; AAQ83296).	Wnt receptor signaling pathway					ovary(2)|central_nervous_system(1)	3	Lung NSC(10;0.185)			UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		GCAAGGGGAAGGAGATAGAAA	0.423													18	24					0	0	0.038395	0	0
HDAC9	9734	broad.mit.edu	37	7	18975549	18975549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:18975549C>T	uc003suh.2	+	22	2953	c.2912C>T	c.(2911-2913)GCC>GTC	p.A971V	HDAC9_uc003sue.2_Missense_Mutation_p.A971V|HDAC9_uc003sui.2_Missense_Mutation_p.A974V|HDAC9_uc003suj.2_Missense_Mutation_p.A930V|HDAC9_uc003suk.2_Missense_Mutation_p.A219V	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	971	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TGTGTAAATGCCCTTCTAGGA	0.408													49	60					0	0	0.139131	0	0
MACC1	346389	broad.mit.edu	37	7	20193832	20193832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:20193832C>T	uc003sus.3	-	6	2639	c.2330G>A	c.(2329-2331)GGA>GAA	p.G777E	MACC1_uc010kug.2_Missense_Mutation_p.G777E	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	777					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						AGCAACATCTCCAGTGTTTCC	0.408													31	42					0	0	0.054565	0	0
SCRN1	9805	broad.mit.edu	37	7	29980343	29980343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:29980343G>A	uc010kvp.2	-	4	898	c.694C>T	c.(694-696)CAT>TAT	p.H232Y	SCRN1_uc011jzy.1_Missense_Mutation_p.H164Y|SCRN1_uc003tak.2_Missense_Mutation_p.H232Y|SCRN1_uc011jzz.1_Missense_Mutation_p.H232Y|SCRN1_uc011kaa.1_Missense_Mutation_p.H252Y|SCRN1_uc011jzw.1_Intron|SCRN1_uc011jzx.1_Missense_Mutation_p.H55Y	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	232					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						CAGTCTAGATGATCCTCAACT	0.498													40	57					0	0	0.104719	0	0
VPS41	27072	broad.mit.edu	37	7	38785191	38785191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:38785191C>T	uc003tgy.2	-	23	1975	c.1949G>A	c.(1948-1950)AGA>AAA	p.R650K	VPS41_uc003tgz.2_Missense_Mutation_p.R625K|VPS41_uc010kxn.2_Missense_Mutation_p.R561K|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	650	Clathrin.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						TACAAAGTTTCTCTGTTGACA	0.328													38	58					0	0	0.124865	0	0
POU6F2	11281	broad.mit.edu	37	7	39504141	39504141	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:39504141G>A	uc003thb.1	+	10	1974	c.1932G>A	c.(1930-1932)CTG>CTA	p.L644L		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	644	Homeobox (By similarity).				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CTGAGAAGCTGAACTATGACC	0.502													6	14					0	0	0.038147	0	0
Unknown	0	broad.mit.edu	37	7	39873373	39873374	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:39873373_39873374CC>TT	uc010kxp.2	+	1	561_562	c.204_205CC>TT	c.(202-207)GACCTT>GATTTT	p.L69F						SubName: Full=Similar to sequence-specific single-stranded-DNA-binding protein;																		TATTTGGGGACCTTTACTGTGC	0.495													17	27					0	0	0.115264	0	0
OGDH	4967	broad.mit.edu	37	7	44747488	44747488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:44747488C>T	uc003tln.2	+	23	3071	c.2962C>T	c.(2962-2964)CGG>TGG	p.R988W	OGDH_uc011kbx.1_Missense_Mutation_p.R984W|OGDH_uc011kby.1_Missense_Mutation_p.R838W|OGDH_uc003tlp.2_Missense_Mutation_p.R999W|OGDH_uc011kbz.1_Missense_Mutation_p.R783W	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	988					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	GTATGCCGGCCGGGACCCAGC	0.647													22	36					0	0	0.076483	0	0
CCM2	83605	broad.mit.edu	37	7	45113982	45113982	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:45113982G>A	uc003tmo.2	+	9	1175	c.1029G>A	c.(1027-1029)GGG>GGA	p.G343G	CCM2_uc003tmn.2_RNA|CCM2_uc003tmp.2_Silent_p.G285G|CCM2_uc003tmq.2_RNA|CCM2_uc003tmr.2_Silent_p.G252G|CCM2_uc003tms.2_Silent_p.G364G	NM_031443	NP_113631	Q9BSQ5	CCM2_HUMAN	cerebral cavernous malformation 2 isoform 2	343					endothelial tube morphogenesis|integrin-mediated signaling pathway|stress-activated MAPK cascade|vasculogenesis	cytoplasm	protein binding				0						AGCTCTACGGGGACAGCCGCA	0.587									Familial_Cerebral_Cavernous_Angioma				7	14					0	0	0.038147	0	0
PKD1L1	168507	broad.mit.edu	37	7	47917094	47917094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:47917094C>T	uc003tny.1	-	22	3656	c.3656G>A	c.(3655-3657)GGA>GAA	p.G1219E		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1219	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TACCGGTTTTCCAGACATGCA	0.577													31	50					0	0	0.064281	0	0
ZNF679	168417	broad.mit.edu	37	7	63726696	63726696	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:63726696A>G	uc003tsx.2	+	5	954	c.685A>G	c.(685-687)AAA>GAA	p.K229E		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	229	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AACCCTTTCTAAACATAAAAG	0.398													7	12					0	0	0.029380	0	0
ZNF107	51427	broad.mit.edu	37	7	64167242	64167242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:64167242C>T	uc003ttd.2	+	7	1346	c.560C>T	c.(559-561)CCC>CTC	p.P187L	ZNF107_uc003tte.2_Missense_Mutation_p.P187L	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	187					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				GAAGAGAAACCCAACAAATGT	0.368													21	39					0	0	0.055883	0	0
VKORC1L1	154807	broad.mit.edu	37	7	65419115	65419115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:65419115C>T	uc003tul.2	+	3	461	c.359C>T	c.(358-360)TCG>TTG	p.S120L	VKORC1L1_uc011kds.1_Silent_p.V83V|VKORC1L1_uc003tum.1_5'Flank	NM_173517	NP_775788	Q8N0U8	VKORL_HUMAN	vitamin K epoxide reductase complex, subunit	120	Helical; (Potential).					integral to membrane					0		Lung NSC(55;0.197)			Menadione(DB00170)|Warfarin(DB00682)	TCCATCATGTCGGTCGTGGGG	0.542													31	34					0	0	0.045705	0	0
BAZ1B	9031	broad.mit.edu	37	7	72892500	72892500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:72892500G>A	uc003tyc.2	-	7	1636	c.1291C>T	c.(1291-1293)CCT>TCT	p.P431S		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	431	Lys-rich.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				TTGGTTTTAGGAGTCTTCAGT	0.483													28	45					0	0	0.125774	0	0
MLXIPL	51085	broad.mit.edu	37	7	73009996	73009996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:73009996G>A	uc003tyn.1	-	15	2329	c.2281C>T	c.(2281-2283)CGT>TGT	p.R761C	MLXIPL_uc003tyj.1_Missense_Mutation_p.R140C|MLXIPL_uc003tyk.1_Missense_Mutation_p.R740C|MLXIPL_uc003tyl.1_Missense_Mutation_p.R759C|MLXIPL_uc003tym.1_Missense_Mutation_p.R742C|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.R667C	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	761					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				TGCAGCGTACGGGTTCGGACG	0.632													11	21					0	0	0.105934	0	0
POR	5447	broad.mit.edu	37	7	75583414	75583414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:75583414C>T	uc003udy.2	+	2	186	c.104C>T	c.(103-105)TCG>TTG	p.S35L		NM_000941	NP_000932	P16435	NCPR_HUMAN	cytochrome P450 reductase	32					cellular organofluorine metabolic process|positive regulation of monooxygenase activity	endoplasmic reticulum membrane	iron ion binding|NADPH-hemoprotein reductase activity			central_nervous_system(1)	1					Benzphetamine(DB00865)|Daunorubicin(DB00694)|Lipoic Acid(DB00166)|Menadione(DB00170)|Methoxyflurane(DB01028)|Mitomycin(DB00305)|Nilutamide(DB00665)	ATTCTGTTTTCGCTCATCGTG	0.502													6	9					0	0	0.029380	0	0
CCDC146	57639	broad.mit.edu	37	7	76797119	76797119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:76797119C>T	uc003uga.2	+	2	261	c.134C>T	c.(133-135)CCA>CTA	p.P45L	CCDC146_uc003ufz.1_Missense_Mutation_p.P45L	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	45										ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				TCTGAAACTCCAGCTTTCATT	0.343													8	64					0	0	0.093190	0	0
PCLO	27445	broad.mit.edu	37	7	82585618	82585618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:82585618C>T	uc003uhx.2	-	5	4940	c.4651G>A	c.(4651-4653)GAA>AAA	p.E1551K	PCLO_uc003uhv.2_Missense_Mutation_p.E1551K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1482					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCCTCCTCTTCCCCTGATCCT	0.413													31	46					0	0	0.144211	0	0
GRM3	2913	broad.mit.edu	37	7	86468384	86468384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:86468384G>A	uc003uid.2	+	4	2653	c.1554G>A	c.(1552-1554)ATG>ATA	p.M518I	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.M390I|GRM3_uc010leh.2_Missense_Mutation_p.M110I	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	518	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CCAATGAAATGAAGAATATGC	0.522													30	50					0	0	0.125774	0	0
SLC25A40	55972	broad.mit.edu	37	7	87476383	87476383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:87476383G>A	uc003uje.2	-	8	863	c.512C>T	c.(511-513)TCC>TTC	p.S171F		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	171	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					AAACTTCTTGGACTGCATCTT	0.383													53	100					0	0	0.139131	0	0
CDK14	5218	broad.mit.edu	37	7	90613509	90613509	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:90613509T>C	uc003uky.2	+	10	1216	c.994T>C	c.(994-996)TTT>CTT	p.F332L	CDK14_uc003ukz.1_Missense_Mutation_p.F314L|CDK14_uc010les.1_Missense_Mutation_p.F286L|CDK14_uc011khl.1_Missense_Mutation_p.F203L	NM_012395	NP_036527	O94921	CDK14_HUMAN	PFTAIRE protein kinase 1	332	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			lung(3)|ovary(1)	4						AGTTGCTGCTTTTCCAGGAAT	0.348													58	75					0	0	0.139131	0	0
AKAP9	10142	broad.mit.edu	37	7	91714235	91714235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:91714235C>T	uc003ulg.2	+	35	9038	c.8813C>T	c.(8812-8814)TCC>TTC	p.S2938F	AKAP9_uc003ulf.2_Missense_Mutation_p.S2930F|AKAP9_uc003uli.2_Missense_Mutation_p.S2561F|AKAP9_uc003ulj.2_Missense_Mutation_p.S708F|AKAP9_uc003ulk.2_Missense_Mutation_p.S213F	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2942					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GCAACAGATTCCTTTCCAAAG	0.378			T	BRAF	papillary thyroid								39	57					0	0	0.086207	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764235	92764235	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:92764235C>T	uc003umh.1	-	5	2266	c.1050G>A	c.(1048-1050)AGG>AGA	p.R350R	SAMD9L_uc003umj.1_Silent_p.R350R|SAMD9L_uc003umi.1_Silent_p.R350R|SAMD9L_uc010lfb.1_Silent_p.R350R|SAMD9L_uc003umk.1_Silent_p.R350R|SAMD9L_uc010lfc.1_Silent_p.R350R|SAMD9L_uc010lfd.1_Silent_p.R350R|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	350										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CCAGGATATCCCTAGAGCTAG	0.353													66	78					0	0	0.139131	0	0
CYP3A5	1577	broad.mit.edu	37	7	99270254	99270254	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:99270254C>T	uc003urq.2	-	4	354	c.267G>A	c.(265-267)GTG>GTA	p.V89V	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urr.2_5'UTR|CYP3A5_uc011kiy.1_Silent_p.V79V|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron|CYP3A5_uc003urt.2_Silent_p.V89V	NM_000777	NP_000768	P20815	CP3A5_HUMAN	cytochrome P450, family 3, subfamily A,	89					alkaloid catabolic process|drug catabolic process|oxidative demethylation|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0	all_epithelial(64;2.77e-08)|Lung NSC(181;0.00396)|all_lung(186;0.00659)|Esophageal squamous(72;0.0166)				Alfentanil(DB00802)|Clopidogrel(DB00758)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Indinavir(DB00224)|Irinotecan(DB00762)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Mephenytoin(DB00532)|Midazolam(DB00683)|Mifepristone(DB00834)|Phenytoin(DB00252)|Quinine(DB00468)|Saquinavir(DB01232)|Tacrolimus(DB00864)|Troleandomycin(DB01361)|Verapamil(DB00661)|Vincristine(DB00541)	CTGTTCTGATCACGTCGGGAT	0.423													76	98					0	0	0.139131	0	0
Unknown	0	broad.mit.edu	37	7	100551575	100551575	+	RNA	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:100551575G>A	uc003uxk.1	+	1		c.826G>A			uc003uxl.1_Missense_Mutation_p.R9K					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		ATGACCCTCAGAATTACTGAG	0.488													101	134					0	0	0.139131	0	0
Unknown	0	broad.mit.edu	37	7	100552243	100552243	+	RNA	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:100552243C>T	uc003uxk.1	+	1		c.1494C>T			uc003uxl.1_Missense_Mutation_p.P232S					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TACCATAGTCCCTGCCTCTCC	0.478													53	245					0	0	0.139131	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117358151	117358151	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:117358151A>G	uc003vjf.2	-	22	4759	c.4667T>C	c.(4666-4668)TTA>TCA	p.L1556S		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1556										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		AAACATCCTTAAATCATCCCT	0.423													19	23					0	0	0.055883	0	0
GRM8	2918	broad.mit.edu	37	7	126249504	126249504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:126249504C>T	uc003vlr.2	-	7	1717	c.1406G>A	c.(1405-1407)GGA>GAA	p.G469E	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.G469E|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	469	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	ATCATAACGTCCAGGAGCATC	0.388										HNSCC(24;0.065)			27	30					0	0	0.099896	0	0
SND1	27044	broad.mit.edu	37	7	127344916	127344916	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:127344916C>T	uc003vmi.2	+	8	1090	c.864C>T	c.(862-864)CTC>CTT	p.L288L		NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	288	TNase-like 2.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						CAGAGCTCCTCCTGAAGGAAG	0.502													17	20					0	0	0.043863	0	0
FAM71F2	346653	broad.mit.edu	37	7	128315775	128315775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:128315775C>T	uc003vnk.3	+	2	333	c.227C>T	c.(226-228)ACC>ATC	p.T76I	FAM71F2_uc010llm.1_Missense_Mutation_p.T67I|FAM71F2_uc003vnl.2_RNA|FAM71F2_uc010lln.1_RNA	NM_001012454	NP_001012457	Q6NXP2	F71F2_HUMAN	hypothetical protein LOC346653 isoform a	76											0						GGGTCTGCCACCGTGATCCTC	0.587													20	23					0	0	0.083992	0	0
C7orf45	136263	broad.mit.edu	37	7	129847778	129847778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:129847778G>A	uc003vpp.2	+	1	75	c.28G>A	c.(28-30)GAG>AAG	p.E10K	TMEM209_uc003vpn.2_5'Flank|TMEM209_uc010lmc.1_5'Flank|TMEM209_uc003vpo.2_5'Flank	NM_145268	NP_660311	Q8WWF3	CG045_HUMAN	hypothetical protein LOC136263	10						integral to membrane					0	Melanoma(18;0.0435)					CTTATTTTGGGAGGTAGATCC	0.433													47	47					0	0	0.139131	0	0
CPA4	51200	broad.mit.edu	37	7	129945666	129945666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:129945666G>A	uc003vpr.2	+	6	544	c.497G>A	c.(496-498)GGG>GAG	p.G166E	CPA4_uc011kpd.1_Missense_Mutation_p.G133E|CPA4_uc011kpe.1_Missense_Mutation_p.G62E	NM_016352	NP_057436	Q9UI42	CBPA4_HUMAN	carboxypeptidase A4 preproprotein	166					histone acetylation|proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					TTCAGCACTGGGAAAGGCGTG	0.562													25	24					0	0	0.099896	0	0
WEE2	494551	broad.mit.edu	37	7	141420806	141420806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:141420806C>T	uc003vwn.2	+	5	1236	c.830C>T	c.(829-831)TCC>TTC	p.S277F	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	277	Protein kinase.				egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					CGTTACTATTCCTCATGGGCA	0.403													32	61					0	0	0.054565	0	0
OR9A4	130075	broad.mit.edu	37	7	141619380	141619380	+	Silent	SNP	G	A	A	rs143629932		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:141619380G>A	uc003vwu.1	+	1	705	c.705G>A	c.(703-705)AGG>AGA	p.R235R		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R235R(1)		skin(1)	1	Melanoma(164;0.0171)					CTGGCCGGAGGAAATCCTTCT	0.502													40	54					0	0	0.139131	0	0
MGAM	8972	broad.mit.edu	37	7	141732641	141732641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:141732641C>T	uc003vwy.2	+	14	1655	c.1601C>T	c.(1600-1602)TCC>TTC	p.S534F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	534	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AATGAAGTCTCCAACTTTGTT	0.363													5	12					0	0	0.014758	0	0
TRY6	154754	broad.mit.edu	37	7	142481855	142481855	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:142481855G>A	uc011ksq.1	+	4	617	c.534G>A	c.(532-534)AAG>AAA	p.K178K	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						ACCCTTTAAAGATTACCAGCA	0.527													52	71					0	0	0.139131	0	0
KEL	3792	broad.mit.edu	37	7	142655421	142655421	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:142655421C>T	uc003wcb.2	-	5	705	c.495G>A	c.(493-495)GGG>GGA	p.G165G		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	165	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GGGGACCAGTCCCTGCAGCTT	0.488													32	82					0	0	0.050027	0	0
OR9A2	135924	broad.mit.edu	37	7	142723947	142723947	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:142723947C>T	uc003wcc.1	-	1	273	c.273G>A	c.(271-273)CAG>CAA	p.Q91Q		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					GAGAAAGATACTGTCTGCATC	0.483													20	25					0	0	0.049695	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147674960	147674960	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:147674960G>A	uc003weu.1	+	15	2778	c.2262G>A	c.(2260-2262)AAG>AAA	p.K754K		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	754	Extracellular (Potential).|Fibrinogen C-terminal.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCAGGAGGAAGGATGCTGGTT	0.443										HNSCC(39;0.1)			18	38					0	0	0.062417	0	0
ZNF786	136051	broad.mit.edu	37	7	148768906	148768906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:148768906G>A	uc003wfh.2	-	4	1095	c.958C>T	c.(958-960)CGG>TGG	p.R320W	ZNF786_uc011kuk.1_Missense_Mutation_p.R283W|ZNF786_uc003wfi.2_Missense_Mutation_p.R234W	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	320					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GGCCCCTCCCGGCTGTGCTGG	0.721													3	5					0	0	0.009096	0	0
SSPO	23145	broad.mit.edu	37	7	149516521	149516521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:149516521C>T	uc010lpk.2	+	85	11924	c.11924C>T	c.(11923-11925)CCC>CTC	p.P3975L	SSPO_uc010lpm.1_5'Flank|SSPO_uc003wgg.2_5'Flank|SSPO_uc003wgh.2_5'Flank|SSPO_uc003wgi.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3975	TSP type-1 17.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCATACCGTCCCCCTGGGCCC	0.706													8	16					0	0	0.038147	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217656	150217657	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:150217656_150217657GG>AA	uc003whk.2	+	2	724_725	c.594_595GG>AA	c.(592-597)GGGGCT>GGAACT	p.A199T		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	199							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCAACGAAGGGGCTTACTTTTC	0.431													26	52					0	0	0.115264	0	0
NOS3	4846	broad.mit.edu	37	7	150699372	150699372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:150699372G>A	uc003wif.2	+	14	2028	c.1732G>A	c.(1732-1734)GAT>AAT	p.D578N	NOS3_uc011kuy.1_Missense_Mutation_p.D372N|NOS3_uc011kuz.1_Missense_Mutation_p.D578N|NOS3_uc011kva.1_Missense_Mutation_p.D578N|NOS3_uc011kvb.1_Missense_Mutation_p.D578N	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	578	Flavodoxin-like.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	TGGGAATGGGGATCCCCCGGA	0.562													6	8					0	0	0.029380	0	0
CSMD1	64478	broad.mit.edu	37	8	2823345	2823345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:2823345G>A	uc011kwk.1	-	59	9625	c.9235C>T	c.(9235-9237)CGC>TGC	p.R3079C	CSMD1_uc011kwj.1_Missense_Mutation_p.R2408C|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3079	Extracellular (Potential).|Sushi 24.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTGGTACAGCGAATAGTGGCG	0.458													6	7					0	0	0.029380	0	0
CSMD1	64478	broad.mit.edu	37	8	3087727	3087727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:3087727G>A	uc011kwk.1	-	27	4573	c.4183C>T	c.(4183-4185)CCA>TCA	p.P1395S	CSMD1_uc011kwj.1_Missense_Mutation_p.P787S|CSMD1_uc003wqe.2_Missense_Mutation_p.P551S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1395	Extracellular (Potential).|Sushi 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGCATACCTGGATCGTTACAG	0.522													3	11					0	0	0.115264	0	0
SGK223	157285	broad.mit.edu	37	8	8185920	8185920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:8185920G>A	uc003wsh.3	-	4	2372	c.2372C>T	c.(2371-2373)CCC>CTC	p.P791L		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	791							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						AAACGGAACGGGAGCAAAGAG	0.607													17	17					0	0	0.146539	0	0
MTUS1	57509	broad.mit.edu	37	8	17513392	17513392	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:17513392T>C	uc003wxv.2	-	9	3562	c.3088A>G	c.(3088-3090)AAA>GAA	p.K1030E	MTUS1_uc003wxt.2_Missense_Mutation_p.K277E|MTUS1_uc011kyg.1_Missense_Mutation_p.K175E|MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Missense_Mutation_p.K976E|MTUS1_uc003wxs.2_Missense_Mutation_p.K196E	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	1030	Potential.					Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		AATTGCATTTTGTACTTCTCT	0.453													34	45					0	0	0.080422	0	0
KIAA1967	57805	broad.mit.edu	37	8	22470617	22470618	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:22470617_22470618CC>TT	uc003xch.2	+	8	809_810	c.672_673CC>TT	c.(670-675)TACCGG>TATTGG	p.R225W	KIAA1967_uc003xci.2_Missense_Mutation_p.R225W|KIAA1967_uc003xcj.1_5'UTR	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	225					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		TGCCTCCTTACCGGGTCCACCT	0.545													13	32					0	0	0.115264	0	0
ADAM28	10863	broad.mit.edu	37	8	24199208	24199208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:24199208C>T	uc003xdy.2	+	16	1851	c.1768C>T	c.(1768-1770)CCT>TCT	p.P590S	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.P277S	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	590	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AACATTTGATCCTGAAGACAC	0.423													50	65					0	0	0.139131	0	0
ADAM7	8756	broad.mit.edu	37	8	24349506	24349506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:24349506G>A	uc003xeb.2	+	14	1560	c.1447G>A	c.(1447-1449)GAC>AAC	p.D483N	ADAM7_uc003xec.2_Missense_Mutation_p.D255N	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	483	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CTGTCCTAAGGACCAGTTCAG	0.473													57	59					0	0	0.139131	0	0
PPP2R2A	5520	broad.mit.edu	37	8	26196487	26196487	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:26196487T>C	uc003xeu.2	+	3	466	c.164T>C	c.(163-165)TTT>TCT	p.F55S	PPP2R2A_uc003xek.2_Intron|PPP2R2A_uc011laf.1_Missense_Mutation_p.F65S	NM_002717	NP_002708	P63151	2ABA_HUMAN	alpha isoform of regulatory subunit B55, protein	55	WD 1.				protein dephosphorylation|signal transduction	protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity			ovary(1)|kidney(1)	2		all_cancers(63;0.086)|Ovarian(32;2.61e-05)|all_epithelial(46;0.0514)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.000754)|Epithelial(17;3.02e-15)|all cancers(2;1.52e-13)|OV - Ovarian serous cystadenocarcinoma(2;1.89e-10)|Colorectal(74;0.155)		GTTGTCATCTTTCAACAGGAG	0.353													59	70					0	0	0.139131	0	0
PTK2B	2185	broad.mit.edu	37	8	27255116	27255116	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:27255116C>T	uc003xfn.1	+	7	823	c.15C>T	c.(13-15)TCC>TCT	p.S5S	PTK2B_uc003xfo.1_Silent_p.S5S|PTK2B_uc003xfp.1_Silent_p.S5S|PTK2B_uc003xfq.1_Silent_p.S5S	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	5					apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		CTGGGGTGTCCGAGCCCCTGA	0.602													42	39					0	0	0.139131	0	0
CLU	1191	broad.mit.edu	37	8	27462448	27462448	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:27462448G>A	uc003xfw.1	-	4	880	c.822C>T	c.(820-822)TTC>TTT	p.F274F	CLU_uc010lux.1_Silent_p.F139F|CLU_uc003xfx.1_Silent_p.F274F|CLU_uc003xfy.1_Silent_p.F285F|CLU_uc003xfz.1_Silent_p.F326F	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	274					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		CACCTCGTATGAATTCTGTTG	0.383													56	72					0	0	0.139131	0	0
TEX15	56154	broad.mit.edu	37	8	30701209	30701209	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:30701209C>T	uc003xil.2	-	1	5325	c.5325G>A	c.(5323-5325)AGG>AGA	p.R1775R		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1775										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AATTCTTTTCCCTTTTTGTTT	0.318													10	16					0	0	0.058154	0	0
TEX15	56154	broad.mit.edu	37	8	30704454	30704454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:30704454C>T	uc003xil.2	-	1	2080	c.2080G>A	c.(2080-2082)GAT>AAT	p.D694N		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	694										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTATGTGTATCTTGTTGAAAT	0.333													16	35					0	0	0.038395	0	0
FGFR1	2260	broad.mit.edu	37	8	38273437	38273437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:38273437G>A	uc003xlp.2	-	14	2747	c.1805C>T	c.(1804-1806)TCC>TTC	p.S602F	FGFR1_uc010lwf.2_RNA|FGFR1_uc011lbo.1_Missense_Mutation_p.S600F|FGFR1_uc011lbp.1_Missense_Mutation_p.S513F|FGFR1_uc011lbq.1_Missense_Mutation_p.S511F|FGFR1_uc010lwk.2_Missense_Mutation_p.S592F	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	602	Cytoplasmic (Potential).|Protein kinase.				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	GTAGGCGCAGGACACCAGGTC	0.642		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						12	28					0	0	0.093190	0	0
XKR4	114786	broad.mit.edu	37	8	56015094	56015094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:56015094G>A	uc003xsf.2	+	1	78	c.46G>A	c.(46-48)GAC>AAC	p.D16N		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	16						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			GAAAAGCAGCGACGTGGCGTT	0.602													14	14					0	0	0.119110	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228679	57228679	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:57228679C>T	uc003xsy.1	-	2	866	c.228G>A	c.(226-228)GGG>GGA	p.G76G	SDR16C5_uc010lyk.1_Silent_p.G76G|SDR16C5_uc010lyl.1_Silent_p.G76G	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	76					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TTTCCTCATTCCCCTCCTTAT	0.522													47	58					0	0	0.131918	0	0
NSMAF	8439	broad.mit.edu	37	8	59508133	59508133	+	Silent	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:59508133A>G	uc003xtt.2	-	22	2092	c.1878T>C	c.(1876-1878)TAT>TAC	p.Y626Y	NSMAF_uc011lee.1_Silent_p.Y657Y	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	626					ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				TGTGGATTTTATAGTGCTCGT	0.423													19	29					0	0	0.069288	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66992756	66992756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:66992756G>A	uc003xvs.1	+	5	769	c.478G>A	c.(478-480)GAG>AAG	p.E160K	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	160					protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			GGATCTGGAGGAGCAGATCAA	0.468													5	9					0	0	0.014758	0	0
PREX2	80243	broad.mit.edu	37	8	68956771	68956771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:68956771C>T	uc003xxv.1	+	8	916	c.889C>T	c.(889-891)CGT>TGT	p.R297C	PREX2_uc003xxu.1_Missense_Mutation_p.R297C|PREX2_uc011lez.1_Missense_Mutation_p.R232C	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	297	PH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GTACCTTTTTCGTGGCCGGAT	0.398													37	65					0	0	0.086207	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70674078	70674078	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:70674078C>A	uc003xyl.2	-	3	1647	c.940G>T	c.(940-942)GCA>TCA	p.A314S	SLCO5A1_uc010lzb.2_Missense_Mutation_p.A314S|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Missense_Mutation_p.A314S|SLCO5A1_uc010lzc.2_Missense_Mutation_p.A314S	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	314	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			TATCCCACTGCAGGGCCAAGT	0.418													20	19					1.40151e-16	1.48522e-16	0.055883	1	0
NCOA2	10499	broad.mit.edu	37	8	71128914	71128914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:71128914G>A	uc003xyn.1	-	3	229	c.67C>T	c.(67-69)CCT>TCT	p.P23S		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	23	Basic motif.				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			AGTTGGTCAGGACATTCCTTG	0.418			T	RUNXBP2	AML								43	54					0	0	0.139131	0	0
RALYL	138046	broad.mit.edu	37	8	85799935	85799935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:85799935G>A	uc003ycq.3	+	9	1198	c.782G>A	c.(781-783)GGA>GAA	p.G261E	RALYL_uc003ycr.3_Missense_Mutation_p.G261E|RALYL_uc003ycs.3_Missense_Mutation_p.G261E|RALYL_uc010lzy.2_Missense_Mutation_p.G250E|RALYL_uc003yct.3_Missense_Mutation_p.G274E|RALYL_uc003ycu.3_Missense_Mutation_p.G188E|RALYL_uc003ycv.3_Intron	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	261							identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						CCTGCTGAAGGAGGGCCAGAT	0.488													27	52					0	0	0.116897	0	0
SLC26A7	115111	broad.mit.edu	37	8	92301455	92301455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:92301455G>A	uc003yex.2	+	4	563	c.285G>A	c.(283-285)ATG>ATA	p.M95I	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.M95I|SLC26A7_uc003yfa.2_Missense_Mutation_p.M95I	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	95	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TATTTGGAATGGGACATCATG	0.388													43	70					0	0	0.139131	0	0
SLC25A32	81034	broad.mit.edu	37	8	104419988	104419988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:104419988G>A	uc003yll.2	-	2	482	c.179C>T	c.(178-180)CCG>CTG	p.P60L	SLC25A32_uc011lhr.1_5'UTR	NM_030780	NP_110407	Q9H2D1	MFTC_HUMAN	solute carrier family 25, member 32	60	Solcar 1.				folic acid metabolic process|mitochondrial transport	integral to membrane|mitochondrial inner membrane	binding|folic acid transporter activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(57;2.79e-06)|STAD - Stomach adenocarcinoma(118;0.197)		Folic Acid(DB00158)	ATTATATTTCGGTCTCAGTTC	0.403													31	34					0	0	0.045705	0	0
DPYS	1807	broad.mit.edu	37	8	105393486	105393486	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:105393486C>T	uc003yly.3	-	9	1629	c.1500G>A	c.(1498-1500)CTG>CTA	p.L500L	DPYS_uc010mcf.1_Silent_p.L70L	NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	500					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTCTGGATTTCAGTGTGGCGA	0.493													22	32					0	0	0.076483	0	0
CSMD3	114788	broad.mit.edu	37	8	113314061	113314061	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:113314061A>C	uc003ynu.2	-	53	8560	c.8401T>G	c.(8401-8403)TCC>GCC	p.S2801A	CSMD3_uc003yns.2_Missense_Mutation_p.S2003A|CSMD3_uc003ynt.2_Missense_Mutation_p.S2761A|CSMD3_uc011lhx.1_Missense_Mutation_p.S2632A	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2801	Extracellular (Potential).|Sushi 17.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGACCTGAGGAAAGGCATTCC	0.443										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			18	33					0	0	0.069288	0	0
KLHL38	340359	broad.mit.edu	37	8	124658255	124658255	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:124658255C>T	uc003yqs.1	-	3	1494	c.1470G>A	c.(1468-1470)AGG>AGA	p.R490R		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	490	Kelch 5.										0						AAGCAAGAATCCTCCTTGTGT	0.507													20	32					0	0	0.043863	0	0
RNF139	11236	broad.mit.edu	37	8	125499402	125499402	+	Silent	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:125499402A>G	uc003yrc.2	+	2	1855	c.1512A>G	c.(1510-1512)GCA>GCG	p.A504A		NM_007218	NP_009149	Q8WU17	RN139_HUMAN	ring finger protein 139	504	Helical; (Potential).				negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GCCTACATGCATATTTTAACA	0.348									Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				25	51					0	0	0.108266	0	0
ADCY8	114	broad.mit.edu	37	8	131916288	131916288	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:131916288C>T	uc003ytd.3	-	7	1897	c.1641G>A	c.(1639-1641)GGG>GGA	p.G547G	ADCY8_uc010mds.2_Silent_p.G547G	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	547	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TGTGAATCCTCCTGTGTGTAG	0.458										HNSCC(32;0.087)			63	90					0	0	0.139131	0	0
COL22A1	169044	broad.mit.edu	37	8	139701184	139701184	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:139701184C>T	uc003yvd.2	-	37	3285	c.2838G>A	c.(2836-2838)GGG>GGA	p.G946G	COL22A1_uc011ljo.1_Silent_p.G246G	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	946	Pro-rich.|Gly-rich.|Collagen-like 8.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCCCATCTTTCCCTGGGGTGC	0.522										HNSCC(7;0.00092)			42	55					0	0	0.104719	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141301106	141301106	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:141301106G>A	uc003yvj.2	-	12	1974	c.1840C>T	c.(1840-1842)CGA>TGA	p.R614*	TRAPPC9_uc003yvh.2_Nonsense_Mutation_p.R712*|TRAPPC9_uc010mel.1_Nonsense_Mutation_p.R35*|TRAPPC9_uc003yvi.1_Nonsense_Mutation_p.R605*	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	614					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						TTTTCAACTCGAAGTTCAAAC	0.373													21	32					0	0	0.055883	0	0
DENND3	22898	broad.mit.edu	37	8	142202455	142202455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:142202455G>A	uc003yvy.2	+	21	3443	c.3165G>A	c.(3163-3165)ATG>ATA	p.M1055I	DENND3_uc010mep.2_Missense_Mutation_p.M1016I|DENND3_uc003ywa.1_Missense_Mutation_p.M105I|DENND3_uc003ywb.2_Missense_Mutation_p.M105I	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	1055										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TCATGGTCATGAAAATGAATG	0.522													20	39					0	0	0.055883	0	0
GML	2765	broad.mit.edu	37	8	143922636	143922636	+	Missense_Mutation	SNP	C	T	T	rs139347831		TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:143922636C>T	uc003yxg.2	+	3	266	c.176C>T	c.(175-177)TCC>TTC	p.S59F		NM_002066	NP_002057	Q99445	GML_HUMAN	glycosylphosphatidylinositol anchored molecule	59	UPAR/Ly6.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|negative regulation of cell proliferation	anchored to membrane|extrinsic to membrane|plasma membrane				central_nervous_system(2)	2	all_cancers(97;4.26e-11)|all_epithelial(106;1.85e-08)|Lung NSC(106;0.000274)|all_lung(105;0.000755)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					ATGACAATCTCCATTCGTAAG	0.453													21	31					0	0	0.091800	0	0
SCRIB	23513	broad.mit.edu	37	8	144886272	144886272	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:144886272A>T	uc003yzp.1	-	22	3071	c.3064T>A	c.(3064-3066)TCC>ACC	p.S1022T	SCRIB_uc003yzn.1_5'UTR|SCRIB_uc003yzo.1_Missense_Mutation_p.S1022T	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	1022	Interaction with ARHGEF7.|PDZ 3.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			GAATGGTCGGAGCCTCCGACA	0.627													9	11					0	0	0.069234	0	0
EPPK1	83481	broad.mit.edu	37	8	144945250	144945250	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:144945250G>A	uc003zaa.1	-	1	2185	c.2172C>T	c.(2170-2172)ATC>ATT	p.I724I		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	724	Plectin 14.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CGCCCGTGGCGATCTGGGCCT	0.662													28	60					0	0	0.099896	0	0
PLEC	5339	broad.mit.edu	37	8	144995304	144995304	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:144995304G>A	uc003zaf.1	-	32	9266	c.9096C>T	c.(9094-9096)GTC>GTT	p.V3032V	PLEC_uc003zab.1_Silent_p.V2895V|PLEC_uc003zac.1_Silent_p.V2899V|PLEC_uc003zad.2_Silent_p.V2895V|PLEC_uc003zae.1_Silent_p.V2863V|PLEC_uc003zag.1_Silent_p.V2873V|PLEC_uc003zah.2_Silent_p.V2881V|PLEC_uc003zaj.2_Silent_p.V2922V	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3032	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						AGTCAGTGTAGACCAGCTCCC	0.627													31	50					0	0	0.144211	0	0
CYC1	1537	broad.mit.edu	37	8	145151615	145151615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:145151615C>T	uc003zaz.3	+	5	783	c.740C>T	c.(739-741)CCC>CTC	p.P247L	CYC1_uc003zay.2_Missense_Mutation_p.P188L	NM_001916	NP_001907	P08574	CY1_HUMAN	cytochrome c-1	247					respiratory electron transport chain|transport	cell junction|integral to membrane|mitochondrial inner membrane|respiratory chain	electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity|heme binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;8.71e-40)|all cancers(56;3e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ATGGCCCCTCCCATCTACACA	0.582													18	24					0	0	0.043863	0	0
ZNF251	90987	broad.mit.edu	37	8	145948623	145948623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:145948623C>T	uc003zdv.3	-	5	678	c.422G>A	c.(421-423)GGC>GAC	p.G141D		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	141					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		TTTGAGTTTGCCCTCACGGCC	0.468													18	38					0	0	0.049695	0	0
FREM1	158326	broad.mit.edu	37	9	14750169	14750169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:14750169C>T	uc003zlm.2	-	30	6103	c.5513G>A	c.(5512-5514)GGC>GAC	p.G1838D	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_Intron|FREM1_uc003zll.2_Missense_Mutation_p.G374D	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1838					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TGTCTTTGTGCCAAGAACTGC	0.418													44	69					0	0	0.139131	0	0
TAF1L	138474	broad.mit.edu	37	9	32631678	32631678	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:32631678G>A	uc003zrg.1	-	1	3990	c.3900C>T	c.(3898-3900)CTC>CTT	p.L1300L	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1300					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TTTGATAATAGAGGGGGCAGA	0.433													74	98					0	0	0.139131	0	0
ANXA2P2	304	broad.mit.edu	37	9	33625114	33625114	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:33625114G>A	uc010mjx.2	+	1	892	c.843G>A	c.(841-843)AAG>AAA	p.K281K		NM_004039	NP_004030			annexin A2 isoform 2												0						TGAAGGGCAAGGGGACGCGAG	0.478													8	26					0	0	0.047766	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323695	79323695	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:79323695G>A	uc010mpk.2	-	8	3619	c.3495C>T	c.(3493-3495)ACC>ACT	p.T1165T		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1165					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTGTAAATCGGGTTTCCGGCT	0.532													44	67					0	0	0.139131	0	0
PRUNE2	158471	broad.mit.edu	37	9	79461488	79461489	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:79461488_79461489CC>TT	uc010mpk.2	-	4	574_575	c.450_451GG>AA	c.(448-453)AAGGAG>AAAAAG	p.E151K	PRUNE2_uc004akn.2_Missense_Mutation_p.E151K	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	151					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TGGAGAATCTCCTTTAGCACGA	0.475													20	28					0	0	0.115264	0	0
VPS13A	23230	broad.mit.edu	37	9	79933216	79933216	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:79933216C>T	uc004akr.2	+	41	5282	c.5022C>T	c.(5020-5022)ACC>ACT	p.T1674T	VPS13A_uc004akp.3_Silent_p.T1674T|VPS13A_uc004akq.3_Silent_p.T1674T|VPS13A_uc004aks.2_Silent_p.T1635T|VPS13A_uc004akt.2_Silent_p.T14T|VPS13A_uc010mpo.1_Silent_p.T270T	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1674					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						CTAAGGAAACCATCCCAGAAG	0.308													24	58					0	0	0.116897	0	0
TLE4	7091	broad.mit.edu	37	9	82323515	82323515	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:82323515C>T	uc004ald.2	+	14	2001	c.1152C>T	c.(1150-1152)AGC>AGT	p.S384S	TLE4_uc004alc.2_Silent_p.S359S|TLE4_uc010mpr.2_Silent_p.S238S|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Silent_p.S327S|TLE4_uc010mps.2_Silent_p.S283S|TLE4_uc004alf.2_Silent_p.S298S	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						CAGCCTCAAGCCTAAGGACCC	0.468													47	93					0	0	0.139131	0	0
FLJ46321	389763	broad.mit.edu	37	9	84610012	84610012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:84610012C>T	uc004amn.2	+	4	4674	c.4627C>T	c.(4627-4629)CCA>TCA	p.P1543S		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1543						integral to membrane					0						TCCAGCCGTCCCAACCAGTGC	0.527													9	5					0	0	0.047766	0	0
RASEF	158158	broad.mit.edu	37	9	85627427	85627427	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:85627427C>T	uc004amo.1	-	5	1027	c.766_splice	c.e5-1	p.L256_splice		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing						protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						GTTCTTCGAGCTGAAAGACCA	0.318													6	7					0	0	0.038147	0	0
HNRNPK	3190	broad.mit.edu	37	9	86585198	86585199	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:86585198_86585199GG>AA	uc004ang.3	-	16	1463_1464	c.1239_1240CC>TT	c.(1237-1242)ATCCGT>ATTTGT	p.R414C	HNRNPK_uc011lsw.1_Missense_Mutation_p.R174C|HNRNPK_uc004and.3_Missense_Mutation_p.R174C|HNRNPK_uc004ank.3_Missense_Mutation_p.R413C|HNRNPK_uc004anf.3_Missense_Mutation_p.R414C|HNRNPK_uc004anh.3_Missense_Mutation_p.R390C|HNRNPK_uc011lsx.1_Missense_Mutation_p.R390C|HNRNPK_uc004ani.3_Missense_Mutation_p.R413C|HNRNPK_uc004anj.3_Missense_Mutation_p.R413C|HNRNPK_uc004ann.3_Missense_Mutation_p.R389C|HNRNPK_uc004anl.3_Missense_Mutation_p.R414C|HNRNPK_uc004anm.3_Missense_Mutation_p.R414C|uc004ano.1_5'Flank|MIR7-1_hsa-mir-7-1|MI0000263_5'Flank	NM_031262	NP_112552	P61978	HNRPK_HUMAN	heterogeneous nuclear ribonucleoprotein K	414	1-2.|2 X 22 AA approximate repeats.|KH 3.				interspecies interaction between organisms|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of receptor-mediated endocytosis|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of low-density lipoprotein particle clearance|signal transduction	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nuclear chromatin|nucleoplasm	protein binding|RNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|single-stranded DNA binding			skin(1)	1						GACTCATGACGGATTTGTTTAA	0.381													28	29					0	0	0.115264	0	0
C9orf79	286234	broad.mit.edu	37	9	90497933	90497933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:90497933G>A	uc004app.3	+	1	162	c.127G>A	c.(127-129)GAG>AAG	p.E43K	C9orf79_uc004apo.1_Intron	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	43						integral to membrane				ovary(3)	3						ACTTCAGATGGAGAAAATGCT	0.567													14	19					0	0	0.132662	0	0
ANKRD19	138649	broad.mit.edu	37	9	95600017	95600017	+	RNA	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:95600017G>A	uc004ass.2	+	9		c.2101G>A			ANKRD19_uc004asr.3_RNA	NR_026868				Homo sapiens cDNA FLJ36178 fis, clone TESTI2026534.												0						GACACCTGAGGAAAGGGTACT	0.393													5	4					0	0	0.014758	0	0
KIAA1529	57653	broad.mit.edu	37	9	100071748	100071749	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:100071748_100071749CT>TA	uc011lut.1	+	15	1444_1445	c.671_672CT>TA	c.(670-672)TCT>TTA	p.S224L	KIAA1529_uc004axe.1_Missense_Mutation_p.S224L|KIAA1529_uc004axg.1_Missense_Mutation_p.S85L|KIAA1529_uc011lus.1_Missense_Mutation_p.S85L|KIAA1529_uc010msm.1_RNA|KIAA1529_uc004axf.2_Missense_Mutation_p.S85L|KIAA1529_uc011luv.1_Missense_Mutation_p.S85L	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				GCAGAGCGTTCTGTGACCCTGA	0.609													22	30					0	0	0.115264	0	0
ALG2	85365	broad.mit.edu	37	9	101980728	101980729	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:101980728_101980729GG>AA	uc004azf.2	-	2	808_809	c.738_739CC>TT	c.(736-741)GCCCTA>GCTTTA	p.246_247AL>AL	ALG2_uc004azg.2_Silent_p.153_154AL>AL	NM_033087	NP_149078	Q9H553	ALG2_HUMAN	alpha-1,3-mannosyltransferase ALG2	246_247					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in endoplasmic reticulum|protein N-linked glycosylation via asparagine|response to calcium ion	endoplasmic reticulum membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	alpha-1,3-mannosyltransferase activity|calcium-dependent protein binding|glycolipid 3-alpha-mannosyltransferase activity|protein anchor|protein heterodimerization activity|protein N-terminus binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.0559)				AGCTGTACTAGGGCTTCCAGTG	0.485													53	97					0	0	0.115264	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432921	104432921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:104432921C>T	uc004bbp.1	-	3	2374	c.1773G>A	c.(1771-1773)ATG>ATA	p.M591I	GRIN3A_uc004bbq.1_Missense_Mutation_p.M591I	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	591	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	AGTCAAAGTTCATGTCTTCTG	0.448													21	22					0	0	0.049695	0	0
GRIN3A	116443	broad.mit.edu	37	9	104499750	104499750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:104499750G>A	uc004bbp.1	-	1	1113	c.512C>T	c.(511-513)TCG>TTG	p.S171L	GRIN3A_uc004bbq.1_Missense_Mutation_p.S171L	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	171	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GCTCCATGGCGAACTAGGGGA	0.607													13	22					0	0	0.093190	0	0
OR13C8	138802	broad.mit.edu	37	9	107331717	107331717	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:107331717A>T	uc011lvo.1	+	1	269	c.269A>T	c.(268-270)AAA>ATA	p.K90I		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GCAGTAAAGAAAAAGGTTTCC	0.468													61	87					0	0	0.139131	0	0
OR13C9	286362	broad.mit.edu	37	9	107380359	107380360	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:107380359_107380360CA>AT	uc011lvr.1	-	1	126_127	c.126_127TG>AT	c.(124-129)AATGGT>AAATGT	p.42_43NG>KC		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	42_43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGAGAGTACCATTCCCCAGAA	0.441													24	52					0	0	0.115264	0	0
PTPN3	5774	broad.mit.edu	37	9	112166832	112166832	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:112166832C>A	uc004bed.2	-	19	1961	c.1849G>T	c.(1849-1851)GAA>TAA	p.E617*	PTPN3_uc004beb.2_Nonsense_Mutation_p.E486*|PTPN3_uc004bec.2_Nonsense_Mutation_p.E441*|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Nonsense_Mutation_p.E572*|PTPN3_uc011lwh.1_Nonsense_Mutation_p.E463*|PTPN3_uc011lwd.1_Nonsense_Mutation_p.E85*|PTPN3_uc011lwe.1_Nonsense_Mutation_p.E330*|PTPN3_uc011lwf.1_Nonsense_Mutation_p.E285*	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	617					negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						Aaaatggcttcggggaaaagc	0.398													42	44					4.01765e-15	4.25418e-15	0.111260	1	0
HDHD3	81932	broad.mit.edu	37	9	116136008	116136008	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:116136008G>C	uc004bhi.1	-	2	1411	c.627C>G	c.(625-627)TTC>TTG	p.F209L	HDHD3_uc004bhj.2_Missense_Mutation_p.F209L|HDHD3_uc004bhk.2_Missense_Mutation_p.F209L	NM_031219	NP_112496	Q9BSH5	HDHD3_HUMAN	haloacid dehalogenase-like hydrolase domain	209							phosphoglycolate phosphatase activity|protein binding				0						CAACCACCAGGAAGCTGTGCA	0.587													28	41					0	0	0.125774	0	0
ZNF618	114991	broad.mit.edu	37	9	116769719	116769719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:116769719G>A	uc004bid.2	+	7	739	c.640G>A	c.(640-642)GTG>ATG	p.V214M	ZNF618_uc004bib.1_Missense_Mutation_p.V182M|ZNF618_uc004bic.2_Missense_Mutation_p.V182M|ZNF618_uc011lxi.1_Missense_Mutation_p.V182M|ZNF618_uc011lxj.1_Missense_Mutation_p.V182M	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	214					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGCAGTGGATGGTGAGTCAGG	0.572													11	15					0	0	0.119110	0	0
KIF12	113220	broad.mit.edu	37	9	116857352	116857352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:116857352C>T	uc004bif.2	-	8	894	c.656G>A	c.(655-657)CGA>CAA	p.R219Q	KIF12_uc004big.2_RNA	NM_138424	NP_612433	Q96FN5	KIF12_HUMAN	kinesin family member 12	352					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						GCTTGCATATCGCAGGGTGCT	0.657													13	23					0	0	0.105934	0	0
COL27A1	85301	broad.mit.edu	37	9	117027228	117027228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:117027228C>T	uc011lxl.1	+	30	3274	c.3274C>T	c.(3274-3276)CCG>TCG	p.P1092S	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1092	Pro-rich.|Collagen-like 8.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CCAGGGCAGACCGGGCCGGCC	0.647													30	42					0	0	0.059317	0	0
PAPPA	5069	broad.mit.edu	37	9	118969759	118969759	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:118969759G>A	uc004bjn.2	+	3	1884	c.1503G>A	c.(1501-1503)CTG>CTA	p.L501L	PAPPA_uc011lxp.1_Silent_p.L294L|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	501	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TTAATGAGCTGAAGAACATTC	0.398													25	30					0	0	0.108266	0	0
PAPPA	5069	broad.mit.edu	37	9	118997703	118997703	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:118997703C>G	uc004bjn.2	+	7	2900	c.2519C>G	c.(2518-2520)ACC>AGC	p.T840S	PAPPA_uc011lxp.1_Missense_Mutation_p.T535S|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	840					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GTCCCACTGACCATCAGACTC	0.532													8	14					0	0	0.047766	0	0
PAPPA	5069	broad.mit.edu	37	9	118997908	118997908	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:118997908C>T	uc004bjn.2	+	7	3105	c.2724C>T	c.(2722-2724)TTC>TTT	p.F908F	PAPPA_uc011lxp.1_Silent_p.F603F|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	908					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ATAGGAAATTCGTAGACATGT	0.517													47	56					0	0	0.139131	0	0
ASTN2	23245	broad.mit.edu	37	9	119903640	119903640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:119903640G>A	uc004bjs.1	-	4	1234	c.1133C>T	c.(1132-1134)TCG>TTG	p.S378L	ASTN2_uc004bjr.1_Missense_Mutation_p.S378L|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	378	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CTTCCCTGCCGATGTGCTGCG	0.577													16	32					0	0	0.146539	0	0
TLR4	7099	broad.mit.edu	37	9	120475197	120475197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:120475197G>A	uc004bjz.2	+	3	1082	c.791G>A	c.(790-792)AGA>AAA	p.R264K	TLR4_uc004bka.2_Missense_Mutation_p.R224K|TLR4_uc004bkb.2_Missense_Mutation_p.R64K	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	264	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GGAGAATTTAGAAATGAAGGA	0.358													46	43					0	0	0.139131	0	0
DBC1	1620	broad.mit.edu	37	9	121929509	121929509	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:121929509C>T	uc004bkc.2	-	8	2595	c.2139G>A	c.(2137-2139)GGG>GGA	p.G713G		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	713					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCTGGGGTTTCCCCGGGGCCA	0.552													79	13					0	0	0.139131	0	0
DBC1	1620	broad.mit.edu	37	9	121930329	121930329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:121930329C>T	uc004bkc.2	-	8	1775	c.1319G>A	c.(1318-1320)AGC>AAC	p.S440N		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	440					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GTTGGCCAGGCTGCACATGGC	0.652													4	11					0	0	0.009096	0	0
PTGS1	5742	broad.mit.edu	37	9	125152476	125152476	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:125152476G>A	uc004bmg.1	+	10	1432	c.1297_splice	c.e10-1	p.I433_splice	PTGS1_uc011lys.1_Splice_Site_p.I371_splice|PTGS1_uc010mwb.1_Splice_Site_p.I287_splice|PTGS1_uc004bmf.1_Splice_Site_p.I396_splice|PTGS1_uc004bmh.1_Splice_Site_p.I324_splice|PTGS1_uc011lyt.1_Splice_Site_p.I324_splice	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1						cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	TCTCTCGGCAGATCGGTGGGG	0.602													19	22					0	0	0.038395	0	0
OR1B1	347169	broad.mit.edu	37	9	125391365	125391365	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:125391365G>A	uc011lyz.1	-	1	450	c.450C>T	c.(448-450)AGC>AGT	p.S150S		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACACCACCCAGCTCAAGGCTA	0.547													8	22					0	0	0.047766	0	0
NR6A1	2649	broad.mit.edu	37	9	127298359	127298359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:127298359C>T	uc004bor.1	-	7	1055	c.877G>A	c.(877-879)GAG>AAG	p.E293K	NR6A1_uc004boq.1_Missense_Mutation_p.E288K|NR6A1_uc010mwq.1_Missense_Mutation_p.E289K	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	293					cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						AAGAGCAGCTCGTCGGCCAGG	0.542													49	51					0	0	0.139131	0	0
WDR34	89891	broad.mit.edu	37	9	131397188	131397188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:131397188C>T	uc004bvq.1	-	7	1118	c.994G>A	c.(994-996)GAG>AAG	p.E332K	WDR34_uc004bvs.1_Missense_Mutation_p.E323K|WDR34_uc004bvr.1_Missense_Mutation_p.E304K	NM_052844	NP_443076	Q96EX3	WDR34_HUMAN	WD repeat domain 34	332						cytoplasm				central_nervous_system(2)|skin(1)	3						ACCTCGGTCTCCCCGCGGGGA	0.627											OREG0019522	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	15					0	0	0.021553	0	0
FNBP1	23048	broad.mit.edu	37	9	132662284	132662284	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:132662284G>A	uc004byw.1	-	15	1866	c.1647C>T	c.(1645-1647)CTC>CTT	p.L549L	FNBP1_uc011mbv.1_Silent_p.L539L|FNBP1_uc011mbw.1_Silent_p.L544L|FNBP1_uc004bza.2_Silent_p.L483L|FNBP1_uc004byz.1_Silent_p.L520L|FNBP1_uc011mbu.1_Silent_p.L177L|FNBP1_uc004byx.1_Silent_p.L465L|FNBP1_uc004byy.1_Silent_p.L455L	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	549	Required for self-association and induction of membrane tubulation.|Interaction with PDE6G (By similarity).|Interaction with RND2 (By similarity).|Required for interaction with TNKS.|Interaction with DNM1 and DNM3.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		CTATGGCAGGGAGGGGCTCCT	0.493			T	MLL	AML								46	65					0	0	0.139131	0	0
BAT2L1	84726	broad.mit.edu	37	9	134350076	134350076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:134350076C>T	uc004can.3	+	15	2615	c.2560C>T	c.(2560-2562)CCA>TCA	p.P854S	BAT2L1_uc010mzj.1_Missense_Mutation_p.P437S|BAT2L1_uc004cao.3_Missense_Mutation_p.P212S	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	854							protein binding				0						CAGGTGTTCCCCATTGGAGCC	0.527													12	8					0	0	0.105934	0	0
TTF1	7270	broad.mit.edu	37	9	135275598	135275598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:135275598G>A	uc004cbl.2	-	3	1467	c.1415C>T	c.(1414-1416)TCC>TTC	p.S472F	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_5'UTR	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	472					negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		TCTTATTTCGGAATCTTCAGC	0.413													30	47					0	0	0.134883	0	0
TSC1	7248	broad.mit.edu	37	9	135802642	135802642	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:135802642G>A	uc004cca.2	-	4	390	c.156C>T	c.(154-156)ACC>ACT	p.T52T	TSC1_uc004ccb.3_Silent_p.T52T|TSC1_uc011mcq.1_Silent_p.T52T|TSC1_uc011mcr.1_Intron|TSC1_uc011mcs.1_Intron|TSC1_uc004ccc.1_Silent_p.T52T|TSC1_uc004ccd.2_Silent_p.T52T|TSC1_uc004cce.1_Silent_p.T52T	NM_000368	NP_000359	Q92574	TSC1_HUMAN	tuberous sclerosis 1 protein isoform 1	52					activation of Rho GTPase activity|cell cycle arrest|cell-matrix adhesion|insulin receptor signaling pathway|negative regulation of cell proliferation|negative regulation of protein ubiquitination|negative regulation of TOR signaling cascade|negative regulation of translation|positive regulation of focal adhesion assembly|regulation of phosphoprotein phosphatase activity|regulation of stress fiber assembly|rRNA export from nucleus	cell cortex|lamellipodium|membrane|TSC1-TSC2 complex	chaperone binding|protein N-terminus binding			lung(4)|central_nervous_system(3)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|urinary_tract(1)|skin(1)|ovary(1)|bone(1)	14				OV - Ovarian serous cystadenocarcinoma(145;4.32e-08)|Epithelial(140;2.72e-06)		GCTGAGAGCTGGTTTCCAGGT	0.433			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				23	20					0	0	0.125774	0	0
FCN1	2219	broad.mit.edu	37	9	137808221	137808221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:137808221C>T	uc004cfi.2	-	2	282	c.190G>A	c.(190-192)GGA>AGA	p.G64R		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	64	Collagen-like.				opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		CCTGCCTCTCCCTTTGGCCCT	0.642													122	110					0	0	0.139131	0	0
LCN9	392399	broad.mit.edu	37	9	138557560	138557560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:138557560G>A	uc004cgk.1	+	5	437	c.437G>A	c.(436-438)GGA>GAA	p.G146E		NM_001001676	NP_001001676	Q8WX39	LCN9_HUMAN	lipocalin 9	146						extracellular region	pheromone binding|transporter activity			large_intestine(2)	2		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;3.43e-07)|Epithelial(140;1.97e-06)|all cancers(34;6.1e-05)		GAAAAGTACGGACTTGGCTCA	0.567													13	16					0	0	0.132662	0	0
SEC16A	9919	broad.mit.edu	37	9	139371911	139371911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:139371911C>T	uc004chx.2	-	3	466	c.157G>A	c.(157-159)GAT>AAT	p.D53N	SEC16A_uc004chv.3_5'Flank|SEC16A_uc004chw.2_Missense_Mutation_p.D53N|SEC16A_uc010nbn.2_Missense_Mutation_p.D53N|SEC16A_uc010nbo.1_Missense_Mutation_p.D53N	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GCAAATGGATCCGTGACCGGC	0.567													16	33					0	0	0.146539	0	0
FAM69B	138311	broad.mit.edu	37	9	139616459	139616459	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr9:139616459C>T	uc004cik.2	+	3	379	c.285C>T	c.(283-285)CTC>CTT	p.L95L	FAM69B_uc004cil.2_Silent_p.L8L|SNHG7_uc004cim.2_RNA	NM_152421	NP_689634	Q5VUD6	FA69B_HUMAN	hypothetical protein LOC138311	95	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;1.03e-05)|Epithelial(140;0.00013)		GGACCTGCCTCTCGGTGGCCC	0.657													17	26					0	0	0.146539	0	0
MXRA5	25878	broad.mit.edu	37	X	3239399	3239399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:3239399G>A	uc004crg.3	-	5	4484	c.4327C>T	c.(4327-4329)CTC>TTC	p.L1443F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1443						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ATGCTTGAGAGAGTTGTGGAA	0.448													20	5					0	0	0.049695	0	0
SHROOM2	357	broad.mit.edu	37	X	9912692	9912692	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:9912692C>T	uc004csu.1	+	9	4413	c.4323C>T	c.(4321-4323)ATC>ATT	p.I1441I	SHROOM2_uc004csv.2_Silent_p.I275I|SHROOM2_uc011mic.1_Silent_p.I276I|SHROOM2_uc004csw.1_Silent_p.I276I	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1441	ASD2.				apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				AGGAGCTCATCGAGAGCATCA	0.687													10	1					0	0	0.093190	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736281	12736281	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:12736281G>A	uc004cuz.1	+	16	3842	c.3336G>A	c.(3334-3336)GGG>GGA	p.G1112G	FRMPD4_uc011mij.1_Silent_p.G1104G	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1112					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						CAGCAACAGGGAAAACCTTTC	0.507													71	11					0	0	0.139131	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29959832	29959832	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:29959832G>A	uc004dby.2	+	9	1630	c.1122G>A	c.(1120-1122)TTG>TTA	p.L374L		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	374	Helical; (Potential).				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						TTGTATGTTTGGTGACCATCT	0.408													54	11					0	0	0.139131	0	0
GK	2710	broad.mit.edu	37	X	30736685	30736685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:30736685C>T	uc004dch.3	+	14	1185	c.1006C>T	c.(1006-1008)CGC>TGC	p.R336C	GK_uc010ngj.2_Missense_Mutation_p.R330C|GK_uc004dci.3_Missense_Mutation_p.R330C|GK_uc011mjz.1_Missense_Mutation_p.R131C|GK_uc011mka.1_Missense_Mutation_p.R173C|GK_uc010ngk.2_Missense_Mutation_p.R125C	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	336					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						TGCTGTTATTCGCTGGCTAAG	0.333													14	2					0	0	0.146539	0	0
FAM47A	158724	broad.mit.edu	37	X	34149531	34149531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:34149531C>T	uc004ddg.2	-	1	898	c.865G>A	c.(865-867)GAA>AAA	p.E289K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	289										ovary(4)|central_nervous_system(1)	5						TCTGTGGGTTCGTCAGTTGTC	0.572													15	3					0	0	0.119110	0	0
CXorf36	79742	broad.mit.edu	37	X	45059862	45059862	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:45059862C>T	uc004dgg.2	-	1	285	c.210G>A	c.(208-210)AAG>AAA	p.K70K	CXorf36_uc004dgi.3_Silent_p.K70K	NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	70						extracellular region				lung(1)	1						TAAAGAACTTCTTGCAAATAG	0.383													20	4					0	0	0.069288	0	0
Unknown	0	broad.mit.edu	37	X	48159160	48159161	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:48159160_48159161CC>TT	uc010nib.1	-	6	459_460	c.372_373GG>AA	c.(370-375)AAGGAA>AAAAAA	p.E125K		NM_174962	NP_777622			synovial sarcoma, X breakpoint 9																		TCTGGCACTTCCTTCGAATCAT	0.426													163	31					0	0	0.115264	0	0
PIM2	11040	broad.mit.edu	37	X	48771762	48771762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:48771762G>A	uc004dls.2	-	5	984	c.682C>T	c.(682-684)CTC>TTC	p.L228F	SLC35A2_uc004dlo.1_5'Flank|SLC35A2_uc011mml.1_5'Flank|SLC35A2_uc004dlp.1_5'Flank|SLC35A2_uc011mmm.1_5'Flank|SLC35A2_uc011mmn.1_5'Flank|SLC35A2_uc004dlq.2_5'Flank|SLC35A2_uc011mmo.1_5'Flank	NM_006875	NP_006866	Q9P1W9	PIM2_HUMAN	serine/threonine protein kinase pim-2	228	Protein kinase.				anti-apoptosis|cell proliferation|male meiosis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|response to virus		ATP binding|protein serine/threonine kinase activity			lung(3)|stomach(1)	4						ATGTCATAGAGGAGGATGCCC	0.592													30	3					0	0	0.050027	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433254	72433255	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:72433254_72433255GG>AA	uc004ebi.2	-	1	1430_1431	c.1074_1075CC>TT	c.(1072-1077)ATCCGA>ATTTGA	p.R359*	NAP1L2_uc011mqj.1_Nonsense_Mutation_p.R217*	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	359					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					GTTACAGTTCGGATTGTTCCCC	0.371													27	7					0	0	0.115264	0	0
MAGEE1	57692	broad.mit.edu	37	X	75649459	75649459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:75649459C>T	uc004ecm.1	+	1	1343	c.1136C>T	c.(1135-1137)TCC>TTC	p.S379F		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	379	Pro-rich.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						TCGGACACCTCCGTGCCGCCC	0.682													11	2					0	0	0.069234	0	0
CYLC1	1538	broad.mit.edu	37	X	83129179	83129179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:83129179C>T	uc004eei.1	+	4	1484	c.1463C>T	c.(1462-1464)TCT>TTT	p.S488F	CYLC1_uc004eeh.1_Missense_Mutation_p.S487F	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	488	6.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						GAAATGGAATCTGATTTGGAG	0.343													8	1					0	0	0.038147	0	0
SRPX2	27286	broad.mit.edu	37	X	99920558	99920558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:99920558G>A	uc004egb.2	+	7	1165	c.685G>A	c.(685-687)GGC>AGC	p.G229S		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	229	HYR.				angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						CCCTGAGCCTGGCTCTCACTT	0.522													42	7					0	0	0.104719	0	0
MST4	51765	broad.mit.edu	37	X	131197486	131197486	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:131197486A>G	uc004ewk.1	+	4	600	c.299A>G	c.(298-300)GAA>GGA	p.E100G	MST4_uc004ewl.1_Missense_Mutation_p.E23G|MST4_uc011mux.1_Missense_Mutation_p.E122G|MST4_uc010nrj.1_Missense_Mutation_p.E100G|MST4_uc004ewm.1_Missense_Mutation_p.E100G	NM_016542	NP_057626	Q9P289	MST4_HUMAN	serine/threonine protein kinase MST4 isoform 1	100	Protein kinase.				cellular component disassembly involved in apoptosis|regulation of apoptosis	cytosol|Golgi membrane	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(3)|stomach(2)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(192;0.000127)					ATAATAATGGAATACCTGGGC	0.318													32	5					0	0	0.080422	0	0
GPC4	2239	broad.mit.edu	37	X	132445398	132445398	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:132445398G>A	uc004exc.1	-	4	977	c.765C>T	c.(763-765)TCC>TCT	p.S255S	GPC4_uc011mvg.1_Silent_p.S185S	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	255					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					CCCGGCAGTGGGAGCAGTAGA	0.483													48	12					0	0	0.139131	0	0
DDX26B	203522	broad.mit.edu	37	X	134706944	134706945	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:134706944_134706945GG>AA	uc004eyw.3	+	11	1855_1856	c.1492_1493GG>AA	c.(1492-1494)GGG>AAG	p.G498K	DDX26B_uc004eyx.3_Missense_Mutation_p.G99K	NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	498											0	Acute lymphoblastic leukemia(192;6.56e-05)					CTTCCAAATTGGGCTCTTAAAC	0.307													13	4					0	0	0.115264	0	0
SLC9A6	10479	broad.mit.edu	37	X	135084286	135084286	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:135084286C>T	uc004ezj.2	+	6	793	c.717C>T	c.(715-717)TTC>TTT	p.F239F	SLC9A6_uc004ezk.2_Silent_p.F271F|SLC9A6_uc011mvx.1_Silent_p.F219F	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	239	Helical; (Potential).				regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TTGCTATATTCCACGAGCTTC	0.373													51	12					0	0	0.139131	0	0
GPR101	83550	broad.mit.edu	37	X	136113015	136113015	+	Silent	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:136113015C>T	uc011mwh.1	-	1	819	c.819G>A	c.(817-819)AAG>AAA	p.K273K		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	273	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					TTCTGCCCTCCTTGGCCTTGA	0.577													74	15					0	0	0.139131	0	0
MAGEA8	4107	broad.mit.edu	37	X	149013371	149013371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:149013371C>T	uc004fdw.1	+	3	540	c.325C>T	c.(325-327)CGG>TGG	p.R109W		NM_005364	NP_005355	P43361	MAGA8_HUMAN	melanoma antigen family A, 8	109											0	Acute lymphoblastic leukemia(192;6.56e-05)					GTCCCTGTTCCGGGAAGCACT	0.542													57	12					0	0	0.139131	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303953	151303953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:151303953G>A	uc004ffk.2	-	5	548	c.140C>T	c.(139-141)TCT>TTT	p.S47F	MAGEA10_uc004ffl.2_Missense_Mutation_p.S47F	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	47											0	Acute lymphoblastic leukemia(192;6.56e-05)					ggatggaaaagaggagCTGGT	0.398													26	3					0	0	0.091800	0	0
GABRQ	55879	broad.mit.edu	37	X	151818907	151818907	+	Silent	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:151818907G>A	uc004ffp.1	+	7	785	c.765G>A	c.(763-765)CTG>CTA	p.L255L		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	255	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ACATACGCCTGATACTGAAGT	0.517													160	22					0	0	0.139131	0	0
FAM58A	92002	broad.mit.edu	37	X	152860031	152860031	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:152860031G>A	uc010nug.2	-	2	320	c.217C>T	c.(217-219)CAG>TAG	p.Q73*				Q8N1B3	FA58A_HUMAN	RecName: Full=Cyclin-related protein FAM58B;	135					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AAGGAGACCTGGAAGCGCAGA	0.542													40	5					0	0	0.080422	0	0
SLC10A3	8273	broad.mit.edu	37	X	153717110	153717110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chrX:153717110G>A	uc004flq.2	-	3	434	c.170C>T	c.(169-171)ACC>ATC	p.T57I	UBL4A_uc004flo.2_5'Flank|SLC10A3_uc004flr.2_Missense_Mutation_p.T57I|SLC10A3_uc004flp.2_Missense_Mutation_p.T57I	NM_001142392	NP_001135864	P09131	P3_HUMAN	solute carrier family 10, member 3 isoform 1	57					organic anion transport	integral to membrane	bile acid:sodium symporter activity			ovary(1)|skin(1)	2	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CGGTGGCACGGTGTGACCCCC	0.612													38	8					0	0	0.098360	0	0
HIPK1	204851	broad.mit.edu	37	1	114495410	114495410	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:114495410delT	uc001eem.2	+	3	1260	c.1099delT	c.(1099-1101)TTAfs	p.L367fs	HIPK1_uc001eel.2_Frame_Shift_Del_p.L367fs|HIPK1_uc001een.2_Frame_Shift_Del_p.L367fs|HIPK1_uc001eeo.2_5'UTR|HIPK1_uc001eep.2_5'Flank	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	367	Protein kinase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TATTCTTGGGTTACCATTTTG	0.358													24	47	---	---	---	---					
CSDE1	7812	broad.mit.edu	37	1	115276684	115276687	+	Frame_Shift_Del	DEL	AGTG	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:115276684_115276687delAGTG	uc001efk.2	-	8	1100_1103	c.634_637delCACT	c.(634-639)CACTATfs	p.H212fs	CSDE1_uc001efi.2_Frame_Shift_Del_p.H258fs|CSDE1_uc001efj.2_RNA|CSDE1_uc001efl.2_Frame_Shift_Del_p.H181fs|CSDE1_uc001efm.2_Frame_Shift_Del_p.H227fs|CSDE1_uc009wgv.2_Frame_Shift_Del_p.H212fs|CSDE1_uc001efn.2_Frame_Shift_Del_p.H181fs	NM_001007553	NP_001007554	O75534	CSDE1_HUMAN	upstream of NRAS isoform 1	212_213	CSD 3.				male gonad development|regulation of transcription, DNA-dependent	cytoplasm	DNA binding|protein binding|RNA binding			ovary(1)	1	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;2.21e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AATTCACTATAGTGAAAGAATATC	0.348													13	32	---	---	---	---					
NR1I3	9970	broad.mit.edu	37	1	161203046	161203058	+	Frame_Shift_Del	DEL	ACTCAGTTGCACA	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:161203046_161203058delACTCAGTTGCACA	uc001fzx.2	-	4	512_524	c.309_321delTGTGCAACTGAGT	c.(307-321)CCTGTGCAACTGAGTfs	p.P103fs	TOMM40L_uc009wuf.1_Intron|NR1I3_uc001fzf.2_Frame_Shift_Del_p.P103fs|NR1I3_uc001fzg.2_Frame_Shift_Del_p.P74fs|NR1I3_uc001fzh.2_Frame_Shift_Del_p.P74fs|NR1I3_uc001fzi.2_Frame_Shift_Del_p.P74fs|NR1I3_uc001fzj.2_Frame_Shift_Del_p.P74fs|NR1I3_uc001fzk.2_Frame_Shift_Del_p.P74fs|NR1I3_uc001fzl.2_Frame_Shift_Del_p.P74fs|NR1I3_uc001fzm.2_Frame_Shift_Del_p.P28fs|NR1I3_uc001fzn.2_Intron|NR1I3_uc009wug.2_Splice_Site|NR1I3_uc001fzp.2_Frame_Shift_Del_p.P103fs|NR1I3_uc001fzo.2_Intron|NR1I3_uc001fzq.2_Intron|NR1I3_uc001fzr.2_Intron|NR1I3_uc001fzs.2_Intron|NR1I3_uc001fzt.2_Intron|NR1I3_uc001fzu.2_Intron|NR1I3_uc001fzv.2_Intron|NR1I3_uc001fzw.2_Frame_Shift_Del_p.P103fs|NR1I3_uc001fzy.2_Frame_Shift_Del_p.P103fs|NR1I3_uc001fzz.2_Frame_Shift_Del_p.P103fs|NR1I3_uc001gaa.2_Frame_Shift_Del_p.P103fs|NR1I3_uc001gab.2_Frame_Shift_Del_p.P103fs|NR1I3_uc001gac.2_Frame_Shift_Del_p.P74fs|NR1I3_uc010pkm.1_Frame_Shift_Del_p.P74fs|NR1I3_uc010pkn.1_Frame_Shift_Del_p.P103fs	NM_001077480	NP_001070948	Q14994	NR1I3_HUMAN	constitutive androstane receptor isoform 2	103_107					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	androgen receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(1)|skin(1)	2	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CTTGCTCCTTACTCAGTTGCACAGGTGTTTGCT	0.577													41	110	---	---	---	---					
MPZL1	9019	broad.mit.edu	37	1	167741625	167741625	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:167741625delT	uc001geo.2	+	3	574	c.372delT	c.(370-372)AATfs	p.N124fs	MPZL1_uc001gen.3_Frame_Shift_Del_p.N124fs|MPZL1_uc001gep.2_Frame_Shift_Del_p.N124fs|MPZL1_uc001geq.2_Intron|MPZL1_uc009wvh.2_Intron	NM_003953	NP_003944	O95297	MPZL1_HUMAN	myelin protein zero-like 1 isoform a	124	Extracellular (Potential).|Ig-like V-type.				cell-cell signaling|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	protein binding|structural molecule activity			ovary(2)	2	all_hematologic(923;0.215)					ACATAGAAAATATGCAGTTTA	0.428													15	78	---	---	---	---					
TMEM63A	9725	broad.mit.edu	37	1	226034840	226034842	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr1:226034840_226034842delCTG	uc001hpm.1	-	24	2573_2575	c.2323_2325delCAG	c.(2323-2325)CAGdel	p.Q775del		NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	775						integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					CACCATAGGTCTGCTGCTGCTGC	0.626													8	257	---	---	---	---					
KIF20B	9585	broad.mit.edu	37	10	91497608	91497609	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr10:91497608_91497609delAT	uc001kgs.1	+	20	3082_3083	c.3010_3011delAT	c.(3010-3012)ATAfs	p.I1004fs	KIF20B_uc001kgr.1_Frame_Shift_Del_p.I964fs|KIF20B_uc001kgt.1_Frame_Shift_Del_p.I215fs|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1004					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						GATTTCAAACATAGATTTGCTC	0.332													23	30	---	---	---	---					
SSH1	54434	broad.mit.edu	37	12	109210894	109210894	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:109210894delG	uc001tnm.2	-	5	408	c.321delC	c.(319-321)TACfs	p.Y107fs	SSH1_uc010sxg.1_Frame_Shift_Del_p.Y118fs|SSH1_uc001tnn.3_Frame_Shift_Del_p.Y107fs|SSH1_uc001tno.1_Frame_Shift_Del_p.Y34fs	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	107					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						CCACCACCATGTACCGGACCC	0.607													29	71	---	---	---	---					
TPCN1	53373	broad.mit.edu	37	12	113704096	113704098	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:113704096_113704098delCTG	uc001tuw.2	+	4	646_648	c.349_351delCTG	c.(349-351)CTGdel	p.L122del	TPCN1_uc001tux.2_In_Frame_Del_p.L194del|TPCN1_uc010syt.1_In_Frame_Del_p.L54del	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	122	Helical; Name=S1 of repeat I; (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						GGCCACGGCCCTGCTGCTGCTGC	0.640													7	428	---	---	---	---					
CIT	11113	broad.mit.edu	37	12	120156088	120156088	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr12:120156088delG	uc001txi.1	-	31	4057	c.4004delC	c.(4003-4005)CCGfs	p.P1335fs	CIT_uc001txh.1_Frame_Shift_Del_p.P854fs|CIT_uc001txj.1_Frame_Shift_Del_p.P1377fs	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1335					intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GCTGGATGGCGGGGCCAGCAG	0.577													14	24	---	---	---	---					
GPR132	29933	broad.mit.edu	37	14	105518091	105518094	+	Frame_Shift_Del	DEL	ACGT	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr14:105518091_105518094delACGT	uc001yqd.2	-	4	1279_1282	c.380_383delACGT	c.(379-384)TACGTCfs	p.Y127fs	GPR132_uc001yqc.2_5'UTR|GPR132_uc001yqe.2_Frame_Shift_Del_p.Y118fs	NM_013345	NP_037477	Q9UNW8	GP132_HUMAN	G protein-coupled receptor 132	127_128	Helical; Name=3; (Potential).				response to stress	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.0953)|Melanoma(154;0.155)|all_epithelial(191;0.219)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.02)|all cancers(159;0.0419)|OV - Ovarian serous cystadenocarcinoma(161;0.0521)		GAGGATGCTGACGTAGATGTTGCA	0.637													63	102	---	---	---	---					
HERC2	8924	broad.mit.edu	37	15	28518115	28518115	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr15:28518115delC	uc001zbj.2	-	8	942	c.836delG	c.(835-837)GGAfs	p.G279fs	HERC2_uc001zbl.1_5'UTR	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	279					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GGGGATGCTTCCTGGCCCTTT	0.592													8	59	---	---	---	---					
ZZEF1	23140	broad.mit.edu	37	17	3979949	3979949	+	Frame_Shift_Del	DEL	G	-	-	rs7207986	byFrequency	TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:3979949delG	uc002fxe.2	-	21	3280	c.3216delC	c.(3214-3216)CCCfs	p.P1072fs	ZZEF1_uc002fxk.1_Frame_Shift_Del_p.P1073fs	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1072							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GTCCTCCTTCGGGGCCACTAC	0.547													5	9	---	---	---	---					
EFTUD2	9343	broad.mit.edu	37	17	42929896	42929896	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr17:42929896delA	uc002ihn.2	-	26	2857	c.2596delT	c.(2596-2598)TCCfs	p.S866fs	EFTUD2_uc010wje.1_Frame_Shift_Del_p.S831fs|EFTUD2_uc010wjf.1_Frame_Shift_Del_p.S856fs	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	866						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				TACAGAGGGGAGCCTGGGATG	0.522													26	44	---	---	---	---					
C19orf29	58509	broad.mit.edu	37	19	3624103	3624104	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr19:3624103_3624104insG	uc002lyh.2	-	2	277_278	c.224_225insC	c.(223-225)CCGfs	p.P75fs	C19orf29_uc002lyi.3_Frame_Shift_Ins_p.P75fs|C19orf29_uc010dto.2_RNA	NM_001080543	NP_001074012	Q8WUQ7	CS029_HUMAN	chromosome 19 open reading frame 29	75						catalytic step 2 spliceosome	protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTTGGGCCGCGGGGGGCTCCG	0.668													58	113	---	---	---	---					
ETAA1	54465	broad.mit.edu	37	2	67631180	67631180	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr2:67631180delT	uc002sdz.1	+	5	1505	c.1366delT	c.(1366-1368)TTAfs	p.L456fs		NM_019002	NP_061875	Q9NY74	ETAA1_HUMAN	ETAA16 protein	456						cytoplasm|nucleus				ovary(3)|large_intestine(1)	4						TGACAGAGAATTAATAGATGC	0.289													11	20	---	---	---	---					
TCP10L	140290	broad.mit.edu	37	21	33949090	33949091	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr21:33949090_33949091insC	uc002ypw.3	-	5	757_758	c.641_642insG	c.(640-642)GGTfs	p.G214fs		NM_144659	NP_653260	Q9NV44	CU077_HUMAN	T-complex 10A-2	Error:Variant_position_missing_in_Q9NV44_after_alignment											0						ATCTTCAGACACCCCCCCGTCT	0.480													44	56	---	---	---	---					
KEL	3792	broad.mit.edu	37	7	142655437	142655438	+	In_Frame_Ins	INS	-	CAAGTGTAT	CAAGTGTAT			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr7:142655437_142655438insCAAGTGTAT	uc003wcb.2	-	5	688_689	c.478_479insATACACTTG	c.(478-480)GCC>GATACACTTGCC	p.159_160insDTL		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	159_160	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					AGCTTCAATGGCAAGTGTATCC	0.475													16	113	---	---	---	---					
TMEM66	51669	broad.mit.edu	37	8	29923641	29923641	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MT-06A-11D-A197-08	TCGA-EE-A2MT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	b25d86f6-cc9e-41c0-90b0-cee878219edb	edf0de46-0804-4c09-b470-64311e405bf6	g.chr8:29923641delA	uc003xhs.2	-	5	1041	c.857delT	c.(856-858)TTCfs	p.F286fs	TMEM66_uc003xht.2_Frame_Shift_Del_p.F286fs|TMEM66_uc003xhu.2_Frame_Shift_Del_p.F250fs|TMEM66_uc003xhv.2_Frame_Shift_Del_p.F114fs	NM_016127	NP_057211	Q96BY9	TMM66_HUMAN	transmembrane protein 66 precursor	286						integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(542;0.0993)|Kidney(114;0.119)		CGAGTCTGAGAAGGGTGTTGC	0.463													28	50	---	---	---	---					
