Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIAA0562	9731	broad.mit.edu	37	1	3755581	3755581	+	Missense_Mutation	SNP	G	A	A	rs139901107		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:3755581G>A	uc001aky.2	-	8	1197	c.838C>T	c.(838-840)CGT>TGT	p.R280C	KIAA0562_uc010nzm.1_RNA|KIAA0562_uc001akz.2_Missense_Mutation_p.R280C	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,	280	Potential.					centriole	binding	p.R280C(1)			0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		ACCTCGGCACGATACTGCTCC	0.587													83	64					0	0	0.000781405	0	0
MASP2	10747	broad.mit.edu	37	1	11102948	11102948	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:11102948G>A	uc001aru.2	-	6	894	c.873C>T	c.(871-873)ATC>ATT	p.I291I		NM_006610	NP_006601	O00187	MASP2_HUMAN	mannan-binding lectin serine protease 2 isoform	291	CUB 2.				complement activation, classical pathway|complement activation, lectin pathway|proteolysis	extracellular region	calcium ion binding|calcium-dependent protein binding|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.071)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)		TCGTGTAGTGGATCTTCCAGC	0.532													61	31					0	0	0.000781405	0	0
ESPNP	284729	broad.mit.edu	37	1	17029238	17029238	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:17029238C>T	uc001azn.1	-	6	1128	c.1014G>A	c.(1012-1014)AAG>AAA	p.K338K		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						GGAGTTTGTTCTTGGTCTGCA	0.498													6	81					0	0	0.000157383	0	0
PADI3	51702	broad.mit.edu	37	1	17603320	17603320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:17603320G>A	uc001bai.2	+	13	1544	c.1504G>A	c.(1504-1506)GAA>AAA	p.E502K		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	502					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GCTCTTCCAGGAAAAGCAGAA	0.637													17	6					0	0	0.00074312	0	0
PLA2G2D	26279	broad.mit.edu	37	1	20442831	20442831	+	Silent	SNP	C	G	G	rs150798636	byFrequency	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:20442831C>G	uc001bcz.2	-	2	197	c.180G>C	c.(178-180)ACG>ACC	p.T60T	PLA2G2D_uc009vpo.2_RNA	NM_012400	NP_036532	Q9UNK4	PA2GD_HUMAN	phospholipase A2, group IID precursor	60					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.000175)|GBM - Glioblastoma multiforme(114;0.000798)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GTTACCAGTCCGTGGCATCTT	0.522										Multiple Myeloma(11;0.12)			23	13					0	0	0.000878237	0	0
ZNF436	80818	broad.mit.edu	37	1	23688771	23688771	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:23688771C>T	uc001bgt.2	-	3	1485	c.1104G>A	c.(1102-1104)GGG>GGA	p.G368G	ZNF436_uc001bgu.2_Silent_p.G368G	NM_030634	NP_085137	Q9C0F3	ZN436_HUMAN	zinc finger protein 436	368	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;5.97e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000977)|KIRC - Kidney renal clear cell carcinoma(1967;0.00336)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		TGAAGCTTTTCCCACAAGCAT	0.463													39	33					0	0	0.000228196	0	0
FCN3	8547	broad.mit.edu	37	1	27700472	27700472	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:27700472G>A	uc001boa.2	-	3	222	c.216C>T	c.(214-216)GGC>GGT	p.G72G	FCN3_uc001bob.2_Silent_p.G72G	NM_003665	NP_003656	O75636	FCN3_HUMAN	ficolin 3 isoform 1 precursor	72	Collagen-like.				complement activation, lectin pathway|signal transduction	collagen|extracellular space	receptor binding|sugar binding				0		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;1.42e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00128)|KIRC - Kidney renal clear cell carcinoma(1967;0.00155)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CACCCTTGGGGCCCATCTTGC	0.547													19	40					0	0	0.000175454	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35915573	35915573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:35915573G>A	uc001byx.2	-	15	2506	c.2248C>T	c.(2248-2250)CTT>TTT	p.L750F	KIAA0319L_uc001byw.2_Missense_Mutation_p.L192F|KIAA0319L_uc010ohv.1_Missense_Mutation_p.L392F	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	750	PKD 5.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GAAAGAAAAAGGATAGGGTGA	0.463													29	20					0	0	0.000409698	0	0
HPCAL4	51440	broad.mit.edu	37	1	40150167	40150167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:40150167C>T	uc001cdr.2	-	2	229	c.109G>A	c.(109-111)GAC>AAC	p.D37N	HPCAL4_uc010oix.1_Missense_Mutation_p.D37N	NM_016257	NP_057341	Q9UM19	HPCL4_HUMAN	hippocalcin-like protein 4	37	EF-hand 1.				central nervous system development	intracellular	calcium ion binding			central_nervous_system(1)	1	all_cancers(7;4.65e-13)|Lung NSC(20;2.88e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CTGGGGCAGTCCTTCAGGAAG	0.612													15	14					0	0	0.000566183	0	0
KDM4A	9682	broad.mit.edu	37	1	44128634	44128634	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:44128634A>G	uc001cjx.2	+	5	665	c.499A>G	c.(499-501)ACC>GCC	p.T167A	KDM4A_uc010oki.1_Missense_Mutation_p.T167A	NM_014663	NP_055478	O75164	KDM4A_HUMAN	jumonji domain containing 2A	167	JmjC.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1						GAGTGGGATCACCATTGAGGG	0.493													47	33					0	0	0.000781405	0	0
FAAH	2166	broad.mit.edu	37	1	46860092	46860092	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:46860092G>A	uc001cpu.2	+	1	154	c.72G>A	c.(70-72)GCG>GCA	p.A24A		NM_001441	NP_001432	O00519	FAAH1_HUMAN	fatty acid amide hydrolase	24	Helical; (Potential).				fatty acid catabolic process	cytoplasm|cytoskeleton|endomembrane system|integral to membrane|organelle membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|fatty acid amide hydrolase activity			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(166;0.155)				Propofol(DB00818)|Thiopental(DB00599)	GCTTCGTGGCGGCGGCCGTGG	0.756													5	1					0	0	0.000602214	0	0
CYP4B1	1580	broad.mit.edu	37	1	47284389	47284389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:47284389C>T	uc001cqm.3	+	12	1523	c.1439C>T	c.(1438-1440)CCC>CTC	p.P480L	CYP4B1_uc001cqn.3_Missense_Mutation_p.P481L|CYP4B1_uc009vym.2_Missense_Mutation_p.P466L|CYP4B1_uc010omk.1_Missense_Mutation_p.P317L	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	480					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					TCTCTGGACCCCTCACGGCTG	0.577													26	49					0	0	0.000227799	0	0
CYP4A11	1579	broad.mit.edu	37	1	47395818	47395818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:47395818G>A	uc001cqp.3	-	12	1580	c.1529C>T	c.(1528-1530)CCT>CTT	p.P510L		NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	510			NGIHLRLRRLPNPCEDKDQL -> MESTCVSGGSLTLVKTR TSFEGLHLPSCLPDPRFCPLPVCPYPVFCLPTFPSSHLPAV PQSACPSLSHLSPGLPTCLSTCLLPTCISCWEKS (in CYP4A11V).		long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	ACAAGGGTTAGGGAGCCTCCT	0.383													7	22					0	0	0.000442599	0	0
C8A	731	broad.mit.edu	37	1	57372379	57372379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:57372379C>T	uc001cyo.2	+	8	1268	c.1136C>T	c.(1135-1137)TCC>TTC	p.S379F		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	379	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						TTTGGAGGCTCCTTGGGCATT	0.393													40	21					0	0	0.000589545	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507471	74507471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:74507471G>A	uc001dfy.3	-	7	1336	c.1144C>T	c.(1144-1146)CCT>TCT	p.P382S	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	382										ovary(2)	2						ATTGGCTGAGGATATGCAGGA	0.348													24	28					0	0	0.000878237	0	0
SLC44A5	204962	broad.mit.edu	37	1	75707705	75707705	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:75707705C>T	uc001dgu.2	-	9	657	c.513G>A	c.(511-513)GCG>GCA	p.A171A	SLC44A5_uc001dgt.2_Silent_p.A171A|SLC44A5_uc001dgs.2_Silent_p.A129A|SLC44A5_uc001dgr.2_Silent_p.A129A|SLC44A5_uc010oqz.1_Silent_p.A210A|SLC44A5_uc010ora.1_Silent_p.A165A|SLC44A5_uc010orb.1_Silent_p.A41A	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	171	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TGGGAAAAATCGCTGTTGGAC	0.313													7	2					0	0	0.000157383	0	0
DPYD	1806	broad.mit.edu	37	1	97700485	97700485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:97700485G>A	uc001drv.2	-	19	2502	c.2365C>T	c.(2365-2367)CCC>TCC	p.P789S		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	789					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GCCAAAATGGGAAATCCAGGC	0.468													11	29					0	0	0.000978159	0	0
S1PR1	1901	broad.mit.edu	37	1	101705604	101705604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:101705604C>T	uc001dud.2	+	2	1578	c.1064C>T	c.(1063-1065)TCG>TTG	p.S355L	S1PR1_uc009weg.2_Missense_Mutation_p.S355L	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	355	Cytoplasmic (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						CGCAGCAAATCGGACAATTCC	0.537													42	15					0	0	0.000509022	0	0
CD53	963	broad.mit.edu	37	1	111435097	111435097	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:111435097T>A	uc001dzw.2	+	4	365	c.194T>A	c.(193-195)GTA>GAA	p.V65E	CD53_uc001dzx.2_Missense_Mutation_p.V65E|CD53_uc010owa.1_Missense_Mutation_p.V65E|CD53_uc001dzy.2_Missense_Mutation_p.V65E	NM_001040033	NP_001035122	P19397	CD53_HUMAN	CD53 antigen	65	Helical; (Potential).				signal transduction	integral to membrane|plasma membrane					0		all_cancers(81;1.06e-05)|all_epithelial(167;1.95e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0264)|Colorectal(144;0.0375)|all cancers(265;0.11)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.141)|LUSC - Lung squamous cell carcinoma(189;0.144)		ATTATCATGGTAGTTGCCTTC	0.517													23	67					0	0	0.00106085	0	0
C1orf103	55791	broad.mit.edu	37	1	111493993	111493993	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:111493993G>A	uc001eaa.2	-	2	1769	c.1513C>T	c.(1513-1515)CAG>TAG	p.Q505*	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	505					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		TCTATGCTCTGGAGGACACTT	0.393													35	68					0	0	0.000953801	0	0
REG4	83998	broad.mit.edu	37	1	120342428	120342428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:120342428C>T	uc001eig.2	-	5	663	c.223G>A	c.(223-225)GAA>AAA	p.E75K	REG4_uc001eif.2_Missense_Mutation_p.E75K	NM_001159352	NP_001152824	Q9BYZ8	REG4_HUMAN	regenerating islet-derived family, member 4	75	C-type lectin.					extracellular region	sugar binding			ovary(1)	1	all_cancers(5;4.81e-10)|all_epithelial(5;7.98e-11)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;8.1e-07)|Lung NSC(69;5.89e-06)|all_epithelial(167;0.000959)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0588)		GTGCTGGCTTCCTTTAAACTC	0.498													128	699					0	0	0.000781405	0	0
ADAM30	11085	broad.mit.edu	37	1	120436806	120436807	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:120436806_120436807GG>TT	uc001eij.2	-	1	2307_2308	c.2153_2154CC>AA	c.(2152-2154)CCC>CAA	p.P718Q		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	718	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TTTCCTGTTTGGGTTTTAAGTG	0.351													23	914					0	0	6.4e-05	0	0
NOTCH2	4853	broad.mit.edu	37	1	120465292	120465293	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:120465292_120465293CC>AA	uc001eik.2	-	27	5224_5225	c.4968_4969GG>TT	c.(4966-4971)CAGGGG>CATTGG	p.1656_1657QG>HW		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1656_1657	Negative regulatory region (NRR).|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GACAGGGTCCCCTGTATGGCGT	0.53			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				20	851					0	0	6.4e-05	0	0
NOTCH2	4853	broad.mit.edu	37	1	120484259	120484260	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:120484259_120484260GG>TT	uc001eik.2	-	18	3126_3127	c.2870_2871CC>AA	c.(2869-2871)CCC>CAA	p.P957Q	NOTCH2_uc001eil.2_Missense_Mutation_p.P957Q	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	957	Extracellular (Potential).|EGF-like 25; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CATTCTTACAGGGTTCACTCAG	0.485			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				26	874					0	0	6.4e-05	0	0
NBPF9	400818	broad.mit.edu	37	1	144828688	144828688	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:144828688C>T	uc009wig.1	+	23	2809	c.2733C>T	c.(2731-2733)CAC>CAT	p.H911H	NBPF9_uc010oxn.1_Silent_p.H809H|NBPF9_uc010oxo.1_Silent_p.H836H|NBPF9_uc010oxr.1_Silent_p.H938H|NBPF9_uc010oxt.1_Silent_p.H726H|NBPF9_uc001ekg.1_Silent_p.H238H|NBPF9_uc001ekk.1_Silent_p.H482H|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Silent_p.H238H|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.H571H|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	911	NBPF 7.					cytoplasm					0						AGGAACAGCACATCAGCTTCG	0.433													34	106					0	0	0.000319135	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144921851	144921851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:144921851G>A	uc001elw.3	-	9	1469	c.1178C>T	c.(1177-1179)TCT>TTT	p.S393F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.S459F|PDE4DIP_uc001emc.1_Missense_Mutation_p.S393F|PDE4DIP_uc001emd.1_Missense_Mutation_p.S393F|PDE4DIP_uc001emb.1_Missense_Mutation_p.S556F|PDE4DIP_uc001eme.1_5'UTR|PDE4DIP_uc001emf.1_Missense_Mutation_p.S180F	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	393	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		ATGTTTCCAAGAAGCCTCTTT	0.438			T	PDGFRB	MPD								148	591					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	1	148891738	148891738	+	RNA	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:148891738C>T	uc009wkv.1	+	9		c.1040C>T								Homo sapiens cDNA, FLJ17483.																		GGATGATAGTCGAGGTAATAC	0.353													6	40					0	0	0.000151284	0	0
CRNN	49860	broad.mit.edu	37	1	152382272	152382272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:152382272C>T	uc001ezx.2	-	3	1360	c.1286G>A	c.(1285-1287)GGG>GAG	p.G429E		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	429					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCTCCCTGCCCTTCTGTCAC	0.597													35	25					0	0	0.00058488	0	0
CRNN	49860	broad.mit.edu	37	1	152382770	152382770	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:152382770T>C	uc001ezx.2	-	3	862	c.788A>G	c.(787-789)GAC>GGC	p.D263G		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	263	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTGTTCTGGTCATTGGTGGC	0.602													6	339					0	0	3.59834e-05	0	0
LCE3E	353145	broad.mit.edu	37	1	152538652	152538652	+	Silent	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:152538652T>C	uc001faa.2	-	2	89	c.33A>G	c.(31-33)CAA>CAG	p.Q11Q		NM_178435	NP_848522	Q5T5B0	LCE3E_HUMAN	late cornified envelope 3E	11					keratinization					ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		Lung(1;0.000294)|LUAD - Lung adenocarcinoma(1;0.00527)|LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)		TGGGTGGGGGTTGGCACTGCT	0.562													46	62					0	0	0.000781405	0	0
NUP210L	91181	broad.mit.edu	37	1	154072549	154072549	+	Silent	SNP	C	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:154072549C>A	uc001fdw.2	-	14	1962	c.1890G>T	c.(1888-1890)CTG>CTT	p.L630L	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Silent_p.L630L	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	630						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TTACTGTTACCAGAGTATGGC	0.383													10	274					0.000978159	0.00927787	0.000978159	1	0
KIAA0907	22889	broad.mit.edu	37	1	155887393	155887393	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:155887393T>G	uc001fmi.1	-	11	1361	c.1337A>C	c.(1336-1338)CAG>CCG	p.Q446P	KIAA0907_uc001fmj.1_Missense_Mutation_p.Q446P|KIAA0907_uc009wrk.1_Missense_Mutation_p.Q303P|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	446	Pro-rich.										0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			gggctggggctggggctgggg	0.448													10	37					0	0	0.000442599	0	0
NTRK1	4914	broad.mit.edu	37	1	156843593	156843593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:156843593C>T	uc001fqh.1	+	8	1075	c.1019C>T	c.(1018-1020)ACC>ATC	p.T340I	NTRK1_uc001fqf.1_Missense_Mutation_p.T310I|NTRK1_uc009wsi.1_Missense_Mutation_p.T45I|NTRK1_uc001fqi.1_Missense_Mutation_p.T340I|NTRK1_uc009wsk.1_Missense_Mutation_p.T340I	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	340	Ig-like C2-type 2.|Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	GCCAATGAGACCGTGCGGCAC	0.647			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			11	10					0	0	0.000151284	0	0
FCRL3	115352	broad.mit.edu	37	1	157667094	157667094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:157667094G>A	uc001frb.2	-	6	972	c.680C>T	c.(679-681)TCC>TTC	p.S227F	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.S227F|FCRL3_uc009wsn.2_Intron|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Missense_Mutation_p.S227F	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	227	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					TCTGAAGAGGGAGAATTGCAG	0.587													38	43					0	0	0.000270559	0	0
OR10R2	343406	broad.mit.edu	37	1	158450621	158450621	+	Silent	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:158450621A>G	uc010pik.1	+	1	954	c.954A>G	c.(952-954)CAA>CAG	p.Q318Q	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	318	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					AGGATGTCCAACTTGCTATCA	0.348													5	28					0	0	8.12818e-05	0	0
OR6N1	128372	broad.mit.edu	37	1	158735546	158735546	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:158735546C>T	uc010piq.1	-	1	927	c.927G>A	c.(925-927)GGG>GGA	p.G309G		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					ATGCCAATATCCCAATTCTCT	0.532													25	35					0	0	0.00106085	0	0
IGSF9	57549	broad.mit.edu	37	1	159906692	159906692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:159906692G>A	uc001fur.2	-	5	605	c.407C>T	c.(406-408)CCT>CTT	p.P136L	IGSF9_uc001fuq.2_Missense_Mutation_p.P136L	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	136	Ig-like 2.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CTGGAATTGAGGGGGTGCTGC	0.637											OREG0013921	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	34					0	0	0.00058488	0	0
CD244	51744	broad.mit.edu	37	1	160801213	160801213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:160801213C>T	uc009wtq.2	-	9	1215	c.1037G>A	c.(1036-1038)GGA>GAA	p.G346E	CD244_uc001fxa.2_Missense_Mutation_p.G341E|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Missense_Mutation_p.G249E	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	346	Cytoplasmic (Potential).				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TTGACTCTTTCCAATCTGCAA	0.333													71	70					0	0	0.000781405	0	0
OLFML2B	25903	broad.mit.edu	37	1	161989878	161989878	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:161989878T>C	uc001gbu.2	-	2	693	c.269A>G	c.(268-270)CAG>CGG	p.Q90R	OLFML2B_uc010pkq.1_Missense_Mutation_p.Q90R	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	90										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			ATTGATCCTCTGGCAGGCATC	0.587													48	44					0	0	0.000781405	0	0
DARS2	55157	broad.mit.edu	37	1	173799810	173799810	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:173799810G>C	uc001gjh.1	+	4	717	c.307G>C	c.(307-309)GTG>CTG	p.V103L		NM_018122	NP_060592	Q6PI48	SYDM_HUMAN	aspartyl-tRNA synthetase 2, mitochondrial	103					tRNA aminoacylation for protein translation	mitochondrial matrix|nucleus	aspartate-tRNA ligase activity|ATP binding|nucleic acid binding			central_nervous_system(2)	2					L-Aspartic Acid(DB00128)	GGCAGCCTCTGTGAAGAAGAT	0.418													4	169					0	0	3.59834e-05	0	0
ASTN1	460	broad.mit.edu	37	1	176833599	176833600	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:176833599_176833600GG>AA	uc001glc.2	-	23	3917_3918	c.3705_3706CC>TT	c.(3703-3708)CTCCTT>CTTTTT	p.L1236F	ASTN1_uc001glb.1_Intron	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1244					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GGTTCCTGAAGGAGTCCATTGC	0.53													16	25					0	0	6.4e-05	0	0
XPR1	9213	broad.mit.edu	37	1	180756930	180756930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:180756930G>A	uc001goi.2	+	3	355	c.163G>A	c.(163-165)GAA>AAA	p.E55K	XPR1_uc009wxm.2_Missense_Mutation_p.E55K|XPR1_uc009wxn.2_Missense_Mutation_p.E55K	NM_004736	NP_004727	Q9UBH6	XPR1_HUMAN	xenotropic and polytropic retrovirus receptor	55	SPX.|Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0						TGCCAAGTTTGAAGAGAAGTT	0.338													50	43					0	0	0.000781405	0	0
LAMC1	3915	broad.mit.edu	37	1	183072500	183072501	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:183072500_183072501CC>TT	uc001gpy.3	+	2	713_714	c.456_457CC>TT	c.(454-459)TTCCAC>TTTTAC	p.H153Y	LAMC1_uc001gpx.2_Missense_Mutation_p.H153Y	NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	153	Laminin N-terminal.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTCTCAAGTTCCACACCAGCCG	0.48													104	151					0	0	6.4e-05	0	0
KCNT2	343450	broad.mit.edu	37	1	196438157	196438157	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:196438157C>T	uc001gtd.1	-	6	486	c.426G>A	c.(424-426)TTG>TTA	p.L142L	KCNT2_uc009wyt.1_5'Flank|KCNT2_uc001gte.1_Silent_p.L142L|KCNT2_uc001gtf.1_Silent_p.L142L|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.L142L|KCNT2_uc009wyv.1_Intron	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	142	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TAATTATTTCCAAGATGAAGG	0.318													13	14					0	0	0.000422831	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204433651	204433651	+	Silent	SNP	G	A	A	rs116461271	by1000genomes	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:204433651G>A	uc001haw.2	-	5	1595	c.1116C>T	c.(1114-1116)CTC>CTT	p.L372L	PIK3C2B_uc010pqv.1_Silent_p.L372L|PIK3C2B_uc001hax.1_Silent_p.L372L|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	372					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			CCTCATCCCCGAGGTGCTCTG	0.517													78	54					0	0	0.000781405	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204438448	204438448	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:204438448G>A	uc001haw.2	-	3	962	c.483C>T	c.(481-483)CCC>CCT	p.P161P	PIK3C2B_uc010pqv.1_Silent_p.P161P|PIK3C2B_uc001hax.1_Silent_p.P161P|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	161	Pro-rich.|Interaction with GRB2.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			TAGAAGCTCGGGGAGGCAGAG	0.557													69	42					0	0	0.000781405	0	0
CR2	1380	broad.mit.edu	37	1	207641906	207641906	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:207641906C>T	uc001hfw.2	+	3	574	c.480C>T	c.(478-480)ATC>ATT	p.I160I	CR2_uc001hfv.2_Silent_p.I160I|CR2_uc009xch.2_Silent_p.I160I|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	160	Sushi 3.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TTCCTATGATCCACAATGGAC	0.423													11	10					0	0	0.00010058	0	0
FAM71A	149647	broad.mit.edu	37	1	212799484	212799484	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:212799484A>T	uc001hjk.2	+	1	1669	c.1265A>T	c.(1264-1266)GAG>GTG	p.E422V	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	422										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		GGCTGCAAGGAGGGGAGGGAA	0.622													16	35					0	0	0.000422831	0	0
PROX1	5629	broad.mit.edu	37	1	214209048	214209048	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:214209048C>T	uc001hkh.2	+	5	2357	c.2085C>T	c.(2083-2085)GCC>GCT	p.A695A		NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	695	Prospero-like.				aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		TTTTCAATGCCATTATCGCAG	0.428													29	41					0	0	0.000409698	0	0
USH2A	7399	broad.mit.edu	37	1	216246251	216246251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:216246251C>T	uc001hku.1	-	29	6224	c.5837G>A	c.(5836-5838)CGA>CAA	p.R1946Q		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1946	Fibronectin type-III 5.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGTACGTCCTCGACTCCAATC	0.363										HNSCC(13;0.011)			12	28					0	0	0.000308642	0	0
MIA3	375056	broad.mit.edu	37	1	222827590	222827591	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:222827590_222827591CG>AT	uc001hnl.2	+	16	4336_4337	c.4327_4328CG>AT	c.(4327-4329)CGG>ATG	p.R1443M	MIA3_uc009xea.1_Missense_Mutation_p.R1220M|MIA3_uc001hnm.2_Missense_Mutation_p.R321M	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1443	Cytoplasmic (Potential).			R -> Q (in Ref. 7; AAH47116).	exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		TTTAGGTGACCGGAATGAGAAG	0.327													21	517					0	0	6.4e-05	0	0
SNAP47	116841	broad.mit.edu	37	1	227947011	227947011	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:227947011G>A	uc001hrf.2	+	3	1362	c.948G>A	c.(946-948)CGG>CGA	p.R316R	SNAP47_uc001hqz.2_Silent_p.R271R|SNAP47_uc001hra.2_Silent_p.R74R|SNAP47_uc001hrd.2_Silent_p.R316R|SNAP47_uc001hre.2_Silent_p.R74R|SNAP47_uc001hrg.1_Silent_p.R271R	NM_053052	NP_444280	Q5SQN1	SNP47_HUMAN	synaptosomal-associated protein, 47kDa	316						endomembrane system|membrane|perinuclear region of cytoplasm				ovary(1)	1						TCCGCCAGCGGTTTATTGGAA	0.458													64	56					0	0	0.000781405	0	0
OBSCN	84033	broad.mit.edu	37	1	228529214	228529214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:228529214C>T	uc009xez.1	+	74	17977	c.17933C>T	c.(17932-17934)TCG>TTG	p.S5978L	OBSCN_uc001hsn.2_Missense_Mutation_p.S5978L|OBSCN_uc001hsr.1_Missense_Mutation_p.S607L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5978	PH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CGGGAGGACTCGGTGCGCAAG	0.642													17	21					0	0	0.00074312	0	0
ACTN2	88	broad.mit.edu	37	1	236923029	236923029	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:236923029G>A	uc001hyf.2	+	19	2511	c.2307G>A	c.(2305-2307)AAG>AAA	p.K769K	ACTN2_uc001hyg.2_Silent_p.K561K|ACTN2_uc009xgi.1_Silent_p.K769K|ACTN2_uc010pxu.1_Silent_p.K458K|ACTN2_uc001hyh.2_Silent_p.K457K	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	769	1; possibly ancestral.|EF-hand 1.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			AACAGAGGAAGAATGGCCTGA	0.428													34	108					0	0	0.000319135	0	0
HNRNPU	3192	broad.mit.edu	37	1	245019253	245019253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:245019253C>T	uc001iaz.1	-	11	2338	c.2120G>A	c.(2119-2121)AGA>AAA	p.R707K	HNRNPU_uc001iaw.1_RNA|HNRNPU_uc001iax.1_RNA|HNRNPU_uc001iay.1_Missense_Mutation_p.R431K|HNRNPU_uc001iba.1_Missense_Mutation_p.R688K	NM_031844	NP_114032	Q00839	HNRPU_HUMAN	heterogeneous nuclear ribonucleoprotein U	707	Gly-rich.				CRD-mediated mRNA stabilization	catalytic step 2 spliceosome|cell surface|CRD-mediated mRNA stability complex|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	ATP binding|DNA binding|protein binding|RNA binding				0	all_cancers(71;6.97e-06)|all_epithelial(71;0.000104)|all_neural(11;0.0269)|Breast(184;0.0545)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0989)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.00868)			TCCACGTCCTCTATGGCCACC	0.403													60	66					0	0	0.000781405	0	0
OR6F1	343169	broad.mit.edu	37	1	247875758	247875758	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:247875758C>T	uc001idj.1	-	1	300	c.300G>A	c.(298-300)CAG>CAA	p.Q100Q		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	100	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CAAAGTACATCTGCAAAAGAC	0.488													23	47					0	0	0.000586117	0	0
OR2L13	284521	broad.mit.edu	37	1	248262935	248262935	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:248262935C>T	uc001ids.2	+	3	595	c.258C>T	c.(256-258)TCC>TCT	p.S86S		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			ACTTCCTGTCCGGCCAGAAAG	0.542													68	62					0	0	0.000781405	0	0
OR2M5	127059	broad.mit.edu	37	1	248308924	248308924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:248308924G>A	uc010pze.1	+	1	475	c.475G>A	c.(475-477)GAT>AAT	p.D159N		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			TGCAATCATTGATGCTGTAGC	0.468													47	43					0	0	0.000781405	0	0
OR2M5	127059	broad.mit.edu	37	1	248309049	248309049	+	Silent	SNP	C	T	T	rs148861955		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:248309049C>T	uc010pze.1	+	1	600	c.600C>T	c.(598-600)TTC>TTT	p.F200F		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			AGGTTCTTTTCATCTGCTGTA	0.433													48	60					0	0	0.000781405	0	0
OR14C36	127066	broad.mit.edu	37	1	248512210	248512210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:248512210C>T	uc010pzl.1	+	1	134	c.134C>T	c.(133-135)ACC>ATC	p.T45I		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	45	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CTCATTGTGACCGTCACCACC	0.438													31	32					0	0	0.000491102	0	0
TUBB8	347688	broad.mit.edu	37	10	93605	93605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:93605G>A	uc001ifi.2	-	4	727	c.727C>T	c.(727-729)CCG>TCG	p.P243S	TUBB8_uc009xhe.2_Missense_Mutation_p.P206S|TUBB8_uc010pzs.1_Missense_Mutation_p.P171S	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	243					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		AGCTGGCCCGGGAAGCGCAGG	0.602													4	8					0	0	0.000602214	0	0
FAM188A	80013	broad.mit.edu	37	10	15879309	15879309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:15879309G>A	uc001iod.1	-	6	691	c.470C>T	c.(469-471)TCG>TTG	p.S157L	FAM188A_uc001ioe.1_5'UTR|FAM188A_uc001iof.1_Missense_Mutation_p.S157L	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	157					apoptosis	nucleus	calcium ion binding			ovary(1)	1						ACTTCTGAACGATCTTTTTCT	0.289													12	16					0	0	0.000978159	0	0
CACNB2	783	broad.mit.edu	37	10	18807280	18807280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:18807280C>T	uc001ipr.2	+	8	880	c.820C>T	c.(820-822)CCG>TCG	p.P274S	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Missense_Mutation_p.P250S|CACNB2_uc001ipt.2_Missense_Mutation_p.P236S|CACNB2_uc010qcl.1_RNA|CACNB2_uc001ipu.2_Missense_Mutation_p.P246S|CACNB2_uc001ipv.2_Missense_Mutation_p.P222S|CACNB2_uc009xka.1_Missense_Mutation_p.P208S|CACNB2_uc001ipw.2_Missense_Mutation_p.P181S|CACNB2_uc001ipx.2_Missense_Mutation_p.P219S|CACNB2_uc009xkb.1_Missense_Mutation_p.S175F|CACNB2_uc010qcm.1_Missense_Mutation_p.P220S|CACNB2_uc001ipz.2_Missense_Mutation_p.P196S|CACNB2_uc001ipy.2_Missense_Mutation_p.P220S|CACNB2_uc010qcn.1_Missense_Mutation_p.P188S|CACNB2_uc010qco.1_Missense_Mutation_p.P188S|CACNB2_uc001iqa.2_Missense_Mutation_p.P226S|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	274					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GCACACTCCTCCGTATGATGT	0.498													21	33					0	0	0.000720815	0	0
NEBL	10529	broad.mit.edu	37	10	21169763	21169763	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:21169763T>G	uc001iqi.2	-	5	837	c.440A>C	c.(439-441)GAG>GCG	p.E147A	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	147	Nebulin 4.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						ATGTTTAACCTCAGGGGGCTC	0.413													18	20					0	0	0.00074312	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24874587	24874587	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:24874587G>T	uc001isb.2	-	26	5118	c.4631C>A	c.(4630-4632)TCT>TAT	p.S1544Y	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1543					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						GCCAGAGTCAGAGCCTGTCTC	0.517													24	24					2.39556e-15	2.31376e-14	0.000375601	1	0
SVIL	6840	broad.mit.edu	37	10	29776190	29776190	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:29776190C>G	uc001iut.1	-	24	5140	c.4387G>C	c.(4387-4389)GCT>CCT	p.A1463P	LOC387647_uc001iuq.1_RNA|SVIL_uc010qdw.1_Missense_Mutation_p.A377P|SVIL_uc001iuu.1_Missense_Mutation_p.A1037P|SVIL_uc009xlc.2_Missense_Mutation_p.A255P	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1463	Gelsolin-like 1.|Interaction with NEB.				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				AGCGCCGAAGCTCGAGGTTCC	0.562													3	8					0	0	6.4e-05	0	0
PARD3	56288	broad.mit.edu	37	10	34673110	34673110	+	Silent	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:34673110A>G	uc010qej.1	-	8	963	c.963T>C	c.(961-963)AAT>AAC	p.N321N	PARD3_uc010qek.1_Silent_p.N321N|PARD3_uc010qel.1_Silent_p.N321N|PARD3_uc010qem.1_Silent_p.N321N|PARD3_uc010qen.1_Silent_p.N321N|PARD3_uc010qeo.1_Silent_p.N321N|PARD3_uc010qep.1_Silent_p.N277N|PARD3_uc010qeq.1_Silent_p.N277N|PARD3_uc001ixo.1_Silent_p.N51N|PARD3_uc001ixp.1_Silent_p.N186N|PARD3_uc001ixq.1_Silent_p.N321N|PARD3_uc001ixr.1_Silent_p.N321N|PARD3_uc001ixt.1_Silent_p.N142N|PARD3_uc001ixu.1_Silent_p.N277N|PARD3_uc001ixs.1_5'UTR	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	321	PDZ 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CAATGCAATCATTCTCACGAA	0.388													17	33					0	0	0.000958276	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453													3	23					0	0	6.4e-05	0	0
ALOX5	240	broad.mit.edu	37	10	45869841	45869841	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:45869841G>A	uc001jce.2	+	1	213	c.114G>A	c.(112-114)CTG>CTA	p.L38L	ALOX5_uc009xmt.2_Silent_p.L38L|ALOX5_uc010qfg.1_Silent_p.L38L	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	38	PLAT.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	AGCACCTGCTGGACAAGCCCT	0.697													4	2					0	0	0.000602214	0	0
ANUBL1	93550	broad.mit.edu	37	10	46121451	46121451	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:46121451T>G	uc001jcp.3	-	7	2062	c.1820A>C	c.(1819-1821)GAA>GCA	p.E607A	ANUBL1_uc001jcl.3_Missense_Mutation_p.E127A|ANUBL1_uc001jcm.3_Missense_Mutation_p.E607A|ANUBL1_uc009xmu.2_Missense_Mutation_p.E533A|ANUBL1_uc001jcn.3_Missense_Mutation_p.E533A|ANUBL1_uc001jco.3_Intron	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	607							zinc ion binding				0						AAAGTTTTCTTCCTGAAAATG	0.443													23	29					0	0	0.00047179	0	0
RBP3	5949	broad.mit.edu	37	10	48387843	48387843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:48387843G>A	uc001jez.2	-	1	3149	c.3035C>T	c.(3034-3036)CCT>CTT	p.P1012L		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1012	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CACAATTCCAGGAATGCGGTC	0.607													25	28					0	0	0.00106085	0	0
C10orf71	118461	broad.mit.edu	37	10	50531317	50531317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:50531317G>A	uc010qgp.1	+	3	1066	c.727G>A	c.(727-729)GCC>ACC	p.A243T		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	243											0						CAATGACACGGCCACCTTATG	0.562													5	6					0	0	3.59834e-05	0	0
MBL2	4153	broad.mit.edu	37	10	54528095	54528095	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:54528095G>A	uc001jjt.2	-	4	614	c.549C>T	c.(547-549)TTC>TTT	p.F183F		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	183	C-type lectin.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						TGATGCCCAGGAAGGCTTCCT	0.512													15	28					0	0	0.000308642	0	0
FAM13C	220965	broad.mit.edu	37	10	61062601	61062601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:61062601G>A	uc001jkn.2	-	6	601	c.467C>T	c.(466-468)TCG>TTG	p.S156L	FAM13C_uc001jko.2_Missense_Mutation_p.S156L|FAM13C_uc010qid.1_Missense_Mutation_p.S73L|FAM13C_uc010qie.1_Missense_Mutation_p.S73L|FAM13C_uc010qif.1_Missense_Mutation_p.S178L|FAM13C_uc001jkp.2_Missense_Mutation_p.S73L	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	156										ovary(2)	2						ATCCTTTGGCGAAATGGCAGT	0.353													33	38					0	0	0.000953801	0	0
SLC16A9	220963	broad.mit.edu	37	10	61443967	61443967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:61443967C>T	uc010qig.1	-	2	532	c.83G>A	c.(82-84)GGA>GAA	p.G28E		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	28	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						TAGTGGGGATCCGTAACACAA	0.473													24	31					0	0	0.000586117	0	0
ANK3	288	broad.mit.edu	37	10	61868653	61868653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:61868653C>T	uc001jky.2	-	27	3300	c.3108G>A	c.(3106-3108)ATG>ATA	p.M1036I	ANK3_uc001jkw.2_Missense_Mutation_p.M170I|ANK3_uc009xpa.2_Missense_Mutation_p.M170I|ANK3_uc001jkx.2_Missense_Mutation_p.M214I|ANK3_uc010qih.1_Missense_Mutation_p.M1037I|ANK3_uc001jkz.3_Missense_Mutation_p.M1030I|ANK3_uc001jla.1_Missense_Mutation_p.M102I|ANK3_uc001jlb.1_Missense_Mutation_p.M554I	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1036	ZU5.			MVEGEGLA -> HGERRGIS (in Ref. 1; AAA64834).	establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTCCTTCCACCATGGGGGGTG	0.507													5	7					0	0	3.59834e-05	0	0
CTNNA3	29119	broad.mit.edu	37	10	67862938	67862938	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:67862938G>A	uc009xpn.1	-	14	2077	c.1954C>T	c.(1954-1956)CAG>TAG	p.Q652*	CTNNA3_uc001jmw.2_Nonsense_Mutation_p.Q652*	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	652					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						CCTTCGGTCTGAATGCTGGTG	0.458													8	21					0	0	0.000274275	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72434327	72434327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:72434327G>A	uc001jrh.2	+	2	98	c.98G>A	c.(97-99)GGA>GAA	p.G33E	ADAMTS14_uc001jrg.2_Missense_Mutation_p.G33E	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	33					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CACCTCTCTGGAAAGCTCAGT	0.577													14	22					0	0	0.000566183	0	0
ADK	132	broad.mit.edu	37	10	76074471	76074471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:76074471G>A	uc001jwi.2	+	4	313	c.241G>A	c.(241-243)GGC>AGC	p.G81S	ADK_uc010qlb.1_Missense_Mutation_p.G81S|ADK_uc001jwj.2_Missense_Mutation_p.G64S|ADK_uc010qlc.1_Missense_Mutation_p.G46S	NM_006721	NP_006712	P55263	ADK_HUMAN	adenosine kinase isoform b	81					purine base metabolic process|purine ribonucleoside salvage	cytosol	adenosine kinase activity|ATP binding|metal ion binding|phosphotransferase activity, alcohol group as acceptor			ovary(1)|skin(1)	2	Prostate(51;0.0112)|Ovarian(15;0.148)				Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Pegademase bovine(DB00061)|Ribavirin(DB00811)	TCATGCTGGTGGCTCTACCCA	0.323													7	7					0	0	0.000157383	0	0
POLR3A	11128	broad.mit.edu	37	10	79784394	79784394	+	Silent	SNP	C	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:79784394C>A	uc001jzn.2	-	5	652	c.558G>T	c.(556-558)GTG>GTT	p.V186V		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	186					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			CAATGGGATCCACCACTTTTT	0.383													21	24					3.51602e-12	3.3805e-11	0.000132079	1	0
DYDC2	84332	broad.mit.edu	37	10	82122713	82122713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:82122713G>A	uc001kca.1	+	4	534	c.154G>A	c.(154-156)GAA>AAA	p.E52K	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Missense_Mutation_p.E52K	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	52							protein binding				0			Colorectal(32;0.229)			CCAGAATAGGGAAAAGAAGAT	0.493													42	48					0	0	0.000589545	0	0
MYOF	26509	broad.mit.edu	37	10	95147624	95147625	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:95147624_95147625GT>AA	uc001kin.2	-	19	1750_1751	c.1627_1628AC>TT	c.(1627-1629)ACT>TTT	p.T543F	MYOF_uc001kio.2_Missense_Mutation_p.T530F	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	543	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						CTCAAGAAAAGTGGCTAATTCA	0.426													27	42					0	0	6.4e-05	0	0
PDE6C	5146	broad.mit.edu	37	10	95400235	95400235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:95400235G>A	uc001kiu.3	+	13	1796	c.1658G>A	c.(1657-1659)AGG>AAG	p.R553K		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	553					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TACACTGTGAGGAAAGGGTAC	0.448													10	11					0	0	0.00010058	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075359	106075359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:106075359G>A	uc001kye.2	-	2	524	c.451C>T	c.(451-453)CGG>TGG	p.R151W	ITPRIP_uc001kyf.2_Missense_Mutation_p.R151W|ITPRIP_uc001kyg.2_Missense_Mutation_p.R151W	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	151						plasma membrane					0						GTGGCCCCCCGGATGCAGCGC	0.672													13	11					0	0	0.00010058	0	0
ATRNL1	26033	broad.mit.edu	37	10	117059641	117059641	+	Missense_Mutation	SNP	C	T	T	rs145512153		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:117059641C>T	uc001lcg.2	+	16	2899	c.2513C>T	c.(2512-2514)CCT>CTT	p.P838L	ATRNL1_uc010qsm.1_Missense_Mutation_p.P13L|ATRNL1_uc010qsn.1_5'Flank	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	838	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		CAGTGGCTTCCTGGCGAACCC	0.458													26	18					0	0	0.00106085	0	0
BTBD16	118663	broad.mit.edu	37	10	124036318	124036318	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr10:124036318C>T	uc001lgc.1	+	3	282	c.31C>T	c.(31-33)CTG>TTG	p.L11L	BTBD16_uc001lgd.1_Silent_p.L10L	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	11										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CAAAGCTCGGCTGGAACGCCG	0.473													18	36					0	0	0.000229342	0	0
PHRF1	57661	broad.mit.edu	37	11	591435	591435	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:591435C>T	uc001lqe.2	+	5	603	c.472C>T	c.(472-474)CGA>TGA	p.R158*	PHRF1_uc010qwc.1_Nonsense_Mutation_p.R158*|PHRF1_uc010qwd.1_Nonsense_Mutation_p.R157*|PHRF1_uc010qwe.1_Nonsense_Mutation_p.R154*|PHRF1_uc009ybz.1_5'Flank	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	158							RNA polymerase binding|zinc ion binding				0						CATTTGTATTCGAGCTCAATT	0.458													10	20					0	0	0.00010058	0	0
MUC6	4588	broad.mit.edu	37	11	1016880	1016881	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:1016880_1016881CC>AA	uc001lsw.2	-	31	5971_5972	c.5920_5921GG>TT	c.(5920-5922)GGG>TTG	p.G1974L		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1974	Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGGACTGCTCCCTGTAGGTGGG	0.584													15	736					0	0	6.4e-05	0	0
TH	7054	broad.mit.edu	37	11	2185590	2185590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:2185590G>A	uc001lvq.2	-	14	1479	c.1460C>T	c.(1459-1461)TCC>TTC	p.S487F	TH_uc001lvp.2_Missense_Mutation_p.S483F|TH_uc001lvr.2_Missense_Mutation_p.S456F|TH_uc010qxj.1_Missense_Mutation_p.S460F|TH_uc001lvs.2_Missense_Mutation_p.S362F|TH_uc001lvt.2_Missense_Mutation_p.S366F	NM_199292	NP_954986	P07101	TY3H_HUMAN	tyrosine hydroxylase isoform a	487					dopamine biosynthetic process from tyrosine|embryonic camera-type eye morphogenesis|epinephrine biosynthetic process|eye photoreceptor cell development|heart morphogenesis|hormone biosynthetic process|learning|locomotory behavior|memory|neurotransmitter biosynthetic process|neurotransmitter secretion|norepinephrine biosynthetic process|pigmentation|regulation of heart contraction|response to ethanol|response to hypoxia|synaptic transmission, dopaminergic|visual perception	cytosol|internal side of plasma membrane|melanosome membrane|nucleus|perikaryon|smooth endoplasmic reticulum	protein binding|tyrosine 3-monooxygenase activity				0		all_epithelial(84;1.46e-23)|Lung NSC(207;4.44e-11)|all_lung(207;1.11e-09)|Ovarian(85;1.78e-06)|Breast(177;1.78e-05)|Medulloblastoma(188;0.0208)|all_neural(188;0.0416)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;8.45e-09)|Lung(200;0.000152)|LUSC - Lung squamous cell carcinoma(625;0.00154)	L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Metyrosine(DB00765)|Tetrahydrobiopterin(DB00360)	GAACTTCACGGAGAAGGGGCG	0.672													21	29					0	0	0.00047179	0	0
TRIM21	6737	broad.mit.edu	37	11	4411508	4411508	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:4411508C>T	uc001lyy.1	-	2	245	c.132G>A	c.(130-132)GGG>GGA	p.G44G		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	44	RING-type.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		CCCCACCTTTCCCAACCTGAG	0.582													41	73					0	0	0.000781405	0	0
OR52M1	119772	broad.mit.edu	37	11	4566853	4566853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:4566853C>T	uc010qyf.1	+	1	433	c.433C>T	c.(433-435)CGT>TGT	p.R145C		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGTGGTGGGTCGTTTGGGGCT	0.522													7	21					0	0	0.000157383	0	0
OR51E2	81285	broad.mit.edu	37	11	4703040	4703040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:4703040C>T	uc001lzk.2	-	2	1146	c.902G>A	c.(901-903)CGG>CAG	p.R301Q		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R301L(1)		lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		AGCCAGCACCCGTGTTCTGAT	0.488													23	26					0	0	0.000295444	0	0
OR56A4	120793	broad.mit.edu	37	11	6023564	6023564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:6023564G>A	uc010qzv.1	-	1	815	c.815C>T	c.(814-816)TCC>TTC	p.S272F		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	220	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAAAGAATAGGAGATAACAAT	0.468													17	16					0	0	0.00074312	0	0
OR56A4	120793	broad.mit.edu	37	11	6023602	6023602	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:6023602C>T	uc010qzv.1	-	1	777	c.777G>A	c.(775-777)TGG>TGA	p.W259*		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCAACAGAGTCCAGCCTGCCA	0.443													15	16					0	0	0.000422831	0	0
TPP1	1200	broad.mit.edu	37	11	6638091	6638091	+	Splice_Site	SNP	C	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:6638091C>G	uc001mel.1	-	7	749	c.688_splice	c.e7-1	p.F230_splice	TPP1_uc001mek.1_Splice_Site	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein						bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		GCTCCAGGAACTATGGAGGGA	0.572													30	49					0	0	0.000184323	0	0
NLRP14	338323	broad.mit.edu	37	11	7083677	7083677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:7083677G>A	uc001mfb.1	+	10	3241	c.2918G>A	c.(2917-2919)GGA>GAA	p.G973E		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	973	LRR 9.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		CAGGATGATGGAGTGAAAATT	0.418													7	10					0	0	8.12818e-05	0	0
OVCH2	341277	broad.mit.edu	37	11	7712505	7712505	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:7712505T>G	uc010rbf.1	-	15	1634	c.1634A>C	c.(1633-1635)AAA>ACA	p.K545T		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		CTTACCTGCTTTAGGAATGAA	0.398													8	9					0	0	0.000157383	0	0
SPON1	10418	broad.mit.edu	37	11	14279389	14279389	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:14279389C>T	uc001mle.2	+	12	1975	c.1437C>T	c.(1435-1437)CCC>CCT	p.P479P		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	479	TSP type-1 1.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		TCAGCGTCCCCTGCCCTGACA	0.637													3	5					0	0	6.4e-05	0	0
HPS5	11234	broad.mit.edu	37	11	18303523	18303523	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:18303523G>A	uc001mod.1	-	22	3581	c.3303C>T	c.(3301-3303)ATC>ATT	p.I1101I	HPS5_uc001moe.1_Silent_p.I987I|HPS5_uc001mof.1_Silent_p.I987I	NM_181507	NP_852608	Q9UPZ3	HPS5_HUMAN	Hermansky-Pudlak syndrome 5 isoform a	1101						cytosol				ovary(1)|pancreas(1)|skin(1)	3						CAATCCTCAGGATATCGCAGG	0.493									Hermansky-Pudlak_syndrome				49	75					0	0	0.000781405	0	0
SLC5A12	159963	broad.mit.edu	37	11	26742962	26742962	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:26742962G>A	uc001mra.2	-	1	613	c.300C>T	c.(298-300)CTC>CTT	p.L100L	SLC5A12_uc001mrb.2_Intron|SLC5A12_uc001mrc.3_Silent_p.L100L	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	100	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						AGAACACAGGGAGAAAGAGCT	0.428													14	16					0	0	0.000422831	0	0
NAT10	55226	broad.mit.edu	37	11	34162704	34162704	+	Silent	SNP	C	T	T	rs142246385		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:34162704C>T	uc001mvk.2	+	25	2905	c.2661C>T	c.(2659-2661)CCC>CCT	p.P887P	NAT10_uc010ren.1_Silent_p.P815P	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	887	Required for localization to the nucleolus and midbody.					nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				TTGAGCTGCCCTCGGGCCAGT	0.532													69	76					0	0	0.000781405	0	0
SYT13	57586	broad.mit.edu	37	11	45267998	45267998	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:45267998G>A	uc001myq.2	-	5	1038	c.912C>T	c.(910-912)CTC>CTT	p.L304L	SYT13_uc009yku.1_Silent_p.L160L	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	304	C2 2.|Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						GCACCACCAGGAGGCGGTTGG	0.577													22	35					0	0	0.000720815	0	0
AMBRA1	55626	broad.mit.edu	37	11	46419074	46419074	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:46419074T>C	uc010rgu.1	-	18	4183	c.3823A>G	c.(3823-3825)AAC>GAC	p.N1275D	AMBRA1_uc010rgt.1_3'UTR|AMBRA1_uc009ylc.1_Missense_Mutation_p.N1246D|AMBRA1_uc001ncu.1_Missense_Mutation_p.N1185D|AMBRA1_uc001ncv.2_Missense_Mutation_p.N1278D|AMBRA1_uc001ncw.2_Missense_Mutation_p.N1156D|AMBRA1_uc001ncx.2_Missense_Mutation_p.N1215D	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	1275					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		AGGTGGTTGTTATTGGTCAAC	0.617													26	34					0	0	0.00047179	0	0
CKAP5	9793	broad.mit.edu	37	11	46797835	46797835	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:46797835G>A	uc001ndi.1	-	24	3071	c.2961C>T	c.(2959-2961)CTC>CTT	p.L987L	CKAP5_uc009ylg.1_Silent_p.L873L|CKAP5_uc001ndj.1_Silent_p.L987L	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	987					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						TTTCCTTTTTGAGCTCTTCAG	0.443													30	27					0	0	0.000339439	0	0
OR4C6	219432	broad.mit.edu	37	11	55433174	55433174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:55433174G>A	uc001nht.3	+	3	797	c.532G>A	c.(532-534)GAT>AAT	p.D178N	OR4C6_uc010rik.1_Missense_Mutation_p.D178N	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CTTTATATGTGATTTGTTTCA	0.448													12	7					0	0	0.000219431	0	0
OR5R1	219479	broad.mit.edu	37	11	56185028	56185028	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:56185028C>T	uc010rji.1	-	1	681	c.681G>A	c.(679-681)AGG>AGA	p.R227R		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TAGAGCGGATCCTTAGGATAG	0.438													24	22					0	0	0.000586117	0	0
SMTNL1	219537	broad.mit.edu	37	11	57317531	57317531	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:57317531G>A	uc009ymh.1	+	8	1485	c.1485G>A	c.(1483-1485)CAG>CAA	p.Q495Q		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	477										ovary(1)	1						CATACATCCAGGAACTGTACC	0.567													13	15					0	0	0.000219431	0	0
GLYAT	10249	broad.mit.edu	37	11	58477446	58477446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:58477446C>T	uc001nnb.2	-	6	839	c.684G>A	c.(682-684)ATG>ATA	p.M228I		NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	228					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	CTGCCATTCTCATCTCTCCAG	0.552													7	9					0	0	8.12818e-05	0	0
TMEM109	79073	broad.mit.edu	37	11	60687340	60687340	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:60687340C>T	uc001nqg.2	+	2	553	c.175C>T	c.(175-177)CGA>TGA	p.R59*	TMEM109_uc001nqh.2_Nonsense_Mutation_p.R59*	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	59						integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						CCAGATAGGTCGATCTGTGCG	0.547													51	43					0	0	0.000781405	0	0
TMEM216	51259	broad.mit.edu	37	11	61161357	61161357	+	Silent	SNP	T	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:61161357T>G	uc010rlj.1	+	3	410	c.117T>G	c.(115-117)GGT>GGG	p.G39G	TMEM216_uc001nrn.1_5'UTR	NM_016499	NP_057583	Q9P0N5	TM216_HUMAN	transmembrane protein 216	39						integral to membrane					0						TATTGGCAGGTGTCCTGCTAC	0.438													18	46					0	0	0.000339439	0	0
DAGLA	747	broad.mit.edu	37	11	61505223	61505223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:61505223C>T	uc001nsa.2	+	15	1690	c.1579C>T	c.(1579-1581)CCC>TCC	p.P527S		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	527	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		AGACCTCGTCCCCAGGTGAGT	0.622													30	27					0	0	0.000279167	0	0
DAGLA	747	broad.mit.edu	37	11	61511196	61511196	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:61511196C>T	uc001nsa.2	+	20	2475	c.2364C>T	c.(2362-2364)TCC>TCT	p.S788S		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	788	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		ACACTGAGTCCCTGTACAGCT	0.682													19	26					0	0	0.000175454	0	0
FADS3	3995	broad.mit.edu	37	11	61643441	61643441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:61643441G>A	uc001nsm.2	-	11	1321	c.1168C>T	c.(1168-1170)CCC>TCC	p.P390S	FADS3_uc001nsn.2_Missense_Mutation_p.P275S	NM_021727	NP_068373	Q9Y5Q0	FADS3_HUMAN	fatty acid desaturase 3	390	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	heme binding|oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water			ovary(1)|pancreas(1)	2						GGCATCCTGGGGAAGAGGCTG	0.657													53	67					0	0	0.000781405	0	0
C11orf48	79081	broad.mit.edu	37	11	62435154	62435154	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:62435154C>G	uc001nue.2	-	4	814	c.379G>C	c.(379-381)GGG>CGG	p.G127R	C11orf48_uc001nuf.2_Missense_Mutation_p.G127R|METTL12_uc001nuh.2_3'UTR|C11orf48_uc010rmd.1_Missense_Mutation_p.G127R	NM_024099	NP_077004	Q9BQE6	CK048_HUMAN	hypothetical protein LOC79081	153											0						TGGTCCTGCCCCCAGCTGAGT	0.532													4	270					0	0	3.59834e-05	0	0
SLC22A9	114571	broad.mit.edu	37	11	63174107	63174107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:63174107G>A	uc001nww.2	+	7	1480	c.1212G>A	c.(1210-1212)ATG>ATA	p.M404I	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	404	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						TGAAATACATGAACCGTCGAG	0.493													8	9					0	0	0.000157383	0	0
PACS1	55690	broad.mit.edu	37	11	66008961	66008961	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:66008961C>T	uc001oha.1	+	22	2627	c.2493C>T	c.(2491-2493)CCC>CCT	p.P831P	PACS1_uc010rou.1_Silent_p.P367P	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	831					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						TGGGCCACCCCGGGGAGCGGA	0.617													5	9					0	0	3.59834e-05	0	0
TBX10	347853	broad.mit.edu	37	11	67402374	67402375	+	Missense_Mutation	DNP	GG	AA	AA	rs148072042		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:67402374_67402375GG>AA	uc001omp.2	-	3	377_378	c.289_290CC>TT	c.(289-291)CCC>TTC	p.P97F		NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	97	T-box.				anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CACCTGGAAGGGGGGGAACATC	0.678													14	32					0	0	6.4e-05	0	0
MRPL21	219927	broad.mit.edu	37	11	68668016	68668017	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:68668016_68668017CC>AA	uc001ooi.2	-	2	170_171	c.145_146GG>TT	c.(145-147)GGA>TTA	p.G49L	MRPL21_uc001ooh.2_5'UTR|MRPL21_uc010rqe.1_Missense_Mutation_p.G49L	NM_181514	NP_852615	Q7Z2W9	RM21_HUMAN	mitochondrial ribosomal protein L21 isoform d	49					translation	mitochondrion|ribosome	RNA binding|structural constituent of ribosome				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TTGATATTACCCTGGTAGATAT	0.376													11	315					0	0	6.4e-05	0	0
FOLR3	2352	broad.mit.edu	37	11	71850013	71850013	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:71850013C>T	uc001ory.1	+	3	353	c.303C>T	c.(301-303)GTC>GTT	p.V101V	FOLR3_uc001orx.1_Missense_Mutation_p.P59S			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	CCAGTGCAGTCCCTGGAAGAA	0.567													11	15					0	0	0.000673444	0	0
C2CD3	26005	broad.mit.edu	37	11	73850731	73850731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:73850731G>A	uc001ouu.2	-	4	853	c.626C>T	c.(625-627)CCA>CTA	p.P209L	C2CD3_uc001ouv.2_Missense_Mutation_p.P209L	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	209						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					AGGCCTTGATGGAACCTGAAA	0.433													38	55					0	0	0.000953801	0	0
FAT3	120114	broad.mit.edu	37	11	92531727	92531727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:92531727C>T	uc001pdj.3	+	9	5565	c.5548C>T	c.(5548-5550)CAT>TAT	p.H1850Y		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1850	Cadherin 16.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTCCATTTTCATGTGCATGT	0.463										TCGA Ovarian(4;0.039)			65	8					0	0	0.000781405	0	0
ATM	472	broad.mit.edu	37	11	108203567	108203567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:108203567C>T	uc001pkb.1	+	53	8252	c.7867C>T	c.(7867-7869)CTT>TTT	p.L2623F	ATM_uc009yxr.1_Missense_Mutation_p.L2623F|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.L1275F|ATM_uc001pkg.1_Missense_Mutation_p.L980F	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2623					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TGTTGAGGCACTTTGTGATGC	0.343			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			27	1					0	0	0.000184323	0	0
RNF214	257160	broad.mit.edu	37	11	117109672	117109672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:117109672C>T	uc001pqt.2	+	3	508	c.463C>T	c.(463-465)CCA>TCA	p.P155S	RNF214_uc001pqu.2_Missense_Mutation_p.P155S|RNF214_uc010rxf.1_Intron	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	155							zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		AGAGAAATCCCCACAAACCTC	0.522													30	1					0	0	0.000339439	0	0
HINFP	25988	broad.mit.edu	37	11	119003888	119003888	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:119003888G>A	uc001pvp.2	+	10	1287	c.1098G>A	c.(1096-1098)AAG>AAA	p.K366K	HINFP_uc001pvq.2_Silent_p.K366K|HINFP_uc001pvr.2_Silent_p.K119K	NM_015517	NP_056332	Q9BQA5	HINFP_HUMAN	MBD2 (methyl-CpG-binding protein)-interacting	366	C2H2-type 9.				DNA damage checkpoint|DNA repair|establishment of protein localization|in utero embryonic development|myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	enzyme binding|histone binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						ACCTTCGCAAGAAGCACCAGT	0.502													61	6					0	0	0.000781405	0	0
OR10G4	390264	broad.mit.edu	37	11	123887186	123887186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:123887186G>A	uc010sac.1	+	1	905	c.905G>A	c.(904-906)AGA>AAA	p.R302K		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TTGAAACTTAGAGACAAAGTA	0.378													22	1					0	0	0.000339439	0	0
OR8G2	26492	broad.mit.edu	37	11	124095664	124095664	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:124095664C>T	uc010saf.1	+	1	267	c.267C>T	c.(265-267)ATC>ATT	p.I89I		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	89						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ATTCCACTATCATTACCCCCA	0.438													44	2					0	0	0.000781405	0	0
OR8B3	390271	broad.mit.edu	37	11	124266609	124266609	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:124266609G>A	uc010saj.1	-	1	639	c.639C>T	c.(637-639)ACC>ACT	p.T213T	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AAATGAGGATGGTACAACTGG	0.423													41	4					0	0	0.000781405	0	0
FEZ1	9638	broad.mit.edu	37	11	125359592	125359592	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:125359592G>A	uc001qbx.2	-	2	234	c.82C>T	c.(82-84)CAG>TAG	p.Q28*	FEZ1_uc010sbc.1_Nonsense_Mutation_p.Q28*|FEZ1_uc001qby.1_Nonsense_Mutation_p.Q28*	NM_005103	NP_005094	Q99689	FEZ1_HUMAN	zygin 1 isoform 1	28					axon guidance|cell adhesion|transport	microtubule|plasma membrane				central_nervous_system(3)|ovary(1)	4	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0934)		TAGAAACACTGGGGCTTCTCC	0.542													48	9					0	0	0.000781405	0	0
JAM3	83700	broad.mit.edu	37	11	134014821	134014821	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:134014821A>T	uc001qhb.1	+	5	703	c.679A>T	c.(679-681)ACG>TCG	p.T227S	JAM3_uc009zcz.1_Missense_Mutation_p.T176S	NM_032801	NP_116190	Q9BX67	JAM3_HUMAN	junctional adhesion molecule 3 precursor	182	Extracellular (Potential).|Ig-like C2-type.				angiogenesis|blood coagulation|regulation of neutrophil chemotaxis	cell-cell contact zone|desmosome|extracellular space|integral to membrane	integrin binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.06e-21)|all_epithelial(12;3.37e-16)|all_lung(97;7.03e-06)|Lung NSC(97;1.67e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0506)|Esophageal squamous(93;0.0566)		Epithelial(10;1.55e-09)|BRCA - Breast invasive adenocarcinoma(10;1.35e-08)|all cancers(11;2.81e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00402)|Lung(977;0.245)		ACCACTGCCCACGGATTCCAG	0.517													24	1					0	0	0.000720815	0	0
GLB1L3	112937	broad.mit.edu	37	11	134158708	134158708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr11:134158708C>T	uc009zdf.2	+	7	1013	c.653C>T	c.(652-654)CCT>CTT	p.P218L	GLB1L3_uc010scs.1_Missense_Mutation_p.P218L|GLB1L3_uc010sct.1_Missense_Mutation_p.P70L	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	218					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		CAGGCAGGCCCTGTCATCGCG	0.522													27	0					0	0	0.000339439	0	0
DYRK4	8798	broad.mit.edu	37	12	4721774	4721774	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:4721774G>C	uc001qmx.2	+	12	1371	c.1211G>C	c.(1210-1212)CGG>CCG	p.R404P	DYRK4_uc009zeh.1_Missense_Mutation_p.R519P|DYRK4_uc001qmy.1_Missense_Mutation_p.R404P|DYRK4_uc001qmz.1_Missense_Mutation_p.R118P|DYRK4_uc001qna.1_Missense_Mutation_p.R41P|DYRK4_uc010ser.1_Missense_Mutation_p.R41P	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	404						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			CATCAGTCTCGGAACCTCAAG	0.542													3	61					0	0	0.00024832	0	0
C12orf69	440087	broad.mit.edu	37	12	14959457	14959457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:14959457G>A	uc001rck.1	-	2	231	c.158C>T	c.(157-159)TCC>TTC	p.S53F	C12orf60_uc001rcj.3_Intron	NM_001013698	NP_001013720	A2RU48	CL069_HUMAN	hypothetical protein LOC440087	53						integral to membrane					0						CATCTCAATGGAGGCCAGCCT	0.443													35	102					0	0	0.000953801	0	0
RERGL	79785	broad.mit.edu	37	12	18234137	18234137	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:18234137C>T	uc001rdq.2	-	6	800	c.606G>A	c.(604-606)AGG>AGA	p.R202R	RERGL_uc001rdr.2_Silent_p.R201R	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	202	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						AAACAGATTTCCTTCTCTTTC	0.333													13	24					0	0	0.000219431	0	0
RERGL	79785	broad.mit.edu	37	12	18237580	18237580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:18237580G>A	uc001rdq.2	-	5	400	c.206C>T	c.(205-207)TCC>TTC	p.S69F	RERGL_uc001rdr.2_Missense_Mutation_p.S68F	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	69	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						ACTTGTGAGGGAGAATTTTGC	0.378													15	67					0	0	0.000566183	0	0
KIAA0528	9847	broad.mit.edu	37	12	22678583	22678583	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:22678583G>A	uc001rfq.2	-	5	634	c.406C>T	c.(406-408)CGA>TGA	p.R136*	KIAA0528_uc010sir.1_5'UTR|KIAA0528_uc010sis.1_Nonsense_Mutation_p.R136*|KIAA0528_uc010sit.1_Nonsense_Mutation_p.R136*|KIAA0528_uc010siu.1_Nonsense_Mutation_p.R136*|KIAA0528_uc001rfr.2_Nonsense_Mutation_p.R136*|KIAA0528_uc009ziy.1_Nonsense_Mutation_p.R136*	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	136							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TGCCTAAATCGATTTAAATCA	0.299													70	134					0	0	0.000781405	0	0
TSPAN11	441631	broad.mit.edu	37	12	31116765	31116765	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:31116765G>C	uc010sju.1	+	3	469	c.89G>C	c.(88-90)GGG>GCG	p.G30A	TSPAN11_uc001rjp.2_Missense_Mutation_p.G30A|TSPAN11_uc010sjv.1_Missense_Mutation_p.G20A	NM_001080509	NP_001073978	A1L157	TSN11_HUMAN	tetraspanin 11	30	Helical; (Potential).					integral to membrane					0	all_lung(12;3.11e-10)|Lung NSC(12;5.24e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					CTGCAGGTCGGGGGAGCAGCC	0.522													3	73					0	0	6.4e-05	0	0
DENND5B	160518	broad.mit.edu	37	12	31600507	31600507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:31600507G>A	uc001rki.1	-	6	2012	c.1826C>T	c.(1825-1827)TCT>TTT	p.S609F	DENND5B_uc001rkh.1_Missense_Mutation_p.S644F|DENND5B_uc009zjq.1_Intron|DENND5B_uc001rkj.2_Missense_Mutation_p.S631F	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	609						integral to membrane				ovary(1)|central_nervous_system(1)	2						CTGATATATAGATGTCCGCAA	0.388													23	51					0	0	0.000586117	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43896194	43896194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:43896194C>T	uc010skx.1	-	4	628	c.628G>A	c.(628-630)GAA>AAA	p.E210K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	210						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AAACTGGTTTCCTTTATTTGA	0.308													134	87					0	0	0.000781405	0	0
FKBP11	51303	broad.mit.edu	37	12	49317594	49317594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:49317594C>T	uc001rsp.2	-	5	478	c.359G>A	c.(358-360)GGA>GAA	p.G120E	FKBP11_uc010sma.1_Missense_Mutation_p.G18E|FKBP11_uc001rsq.3_3'UTR|FKBP11_uc010smb.1_Missense_Mutation_p.G120E	NM_016594	NP_057678	Q9NYL4	FKB11_HUMAN	FK506 binding protein 11 isoform 1 precursor	120	PPIase FKBP-type.				protein folding	integral to membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						TCCCCGTTTTCCATAGGCCAA	0.507													8	60					0	0	0.000442599	0	0
TMBIM6	7009	broad.mit.edu	37	12	50146759	50146759	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:50146759C>T	uc001rux.2	+	3	192	c.60C>T	c.(58-60)ACC>ACT	p.T20T	TMBIM6_uc010sml.1_Silent_p.T20T|TMBIM6_uc001ruy.2_Silent_p.T78T|TMBIM6_uc001ruz.2_Silent_p.T20T	NM_003217	NP_003208	P55061	BI1_HUMAN	testis enhanced gene transcript (BAX inhibitor	20					apoptosis|negative regulation of apoptosis	endoplasmic reticulum|insoluble fraction|integral to plasma membrane|nucleus					0						TTCTTAGAACCCCGTCAACGC	0.433													30	23					0	0	0.000491102	0	0
DIP2B	57609	broad.mit.edu	37	12	51065067	51065067	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:51065067A>G	uc001rwv.2	+	5	682	c.526A>G	c.(526-528)AAC>GAC	p.N176D	DIP2B_uc001rwu.2_Missense_Mutation_p.N176D|DIP2B_uc009zls.1_Missense_Mutation_p.N58D	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	176	Ser-rich.					nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						GTCCTGGATCAACCGTTCAAT	0.532													36	23					0	0	0.000953801	0	0
KRT6A	3853	broad.mit.edu	37	12	52886863	52886863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:52886863G>A	uc001sam.2	-	1	319	c.110C>T	c.(109-111)TCC>TTC	p.S37F		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	37	Head.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCGGGACACGGAGACGCTGCT	0.662													13	53					0	0	0.000219431	0	0
MUCL1	118430	broad.mit.edu	37	12	55251990	55251990	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:55251990G>A	uc001sgk.2	+	4	305	c.237G>A	c.(235-237)TGG>TGA	p.W79*		NM_058173	NP_477521	Q96DR8	MUCL1_HUMAN	small breast epithelial mucin precursor	79						extracellular region|membrane					0						TACCCAAATGGGTTGGGGATC	0.418													11	6					0	0	0.000151284	0	0
OR6C4	341418	broad.mit.edu	37	12	55945204	55945204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:55945204C>T	uc010spp.1	+	1	194	c.194C>T	c.(193-195)TCC>TTC	p.S65F		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CGGAATTTCTCCTTCTTAGAA	0.428													6	18					0	0	8.12818e-05	0	0
OR10P1	121130	broad.mit.edu	37	12	56031197	56031197	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:56031197C>T	uc010spq.1	+	1	522	c.522C>T	c.(520-522)ATC>ATT	p.I174I		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GCCACCCGATCATCCCGCACT	0.577													8	31					0	0	0.000274275	0	0
CDK4	1019	broad.mit.edu	37	12	58145430	58145430	+	Missense_Mutation	SNP	C	A	A	rs104894340		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:58145430C>A	uc001spv.2	-	2	298	c.71G>T	c.(70-72)CGT>CTT	p.R24L	CDK4_uc010ssb.1_5'UTR|CDK4_uc001spw.2_RNA|uc010ssc.1_RNA	NM_000075	NP_000066	P11802	CDK4_HUMAN	cyclin-dependent kinase 4	24	Protein kinase.		R -> H (in CMM3).		cell division|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|positive regulation of fibroblast proliferation|regulation of gene expression|response to drug|S phase of mitotic cell cycle	cyclin-dependent protein kinase holoenzyme complex|cytosol|membrane	ATP binding|cyclin-dependent protein kinase activity|protein binding			lung(1)|breast(1)|central_nervous_system(1)	3	all_cancers(7;4.96e-69)|Lung NSC(6;5.5e-25)|all_lung(6;3.87e-23)|all_epithelial(6;1.66e-15)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;4.21e-120)|all cancers(5;3.75e-83)|BRCA - Breast invasive adenocarcinoma(9;0.0294)			GTGGGGATCACGGGCCTTGTA	0.557			Mis			melanoma 			Hereditary_Melanoma				29	10					2.70662e-09	2.59836e-08	0.000279167	1	0
PTPRB	5787	broad.mit.edu	37	12	70946681	70946681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:70946681G>A	uc001swb.3	-	19	4639	c.4609C>T	c.(4609-4611)CCT>TCT	p.P1537S	PTPRB_uc010sto.1_Missense_Mutation_p.P1447S|PTPRB_uc010stp.1_Missense_Mutation_p.P1447S|PTPRB_uc001swc.3_Missense_Mutation_p.P1755S|PTPRB_uc001swa.3_Missense_Mutation_p.P1667S	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1537	Fibronectin type-III 17.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTGCTGTTAGGATTTTCGGCA	0.468													27	20					0	0	0.00106085	0	0
CCDC59	29080	broad.mit.edu	37	12	82752008	82752008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:82752008G>A	uc001szp.3	-	1	192	c.148C>T	c.(148-150)CGC>TGC	p.R50C	C12orf26_uc001szq.2_5'Flank	NM_014167	NP_054886	Q9P031	TAP26_HUMAN	coiled-coil domain containing 59	50					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding				0						ATACCCTCGCGAACGCTCCCC	0.507													10	27					0	0	0.00010058	0	0
HAL	3034	broad.mit.edu	37	12	96379724	96379724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:96379724G>A	uc001tem.1	-	14	1465	c.1168C>T	c.(1168-1170)CGC>TGC	p.R390C	HAL_uc009zti.1_RNA|HAL_uc010suw.1_Missense_Mutation_p.R182C|HAL_uc010sux.1_Missense_Mutation_p.R390C	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	390					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	TCCTGGACGCGATCACAGAAC	0.423													17	8					0	0	0.000175454	0	0
ARL1	400	broad.mit.edu	37	12	101794879	101794879	+	Silent	SNP	T	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:101794879T>A	uc001tib.2	-	4	446	c.297A>T	c.(295-297)CGA>CGT	p.R99R	ARL1_uc010svn.1_Silent_p.R53R|ARL1_uc010svo.1_RNA|ARL1_uc001tic.2_Silent_p.R99R	NM_001177	NP_001168	P40616	ARL1_HUMAN	ADP-ribosylation factor-like 1	99					small GTPase mediated signal transduction	Golgi membrane	enzyme activator activity|GTP binding|GTPase activity|metal ion binding|protein binding			central_nervous_system(1)	1		Lung NSC(355;2.1e-05)|Breast(359;0.00015)|Myeloproliferative disorder(1001;0.163)		GBM - Glioblastoma multiforme(134;1.67e-09)|BRCA - Breast invasive adenocarcinoma(302;0.0125)		AAATGCCAATTCGGTCTCGGT	0.373													31	53					0	0	0.00058488	0	0
STAB2	55576	broad.mit.edu	37	12	104086619	104086619	+	Silent	SNP	C	T	T	rs146582962	byFrequency	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:104086619C>T	uc001tjw.2	+	31	3513	c.3327C>T	c.(3325-3327)GTC>GTT	p.V1109V		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1109	Extracellular (Potential).|FAS1 3.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCTCCATTGTCGATGGGGACA	0.458													20	11					0	0	0.000720815	0	0
STAB2	55576	broad.mit.edu	37	12	104131519	104131519	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:104131519G>A	uc001tjw.2	+	53	5844	c.5658G>A	c.(5656-5658)CTG>CTA	p.L1886L	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1886	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ATCCCACCCTGGGGGGCCGCT	0.507													21	11					0	0	0.00047179	0	0
CUX2	23316	broad.mit.edu	37	12	111772438	111772438	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:111772438C>T	uc001tsa.1	+	19	3273	c.3120C>T	c.(3118-3120)ATC>ATT	p.I1040I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1040	CUT 3.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TCCAGGAGATCGTGGCCATGT	0.617													5	12					0	0	3.59834e-05	0	0
ATXN2	6311	broad.mit.edu	37	12	111893892	111893892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:111893892G>A	uc001tsj.2	-	23	3847	c.3685C>T	c.(3685-3687)CAT>TAT	p.H1229Y	ATXN2_uc001tsh.2_Missense_Mutation_p.H964Y|ATXN2_uc001tsi.2_Missense_Mutation_p.H922Y|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsg.2_Missense_Mutation_p.H417Y|ATXN2_uc001tsl.1_Missense_Mutation_p.H230Y	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	1229					cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						TGAGAAGGATGGATCGTAAAG	0.557													125	55					0	0	0.000781405	0	0
NOS1	4842	broad.mit.edu	37	12	117749380	117749380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:117749380G>A	uc001twm.1	-	3	1429	c.743C>T	c.(742-744)TCA>TTA	p.S248L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	248					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	AGGTTTGTGTGACTTGCCGTC	0.552													12	55					0	0	0.000422831	0	0
NOS1	4842	broad.mit.edu	37	12	117768500	117768500	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:117768500G>A	uc001twm.1	-	2	1061	c.375C>T	c.(373-375)CCC>CCT	p.P125P		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	125	Interaction with NOSIP (By similarity).				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGGGACCCAGGGGCTGTGTCA	0.652													31	15					0	0	0.000339439	0	0
VSIG10	54621	broad.mit.edu	37	12	118517278	118517278	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:118517278G>A	uc001tws.2	-	4	1132	c.798C>T	c.(796-798)ATC>ATT	p.I266I		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	266	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane					0						ACTTCCCCACGATTACACCTC	0.537													36	20					0	0	0.000374591	0	0
CCDC60	160777	broad.mit.edu	37	12	119942879	119942879	+	Silent	SNP	G	A	A	rs117667301	by1000genomes	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:119942879G>A	uc001txe.2	+	7	1119	c.654G>A	c.(652-654)AAG>AAA	p.K218K	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	218										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		TTTAGACCAAGAAATTCAAAA	0.398													17	11					0	0	0.00074312	0	0
RAB35	11021	broad.mit.edu	37	12	120535157	120535157	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:120535157C>T	uc001txm.1	-	6	643	c.498G>A	c.(496-498)GAG>GAA	p.E166E	RAB35_uc010szg.1_5'UTR|RAB35_uc009zww.1_5'UTR|RAB35_uc010szh.1_Missense_Mutation_p.A125T	NM_006861	NP_006852	Q15286	RAB35_HUMAN	RAB35, member RAS oncogene family	166					cytokinesis|endosome transport|protein transport|small GTPase mediated signal transduction	cell projection membrane|clathrin-coated endocytic vesicle|coated pit|endosome|intercellular bridge|melanosome	GTP binding|GTPase activity|phosphatidylinositol-4,5-bisphosphate binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.248)		GGAGGACCAGCTCCGTGATGC	0.572													8	28					0	0	0.000442599	0	0
NCOR2	9612	broad.mit.edu	37	12	124841263	124841263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:124841263G>A	uc010tba.1	-	23	3307	c.3190C>T	c.(3190-3192)CCC>TCC	p.P1064S	NCOR2_uc010tay.1_Missense_Mutation_p.P1063S|NCOR2_uc010taz.1_Missense_Mutation_p.P1047S|NCOR2_uc010tbb.1_Missense_Mutation_p.P1056S|NCOR2_uc010tbc.1_Missense_Mutation_p.P1046S|NCOR2_uc001ugj.1_Missense_Mutation_p.P1064S	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1064					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GGGGGCACGGGGAAGGGCAGG	0.682													10	5					0	0	0.000442599	0	0
NOC4L	79050	broad.mit.edu	37	12	132632303	132632303	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr12:132632303C>T	uc001ujz.1	+	5	620	c.579C>T	c.(577-579)GCC>GCT	p.A193A		NM_024078	NP_076983	Q9BVI4	NOC4L_HUMAN	nucleolar complex associated 4 homolog	193					rRNA processing	integral to membrane|nuclear membrane|nucleolus	protein binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.2e-08)|Epithelial(86;3.34e-07)|all cancers(50;1.97e-05)		ATGCCGTGGCCCGGGTCACTG	0.682													34	23					0	0	0.000270559	0	0
GJB6	10804	broad.mit.edu	37	13	20797560	20797560	+	Silent	SNP	G	A	A	rs151317854	byFrequency	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr13:20797560G>A	uc001umz.3	-	3	613	c.60C>T	c.(58-60)ATC>ATT	p.I20I	GJB6_uc001unc.3_Silent_p.I20I|GJB6_uc001una.3_Silent_p.I20I|GJB6_uc001und.3_Silent_p.I20I|GJB6_uc001unb.3_Silent_p.I20I	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	20	Cytoplasmic (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		ACACCTTCCCGATGCTGGTGG	0.527													29	53					0	0	0.00058488	0	0
OR11H12	440153	broad.mit.edu	37	14	19378043	19378043	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:19378043C>T	uc010tkp.1	+	1	450	c.450C>T	c.(448-450)ATC>ATT	p.I150I		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	150	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCCTAATATCATGACTGGGC	0.458													16	27					0	0	0.000958276	0	0
OR4M1	441670	broad.mit.edu	37	14	20248864	20248864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:20248864G>A	uc010tku.1	+	1	383	c.383G>A	c.(382-384)CGA>CAA	p.R128Q		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	128	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTATCTGCCGACCCCTCCAC	0.512													27	44					0	0	0.00106085	0	0
OR4M1	441670	broad.mit.edu	37	14	20248867	20248867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:20248867C>T	uc010tku.1	+	1	386	c.386C>T	c.(385-387)CCC>CTC	p.P129L		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCTGCCGACCCCTCCACTAT	0.512													43	30					0	0	0.000781405	0	0
TEP1	7011	broad.mit.edu	37	14	20871927	20871927	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:20871927C>T	uc001vxe.2	-	6	1189	c.1149G>A	c.(1147-1149)CGG>CGA	p.R383R	TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Intron	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	383	TROVE.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CCCGGTGCTTCCGAGGGTTGT	0.617													45	60					0	0	0.000781405	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884614	24884614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:24884614C>T	uc001wpf.3	+	9	3977	c.3659C>T	c.(3658-3660)TCC>TTC	p.S1220F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1220					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						AAGCATTTTTCCCGCTGCATT	0.637													34	33					0	0	0.000491102	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884732	24884732	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:24884732C>T	uc001wpf.3	+	9	4095	c.3777C>T	c.(3775-3777)TCC>TCT	p.S1259S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1259					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TCCGATGGTCCCTCTTGGTTC	0.662													23	15					0	0	0.000375601	0	0
HEATR5A	25938	broad.mit.edu	37	14	31774132	31774132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:31774132G>A	uc001wrf.3	-	26	4416	c.4339C>T	c.(4339-4341)CCT>TCT	p.P1447S	HEATR5A_uc010ami.2_Missense_Mutation_p.P1345S	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1734							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		CACACTGCAGGAAGTTCGGAA	0.418													19	18					0	0	0.000958276	0	0
AKAP6	9472	broad.mit.edu	37	14	33293340	33293340	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:33293340G>A	uc001wrq.2	+	13	6491	c.6321G>A	c.(6319-6321)GGG>GGA	p.G2107G		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2107					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TGAGAAAAGGGGACTTTTATT	0.448													17	13					0	0	0.000422831	0	0
PTGER2	5732	broad.mit.edu	37	14	52793975	52793975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:52793975G>A	uc001wzr.2	+	2	1131	c.880G>A	c.(880-882)GAA>AAA	p.E294K		NM_000956	NP_000947	P43116	PE2R2_HUMAN	prostaglandin E receptor 2 (subtype EP2), 53kDa	294	Extracellular (Potential).					integral to plasma membrane	prostaglandin E receptor activity			lung(1)|breast(1)	2	Breast(41;0.0639)|all_epithelial(31;0.0729)				Alprostadil(DB00770)|Iloprost(DB01088)	TTCCCGAAAGGAAAAATGGGA	0.398													22	29					0	0	0.00047179	0	0
SYT16	83851	broad.mit.edu	37	14	62567163	62567164	+	Missense_Mutation	DNP	GT	AG	AG			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:62567163_62567164GT>AG	uc001xfu.1	+	6	1873_1874	c.1676_1677GT>AG	c.(1675-1677)CGT>CAG	p.R559Q	SYT16_uc010tse.1_Missense_Mutation_p.R117Q	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	559	C2 2.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GAGATGTCCCGTTGCAAGACGT	0.455													4	4					0	0	6.4e-05	0	0
KCNH5	27133	broad.mit.edu	37	14	63417088	63417088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:63417088C>T	uc001xfx.2	-	7	1183	c.1132G>A	c.(1132-1134)GAA>AAA	p.E378K	KCNH5_uc001xfy.2_Missense_Mutation_p.E378K|KCNH5_uc001xfz.1_Missense_Mutation_p.E320K|KCNH5_uc001xga.2_Missense_Mutation_p.E320K	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	378	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTAGTGACTTCATCAATGACC	0.522													10	8					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	14	66480219	66480219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:66480219G>A	uc001xit.2	-	1	414	c.289C>T	c.(289-291)CGC>TGC	p.R97C						SubName: Full=Nuclease sensitive element binding protein-1;																		CCTACACTGCGAAGGTACTTC	0.468													18	23					0	0	0.000375601	0	0
FAM71D	161142	broad.mit.edu	37	14	67671401	67671401	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:67671401C>T	uc001xja.1	+	5	761	c.507C>T	c.(505-507)GCC>GCT	p.A169A	FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	169										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		AATGGGTGGCCCTCATCTCCC	0.473													15	21					0	0	0.000308642	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633483	70633483	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:70633483G>A	uc001xly.2	-	2	2411	c.1657C>T	c.(1657-1659)CTG>TTG	p.L553L	SLC8A3_uc001xlw.2_Silent_p.L553L|SLC8A3_uc001xlx.2_Silent_p.L553L|SLC8A3_uc001xlz.2_Silent_p.L553L|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	553	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GATGTCCGCAGAACCTTGACC	0.493													10	17					0	0	0.000673444	0	0
ALDH6A1	4329	broad.mit.edu	37	14	74537937	74537937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:74537937G>A	uc001xpo.2	-	6	790	c.691C>T	c.(691-693)CCT>TCT	p.P231S	C14orf45_uc001xpm.1_Intron|ALDH6A1_uc010asa.2_Missense_Mutation_p.P76S|ALDH6A1_uc010tuq.1_Missense_Mutation_p.P218S	NM_005589	NP_005580	Q02252	MMSA_HUMAN	aldehyde dehydrogenase 6A1 precursor	231						mitochondrial matrix|nucleus	fatty-acyl-CoA binding|malonate-semialdehyde dehydrogenase (acetylating) activity|methylmalonate-semialdehyde dehydrogenase (acylating) activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00354)	NADH(DB00157)	GTTCCATCAGGGGCACCAGAA	0.458													47	49					0	0	0.000781405	0	0
LTBP2	4053	broad.mit.edu	37	14	74970718	74970718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:74970718G>A	uc001xqa.2	-	31	4880	c.4493C>T	c.(4492-4494)CCG>CTG	p.P1498L		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1498	EGF-like 17; calcium-binding (Potential).				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CCGGCCGTTCGGGCAGAGACC	0.493													19	12					0	0	0.000175454	0	0
ANGEL1	23357	broad.mit.edu	37	14	77255594	77255594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:77255594C>T	uc001xsv.2	-	10	2103	c.1990G>A	c.(1990-1992)GGG>AGG	p.G664R	uc001xsu.1_5'Flank|ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	664										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		ACTTCCATCCCGAAGCTGGCT	0.562													64	74					0	0	0.000781405	0	0
POMT2	29954	broad.mit.edu	37	14	77750141	77750141	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:77750141C>G	uc001xti.2	-	15	1853	c.1652G>C	c.(1651-1653)CGG>CCG	p.R551P	POMT2_uc001xth.1_Missense_Mutation_p.R249P	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	551					protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		GACACATACCCGGATCATGAC	0.483													3	95					0	0	0.000602214	0	0
AHSA1	10598	broad.mit.edu	37	14	77929095	77929095	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:77929095C>T	uc001xtw.2	+	4	625	c.465C>T	c.(463-465)CTC>CTT	p.L155L	AHSA1_uc010tvk.1_Silent_p.L155L	NM_012111	NP_036243	O95433	AHSA1_HUMAN	activator of heat shock 90kDa protein ATPase	155					protein folding|response to stress	cytosol|endoplasmic reticulum	ATPase activator activity|chaperone binding				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0281)		TCAGCACCCTCAAAACAGGTA	0.458													29	32					0	0	0.000339439	0	0
KCNK13	56659	broad.mit.edu	37	14	90650588	90650588	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:90650588C>T	uc001xye.1	+	2	910	c.468C>T	c.(466-468)ATC>ATT	p.I156I		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	156	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				TCGCCTACATCATGAAGTCGT	0.582													40	55					0	0	0.000509022	0	0
CPSF2	53981	broad.mit.edu	37	14	92609402	92609402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:92609402C>T	uc001yah.1	+	9	1141	c.904C>T	c.(904-906)CCG>TCG	p.P302S		NM_017437	NP_059133	Q9P2I0	CPSF2_HUMAN	cleavage and polyadenylation specific factor 2	302					histone mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	hydrolase activity|protein binding|RNA binding			ovary(2)	2		all_cancers(154;0.0766)		COAD - Colon adenocarcinoma(157;0.222)		AAGAAATAATCCGTTTCAGTT	0.393													40	45					0	0	0.00111076	0	0
SERPINA10	51156	broad.mit.edu	37	14	94754765	94754765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:94754765G>A	uc001yct.2	-	3	1316	c.850C>T	c.(850-852)CGT>TGT	p.R284C	SERPINA10_uc001ycu.3_Missense_Mutation_p.R284C	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	284					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		ACATGACAACGAAAATTCTTG	0.507													22	24					0	0	0.000375601	0	0
SERPINA3	12	broad.mit.edu	37	14	95080940	95080940	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:95080940G>A	uc001ydp.2	+	2	241	c.162G>A	c.(160-162)GTG>GTA	p.V54V	SERPINA3_uc001ydo.3_Silent_p.V79V|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Silent_p.V54V|SERPINA3_uc001yds.2_Silent_p.V54V|SERPINA3_uc010avg.2_Silent_p.V54V	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	54					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		CCGCCAACGTGGACTTCGCTT	0.562													52	56					0	0	0.000781405	0	0
BCL11B	64919	broad.mit.edu	37	14	99642133	99642133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:99642133C>T	uc001yga.2	-	4	1307	c.1040G>A	c.(1039-1041)CGA>CAA	p.R347Q	BCL11B_uc001ygb.2_Missense_Mutation_p.R276Q	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	347						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		GCGCATGACTCGGTCGAAGGC	0.726			T	TLX3	T-ALL								11	7					0	0	0.000151284	0	0
ADAM6	8755	broad.mit.edu	37	14	107114004	107114004	+	RNA	SNP	A	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr14:107114004A>C	uc010tyt.1	-	84		c.3869T>G								Parts of antibodies, mostly variable regions.												0						GGCTGGACCAAGCCTTCCCCA	0.577													4	89					0	0	0.000442599	0	0
OR4M2	390538	broad.mit.edu	37	15	22368636	22368636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:22368636C>T	uc010tzu.1	+	1	61	c.61C>T	c.(61-63)CCA>TCA	p.P21S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATCCCAGACTCCAGAGGTCCA	0.363													6	19					0	0	3.59834e-05	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414250	22414250	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:22414250G>A	uc001yuf.2	+	1	549	c.549G>A	c.(547-549)AGG>AGA	p.R183R		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GCCCCTTCAGGGCTTTCCCAG	0.453													19	30					0	0	0.000229342	0	0
C15orf2	23742	broad.mit.edu	37	15	24921390	24921390	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:24921390C>T	uc001ywo.2	+	1	850	c.376C>T	c.(376-378)CTG>TTG	p.L126L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	126					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GTTCACTCTCCTGCTGCCTTC	0.642													29	38					0	0	0.000814825	0	0
C15orf2	23742	broad.mit.edu	37	15	24922455	24922455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:24922455G>A	uc001ywo.2	+	1	1915	c.1441G>A	c.(1441-1443)GGA>AGA	p.G481R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	481	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TAATGAGAAAGGAGGCTCTTA	0.498													82	86					0	0	0.000781405	0	0
HERC2	8924	broad.mit.edu	37	15	28502305	28502305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:28502305G>A	uc001zbj.2	-	17	2525	c.2419C>T	c.(2419-2421)CGG>TGG	p.R807W	HERC2_uc001zbl.1_Missense_Mutation_p.R502W	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	807					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding	p.R807Q(1)		ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTCACCTGCCGAAGCAGGAGA	0.562													46	33					0	0	0.000781405	0	0
PGBD4	161779	broad.mit.edu	37	15	34395873	34395873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:34395873G>A	uc001zho.2	+	1	1600	c.1141G>A	c.(1141-1143)GAA>AAA	p.E381K	C15orf24_uc001zhm.2_5'Flank|C15orf24_uc001zhn.2_5'Flank	NM_152595	NP_689808	Q96DM1	PGBD4_HUMAN	piggyBac transposable element derived 4	381											0		all_lung(180;1.76e-08)		all cancers(64;1.22e-17)|GBM - Glioblastoma multiforme(113;1.78e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0242)		ATTCTGTGGTGAACTTATGGC	0.413													55	64					0	0	0.000781405	0	0
FBN1	2200	broad.mit.edu	37	15	48787750	48787750	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:48787750C>G	uc001zwx.1	-	21	2783	c.2455G>C	c.(2455-2457)GGA>CGA	p.G819R		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	819	EGF-like 13; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TTGCAGACTCCATTAATGCAA	0.373													4	238					0	0	0.000602214	0	0
PRTG	283659	broad.mit.edu	37	15	55929375	55929375	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:55929375G>A	uc002adg.2	-	15	2664	c.2616C>T	c.(2614-2616)CAC>CAT	p.H872H		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	872	Fibronectin type-III 5.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TACCTTCACGGTGTAAGACCT	0.398													51	48					0	0	0.000781405	0	0
CILP	8483	broad.mit.edu	37	15	65490536	65490536	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:65490536C>T	uc002aon.2	-	9	2269	c.2088G>A	c.(2086-2088)GTG>GTA	p.V696V		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	696					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						ACCAGAGTTTCACTGTGGATA	0.478													32	61					0	0	0.00058488	0	0
HCN4	10021	broad.mit.edu	37	15	73622119	73622119	+	Missense_Mutation	SNP	C	T	T	rs146714274		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:73622119C>T	uc002avp.2	-	4	2379	c.1385G>A	c.(1384-1386)GGG>GAG	p.G462E		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	462	Extracellular (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GTACTGCTTCCCCCAGGAGTT	0.622													11	17					0	0	0.00010058	0	0
CSK	1445	broad.mit.edu	37	15	75091219	75091219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:75091219C>T	uc010bkb.1	+	5	365	c.182C>T	c.(181-183)CCA>CTA	p.P61L	CSK_uc010bka.2_Nonsense_Mutation_p.Q164*|CSK_uc002ays.2_Missense_Mutation_p.P61L|CSK_uc010bkc.1_5'Flank	NM_001127190	NP_001120662	P41240	CSK_HUMAN	c-src tyrosine kinase	61	Interaction with PTPN8 (By similarity).|SH3.				blood coagulation|epidermal growth factor receptor signaling pathway|T cell costimulation|T cell receptor signaling pathway	centrosome|cytosol|Golgi apparatus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein C-terminus binding			lung(2)|central_nervous_system(1)	3						GGCATCATCCCAGCCAACTAC	0.632													20	22					0	0	0.000586117	0	0
KIAA1024	23251	broad.mit.edu	37	15	79749371	79749371	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:79749371C>T	uc002bew.1	+	2	957	c.882C>T	c.(880-882)CCC>CCT	p.P294P	KIAA1024_uc010unk.1_Silent_p.P294P	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	294						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						GAAAGGAACCCCACAAGCCAC	0.507													50	61					0	0	0.000781405	0	0
KIAA1199	57214	broad.mit.edu	37	15	81201497	81201497	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:81201497G>A	uc002bfw.1	+	13	1907	c.1647G>A	c.(1645-1647)CAG>CAA	p.Q549Q	KIAA1199_uc010unn.1_Silent_p.Q549Q	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	549										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						ATATGGGACAGCAGCTGGTGG	0.557													30	25					0	0	0.000409698	0	0
AP3B2	8120	broad.mit.edu	37	15	83346471	83346471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:83346471G>A	uc010uoh.1	-	12	1507	c.1330C>T	c.(1330-1332)CGT>TGT	p.R444C	AP3B2_uc010uoi.1_Missense_Mutation_p.R444C|AP3B2_uc010uoj.1_Missense_Mutation_p.R412C|AP3B2_uc010uog.1_Missense_Mutation_p.R80C	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	444					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			CAGGTGTCACGGACTCGGCCG	0.547													12	8					0	0	0.000978159	0	0
KLHL25	64410	broad.mit.edu	37	15	86311557	86311557	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:86311557G>A	uc002bly.2	-	2	1688	c.1485C>T	c.(1483-1485)TTC>TTT	p.F495F		NM_022480	NP_071925	Q9H0H3	ENC2_HUMAN	BTB/POZ KELCH domain protein	495	Kelch 5.					cytoplasm				ovary(2)	2						CTCCCATGATGAAGATCTGGC	0.617													44	68					0	0	0.000781405	0	0
PRC1	9055	broad.mit.edu	37	15	91519967	91519968	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:91519967_91519968CG>AT	uc002bqm.2	-	9	1298_1299	c.1141_1142CG>AT	c.(1141-1143)CGA>ATA	p.R381I	PRC1_uc002bqn.2_Missense_Mutation_p.R381I|PRC1_uc002bqo.2_Missense_Mutation_p.R381I|PRC1_uc010uqs.1_Missense_Mutation_p.R340I	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	381	Spectrin-fold.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					ATTTCCTCCTCGGTTTGTAAAT	0.371													15	728					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	15	102292820	102292820	+	Silent	SNP	G	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr15:102292820G>C	uc010usj.1	+	4	467	c.408G>C	c.(406-408)ACG>ACC	p.T136T	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		GCGTGGGAACGAGAAGACACT	0.592													3	13					0	0	0.00024832	0	0
HBZ	3050	broad.mit.edu	37	16	202988	202988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:202988C>T	uc002cft.1	+	1	135	c.80C>T	c.(79-81)ACC>ATC	p.T27I		NM_005332	NP_005323	P02008	HBAZ_HUMAN	hemoglobin, zeta	27						hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		all_cancers(16;4.28e-07)|all_epithelial(16;2.09e-06)|Hepatocellular(16;0.000325)|Lung NSC(18;0.0104)|all_lung(18;0.0239)				ACCATCGGCACCGAGACTCTG	0.552													9	11					0	0	0.000274275	0	0
CCDC78	124093	broad.mit.edu	37	16	775578	775578	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:775578G>A	uc002cjg.2	-	4	376	c.270C>T	c.(268-270)ATC>ATT	p.I90I	CCDC78_uc002cjf.2_5'Flank|CCDC78_uc002cji.3_Silent_p.I164I|CCDC78_uc002cjj.3_Intron|CCDC78_uc002cjh.2_5'UTR|CCDC78_uc010uuo.1_Silent_p.I90I|CCDC78_uc002cjk.2_Silent_p.I90I|HAGHL_uc002cjl.1_5'Flank|HAGHL_uc002cjm.1_5'Flank|HAGHL_uc002cjn.1_5'Flank|HAGHL_uc002cjo.1_5'Flank|HAGHL_uc010uup.1_5'Flank	NM_001031737	NP_001026907	A2IDD5	CCD78_HUMAN	coiled-coil domain containing 78	90	Potential.									central_nervous_system(1)	1		Hepatocellular(780;0.0218)				CCAGCCGAAGGATCTGTGGGA	0.672													16	15					0	0	0.000566183	0	0
MSLNL	401827	broad.mit.edu	37	16	824857	824857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:824857G>A	uc002cjz.1	-	7	1715	c.1715C>T	c.(1714-1716)GCC>GTC	p.A572V		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	221	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						CTTCCCACCGGCCAGCAGTGA	0.711													10	12					0	0	0.000442599	0	0
TPSD1	23430	broad.mit.edu	37	16	1306606	1306606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:1306606C>T	uc002clb.1	+	2	181	c.172C>T	c.(172-174)CGC>TGC	p.R58C	TPSD1_uc010brm.1_5'UTR	NM_012217	NP_036349	Q9BZJ3	TRYD_HUMAN	tryptase delta 1 precursor	58	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				CCTGAGAGTCCGCGGCCCATA	0.692													37	44					0	0	0.000319135	0	0
MEFV	4210	broad.mit.edu	37	16	3306433	3306433	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:3306433T>C	uc002cun.1	-	1	195	c.155A>G	c.(154-156)AAG>AGG	p.K52R		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	52	DAPIN.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	AGTGGCCATCTTCACCGGCCT	0.602													52	51					0	0	0.000781405	0	0
ZNF500	26048	broad.mit.edu	37	16	4810525	4810525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:4810525G>A	uc002cxp.1	-	5	975	c.728C>T	c.(727-729)CCA>CTA	p.P243L	ZNF500_uc002cxo.1_Missense_Mutation_p.P35L|ZNF500_uc010uxt.1_Missense_Mutation_p.P243L	NM_021646	NP_067678	O60304	ZN500_HUMAN	zinc finger protein 500	243	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						CCGCTGAGCTGGGTCCATGCA	0.587													26	38					0	0	0.000814825	0	0
FAM86A	196483	broad.mit.edu	37	16	5135648	5135648	+	Silent	SNP	C	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:5135648C>G	uc002cyo.2	-	8	1027	c.978G>C	c.(976-978)CTG>CTC	p.L326L	ALG1_uc002cyj.2_3'UTR|ALG1_uc002cym.2_3'UTR|ALG1_uc002cyn.2_3'UTR|ALG1_uc010bue.2_3'UTR|ALG1_uc010uxy.1_3'UTR|FAM86A_uc002cyp.2_Silent_p.L292L	NM_201400	NP_958802	Q96G04	FA86A_HUMAN	hypothetical protein LOC196483 isoform 1	326											0						GGGTGAGATTCAGCATTGCCA	0.488													50	74					0	0	0.000781405	0	0
MKL2	57496	broad.mit.edu	37	16	14354990	14354990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:14354990C>T	uc010uza.1	+	17	3144	c.2989C>T	c.(2989-2991)CCT>TCT	p.P997S	MKL2_uc002dcg.2_Missense_Mutation_p.P947S|MKL2_uc002dcj.2_Missense_Mutation_p.P242S	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	986					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						CAATGAAATTCCTCCACTACA	0.468													16	24					0	0	0.00074312	0	0
GDE1	51573	broad.mit.edu	37	16	19516342	19516342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:19516342C>T	uc002dgh.2	-	5	873	c.709G>A	c.(709-711)GGG>AGG	p.G237R	GDE1_uc002dgi.2_Missense_Mutation_p.G127R	NM_016641	NP_057725	Q9NZC3	GDE1_HUMAN	glycerophosphodiester phosphodiesterase 1	237	Lumenal (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|glycerophosphoinositol glycerophosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3						CGTGGTTTCCCATCTCCTGTA	0.398													63	60					0	0	0.000781405	0	0
PDILT	204474	broad.mit.edu	37	16	20387405	20387405	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:20387405G>A	uc002dhc.1	-	4	751	c.528C>T	c.(526-528)ATC>ATT	p.I176I		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	176					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						AGAAGCCAACGATGACCAAGG	0.522													12	26					0	0	0.000219431	0	0
ACSM2A	123876	broad.mit.edu	37	16	20491949	20491949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:20491949G>A	uc010bwe.2	+	12	1575	c.1336G>A	c.(1336-1338)GAC>AAC	p.D446N	ACSM2A_uc010vax.1_Missense_Mutation_p.D367N|ACSM2A_uc002dhf.3_Missense_Mutation_p.D446N|ACSM2A_uc002dhg.3_Missense_Mutation_p.D446N|ACSM2A_uc010vay.1_Missense_Mutation_p.D367N|ACSM2A_uc002dhh.3_Missense_Mutation_p.D76N	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	446		ATP.			fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GCTCCTTGGAGACCGGGGAAT	0.493													23	21					0	0	0.000279167	0	0
ACSM2B	348158	broad.mit.edu	37	16	20554530	20554530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:20554530C>T	uc002dhj.3	-	12	1546	c.1336G>A	c.(1336-1338)GAC>AAC	p.D446N	ACSM2B_uc002dhk.3_Missense_Mutation_p.D446N|ACSM2B_uc010bwf.1_Missense_Mutation_p.D446N	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	446		ATP (By similarity).			fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						ATTCCCCGGTCTCCAAGGAGC	0.493													24	113					0	0	0.000184323	0	0
ACSM1	116285	broad.mit.edu	37	16	20634825	20634825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:20634825C>T	uc002dhm.1	-	13	1785	c.1717G>A	c.(1717-1719)GAG>AAG	p.E573K	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.E573K	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	573					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TGACCAGTCTCCTTTTTCCGA	0.493													34	48					0	0	0.000509022	0	0
KCTD13	253980	broad.mit.edu	37	16	29923186	29923186	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:29923186G>A	uc002duv.2	-	4	698	c.507C>T	c.(505-507)CCC>CCT	p.P169P	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|ASPHD1_uc002duu.3_Intron|ASPHD1_uc010bzi.2_Intron|KCTD13_uc010vee.1_RNA	NM_178863	NP_849194	Q8WZ19	BACD1_HUMAN	potassium channel tetramerisation domain	169					cell migration|DNA replication|negative regulation of Rho protein signal transduction|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|nucleus|voltage-gated potassium channel complex	GTP-Rho binding|voltage-gated potassium channel activity				0						GCTTCACCACGGGCTGGCGGG	0.677													18	23					0	0	0.000175454	0	0
ITGAM	3684	broad.mit.edu	37	16	31309201	31309201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:31309201G>A	uc002ebq.2	+	14	1731	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K	ITGAM_uc002ebr.2_Missense_Mutation_p.E546K|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_Intron	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	545	FG-GAP 6.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						GGCCCCAGGAGAGGAGGACAA	0.622													31	33					0	0	0.000953801	0	0
C16orf78	123970	broad.mit.edu	37	16	49433070	49433070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:49433070C>T	uc002efr.2	+	5	722	c.679C>T	c.(679-681)CGG>TGG	p.R227W		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	227										central_nervous_system(1)	1						GGAGAACATTCGGACCTTGCT	0.453													39	40					0	0	0.000319135	0	0
SALL1	6299	broad.mit.edu	37	16	51173808	51173808	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:51173808G>A	uc010vgs.1	-	2	2356	c.2325C>T	c.(2323-2325)TTC>TTT	p.F775F	SALL1_uc010vgr.1_Silent_p.F678F|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	775	C2H2-type 5.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CAGCGTTCGTGAACTTCTTCT	0.557													27	38					0	0	0.000409698	0	0
MMP2	4313	broad.mit.edu	37	16	55517983	55517983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:55517983C>T	uc002ehz.3	+	3	747	c.436C>T	c.(436-438)CGT>TGT	p.R146C	MMP2_uc010vhd.1_Missense_Mutation_p.R70C|MMP2_uc010ccc.2_Missense_Mutation_p.R96C	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	146	Collagenase-like 1.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	TGCCTTTGCTCGTGCCTTCCA	0.473													33	52					0	0	0.000692331	0	0
SLC12A3	6559	broad.mit.edu	37	16	56918052	56918052	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:56918052G>A	uc010ccm.2	+	14	1790	c.1761G>A	c.(1759-1761)TGG>TGA	p.W587*	SLC12A3_uc002ekd.3_Nonsense_Mutation_p.W587*|SLC12A3_uc010ccn.2_Nonsense_Mutation_p.W586*	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	587	Helical; (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	TCACCTGGTGGGCGGCCCTCA	0.597													33	33					0	0	0.00058488	0	0
CX3CL1	6376	broad.mit.edu	37	16	57416246	57416246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:57416246G>A	uc002eli.2	+	3	563	c.496G>A	c.(496-498)GGG>AGG	p.G166R		NM_002996	NP_002987	P78423	X3CL1_HUMAN	chemokine (C-X3-C motif) ligand 1 precursor	166	Mucin-like stalk.|Extracellular (Potential).				cell adhesion|cytokine-mediated signaling pathway|defense response|immune response|leukocyte adhesive activation|positive regulation of calcium-independent cell-cell adhesion|positive regulation of inflammatory response	cell surface|extracellular space|integral to membrane|plasma membrane	chemokine activity				0						TGGTTCCTCAGGGACCAGGCT	0.672													21	29					0	0	0.000175454	0	0
CNGB1	1258	broad.mit.edu	37	16	57921948	57921948	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:57921948C>A	uc002emt.2	-	32	3338	c.3273G>T	c.(3271-3273)AAG>AAT	p.K1091N	CNGB1_uc010cdh.2_Missense_Mutation_p.K1085N	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	1091	Cytoplasmic (Potential).|cAMP (By similarity).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						TCTTCTCCTCCTTGGGCTTAT	0.567													29	33					3.1745e-13	3.05678e-12	0.000227799	1	0
ZNF319	57567	broad.mit.edu	37	16	58031190	58031190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:58031190G>A	uc002emx.1	-	2	1603	c.980C>T	c.(979-981)CCC>CTC	p.P327L		NM_020807	NP_065858	Q9P2F9	ZN319_HUMAN	zinc finger protein 319	327	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAGGTCCGAGGGCCGCTTGAA	0.662													12	18					0	0	0.00010058	0	0
CNOT1	23019	broad.mit.edu	37	16	58583759	58583759	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:58583759C>T	uc002env.2	-	25	3679	c.3386G>A	c.(3385-3387)TGG>TAG	p.W1129*	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Nonsense_Mutation_p.W1124*|CNOT1_uc002enx.2_Nonsense_Mutation_p.W1129*|CNOT1_uc002enz.1_Nonsense_Mutation_p.W558*|CNOT1_uc010vik.1_Nonsense_Mutation_p.W125*|SNORA46_uc002eny.1_5'Flank	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1129					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		CTGTGAAACCCAAGGCATAAA	0.388													26	39					0	0	0.000279167	0	0
CDH8	1006	broad.mit.edu	37	16	61851400	61851400	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:61851400G>A	uc002eog.1	-	7	1512	c.1260C>T	c.(1258-1260)ATC>ATT	p.I420I	CDH8_uc002eoh.2_Silent_p.I189I	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	420	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GACTGGAAGTGATATCAGGGT	0.428													7	4					0	0	0.000157383	0	0
SLC12A4	6560	broad.mit.edu	37	16	67981622	67981622	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:67981622C>T	uc002euz.2	-	15	2058	c.1917G>A	c.(1915-1917)CTG>CTA	p.L639L	SLC12A4_uc010ceu.2_Silent_p.L633L|SLC12A4_uc010vkh.1_Silent_p.L608L|SLC12A4_uc010vki.1_Silent_p.L639L|SLC12A4_uc010vkj.1_Silent_p.L641L|SLC12A4_uc002eva.2_Silent_p.L639L|SLC12A4_uc010cev.1_5'Flank|SLC12A4_uc002evb.2_RNA	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	639	Helical; (Potential).				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	GCATGGCCACCAGGGCATAGT	0.617													4	4					0	0	0.00024832	0	0
HYDIN	54768	broad.mit.edu	37	16	70926280	70926280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:70926280G>A	uc002ezr.2	-	56	9526	c.9398C>T	c.(9397-9399)CCT>CTT	p.P3133L		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3134										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCGCAGAACAGGCTGGTGCTC	0.483													22	83					0	0	0.000878237	0	0
ZFHX3	463	broad.mit.edu	37	16	72831252	72831252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:72831252G>A	uc002fck.2	-	9	6002	c.5329C>T	c.(5329-5331)CTT>TTT	p.L1777F	ZFHX3_uc002fcl.2_Missense_Mutation_p.L863F	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	1777					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				AAGTGAGGAAGGAGGGTGGGG	0.572													37	48					0	0	0.000270559	0	0
CHST5	23563	broad.mit.edu	37	16	75563490	75563490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:75563490G>A	uc002fei.2	-	3	2188	c.793C>T	c.(793-795)CGC>TGC	p.R265C	CHST5_uc002fej.1_Missense_Mutation_p.R271C	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	265	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						CACACCTCGCGAATCAGGCGC	0.716													37	37					0	0	0.000953801	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353836	77353836	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:77353836G>A	uc002ffc.3	-	16	2861	c.2442C>T	c.(2440-2442)TTC>TTT	p.F814F	ADAMTS18_uc010chc.1_Silent_p.F402F|ADAMTS18_uc002ffe.1_Silent_p.F510F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	814	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGGTCCCAGCGAAGGGGAACT	0.577													16	23					0	0	0.00074312	0	0
ZNF778	197320	broad.mit.edu	37	16	89292028	89292028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:89292028G>A	uc002fmv.2	+	5	649	c.310G>A	c.(310-312)GAG>AAG	p.E104K	ZNF778_uc010vpf.1_RNA|ZNF778_uc002fmw.1_Missense_Mutation_p.E62K|ZNF778_uc010vpg.1_5'UTR	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	104	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		AGCATCAAATGAGACACAGAC	0.358													29	19					0	0	0.000279167	0	0
TCF25	22980	broad.mit.edu	37	16	89977544	89977544	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr16:89977544C>T	uc002fpb.2	+	18	2011	c.1929C>T	c.(1927-1929)AAC>AAT	p.N643N	TCF25_uc002fpc.2_Nonsense_Mutation_p.Q448*|uc010ciy.1_5'Flank	NM_014972	NP_055787	Q9BQ70	TCF25_HUMAN	NULP1	643					heart development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(9;4.71e-08)|Lung NSC(15;0.000192)|all_lung(18;0.000319)|all_neural(9;0.0122)|all_hematologic(23;0.027)		BRCA - Breast invasive adenocarcinoma(80;0.0288)		AGGGCCTGAACAGGCTGATGC	0.657													28	28					0	0	0.00106085	0	0
CAMTA2	23125	broad.mit.edu	37	17	4883054	4883054	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:4883054G>A	uc002gah.1	-	9	1671	c.1563C>T	c.(1561-1563)ATC>ATT	p.I521I	CAMTA2_uc010cku.1_Silent_p.I544I|CAMTA2_uc002gag.1_Silent_p.I520I|CAMTA2_uc002gai.1_Silent_p.I523I|CAMTA2_uc010ckv.1_Silent_p.I168I|CAMTA2_uc010vsu.1_Silent_p.I334I	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	521					cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						TCGGAGCAGGGATGCTTGGAG	0.562													59	78					0	0	0.000781405	0	0
ASGR2	433	broad.mit.edu	37	17	7010400	7010400	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:7010400G>A	uc002gep.3	-	7	847	c.582C>T	c.(580-582)TCC>TCT	p.S194S	ASGR2_uc010vtk.1_Silent_p.S31S|ASGR2_uc002gem.1_Silent_p.S133S|ASGR2_uc002gen.1_Silent_p.S175S|ASGR2_uc002geo.1_Silent_p.S189S|ASGR2_uc002ger.3_Silent_p.S194S|ASGR2_uc002geq.3_Silent_p.S170S	NM_001181	NP_001172	P07307	ASGR2_HUMAN	asialoglycoprotein receptor 2 isoform a	194	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway|endocytosis	focal adhesion|integral to membrane|nucleolus	asialoglycoprotein receptor activity|protein binding|sugar binding			ovary(1)	1					Antihemophilic Factor(DB00025)	AGGCCTTCCCGGAGTGAGAGA	0.632													31	43					0	0	0.000953801	0	0
CLDN7	1366	broad.mit.edu	37	17	7163815	7163815	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:7163815A>C	uc002gfm.3	-	4	947	c.514T>G	c.(514-516)TCT>GCT	p.S172A	CLDN7_uc010cmc.2_Silent_p.G143G|CLDN7_uc002gfn.3_Missense_Mutation_p.S172A	NM_001307	NP_001298	O95471	CLD7_HUMAN	claudin 7	172	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|lateral plasma membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1						ACTAGGGCAGACCCTGCCCAG	0.572													4	10					0	0	3.59834e-05	0	0
NEURL4	84461	broad.mit.edu	37	17	7222489	7222489	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:7222489G>A	uc002gga.1	-	22	3571	c.3564C>T	c.(3562-3564)TCC>TCT	p.S1188S	NEURL4_uc002gfy.1_RNA|GPS2_uc002gfz.1_5'UTR|NEURL4_uc002ggb.1_Silent_p.S1186S	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	1188	NHR 6.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCAGGACAAGGGAAGATGTCC	0.602													22	35					0	0	0.00047179	0	0
ZBTB4	57659	broad.mit.edu	37	17	7366122	7366123	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:7366122_7366123GG>AA	uc002ghc.3	-	4	2428_2429	c.2178_2179CC>TT	c.(2176-2181)CACCGA>CATTGA	p.R727*	ZBTB4_uc002ghd.3_Nonsense_Mutation_p.R727*	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	727	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		TCCCCGCATCGGTGCCTCCGCT	0.703													30	26					0	0	6.4e-05	0	0
TP53	7157	broad.mit.edu	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	A	A	rs28934573		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:7577559G>A	uc002gim.2	-	7	916	c.722C>T	c.(721-723)TCC>TTC	p.S241F	TP53_uc002gig.1_Missense_Mutation_p.S241F|TP53_uc002gih.2_Missense_Mutation_p.S241F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.S109F|TP53_uc010cng.1_Missense_Mutation_p.S109F|TP53_uc002gii.1_Missense_Mutation_p.S109F|TP53_uc010cnh.1_Missense_Mutation_p.S241F|TP53_uc010cni.1_Missense_Mutation_p.S241F|TP53_uc002gij.2_Missense_Mutation_p.S241F|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.S148F|TP53_uc002gio.2_Missense_Mutation_p.S109F	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	241	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		S -> A (in sporadic cancers; somatic mutation).|S -> P (in sporadic cancers; somatic mutation).|S -> C (in sporadic cancers; somatic mutation).|S -> Y (in sporadic cancers; somatic mutation).|S -> T (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.S241F(73)|p.S241C(24)|p.S241fs*6(8)|p.0?(7)|p.S241Y(7)|p.C242fs*5(6)|p.S241A(6)|p.S241del(5)|p.S241T(5)|p.N239_C242delNSSC(3)|p.S241S(3)|p.S241P(3)|p.S241fs*22(2)|p.Y236_M243delYMCNSSCM(1)|p.N239fs*4(1)|p.C238_M246delCNSSCMGGM(1)|p.S241_C242insX(1)|p.S241_G245delSCMGG(1)|p.C238fs*21(1)|p.S241fs*7(1)|p.H233_C242del10(1)|p.N239_C242>S(1)|p.S241fs*23(1)|p.N239_C242del(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCCCATGCAGGAACTGTTACA	0.572		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			32	49					0	0	0.000374591	0	0
TRAPPC1	58485	broad.mit.edu	37	17	7833959	7833959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:7833959G>A	uc002gjo.1	-	4	519	c.403C>T	c.(403-405)CGC>TGC	p.R135C	KCNAB3_uc002gjm.1_5'Flank|KCNAB3_uc010vul.1_5'Flank|CNTROB_uc002gjp.2_5'Flank|CNTROB_uc002gjq.2_5'Flank	NM_021210	NP_067033	Q9Y5R8	TPPC1_HUMAN	trafficking protein particle complex 1	135					ER to Golgi vesicle-mediated transport	endoplasmic reticulum					0		Prostate(122;0.173)				GGCAGAGAGCGAACATAGGAG	0.577													26	32					0	0	0.000184323	0	0
MYH8	4626	broad.mit.edu	37	17	10321977	10321977	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:10321977G>A	uc002gmm.2	-	5	591	c.496C>T	c.(496-498)CAG>TAG	p.Q166*	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	166	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						AACATGAACTGATAGGCATTG	0.507									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				63	75					0	0	0.000781405	0	0
MYH1	4619	broad.mit.edu	37	17	10419889	10419889	+	Missense_Mutation	SNP	C	T	T	rs61730792	byFrequency	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:10419889C>T	uc002gmo.2	-	3	165	c.71G>A	c.(70-72)CGA>CAA	p.R24Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	24	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GGCTTCAATTCGCTCCCTTTC	0.507													17	24					0	0	0.000566183	0	0
MYH3	4621	broad.mit.edu	37	17	10538846	10538846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:10538846G>A	uc002gmq.1	-	29	4087	c.4010C>T	c.(4009-4011)TCC>TTC	p.S1337F		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1337	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						GTCGTGGCGGGAGGACTGCAG	0.557													59	70					0	0	0.000781405	0	0
DNAH9	1770	broad.mit.edu	37	17	11523065	11523065	+	Silent	SNP	G	A	A	rs147288160		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:11523065G>A	uc002gne.2	+	6	1385	c.1317G>A	c.(1315-1317)TTG>TTA	p.L439L		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	439	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTGTGCGATTGGATGGCTTCC	0.517													41	38					0	0	0.000437636	0	0
VTN	7448	broad.mit.edu	37	17	26696553	26696553	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:26696553C>T	uc002hbc.2	-	3	653	c.504G>A	c.(502-504)AAG>AAA	p.K168K	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron|SARM1_uc010crl.1_5'Flank	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	168	Hemopexin-like 1.				cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	GGGAACCGTTCTTGAGGTCGG	0.617													26	36					0	0	0.000184323	0	0
ABHD15	116236	broad.mit.edu	37	17	27889940	27889940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:27889940G>A	uc002hed.1	-	2	1110	c.1046C>T	c.(1045-1047)GCC>GTC	p.A349V		NM_198147	NP_937790	Q6UXT9	ABH15_HUMAN	abhydrolase domain containing 15 precursor	349						extracellular region	carboxylesterase activity				0						CACAGGCACGGCTGCCTCATC	0.582													37	47					0	0	0.000270559	0	0
Unknown	0	broad.mit.edu	37	17	34236443	34236443	+	RNA	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:34236443C>T	uc010ctx.1	-	1		c.511G>A								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		TGATCCTGACCCGGTGTTGGA	0.488													9	18					0	0	0.000274275	0	0
GSDMA	284110	broad.mit.edu	37	17	38131159	38131159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:38131159G>A	uc002htl.1	+	10	1031	c.913G>A	c.(913-915)GGG>AGG	p.G305R	GSDMA_uc002htm.1_Missense_Mutation_p.G305R	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	305					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						ACAGCTTGAAGGGGCTCTAGA	0.542													15	18					0	0	0.000308642	0	0
WIPF2	147179	broad.mit.edu	37	17	38430092	38430092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:38430092C>T	uc002hug.1	+	6	1261	c.1021C>T	c.(1021-1023)CCT>TCT	p.P341S	WIPF2_uc002huh.1_Missense_Mutation_p.P191S|WIPF2_uc010cww.1_Missense_Mutation_p.P191S|WIPF2_uc002hui.1_Missense_Mutation_p.P341S|WIPF2_uc010cwx.1_Missense_Mutation_p.P83S|WIPF2_uc010cwy.1_Missense_Mutation_p.P341S	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	341	Poly-Pro.					cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						GGATGCTCCCCCTCCCCCACC	0.612										HNSCC(43;0.11)			29	16					0	0	0.000491102	0	0
KRT9	3857	broad.mit.edu	37	17	39723534	39723534	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:39723534G>A	uc002hxe.3	-	7	1929	c.1863C>T	c.(1861-1863)TCC>TCT	p.S621S	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	621	Tail.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				ACTAGGAATGGGATGATTTtc	0.239													42	35					0	0	0.000374591	0	0
COASY	80347	broad.mit.edu	37	17	40716772	40716772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:40716772G>A	uc002hzz.2	+	5	1250	c.1093G>A	c.(1093-1095)GGC>AGC	p.G365S	COASY_uc010cyj.2_Missense_Mutation_p.G394S|COASY_uc002iab.2_Missense_Mutation_p.G70S|COASY_uc002iad.2_Missense_Mutation_p.G365S|COASY_uc002iac.2_Missense_Mutation_p.G365S|COASY_uc002iae.2_Missense_Mutation_p.G160S|MLX_uc002iaf.2_5'Flank|MLX_uc002iag.2_5'Flank|MLX_uc002iah.2_5'Flank	NM_001042529	NP_001035994	Q13057	COASY_HUMAN	coenzyme A synthase isoform a	365	DPCK.|ATP (Potential).				coenzyme A biosynthetic process|pantothenate metabolic process	mitochondrial outer membrane	ATP binding|dephospho-CoA kinase activity|pantetheine-phosphate adenylyltransferase activity				0		all_cancers(22;1.06e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)		TGGGCTGACTGGCATCAGTGG	0.582													63	75					0	0	0.000781405	0	0
PLEKHH3	79990	broad.mit.edu	37	17	40822654	40822654	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:40822654G>A	uc002iau.2	-	10	1958	c.1491C>T	c.(1489-1491)CAC>CAT	p.H497H	PLEKHH3_uc010cyl.1_RNA|PLEKHH3_uc002iat.1_RNA|PLEKHH3_uc002iav.2_RNA|PLEKHH3_uc010cym.1_Intron|PLEKHH3_uc002iaw.2_Silent_p.H494H	NM_024927	NP_079203	Q7Z736	PKHH3_HUMAN	pleckstrin homology domain containing, family H	497	FERM.				signal transduction	cytoskeleton				large_intestine(1)|ovary(1)	2		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.14)		GCAGAGGTCCGTGAAGACGCA	0.637													18	32					0	0	0.000132079	0	0
PSME3	10197	broad.mit.edu	37	17	40990768	40990768	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:40990768C>T	uc002ibr.2	+	7	652	c.426C>T	c.(424-426)CTC>CTT	p.L142L	PSME3_uc002ibp.2_Silent_p.L81L|PSME3_uc002ibq.2_Silent_p.L155L|PSME3_uc002ibs.2_Silent_p.L153L|PSME3_uc010whd.1_Silent_p.L29L	NM_005789	NP_005780	P61289	PSME3_HUMAN	proteasome activator subunit 3 isoform 1	142					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of proteasomal protein catabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome activator complex	endopeptidase activator activity|identical protein binding|MDM2 binding|p53 binding				0		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		GGGTACAGCTCCTGATTCCCA	0.458													61	64					0	0	0.000781405	0	0
SLC4A1	6521	broad.mit.edu	37	17	42333147	42333147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:42333147C>T	uc002igf.3	-	14	1843	c.1694G>A	c.(1693-1695)GGC>GAC	p.G565D		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	565	Involved in anion transport.|Extracellular (Potential).|Membrane (anion exchange).		G -> A (in WU antigen).		bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GGGCAGGGGGCCCTGAGGTTT	0.522													56	63					0	0	0.000781405	0	0
ABCC3	8714	broad.mit.edu	37	17	48733370	48733370	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:48733370G>A	uc002isl.2	+	2	302	c.222_splice	c.e2+1	p.M74_splice	ABCC3_uc002isk.3_Splice_Site_p.M74_splice	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3						bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GCTCAAGATGGTCAGTGGCTC	0.458													28	25					0	0	0.000491102	0	0
ABCC3	8714	broad.mit.edu	37	17	48734505	48734505	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:48734505C>T	uc002isl.2	+	4	527	c.447C>T	c.(445-447)ATC>ATT	p.I149I	ABCC3_uc002isk.3_Silent_p.I149I	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	149	Helical; Name=4; (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	TCTGCGCCATCGTCCCATTCC	0.582													48	47					0	0	0.000781405	0	0
CA10	56934	broad.mit.edu	37	17	50149694	50149694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:50149694C>T	uc002itw.3	-	2	1107	c.121G>A	c.(121-123)GGA>AGA	p.G41R	CA10_uc002itv.3_Missense_Mutation_p.G47R|CA10_uc002itx.3_Missense_Mutation_p.G41R|CA10_uc002ity.3_Missense_Mutation_p.G41R|CA10_uc002itz.2_Missense_Mutation_p.G41R	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	41					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			ACAAAGCTTCCCTGGACCACC	0.348													23	35					0	0	0.00106085	0	0
TEX14	56155	broad.mit.edu	37	17	56676714	56676714	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:56676714C>T	uc010dcz.1	-	14	2128	c.2010G>A	c.(2008-2010)CTG>CTA	p.L670L	TEX14_uc002iwr.1_Silent_p.L664L|TEX14_uc002iws.1_Silent_p.L664L|TEX14_uc010dda.1_Silent_p.L444L	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	670						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCATCTTATCCAGCTCTTCTT	0.473													40	58					0	0	0.000781405	0	0
INTS2	57508	broad.mit.edu	37	17	59988919	59988919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:59988919G>A	uc002izn.2	-	7	1016	c.940C>T	c.(940-942)CGG>TGG	p.R314W	INTS2_uc002izm.2_Missense_Mutation_p.R306W	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	314					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						AACCAAGTCCGGACTTTCGCA	0.393													33	27					0	0	0.000814825	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342475	60342475	+	RNA	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:60342475G>A	uc010woz.1	-	14		c.1654C>T				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						AGCTCTGAAGGGGGTGCCCTG	0.612													21	78					0	0	0.00106085	0	0
APOH	350	broad.mit.edu	37	17	64216794	64216794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:64216794C>T	uc002jfn.3	-	5	541	c.482G>A	c.(481-483)GGA>GAA	p.G161E		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	161	Sushi 3.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			GGAATTGTTTCCAGCTGATGG	0.413													40	75					0	0	0.000781405	0	0
KCNJ16	3773	broad.mit.edu	37	17	68129477	68129477	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:68129477C>T	uc002jin.2	+	5	1735	c.1249C>T	c.(1249-1251)CAA>TAA	p.Q417*	KCNJ16_uc002jio.2_Nonsense_Mutation_p.Q417*|KCNJ16_uc002jip.2_Nonsense_Mutation_p.Q417*|KCNJ16_uc002jiq.2_Nonsense_Mutation_p.Q449*	NM_018658	NP_061128	Q9NPI9	IRK16_HUMAN	potassium inwardly-rectifying channel J16	417	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Breast(10;2.96e-09)					TGTAGAATCCCAAATGTAGTC	0.398													10	16					0	0	0.00010058	0	0
TRIM65	201292	broad.mit.edu	37	17	73887084	73887084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:73887084G>A	uc002jpx.2	-	6	1366	c.1330C>T	c.(1330-1332)CCA>TCA	p.P444S		NM_173547	NP_775818	Q6PJ69	TRI65_HUMAN	tripartite motif-containing 65	444	B30.2/SPRY.					intracellular	zinc ion binding				0			Epithelial(20;7.53e-06)|all cancers(21;9.11e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			GACACCCCTGGGAGGCGCTGG	0.677													3	3					0	0	6.4e-05	0	0
FOXJ1	2302	broad.mit.edu	37	17	74134192	74134192	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:74134192G>C	uc002jqw.2	-	2	598	c.508C>G	c.(508-510)CGC>GGC	p.R170G	FOXJ1_uc002jqx.2_Missense_Mutation_p.R170G|uc002jqy.1_5'Flank	NM_001454	NP_001445	Q92949	FOXJ1_HUMAN	forkhead box J1	170	Fork-head.				actin cytoskeleton organization|activation of Rho GTPase activity|central tolerance induction|cilium assembly|epithelial cell differentiation|establishment of apical/basal cell polarity|heart looping|humoral immune response|left/right pattern formation|leukocyte migration|lung development|negative regulation of B cell activation|negative regulation of germinal center formation|negative regulation of humoral immune response mediated by circulating immunoglobulin|negative regulation of interleukin-6 biosynthetic process|negative regulation of NF-kappaB transcription factor activity|negative regulation of T cell differentiation in thymus|negative regulation of T cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of central B cell tolerance induction|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			pancreas(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			AGGTTGTGGCGGATTGAATTC	0.602													22	35					0	0	0.000878237	0	0
TNRC6C	57690	broad.mit.edu	37	17	76045287	76045287	+	Silent	SNP	G	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:76045287G>T	uc002jud.2	+	4	744	c.144G>T	c.(142-144)GCG>GCT	p.A48A	TNRC6C_uc002juf.2_Silent_p.A48A|TNRC6C_uc002jue.2_Silent_p.A48A	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	48	Sufficient for interaction with argonaute family proteins.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			ATGGAAGTGCGGCCAGAGTGT	0.547													52	70					1.34479e-40	1.30483e-39	0.000781405	1	0
RPTOR	57521	broad.mit.edu	37	17	78820345	78820345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:78820345C>T	uc002jyt.1	+	11	2090	c.1285C>T	c.(1285-1287)CCA>TCA	p.P429S	RPTOR_uc010wuf.1_Missense_Mutation_p.P244S|RPTOR_uc010wug.1_Missense_Mutation_p.P429S	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	429					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						GAACCGAAACCCACCCGAACA	0.622													19	29					0	0	0.000229342	0	0
TGIF1	7050	broad.mit.edu	37	18	3457419	3457419	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:3457419G>A	uc002klz.2	+	3	1074	c.687G>A	c.(685-687)AAG>AAA	p.K229K	TGIF1_uc002klu.2_Silent_p.K80K|TGIF1_uc002klv.2_Silent_p.K114K|TGIF1_uc002klx.2_Silent_p.K80K|TGIF1_uc002klw.2_Silent_p.K100K|TGIF1_uc002kly.2_Silent_p.K100K|TGIF1_uc002kma.2_Silent_p.K80K|TGIF1_uc002kmb.2_Silent_p.K80K|TGIF1_uc002kmc.2_Silent_p.K80K	NM_170695	NP_733796	Q15583	TGIF1_HUMAN	TG-interacting factor isoform a	229					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Esophageal squamous(4;0.0859)	Colorectal(8;0.0104)				TGCTGAGAAAGGATGGCAAAG	0.488													12	22					0	0	0.000151284	0	0
DLGAP1	9229	broad.mit.edu	37	18	3534283	3534283	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:3534283G>A	uc002kmf.2	-	7	2455	c.2388C>T	c.(2386-2388)TTC>TTT	p.F796F	DLGAP1_uc010wyz.1_Silent_p.F796F|DLGAP1_uc002kme.1_Silent_p.F494F|DLGAP1_uc010dkn.2_Silent_p.F504F|DLGAP1_uc010wyw.1_Silent_p.F502F|DLGAP1_uc010wyx.1_Silent_p.F518F|DLGAP1_uc010wyy.1_Silent_p.F480F|DLGAP1_uc002kmg.2_Silent_p.F494F	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	796					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				GAAGCTTCAGGAACCAGTGGC	0.572													13	21					0	0	0.000219431	0	0
IMPA2	3613	broad.mit.edu	37	18	12009942	12009942	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:12009942G>A	uc002kqp.1	+	3	505	c.291G>A	c.(289-291)ACG>ACA	p.T97T	IMPA2_uc002kqo.1_Translation_Start_Site|IMPA2_uc010dlb.1_Silent_p.T81T|IMPA2_uc002kqq.1_Translation_Start_Site	NM_014214	NP_055029	O14732	IMPA2_HUMAN	inositol(myo)-1(or 4)-monophosphatase 2	97					inositol phosphate dephosphorylation|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(2)	2					Lithium(DB01356)	ACAGCCCGACGTGGATCATCG	0.572													36	77					0	0	0.00111076	0	0
MC2R	4158	broad.mit.edu	37	18	13884916	13884916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:13884916C>T	uc002ksp.1	-	2	779	c.602G>A	c.(601-603)CGA>CAA	p.R201Q		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	201	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	GGTGTGGGATCGAGCCAGCAG	0.577													13	29					0	0	0.000422831	0	0
POTEC	388468	broad.mit.edu	37	18	14513675	14513675	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:14513675T>C	uc010dln.2	-	10	1973	c.1519A>G	c.(1519-1521)AAA>GAA	p.K507E	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	507	Potential.									skin(3)	3						GAATTCATTTTCTTTTCAGCC	0.284													3	35					0	0	6.4e-05	0	0
DSC2	1824	broad.mit.edu	37	18	28660275	28660275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:28660275C>T	uc002kwl.3	-	10	1761	c.1307G>A	c.(1306-1308)GGT>GAT	p.G436D	DSC2_uc002kwk.3_Missense_Mutation_p.G436D	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	436	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			ATTAACTACACCAATTTGCAA	0.383													7	12					0	0	0.000274275	0	0
DSC1	1823	broad.mit.edu	37	18	28722027	28722027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:28722027C>T	uc002kwn.2	-	9	1457	c.1195G>A	c.(1195-1197)GAA>AAA	p.E399K	DSC1_uc002kwm.2_Missense_Mutation_p.E399K	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	399	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TTTCCATTTTCATTTCCTTGT	0.353													22	36					0	0	0.00047179	0	0
ZNF397OS	100101467	broad.mit.edu	37	18	32833469	32833469	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:32833469G>C	uc002kym.2	-	4	1658	c.1430C>G	c.(1429-1431)ACA>AGA	p.T477R	ZNF397_uc010dmq.2_Intron|ZNF397_uc010dmr.2_Intron|ZNF397_uc002kyj.2_Intron|ZNF397OS_uc002kyl.2_Missense_Mutation_p.H65D|ZNF397OS_uc010xce.1_Missense_Mutation_p.T477R	NM_001112734	NP_001106205	Q86W11	ZSC30_HUMAN	zinc finger protein 397 opposite strand	477	C2H2-type 7.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ATGCCTAAATGTTTTTCTACA	0.428													10	19					0	0	0.000978159	0	0
RPL17	6139	broad.mit.edu	37	18	47014931	47014931	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:47014931G>A	uc002ldo.2	-	6	782	c.513C>T	c.(511-513)TCC>TCT	p.S171S	C18orf32_uc002ldk.1_5'Flank|C18orf32_uc002ldl.2_5'Flank|C18orf32_uc002ldm.1_Intron|RPL17_uc002ldn.2_Silent_p.S133S|RPL17_uc002ldp.2_Silent_p.S171S|RPL17_uc002ldq.2_Silent_p.S171S|RPL17_uc010xdg.1_Silent_p.S133S	NM_001035006	NP_001030178	P18621	RL17_HUMAN	ribosomal protein L17	171					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0						GTTTCTTCTGGGATATCTGGG	0.348													15	29					0	0	0.000422831	0	0
CXXC1	30827	broad.mit.edu	37	18	47812604	47812604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:47812604G>A	uc002leq.3	-	4	980	c.247C>T	c.(247-249)CGC>TGC	p.R83C	CXXC1_uc002lep.3_5'UTR|CXXC1_uc002ler.3_Missense_Mutation_p.R83C|CXXC1_uc010doy.2_Missense_Mutation_p.R83C|CXXC1_uc002les.2_Missense_Mutation_p.R83C	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	83					histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TGCCGATAGCGAATCTCTAGC	0.577													53	52					0	0	0.000781405	0	0
CPLX4	339302	broad.mit.edu	37	18	56963965	56963965	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:56963965T>G	uc002lhy.2	-	3	635	c.448A>C	c.(448-450)AAG>CAG	p.K150Q		NM_181654	NP_857637	Q7Z7G2	CPLX4_HUMAN	complexin 4 precursor	150					exocytosis|neurotransmitter transport	cell junction|synapse	syntaxin binding			ovary(1)	1		Colorectal(73;0.175)				GCTGTCTGCTTGATTTCAGTG	0.498													5	13					0	0	0.000602214	0	0
CDH7	1005	broad.mit.edu	37	18	63477014	63477014	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:63477014C>T	uc002ljz.2	+	3	610	c.285C>T	c.(283-285)TTC>TTT	p.F95F	CDH7_uc002lka.2_Silent_p.F95F|CDH7_uc002lkb.2_Silent_p.F95F	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	95	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				GTTCCATTTTCATTATTGATG	0.468													8	6					0	0	0.000157383	0	0
CTDP1	9150	broad.mit.edu	37	18	77478004	77478004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr18:77478004C>T	uc002lnh.1	+	10	2552	c.2405C>T	c.(2404-2406)CCC>CTC	p.P802L	CTDP1_uc002lni.1_Missense_Mutation_p.P802L|CTDP1_uc010drd.1_Missense_Mutation_p.P802L	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	802					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		CGCCAGGAGCCCTCTTCCTTC	0.657													9	20					0	0	0.000274275	0	0
MED16	10025	broad.mit.edu	37	19	872062	872062	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:872062C>A	uc002lqd.1	-	12	2113	c.1962G>T	c.(1960-1962)ATG>ATT	p.M654I	MED16_uc010drw.1_Intron|MED16_uc002lqe.2_Missense_Mutation_p.M643I|MED16_uc002lqf.2_Missense_Mutation_p.M643I	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	654	WD 4.				androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATTCCCGAAGCATGCCCAGCG	0.667													11	16					0.000978159	0.00927787	0.000978159	1	0
CELF5	60680	broad.mit.edu	37	19	3275854	3275854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:3275854G>A	uc002lxm.2	+	4	432	c.395G>A	c.(394-396)AGG>AAG	p.R132K	CELF5_uc002lxl.1_Missense_Mutation_p.R132K|CELF5_uc010dtj.1_Missense_Mutation_p.R132K|CELF5_uc010xhg.1_Missense_Mutation_p.R18K|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	132					mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						CCGCCCACAGGGGACCGGAAG	0.682													23	11					0	0	0.000878237	0	0
SAFB	6294	broad.mit.edu	37	19	5667165	5667165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:5667165C>T	uc002mcf.2	+	18	2496	c.2443C>T	c.(2443-2445)CCT>TCT	p.P815S	SAFB_uc002mcg.2_Missense_Mutation_p.P815S|SAFB_uc002mce.3_Missense_Mutation_p.P814S|SAFB_uc010xir.1_Missense_Mutation_p.P814S|SAFB_uc010xis.1_Missense_Mutation_p.P746S|SAFB_uc010xit.1_Missense_Mutation_p.P657S|SAFB_uc010xiu.1_Missense_Mutation_p.P614S	NM_002967	NP_002958	Q15424	SAFB1_HUMAN	scaffold attachment factor B	815	Interaction with SAFB2.|Arg-rich.|Gly-rich.				chromatin organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding			ovary(1)|liver(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;0.000222)		GGGGCTGCCTCCTCCCCCCAG	0.697													5	3					0	0	0.000602214	0	0
C3	718	broad.mit.edu	37	19	6719409	6719409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:6719409G>A	uc002mfm.2	-	2	142	c.80C>T	c.(79-81)TCT>TTT	p.S27F		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	27					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GGTGATGATAGAGTACCTGTC	0.617													10	24					0	0	0.000978159	0	0
PNPLA6	10908	broad.mit.edu	37	19	7606272	7606272	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:7606272C>T	uc010xjq.1	+	10	1179	c.984C>T	c.(982-984)TTC>TTT	p.F328F	PNPLA6_uc002mgq.1_Silent_p.F280F|PNPLA6_uc010xjp.1_Silent_p.F280F|PNPLA6_uc002mgr.1_Silent_p.F280F|PNPLA6_uc002mgs.2_Silent_p.F319F	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	319	Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						GAGTCACCTTCCTGGCACTGC	0.662													12	15					0	0	0.00010058	0	0
MUC16	94025	broad.mit.edu	37	19	9085008	9085008	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:9085008C>T	uc002mkp.2	-	1	7011	c.6807G>A	c.(6805-6807)AAG>AAA	p.K2269K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2269	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATGAGTTGTCTTTTCTGGGA	0.433													10	8					0	0	0.000673444	0	0
OR7G2	390882	broad.mit.edu	37	19	9213650	9213650	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:9213650C>T	uc010xkk.1	-	1	333	c.333G>A	c.(331-333)CGG>CGA	p.R111R		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACGTGATGCTCCGATTCTGAG	0.478													39	41					0	0	0.000680045	0	0
ZNF317	57693	broad.mit.edu	37	19	9271318	9271319	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:9271318_9271319CC>TT	uc002mku.2	+	7	1272_1273	c.997_998CC>TT	c.(997-999)CCC>TTC	p.P333F	ZNF317_uc002mkv.2_Missense_Mutation_p.P192F|ZNF317_uc002mkw.2_Missense_Mutation_p.P301F|ZNF317_uc002mkx.2_Missense_Mutation_p.P248F|ZNF317_uc002mky.2_Missense_Mutation_p.P216F	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	333					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGGAGAGAGGCCCTACGAGTGT	0.604													10	31					0	0	6.4e-05	0	0
COL5A3	50509	broad.mit.edu	37	19	10090695	10090695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:10090695C>T	uc002mmq.1	-	36	2719	c.2633G>A	c.(2632-2634)GGA>GAA	p.G878E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	878	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCCAGGGAATCCTGGAGGGCC	0.607													10	10					0	0	0.000442599	0	0
CCDC105	126402	broad.mit.edu	37	19	15132169	15132169	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:15132169C>T	uc002nae.2	+	4	978	c.879C>T	c.(877-879)TGC>TGT	p.C293C		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	293					microtubule cytoskeleton organization	microtubule				ovary(1)	1						TTGCAGCGTGCGCCTTGGCGC	0.617													9	19					0	0	0.000978159	0	0
CYP4F3	4051	broad.mit.edu	37	19	15756619	15756619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:15756619G>A	uc002nbj.2	+	3	339	c.289G>A	c.(289-291)GCA>ACA	p.A97T	CYP4F3_uc010xok.1_Intron|CYP4F3_uc010xol.1_Intron|CYP4F3_uc010xom.1_Intron|CYP4F3_uc002nbk.2_Intron	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	97					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						GCCCTGGCACGCAATCGTCCG	0.577													13	29					0	0	0.000151284	0	0
SIN3B	23309	broad.mit.edu	37	19	16942413	16942413	+	Silent	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:16942413T>C	uc002ney.1	+	3	350	c.336T>C	c.(334-336)ATT>ATC	p.I112I	SIN3B_uc002new.2_Silent_p.I112I|SIN3B_uc002nex.2_Silent_p.I44I|SIN3B_uc002nez.1_Silent_p.I112I	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	112					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						GAATAGACATTCCCAAGAATG	0.498													42	75					0	0	0.000374591	0	0
MYO9B	4650	broad.mit.edu	37	19	17212878	17212878	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:17212878C>T	uc010eak.2	+	2	503	c.351C>T	c.(349-351)ACC>ACT	p.T117T	MYO9B_uc002nfi.2_Silent_p.T117T|MYO9B_uc002nfj.1_Silent_p.T117T	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	117	Myosin head-like.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						CAGATGGAACCATCAAGTACG	0.652													13	13					0	0	0.00010058	0	0
FAM129C	199786	broad.mit.edu	37	19	17660308	17660308	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:17660308G>A	uc010xpr.1	+	15	1953	c.1815G>A	c.(1813-1815)TTG>TTA	p.L605L	FAM129C_uc010xpq.1_Silent_p.L605L|FAM129C_uc002ngy.3_Silent_p.L331L|FAM129C_uc010xpu.1_Intron|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Silent_p.L295L	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	605											0						ACGGCTGCTTGGAGGTCCCAT	0.562													53	51					0	0	0.000781405	0	0
SLC5A5	6528	broad.mit.edu	37	19	17994489	17994490	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:17994489_17994490GG>AA	uc002nhr.3	+	11	1590	c.1243_splice	c.e11-1	p.G415_splice		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide						cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TACTCTCCCAGGGCTCCTTCAC	0.609													35	25					0	0	6.4e-05	0	0
KIAA1683	80726	broad.mit.edu	37	19	18377203	18377203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:18377203G>A	uc002nin.2	-	3	1363	c.1147C>T	c.(1147-1149)CCG>TCG	p.P383S	KIAA1683_uc010ebn.2_Missense_Mutation_p.P383S|KIAA1683_uc010xqe.1_Missense_Mutation_p.P337S	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	383	Thr-rich.					mitochondrion				ovary(2)	2						GTGGGCCCCGGATACATCTGG	0.572													53	42					0	0	0.000781405	0	0
LSM4	25804	broad.mit.edu	37	19	18418351	18418351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:18418351G>A	uc002niq.2	-	5	514	c.343C>T	c.(343-345)CGG>TGG	p.R115W		NM_012321	NP_036453	Q9Y4Z0	LSM4_HUMAN	U6 snRNA-associated Sm-like protein 4	115					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|mRNA processing|RNA splicing	cytosol|U6 snRNP	protein binding|RNA binding				0						CCTCGGCCCCGGCCACCAAAC	0.627													4	1					0	0	0.000602214	0	0
NCAN	1463	broad.mit.edu	37	19	19339337	19339337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:19339337G>A	uc002nlz.2	+	8	3007	c.2908G>A	c.(2908-2910)GAA>AAA	p.E970K	NCAN_uc010ecc.1_Missense_Mutation_p.E534K	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	970					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			AGAGGACTTCGAACTGGAGGT	0.642													56	39					0	0	0.000781405	0	0
ZNF208	7757	broad.mit.edu	37	19	22157023	22157023	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:22157023G>A	uc002nqp.2	-	4	962	c.813C>T	c.(811-813)ATC>ATT	p.I271I	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GTTTAGTAAGGATTGCAGATT	0.358													7	11					0	0	8.12818e-05	0	0
ETV2	2116	broad.mit.edu	37	19	36133948	36133948	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:36133948G>A	uc002oas.2	+	3	758	c.319_splice	c.e3+1	p.E107_splice	ETV2_uc002oar.2_Splice_Site_p.E79_splice|ETV2_uc002oat.2_Splice_Site|ETV2_uc002oau.2_Intron	NM_014209	NP_055024	O00321	ETV2_HUMAN	ets variant gene 2								sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGGGGGGCGGGTGAGTGTGGG	0.627													5	0					0	0	8.12818e-05	0	0
TMEM149	79713	broad.mit.edu	37	19	36231322	36231322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:36231322G>A	uc002obc.2	-	3	402	c.301C>T	c.(301-303)CCC>TCC	p.P101S	TMEM149_uc002obb.2_Intron|TMEM149_uc002obd.3_Missense_Mutation_p.P101S|TMEM149_uc010xsy.1_RNA|TMEM149_uc010eej.2_Missense_Mutation_p.P181S	NM_024660	NP_078936	Q9H665	IGFR1_HUMAN	transmembrane protein 149 precursor	101	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCCGCGGCGGGAGTAGGGGTC	0.692													14	0					0	0	0.00074312	0	0
C19orf55	148137	broad.mit.edu	37	19	36250881	36250881	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:36250881C>T	uc002obq.1	+	3	373	c.300C>T	c.(298-300)TCC>TCT	p.S100S	HSPB6_uc002obn.1_5'Flank|C19orf55_uc002obp.2_Silent_p.S100S|C19orf55_uc002obo.1_Silent_p.S100S	NM_001039887	NP_001034976	Q2NL68	CS055_HUMAN	hypothetical protein LOC148137	100										ovary(1)	1	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCGGGGACTCCGTGGTGGCCA	0.597													7	0					0	0	0.000157383	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580950	40580950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:40580950G>A	uc002omy.2	-	6	1624	c.1399C>T	c.(1399-1401)CAT>TAT	p.H467Y	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.H467Y|ZNF780A_uc010xvh.1_Missense_Mutation_p.H468Y	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	467	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TCACCAGTATGAATTCGAGAA	0.413													37	4					0	0	0.000814825	0	0
CYP2A7	1549	broad.mit.edu	37	19	41383128	41383128	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:41383128C>T	uc002opm.2	-	7	1670	c.1128G>A	c.(1126-1128)AAG>AAA	p.K376K	CYP2A7_uc002opo.2_Silent_p.K376K|CYP2A7_uc002opn.2_Silent_p.K325K	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	376						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			ACTTGGTGTCCTTTTTAACCC	0.542													48	1					0	0	0.000781405	0	0
GRIK5	2901	broad.mit.edu	37	19	42566912	42566912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:42566912C>T	uc002osj.1	-	3	375	c.340G>A	c.(340-342)GAG>AAG	p.E114K	GRIK5_uc010eib.1_Missense_Mutation_p.E33K	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	114	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	CATCTCACCTCCTTCTCTCCA	0.617													30	1					0	0	0.000227799	0	0
LIPE	3991	broad.mit.edu	37	19	42930619	42930619	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:42930619C>T	uc002otr.2	-	1	960	c.683G>A	c.(682-684)TGG>TAG	p.W228*	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|LIPE_uc002ots.1_5'Flank	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	228					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				ATCTGTGACCCACTCAGAAAG	0.493													75	2					0	0	0.000781405	0	0
CEACAM19	56971	broad.mit.edu	37	19	45175912	45175912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:45175912C>T	uc002ozo.3	+	2	580	c.100C>T	c.(100-102)CTC>TTC	p.L34F	CEACAM19_uc002ozp.3_Missense_Mutation_p.L34F	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	34	Extracellular (Potential).					integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				CCAGGCAGCTCTCTACATCCA	0.562													65	6					0	0	0.000781405	0	0
KLK4	9622	broad.mit.edu	37	19	51412004	51412004	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:51412004G>A	uc002pua.1	-	3	306	c.306C>T	c.(304-306)TCC>TCT	p.S102S	KLK4_uc002pty.1_Silent_p.S53S|KLK4_uc002ptz.1_RNA|KLK4_uc002pub.1_Silent_p.S7S|KLK4_uc002puc.1_RNA|KLK4_uc010eoi.1_Silent_p.S7S|KLK4_uc002pud.1_Silent_p.S7S	NM_004917	NP_004908	Q9Y5K2	KLK4_HUMAN	kallikrein-related peptidase 4 preproprotein	102	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00624)|GBM - Glioblastoma multiforme(134;0.00878)		GGTGCCGTACGGAGAGGCTGG	0.612													31	2					0	0	0.000319135	0	0
ZNF766	90321	broad.mit.edu	37	19	52793753	52793753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:52793753C>T	uc002pyr.1	+	4	752	c.709C>T	c.(709-711)CGT>TGT	p.R237C	ZNF766_uc002pys.1_3'UTR|ZNF766_uc002pyt.1_Missense_Mutation_p.R252C	NM_001010851	NP_001010851	Q5HY98	ZN766_HUMAN	zinc finger protein 766	237	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00236)|OV - Ovarian serous cystadenocarcinoma(262;0.00871)		TTGGAGAATTCGTACAGGAGA	0.438													28	1					0	0	0.00106085	0	0
ZNF702P	79986	broad.mit.edu	37	19	53472914	53472914	+	RNA	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:53472914A>G	uc002qan.3	-	4		c.1587T>C				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						TTTGATTTTCAATTAAAAACC	0.338													3	6					0	0	0.00024832	0	0
LILRA4	23547	broad.mit.edu	37	19	54849894	54849894	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:54849894T>C	uc002qfj.2	-	3	185	c.128A>G	c.(127-129)AAC>AGC	p.N43S	LILRA4_uc002qfi.2_5'UTR	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	43	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		GGTCACGGGGTTATGCCAGGT	0.542											OREG0003656	type=REGULATORY REGION|Gene=LILRA4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	44	2					0	0	0.000781405	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55286808	55286808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:55286808G>A	uc002qhb.1	+	4	600	c.562G>A	c.(562-564)GGC>AGC	p.G188S	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.G188S	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	188	Extracellular (Potential).|Ig-like C2-type 2.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CTTTCCTCTGGGCCCTGCCAC	0.557													65	3					0	0	0.000781405	0	0
ZNF274	10782	broad.mit.edu	37	19	58718355	58718355	+	Silent	SNP	C	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr19:58718355C>A	uc002qrq.1	+	5	984	c.525C>A	c.(523-525)CCC>CCA	p.P175P	ZNF274_uc010yhu.1_RNA|ZNF274_uc010yhv.1_RNA|ZNF274_uc002qrr.1_Silent_p.P143P|ZNF274_uc002qrs.1_Silent_p.P70P|ZNF274_uc010eum.1_5'UTR	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	175	SCAN box.				viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		TGACAGGTCCCCGGGAGCCCT	0.632													7	1					5.18039e-06	4.95067e-05	0.000157383	1	0
NTSR2	23620	broad.mit.edu	37	2	11802193	11802193	+	Silent	SNP	G	A	A	rs17853769		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:11802193G>A	uc002rbq.3	-	2	872	c.798C>T	c.(796-798)ATC>ATT	p.I266I		NM_012344	NP_036476	O95665	NTR2_HUMAN	neurotensin receptor 2	266	Cytoplasmic (Potential).				sensory perception	integral to plasma membrane					0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.129)|OV - Ovarian serous cystadenocarcinoma(76;0.24)	Levocabastine(DB01106)	TCTTCCATACGATGAAGCTGA	0.627													61	8					0	0	0.000781405	0	0
TRIB2	28951	broad.mit.edu	37	2	12858523	12858523	+	Silent	SNP	A	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:12858523A>T	uc002rbv.3	+	1	1526	c.90A>T	c.(88-90)ATA>ATT	p.I30I	TRIB2_uc010yjp.1_Intron	NM_021643	NP_067675	Q92519	TRIB2_HUMAN	tribbles homolog 2	30					negative regulation of fat cell differentiation|negative regulation of interleukin-10 biosynthetic process|negative regulation of protein kinase activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|regulation of MAP kinase activity	cytoplasm|cytoskeleton|nucleus	ATP binding|protein kinase activity|protein kinase inhibitor activity|transcription factor binding|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			stomach(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TGTCGTCTATAAGGTCCGCGG	0.542											OREG0014450	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	7					0	0	0.000953801	0	0
NT5C1B	93034	broad.mit.edu	37	2	18764168	18764168	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:18764168C>T	uc002rcz.2	-	7	1271	c.1167G>A	c.(1165-1167)GTG>GTA	p.V389V	NT5C1B_uc002rcy.2_Silent_p.V389V|NT5C1B_uc010exr.2_Silent_p.V331V|NT5C1B_uc010yju.1_Silent_p.V329V|NT5C1B_uc002rda.2_Silent_p.V329V|NT5C1B_uc010yjv.1_Silent_p.V406V|NT5C1B_uc010yjw.1_Silent_p.V372V|NT5C1B_uc010exs.2_Silent_p.V391V	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	389					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GCCGCACTCCCACTTGGGCAT	0.418													39	10					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21260127	21260127	+	Missense_Mutation	SNP	C	T	T	rs143959032	byFrequency	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:21260127C>T	uc002red.2	-	6	666	c.538G>A	c.(538-540)GAT>AAT	p.D180N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	180	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TACACGGTATCCTATGGAGGA	0.498													122	17					0	0	0.000781405	0	0
PLB1	151056	broad.mit.edu	37	2	28800973	28800973	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:28800973G>A	uc002rmb.1	+	22	1434	c.1434_splice	c.e22-1	p.E478_splice	PLB1_uc010ezj.1_Splice_Site_p.E489_splice|PLB1_uc002rmc.2_Splice_Site_p.E166_splice|PLB1_uc002rmd.1_Splice_Site	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor						lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TGTTTCCACAGGGATCTACCT	0.562													20	3					0	0	0.000586117	0	0
ERLEC1	27248	broad.mit.edu	37	2	54014422	54014423	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:54014422_54014423GG>AA	uc002rxl.2	+	1	355_356	c.75_76GG>AA	c.(73-78)CTGGAG>CTAAAG	p.E26K	ASB3_uc002rxg.1_5'Flank|ASB3_uc002rxh.1_5'Flank|ASB3_uc002rxi.3_Intron|ASB3_uc010yoo.1_5'Flank|ERLEC1_uc002rxm.2_Missense_Mutation_p.E26K|ERLEC1_uc002rxn.2_Missense_Mutation_p.E26K	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	26					ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						GCGGCCTCCTGGAGGCGTCCGG	0.683													18	3					0	0	6.4e-05	0	0
SPR	6697	broad.mit.edu	37	2	73115593	73115593	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:73115593T>C	uc002sik.2	+	2	505	c.455T>C	c.(454-456)GTG>GCG	p.V152A		NM_003124	NP_003115	P35270	SPRE_HUMAN	sepiapterin reductase	152					nitric oxide biosynthetic process|tetrahydrobiopterin biosynthetic process	cytoplasm	aldo-keto reductase (NADP) activity|NADP binding|sepiapterin reductase activity			ovary(2)	2						AACAGAACCGTGGTTAACATC	0.567											OREG0014704	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	43					0	0	0.00024832	0	0
SMYD1	150572	broad.mit.edu	37	2	88387408	88387408	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:88387408G>A	uc002ssr.2	+	3	344	c.342G>A	c.(340-342)GTG>GTA	p.V114V	SMYD1_uc002ssq.1_Intron	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	114					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TGTGGCGGGTGGAGAGAGAAG	0.547													4	1					0	0	0.00024832	0	0
FER1L5	90342	broad.mit.edu	37	2	97370339	97370339	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:97370339G>A	uc010fia.2	+	52	6192	c.6192G>A	c.(6190-6192)AAG>AAA	p.K2064K	FER1L5_uc002sws.3_Silent_p.K773K|FER1L5_uc002swt.3_Silent_p.K773K|FER1L5_uc010yus.1_Silent_p.K772K	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	2064						integral to membrane				ovary(1)	1						CAAACCTAAAGCCTACAATAG	0.453													117	11					0	0	0.000781405	0	0
IL1F6	27179	broad.mit.edu	37	2	113763661	113763661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:113763661C>T	uc010yxr.1	+	2	121	c.121C>T	c.(121-123)CCA>TCA	p.P41S		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	41					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						CCGTATGTCTCCAGGTGAGTA	0.542													21	1					0	0	0.000175454	0	0
LCT	3938	broad.mit.edu	37	2	136570041	136570041	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:136570041C>T	uc002tuu.1	-	7	2204	c.2193G>A	c.(2191-2193)GGG>GGA	p.G731G		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	731	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GCCTCCTTATCCCCCAGGGCA	0.512													68	7					0	0	0.000781405	0	0
LY75	4065	broad.mit.edu	37	2	160672014	160672014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:160672014G>A	uc002ubc.3	-	31	4520	c.4451C>T	c.(4450-4452)TCT>TTT	p.S1484F	LY75_uc002ubb.3_Missense_Mutation_p.S1484F|LY75_uc010fos.2_Missense_Mutation_p.S1484F	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1484	Extracellular (Potential).|C-type lectin 9.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		ATTTCCAGGAGATGTTTGGCC	0.363													71	4					0	0	0.000781405	0	0
XIRP2	129446	broad.mit.edu	37	2	168106203	168106203	+	Silent	SNP	T	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:168106203T>A	uc002udx.2	+	8	8319	c.8301T>A	c.(8299-8301)GCT>GCA	p.A2767A	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.A2592A|XIRP2_uc010fpq.2_Silent_p.A2545A|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Silent_p.A113A	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2592					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AATCTCTGGCTGAAAGACATT	0.373													15	1					0	0	0.000308642	0	0
TTN	7273	broad.mit.edu	37	2	179593492	179593492	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:179593492G>A	uc010zfg.1	-	63	15653	c.15429C>T	c.(15427-15429)ATC>ATT	p.I5143I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I1804I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6070							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTCTCTACGATTTGAGCTG	0.383													16	3					0	0	0.000132079	0	0
CCDC150	284992	broad.mit.edu	37	2	197540896	197540896	+	Silent	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:197540896T>C	uc002utp.1	+	11	1302	c.1167T>C	c.(1165-1167)TTT>TTC	p.F389F	CCDC150_uc010zgq.1_RNA|CCDC150_uc010zgr.1_RNA|CCDC150_uc010zgs.1_Silent_p.F57F	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	389											0						CGCAGACATTTCAAGAACAAA	0.403													47	10					0	0	0.000781405	0	0
AOX1	316	broad.mit.edu	37	2	201464354	201464354	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:201464354C>T	uc002uvx.2	+	5	422	c.321C>T	c.(319-321)GCC>GCT	p.A107A		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	107					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	AGAGGATTGCCAAGTGTCATG	0.348													41	5					0	0	0.000437636	0	0
ICA1L	130026	broad.mit.edu	37	2	203684471	203684472	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:203684471_203684472GG>TT	uc002uzh.1	-	6	674_675	c.510_511CC>AA	c.(508-513)TCCCAA>TCAAAA	p.Q171K	ICA1L_uc002uzi.1_Missense_Mutation_p.Q171K|ICA1L_uc002uzj.2_Missense_Mutation_p.Q171K	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	171	AH.										0						TCCAGCTCTTGGGATACATCTT	0.416													15	596					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	204075726	204075727	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:204075726_204075727GG>TT	uc002uzt.3	+	53	8077_8078	c.7744_7745GG>TT	c.(7744-7746)GGG>TTG	p.G2582L	NBEAL1_uc002uzs.3_Missense_Mutation_p.G1223L|NBEAL1_uc002uzu.2_Missense_Mutation_p.G77L	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2582							binding			ovary(1)|skin(1)	2						CAAGTATCTAGGGTCTCAAATC	0.327													12	542					0	0	6.4e-05	0	0
SPAG16	79582	broad.mit.edu	37	2	214174822	214174822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:214174822G>A	uc002veq.2	+	4	411	c.319G>A	c.(319-321)GAA>AAA	p.E107K	SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Missense_Mutation_p.E53K|SPAG16_uc010zjk.1_Intron|SPAG16_uc002veo.2_Missense_Mutation_p.E107K|SPAG16_uc002vep.1_Intron|SPAG16_uc002ves.1_Missense_Mutation_p.E76K	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	107					cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TGCAGTACCTGAAGTAATAGA	0.318													7	0					0	0	0.000157383	0	0
DOCK10	55619	broad.mit.edu	37	2	225638013	225638013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr2:225638013G>A	uc010fwz.1	-	53	6304	c.6065C>T	c.(6064-6066)TCG>TTG	p.S2022L	DOCK10_uc002vob.2_Missense_Mutation_p.S2016L|DOCK10_uc002voa.2_Missense_Mutation_p.S678L	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	2022	DHR-2.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TTCTGTGCTCGATTGGCTAAT	0.423													53	6					0	0	0.000781405	0	0
SNRPB	6628	broad.mit.edu	37	20	2444485	2444485	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:2444485C>G	uc002wfz.1	-	4	491	c.328G>C	c.(328-330)GCT>CCT	p.A110P	SNRPB_uc002wga.1_Missense_Mutation_p.A110P|SNRPB_uc010zpv.1_Missense_Mutation_p.A31P|SNRPB_uc002wgb.2_Missense_Mutation_p.A110P|SNORD119_uc010gam.1_5'Flank	NM_198216	NP_937859	P14678	RSMB_HUMAN	small nuclear ribonucleoprotein polypeptide B/B'	110					histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|protein binding|RNA binding			ovary(1)	1						CCTCTGCCAGCAGCCCTGCCG	0.607													45	64					0	0	0.000374591	0	0
TMC2	117532	broad.mit.edu	37	20	2604977	2604977	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:2604977C>T	uc002wgf.1	+	17	2256	c.2241C>T	c.(2239-2241)TTC>TTT	p.F747F	TMC2_uc002wgg.1_Silent_p.F731F	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	747	Extracellular (Potential).					integral to membrane				ovary(3)	3						TCCCAACCTTCCTGGGCAAGA	0.498													41	38					0	0	0.000680045	0	0
PAK7	57144	broad.mit.edu	37	20	9561263	9561263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:9561263C>T	uc002wnl.2	-	5	1064	c.519G>A	c.(517-519)ATG>ATA	p.M173I	PAK7_uc002wnk.2_Missense_Mutation_p.M173I|PAK7_uc002wnj.2_Missense_Mutation_p.M173I|PAK7_uc010gby.1_Missense_Mutation_p.M173I	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	173	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GCTTCATTTTCATTACGTGCC	0.463													39	44					0	0	0.000509022	0	0
MKKS	8195	broad.mit.edu	37	20	10393935	10393935	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:10393935G>A	uc002wnt.1	-	3	1115	c.228C>T	c.(226-228)ATC>ATT	p.I76I	MKKS_uc002wnu.1_Silent_p.I76I|MKKS_uc010zrd.1_Intron	NM_018848	NP_061336	Q9NPJ1	MKKS_HUMAN	McKusick-Kaufman syndrome protein	76					brain morphogenesis|cerebral cortex development|convergent extension involved in gastrulation|detection of mechanical stimulus involved in sensory perception of sound|fat cell differentiation|flagellum assembly|gonad development|heart looping|hippocampus development|intracellular transport|melanosome transport|photoreceptor cell maintenance|pigment granule aggregation in cell center|protein folding|regulation of cilium beat frequency involved in ciliary motility|sensory perception of smell|social behavior|spermatid development|striatum development	cytosol|microtubule organizing center|motile cilium	ATP binding|unfolded protein binding				0						AGGCTGTCAGGATCTTTAAAA	0.443									Bardet-Biedl_syndrome				21	21					0	0	0.000295444	0	0
PCSK2	5126	broad.mit.edu	37	20	17339059	17339059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:17339059C>T	uc002wpm.2	+	3	690	c.370C>T	c.(370-372)CCT>TCT	p.P124S	PCSK2_uc002wpl.2_Missense_Mutation_p.P105S|PCSK2_uc010zrm.1_Missense_Mutation_p.P89S	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	124	Catalytic.				enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CATGAACGATCCTCTTTTTAC	0.408													10	11					0	0	0.000673444	0	0
DUSP15	128853	broad.mit.edu	37	20	30436629	30436629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:30436629C>T	uc002wwu.1	-	9	783	c.706G>A	c.(706-708)GAG>AAG	p.E236K				Q9H1R2	DUS15_HUMAN	RecName: Full=Dual specificity protein phosphatase 15;          EC=3.1.3.48;          EC=3.1.3.16; AltName: Full=Vaccinia virus VH1-related dual-specific protein phosphatase Y; AltName: Full=VH1-related member Y;	236						cytoplasm|plasma membrane	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			ATGAGCTGCTCCTTGGGGTGC	0.607													20	15					0	0	0.000586117	0	0
HCK	3055	broad.mit.edu	37	20	30686916	30686916	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:30686916C>T	uc002wxh.2	+	12	1527	c.1356C>T	c.(1354-1356)ACC>ACT	p.T452T	HCK_uc010gdy.2_Silent_p.T431T|HCK_uc002wxi.2_Silent_p.T430T	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	452	Protein kinase.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			AGATCGTCACCTACGGCCGGA	0.493													71	80					0	0	0.000781405	0	0
C20orf185	359710	broad.mit.edu	37	20	31656669	31656669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:31656669C>T	uc002wym.1	+	10	1039	c.1039C>T	c.(1039-1041)CCC>TCC	p.P347S		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	347					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						GAGGGAAGCTCCCACGGTCAC	0.577													24	19					0	0	0.000586117	0	0
EIF6	3692	broad.mit.edu	37	20	33872062	33872062	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:33872062A>G	uc002xbv.1	-	2	326	c.110T>C	c.(109-111)GTG>GCG	p.V37A	EIF6_uc002xbx.1_Missense_Mutation_p.V37A|EIF6_uc002xbz.1_Missense_Mutation_p.C77R|EIF6_uc002xby.1_RNA	NM_181468	NP_852133	P56537	IF6_HUMAN	eukaryotic translation initiation factor 6	37					mature ribosome assembly	cytoplasm|nucleolus	protein binding|ribosome binding|translation initiation factor activity			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GCCCTCGAACACACTGTAGGG	0.672													17	63					0	0	0.000132079	0	0
GDF5	8200	broad.mit.edu	37	20	34025487	34025487	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:34025487G>A	uc002xck.1	-	1	541	c.222C>T	c.(220-222)GCC>GCT	p.A74A	GDF5_uc010gfc.1_Silent_p.A74A|GDF5_uc010zvc.1_Silent_p.A74A	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	74					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CCTTTGCCCTGGCATTGGCAT	0.657													16	13					0	0	0.000422831	0	0
BPI	671	broad.mit.edu	37	20	36937392	36937392	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:36937392C>T	uc002xib.2	+	3	380	c.318C>T	c.(316-318)GGC>GGT	p.G106G		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	106					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				CCAATGTGGGCCTTAAGTTCT	0.453													50	55					0	0	0.000781405	0	0
LBP	3929	broad.mit.edu	37	20	36993260	36993260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:36993260C>T	uc002xic.1	+	8	810	c.775C>T	c.(775-777)CCA>TCA	p.P259S		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	259					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				CCACCGTTCTCCAGTTACCCT	0.502													78	79					0	0	0.000781405	0	0
EMILIN3	90187	broad.mit.edu	37	20	39992396	39992396	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:39992396G>A	uc002xjy.1	-	3	620	c.396C>T	c.(394-396)CAC>CAT	p.H132H		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	132						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GGTCCGTGAGGTGCTCAGGGC	0.622													34	55					0	0	0.000270559	0	0
PTPRT	11122	broad.mit.edu	37	20	41101054	41101054	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:41101054C>T	uc002xkg.2	-	8	1486	c.1302G>A	c.(1300-1302)CAG>CAA	p.Q434Q	PTPRT_uc010ggj.2_Silent_p.Q434Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	434	Extracellular (Potential).|Fibronectin type-III 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CGGCCTCGTACTGCTGCTGGT	0.627													26	43					0	0	0.000184323	0	0
SLC12A5	57468	broad.mit.edu	37	20	44676643	44676643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:44676643G>A	uc010zxl.1	+	16	2076	c.2000G>A	c.(1999-2001)GGG>GAG	p.G667E	SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.G644E	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	667					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TGGGGCGATGGGATACGAGGT	0.612													11	13					0	0	0.00010058	0	0
KCNB1	3745	broad.mit.edu	37	20	47989650	47989650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:47989650G>A	uc002xur.1	-	2	2611	c.2447C>T	c.(2446-2448)TCC>TTC	p.S816F	KCNB1_uc002xus.1_Missense_Mutation_p.S816F	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	816	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TGCTTCTGTGGAGTAAATACA	0.517													50	101					0	0	0.000781405	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871101	51871101	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr20:51871101C>T	uc002xwo.2	+	2	2060	c.1104C>T	c.(1102-1104)TAC>TAT	p.Y368Y		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	368					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GAGCCAGCTACACCTGGCAGT	0.507													37	102					0	0	0.000228196	0	0
TPTE	7179	broad.mit.edu	37	21	10996106	10996106	+	RNA	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr21:10996106C>T	uc002yis.1	-	12		c.2080G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTGCCCAGTTCGACTTCTTTG	0.413													17	46					0	0	0.000295444	0	0
BACH1	571	broad.mit.edu	37	21	30715024	30715024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr21:30715024G>A	uc002ynj.2	+	5	2196	c.2081G>A	c.(2080-2082)CGA>CAA	p.R694Q	BACH1_uc002ynk.2_Missense_Mutation_p.R694Q|BACH1_uc002ynl.2_Intron	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	694						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						GGCTACGCGCGAGGGCAGGAG	0.577													33	19					0	0	0.000491102	0	0
RUNX1	861	broad.mit.edu	37	21	36206830	36206830	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr21:36206830G>A	uc002yuh.2	-	4	2179	c.601C>T	c.(601-603)CTG>TTG	p.L201L	RUNX1_uc002yui.2_Intron|RUNX1_uc010gmu.2_Silent_p.L228L|RUNX1_uc010gmv.2_Silent_p.L228L|RUNX1_uc002yuj.3_Silent_p.L96L|RUNX1_uc002yuk.3_Silent_p.L228L|RUNX1_uc002yul.1_5'UTR|RUNX1_uc002yum.1_Intron|RUNX1_uc010gmw.1_Silent_p.L228L|RUNX1_uc002yuo.1_Silent_p.L201L	NM_001001890	NP_001001890	Q01196	RUNX1_HUMAN	runt-related transcription factor 1 isoform	201	Pro/Ser/Thr-rich.			Missing: No DNA-binding.	myeloid cell differentiation|negative regulation of granulocyte differentiation|positive regulation of angiogenesis|positive regulation of granulocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus|nucleus	ATP binding|calcium ion binding|DNA binding|DNA binding|protein binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding	p.R201Q(15)|p.R201*(8)		haematopoietic_and_lymphoid_tissue(383)|lung(2)|ovary(1)|central_nervous_system(1)	387						AGCTGCTCCAGTTCACTGAGC	0.562			T	RPL22|MDS1|EVI1|CBFA2T3|CBFA2T1|ETV6|LAF4	AML|preB- ALL|T-ALL				Platelet_disorder_associated_with_Myeloid_Malignancies				53	65					0	0	0.000781405	0	0
DOPEY2	9980	broad.mit.edu	37	21	37602855	37602855	+	Silent	SNP	C	T	T	rs141312847		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr21:37602855C>T	uc002yvg.2	+	14	1852	c.1773C>T	c.(1771-1773)ATC>ATT	p.I591I	DOPEY2_uc011aeb.1_Silent_p.I591I	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	591					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						ACAGTGGGATCGGGCTCAGTG	0.522													49	53					0	0	0.000781405	0	0
PSMG1	8624	broad.mit.edu	37	21	40553707	40553707	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr21:40553707T>G	uc002yxi.2	-	2	361	c.232A>C	c.(232-234)AAT>CAT	p.N78H	PSMG1_uc002yxj.2_Missense_Mutation_p.N78H|PSMG1_uc010gob.2_Intron	NM_003720	NP_003711	O95456	PSMG1_HUMAN	Down syndrome critical region protein 2 isoform	78					proteasome assembly	endoplasmic reticulum	protein binding				0		Prostate(19;8.44e-08)				CCTACTGCATTATTTCCTATA	0.313													44	52					0	0	0.000781405	0	0
PDE9A	5152	broad.mit.edu	37	21	44171281	44171281	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr21:44171281C>T	uc002zbm.2	+	9	772	c.709C>T	c.(709-711)CGA>TGA	p.R237*	PDE9A_uc002zbn.2_Nonsense_Mutation_p.R110*|PDE9A_uc002zbo.2_Nonsense_Mutation_p.R184*|PDE9A_uc002zbp.2_Nonsense_Mutation_p.R30*|PDE9A_uc002zbq.2_Nonsense_Mutation_p.R135*|PDE9A_uc002zbs.2_Nonsense_Mutation_p.R30*|PDE9A_uc002zbr.2_Nonsense_Mutation_p.R30*|PDE9A_uc002zbt.2_Nonsense_Mutation_p.R109*|PDE9A_uc002zbu.2_Nonsense_Mutation_p.R103*|PDE9A_uc002zbv.2_Nonsense_Mutation_p.R77*|PDE9A_uc002zbw.2_Nonsense_Mutation_p.R20*|PDE9A_uc002zbx.2_Nonsense_Mutation_p.R177*|PDE9A_uc002zby.2_Nonsense_Mutation_p.R20*|PDE9A_uc002zbz.2_Nonsense_Mutation_p.R129*|PDE9A_uc002zca.2_Nonsense_Mutation_p.R196*|PDE9A_uc002zcb.2_Nonsense_Mutation_p.R211*|PDE9A_uc002zcc.2_Nonsense_Mutation_p.R136*|PDE9A_uc002zcd.2_Nonsense_Mutation_p.R151*|PDE9A_uc002zce.2_Nonsense_Mutation_p.R170*|PDE9A_uc002zcf.2_Nonsense_Mutation_p.R30*|PDE9A_uc002zcg.2_Nonsense_Mutation_p.R30*|PDE9A_uc002zch.2_Nonsense_Mutation_p.R20*|PDE9A_uc010gpf.1_Nonsense_Mutation_p.R30*	NM_002606	NP_002597	O76083	PDE9A_HUMAN	phosphodiesterase 9A isoform a	237					platelet activation|signal transduction	cytosol|endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm|ruffle membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|skin(1)	2						GTTGACTCCTCGACGCGATGT	0.557													97	137					0	0	0.000781405	0	0
PCNT	5116	broad.mit.edu	37	21	47864701	47864701	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr21:47864701G>T	uc002zji.3	+	46	10041	c.9934G>T	c.(9934-9936)GTG>TTG	p.V3312L	PCNT_uc002zjj.2_Missense_Mutation_p.V3115L	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	3312					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					CCATTTAGAAGTGATCCAGCA	0.438													11	50					9.31168e-06	8.88536e-05	0.000151284	1	0
TXNRD2	10587	broad.mit.edu	37	22	19898968	19898968	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr22:19898968G>A	uc011ahc.1	-	8	627	c.594C>T	c.(592-594)ATC>ATT	p.I198I	TXNRD2_uc002zql.1_5'UTR|TXNRD2_uc002zqm.1_RNA|TXNRD2_uc002zqn.1_RNA|TXNRD2_uc002zqo.1_RNA|TXNRD2_uc002zqp.1_RNA|TXNRD2_uc002zqr.1_Silent_p.I197I|TXNRD2_uc010grv.1_Silent_p.I198I|TXNRD2_uc002zqj.1_RNA|TXNRD2_uc002zqs.2_Silent_p.I166I	NM_006440	NP_006431	Q9NNW7	TRXR2_HUMAN	thioredoxin reductase 2 precursor	198					cell redox homeostasis|response to oxygen radical	mitochondrion	flavin adenine dinucleotide binding|NADP binding|thioredoxin-disulfide reductase activity			ovary(2)	2	Colorectal(54;0.0993)					AGGCACCTTCGATCTGTCAAG	0.507													21	23					0	0	0.000375601	0	0
PIWIL3	440822	broad.mit.edu	37	22	25131705	25131706	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr22:25131705_25131706GG>TT	uc003abd.1	-	13	2020_2021	c.1603_1604CC>AA	c.(1603-1605)CCC>AAC	p.P535N	PIWIL3_uc011ajx.1_Missense_Mutation_p.P426N|PIWIL3_uc011ajy.1_Missense_Mutation_p.P426N|PIWIL3_uc010gut.1_Missense_Mutation_p.P535N	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	535					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						TATGCCCATGGGGGCTGTGACA	0.386													10	213					0	0	6.4e-05	0	0
AP1B1	162	broad.mit.edu	37	22	29727460	29727460	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr22:29727460G>A	uc003afj.2	-	19	2686	c.2502C>T	c.(2500-2502)CTC>CTT	p.L834L	AP1B1_uc003afi.2_Silent_p.L827L|AP1B1_uc003afk.2_Silent_p.L827L|AP1B1_uc003afl.2_Silent_p.L807L|AP1B1_uc003afh.2_Silent_p.L31L|AP1B1_uc011ako.1_Silent_p.L387L	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	834					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						CCTCCACAAAGAGGATGTGCA	0.582													76	98					0	0	0.000781405	0	0
RFPL3	10738	broad.mit.edu	37	22	32756441	32756441	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr22:32756441G>A	uc003amj.2	+	2	781	c.576G>A	c.(574-576)TGG>TGA	p.W192*	RFPL3_uc010gwn.2_Nonsense_Mutation_p.W163*|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	192	B30.2/SPRY.						zinc ion binding			ovary(1)	1						GCACAGAATGGGACCTGGGAG	0.562													38	63					0	0	0.000437636	0	0
ADSL	158	broad.mit.edu	37	22	40761016	40761016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr22:40761016C>T	uc003ayp.3	+	12	1383	c.1324C>T	c.(1324-1326)CAT>TAT	p.H442Y	ADSL_uc003ays.3_Intron|ADSL_uc003ayq.3_Missense_Mutation_p.H456Y|ADSL_uc003ayr.3_Missense_Mutation_p.H218Y|ADSL_uc003ayt.3_Missense_Mutation_p.H427Y	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	442					AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						CCAGTTGGATCATTTACTGGA	0.517													27	112					0	0	0.000339439	0	0
MEI1	150365	broad.mit.edu	37	22	42128253	42128253	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr22:42128253C>T	uc003baz.1	+	10	1126	c.1101C>T	c.(1099-1101)ATC>ATT	p.I367I	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc003bay.3_Silent_p.I367I|MEI1_uc011apd.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	367				I -> T (in Ref. 4; AAH35720).			binding			central_nervous_system(1)|skin(1)	2						TGGTAGGGATCGAGGCAGTGG	0.557													8	7					0	0	0.000442599	0	0
EFCAB6	64800	broad.mit.edu	37	22	43972313	43972313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr22:43972313C>T	uc003bdy.1	-	26	3499	c.3284G>A	c.(3283-3285)GGA>GAA	p.G1095E	EFCAB6_uc003bdz.1_Missense_Mutation_p.G943E|EFCAB6_uc010gzi.1_Missense_Mutation_p.G943E|EFCAB6_uc010gzj.1_Missense_Mutation_p.G321E	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1095	EF-hand 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AAGAACTTGTCCGAATTCTGT	0.323													49	83					0	0	0.000781405	0	0
MOV10L1	54456	broad.mit.edu	37	22	50546581	50546581	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr22:50546581G>A	uc003bjj.2	+	4	542	c.459G>A	c.(457-459)AAG>AAA	p.K153K	MOV10L1_uc003bjk.3_Silent_p.K153K|MOV10L1_uc011arp.1_Silent_p.K133K|MOV10L1_uc010han.2_Silent_p.K133K	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	153					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		AGCCCTGCAAGGGAGACTGGG	0.532													21	26					0	0	0.000295444	0	0
ITPR1	3708	broad.mit.edu	37	3	4715049	4715049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:4715049C>T	uc003bqa.2	+	21	2782	c.2434C>T	c.(2434-2436)CCC>TCC	p.P812S	ITPR1_uc010hca.1_Missense_Mutation_p.P797S|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Missense_Mutation_p.P797S	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	812	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GTCGGAGATTCCCTCGGAGAT	0.537													59	72					0	0	0.000781405	0	0
ITPR1	3708	broad.mit.edu	37	3	4725105	4725105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:4725105G>A	uc003bqa.2	+	27	3518	c.3170G>A	c.(3169-3171)GGC>GAC	p.G1057D	ITPR1_uc010hca.1_Missense_Mutation_p.G1042D|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_5'UTR	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1066	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GATGACCACGGCGGCAGAACC	0.587													71	83					0	0	0.000781405	0	0
EDEM1	9695	broad.mit.edu	37	3	5229591	5229591	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:5229591A>C	uc003bqi.2	+	1	233	c.101A>C	c.(100-102)TAC>TCC	p.Y34S	EDEM1_uc011asz.1_Intron|EDEM1_uc003bqh.2_Missense_Mutation_p.Y34S	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like	34	Lumenal (Potential).				ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		ATGGGCTTCTACCAGCGCTTT	0.701													5	6					0	0	0.000602214	0	0
SLC6A11	6538	broad.mit.edu	37	3	10975766	10975766	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:10975766T>A	uc003bvz.2	+	12	1523	c.1489T>A	c.(1489-1491)TAT>AAT	p.Y497N		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	497					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		CAACCGGTTCTATGATAACAT	0.507													35	46					0	0	0.000953801	0	0
NUP210	23225	broad.mit.edu	37	3	13367412	13367412	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:13367412G>A	uc003bxv.1	-	33	4610	c.4527C>T	c.(4525-4527)AGC>AGT	p.S1509S		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1509	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TGGCCGAGGAGCTCCAGGTTC	0.627													41	55					0	0	0.000680045	0	0
SCN5A	6331	broad.mit.edu	37	3	38622628	38622628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:38622628G>A	uc003cio.2	-	17	3216	c.3022C>T	c.(3022-3024)CCC>TCC	p.P1008S	SCN5A_uc003cin.2_Missense_Mutation_p.P1008S|SCN5A_uc003cil.3_Missense_Mutation_p.P1008S|SCN5A_uc010hhi.2_Missense_Mutation_p.P1008S|SCN5A_uc010hhk.2_Missense_Mutation_p.P1008S|SCN5A_uc011ayr.1_Missense_Mutation_p.P1008S|SCN5A_uc010hhj.1_Missense_Mutation_p.P619S	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1008					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGGGAGTAGGGGGTGGCAATG	0.692													10	13					0	0	0.000978159	0	0
SCN10A	6336	broad.mit.edu	37	3	38798606	38798606	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:38798606G>T	uc003ciq.2	-	8	995	c.995C>A	c.(994-996)CCG>CAG	p.P332Q		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	332	I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GTTAAAATCCGGGTTGTCAGA	0.448													25	22					4.87955e-14	4.70576e-13	0.000878237	1	0
WDR48	57599	broad.mit.edu	37	3	39135452	39135452	+	Silent	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:39135452T>C	uc003cit.2	+	18	1843	c.1833T>C	c.(1831-1833)TCT>TCC	p.S611S	WDR48_uc011ayt.1_Silent_p.S602S|WDR48_uc011ayu.1_Silent_p.S529S|WDR48_uc011ayv.1_Silent_p.S336S|WDR48_uc003ciu.2_RNA	NM_020839	NP_065890	Q8TAF3	WDR48_HUMAN	WD repeat domain 48	611					interspecies interaction between organisms|protein deubiquitination	lysosome|nucleus	protein binding			ovary(1)|breast(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		ATAATGAGTCTCAAACCACTA	0.368													9	23					0	0	0.000274275	0	0
CCR8	1237	broad.mit.edu	37	3	39374497	39374497	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:39374497G>A	uc010hhr.2	+	2	813	c.675G>A	c.(673-675)CTG>CTA	p.L225L	CCR8_uc003cjm.2_Silent_p.L142L	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	225	Cytoplasmic (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		TGCACCAGCTGAAGAGGTGTC	0.418													9	8					0	0	0.000673444	0	0
ZNF662	389114	broad.mit.edu	37	3	42956121	42956121	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:42956121C>T	uc003cmi.2	+	5	908	c.556C>T	c.(556-558)CTA>TTA	p.L186L	ZNF662_uc003cmk.2_Silent_p.L212L|ZNF662_uc003cmj.2_Silent_p.L78L	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	186					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		TCACAAAATTCTAAATGAGCA	0.353													23	30					0	0	0.000375601	0	0
CCR2	729230	broad.mit.edu	37	3	46399426	46399426	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:46399426C>T	uc003cpn.3	+	2	893	c.408C>T	c.(406-408)ATC>ATT	p.I136I	CCR2_uc003cpm.3_Silent_p.I136I	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	136	Helical; Name=3; (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		TCCTGACAATCGATAGATACC	0.463													111	170					0	0	0.000781405	0	0
TDGF1	6997	broad.mit.edu	37	3	46622733	46622733	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:46622733A>G	uc003cpv.2	+	6	840	c.560A>G	c.(559-561)TAC>TGC	p.Y187C	LRRC2_uc003cpu.3_5'Flank	NM_003212	NP_003203	P13385	TDGF1_HUMAN	teratocarcinoma-derived growth factor 1	187					activation of MAPK activity|anterior/posterior axis specification, embryo|mammary gland development|morphogenesis of a branching structure|negative regulation of apoptosis|peptidyl-serine phosphorylation|positive regulation of cell migration|positive regulation of peptidyl-tyrosine phosphorylation	anchored to membrane|cell surface|extrinsic to plasma membrane	growth factor activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		ATACAAAGCTACTATTAATCG	0.413													48	63					0	0	0.000781405	0	0
BSN	8927	broad.mit.edu	37	3	49688293	49688293	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:49688293G>A	uc003cxe.3	+	4	1881	c.1767G>A	c.(1765-1767)CAG>CAA	p.Q589Q		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	589	3.|3 X 7 AA tandem repeats of K-A-S-P-[LQ]- [APS]-[KST].				synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCAGCCCCCAGGCCAAGCCCC	0.657													48	39					0	0	0.000781405	0	0
BSN	8927	broad.mit.edu	37	3	49692023	49692024	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:49692023_49692024CC>TT	uc003cxe.3	+	5	5148_5149	c.5034_5035CC>TT	c.(5032-5037)ATCCTC>ATTTTC	p.L1679F		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1679					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CTCCCATCATCCTCACTGACCA	0.614													21	20					0	0	6.4e-05	0	0
RNF123	63891	broad.mit.edu	37	3	49737767	49737767	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:49737767C>T	uc003cxh.2	+	13	1178	c.1092C>T	c.(1090-1092)CTC>CTT	p.L364L	RNF123_uc010hky.1_Silent_p.L26L|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	364						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		TCCTGGACCTCTTGTGGCTCT	0.587													12	23					0	0	0.000151284	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50414964	50414964	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:50414964C>T	uc003daq.2	-	17	1598	c.1560G>A	c.(1558-1560)CTG>CTA	p.L520L	CACNA2D2_uc003dap.2_Silent_p.L520L	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	520	Cache.|Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	CGCCCAGGATCAGCTGGTTCT	0.602													8	20					0	0	0.000673444	0	0
RPL29	6159	broad.mit.edu	37	3	52028085	52028086	+	Silent	DNP	GG	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:52028085_52028086GG>AA	uc003dcs.2	-	4	253_254	c.159_160CC>TT	c.(157-162)GGCCTA>GGTTTA	p.53_54GL>GL		NM_000992	NP_000983	P47914	RL29_HUMAN	ribosomal protein L29	53_54					embryo implantation|endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	heparin binding|protein binding|RNA binding|structural constituent of ribosome				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		ATCTTCTTTAGGCCCTTTTTGT	0.535													20	15					0	0	6.4e-05	0	0
FAM3D	131177	broad.mit.edu	37	3	58641329	58641329	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:58641329C>T	uc003dkq.2	-	2	260	c.-37_splice	c.e2-1			NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D						negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		CAGCTTCCACCTATGGAGAGA	0.483													14	15					0	0	0.000219431	0	0
KBTBD8	84541	broad.mit.edu	37	3	67053665	67053665	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:67053665C>T	uc003dmy.2	+	3	327	c.274C>T	c.(274-276)CGA>TGA	p.R92*	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	92	BTB.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		AAAAGAAGTTCGAATAGTTGG	0.378													50	49					0	0	0.000781405	0	0
ROBO2	6092	broad.mit.edu	37	3	77684063	77684063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:77684063C>T	uc003dpy.3	+	24	4446	c.3803C>T	c.(3802-3804)CCA>CTA	p.P1268L	ROBO2_uc003dpz.2_Missense_Mutation_p.P1333L|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.P1272L	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1268	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CCTACCAGCCCATTTTCTACT	0.468													25	49					0	0	0.000279167	0	0
ZPLD1	131368	broad.mit.edu	37	3	102195856	102195856	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:102195856A>C	uc003dvs.1	+	17	1925	c.1043A>C	c.(1042-1044)GAT>GCT	p.D348A	ZPLD1_uc003dvt.1_Missense_Mutation_p.D364A|ZPLD1_uc011bhg.1_Missense_Mutation_p.D348A	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	348	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						TTCCCCTCAGATGAGACTCCA	0.303													31	29					0	0	0.000319135	0	0
GUCA1C	9626	broad.mit.edu	37	3	108672495	108672495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:108672495C>T	uc003dxj.2	-	1	183	c.115G>A	c.(115-117)GAA>AAA	p.E39K	GUCA1C_uc003dxk.2_Missense_Mutation_p.E39K	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	39	EF-hand 1.				signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						GTCTTAAATTCATGTAGTGTT	0.388													29	38					0	0	0.000409698	0	0
CD200R1	131450	broad.mit.edu	37	3	112648073	112648073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:112648073C>T	uc003dzk.1	-	3	648	c.415G>A	c.(415-417)GGG>AGG	p.G139R	CD200R1_uc003dzj.1_Missense_Mutation_p.G162R|CD200R1_uc011bhx.1_Missense_Mutation_p.G117R|CD200R1_uc003dzl.1_Missense_Mutation_p.G162R|CD200R1_uc003dzm.1_Missense_Mutation_p.G139R	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	139	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						TGGAAATTCCCATCAGGTGTT	0.443													30	32					0	0	0.000491102	0	0
CASR	846	broad.mit.edu	37	3	122002712	122002712	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:122002712C>T	uc003eev.3	+	7	2283	c.1911C>T	c.(1909-1911)TTC>TTT	p.F637F	CASR_uc003eew.3_Silent_p.F647F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	637	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TTATCAAGTTCCGCAACACAC	0.562													29	28					0	0	0.00106085	0	0
KALRN	8997	broad.mit.edu	37	3	124436155	124436155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:124436155G>A	uc003ehg.2	+	59	8465	c.8338G>A	c.(8338-8340)GTA>ATA	p.V2780I	KALRN_uc003ehk.2_Missense_Mutation_p.V1083I	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2779	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GGAGGAAAAAGTAGCTTTCTA	0.428													39	59					0	0	0.000228196	0	0
NPHP3	27031	broad.mit.edu	37	3	132419248	132419248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:132419248G>A	uc003epe.1	-	11	1750	c.1673C>T	c.(1672-1674)TCC>TTC	p.S558F	NPHP3_uc003epd.1_5'UTR|NPHP3_uc003epf.1_Missense_Mutation_p.S313F	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	558					maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						CACAAAATGGGAAAGAATCAG	0.373													25	24					0	0	0.000339439	0	0
RAB6B	51560	broad.mit.edu	37	3	133553457	133553457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:133553457G>A	uc003epy.2	-	7	905	c.524C>T	c.(523-525)CCC>CTC	p.P175L	RAB6B_uc011blu.1_Missense_Mutation_p.P162L	NM_016577	NP_057661	Q9NRW1	RAB6B_HUMAN	RAB6B, member RAS oncogene family	175					protein transport|retrograde vesicle-mediated transport, Golgi to ER|small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle|Golgi membrane	GTP binding|GTPase activity|protein binding			pancreas(1)	1						CTCCATTCCGGGTAGAGCCGA	0.483													31	52					0	0	0.000491102	0	0
CEP70	80321	broad.mit.edu	37	3	138219288	138219289	+	Missense_Mutation	DNP	CC	AA	AA	rs141208365	byFrequency	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:138219288_138219289CC>AA	uc003esl.2	-	15	1687_1688	c.1489_1490GG>TT	c.(1489-1491)GGA>TTA	p.G497L	CEP70_uc011bmk.1_Missense_Mutation_p.G477L|CEP70_uc011bml.1_Missense_Mutation_p.G479L|CEP70_uc011bmm.1_Missense_Mutation_p.G345L|CEP70_uc003esm.2_Missense_Mutation_p.G497L	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	497	TPR.				G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						GTTCATTTCTCCAAGCCTAGTA	0.347													15	409					0	0	6.4e-05	0	0
TFDP2	7029	broad.mit.edu	37	3	141682663	141682663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:141682663G>A	uc003eun.3	-	10	1254	c.875C>T	c.(874-876)TCC>TTC	p.S292F	TFDP2_uc003euk.3_Missense_Mutation_p.S205F|TFDP2_uc010hur.2_Missense_Mutation_p.S232F|TFDP2_uc003eul.3_Missense_Mutation_p.S232F|TFDP2_uc011bnf.1_Missense_Mutation_p.S195F|TFDP2_uc011bng.1_Missense_Mutation_p.S156F|TFDP2_uc003eum.3_Missense_Mutation_p.S232F	NM_006286	NP_006277	Q14188	TFDP2_HUMAN	transcription factor Dp-2 (E2F dimerization	292	Dimerization (Potential).|DCB2.				cell cycle	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|transcription factor binding			kidney(1)	1						CTTGTCACTGGAGATGCTGCA	0.453													43	51					0	0	0.000781405	0	0
AADACL2	344752	broad.mit.edu	37	3	151475240	151475240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:151475240G>A	uc003ezc.2	+	5	1184	c.1064G>A	c.(1063-1065)CGA>CAA	p.R355Q	AADACL2_uc010hvn.2_Missense_Mutation_p.R142Q	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	355						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			ACAAGACTTCGAAATGTTGGA	0.358													28	37					0	0	0.000279167	0	0
WDR49	151790	broad.mit.edu	37	3	167240235	167240235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:167240235G>A	uc003fev.1	-	12	1892	c.1586C>T	c.(1585-1587)CCT>CTT	p.P529L	WDR49_uc003feu.1_Missense_Mutation_p.P354L|WDR49_uc011bpd.1_Intron|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	529										large_intestine(1)|ovary(1)|skin(1)	3						ATCTCTTTTAGGAAGGAAAAG	0.274													7	15					0	0	8.12818e-05	0	0
MECOM	2122	broad.mit.edu	37	3	168810878	168810878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:168810878G>A	uc003ffi.3	-	13	2737	c.2468C>T	c.(2467-2469)TCG>TTG	p.S823L	MECOM_uc010hwk.1_Missense_Mutation_p.S837L|MECOM_uc003ffj.3_Missense_Mutation_p.S888L|MECOM_uc011bpi.1_Missense_Mutation_p.S815L|MECOM_uc003ffn.3_Missense_Mutation_p.S823L|MECOM_uc003ffk.2_Missense_Mutation_p.S814L|MECOM_uc003ffl.2_Missense_Mutation_p.S974L|MECOM_uc011bpj.1_Missense_Mutation_p.S1011L|MECOM_uc011bpk.1_Missense_Mutation_p.S813L	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	823					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						ATGAGGCGACGATGTTGCTGT	0.388													7	20					0	0	0.000274275	0	0
MECOM	2122	broad.mit.edu	37	3	168833417	168833417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:168833417C>T	uc003ffi.3	-	7	1948	c.1679G>A	c.(1678-1680)CGA>CAA	p.R560Q	MECOM_uc010hwk.1_Missense_Mutation_p.R583Q|MECOM_uc003ffj.3_Missense_Mutation_p.R625Q|MECOM_uc011bpi.1_Missense_Mutation_p.R561Q|MECOM_uc003ffn.3_Missense_Mutation_p.R560Q|MECOM_uc003ffk.2_Missense_Mutation_p.R560Q|MECOM_uc003ffl.2_Missense_Mutation_p.R720Q|MECOM_uc011bpj.1_Missense_Mutation_p.R748Q|MECOM_uc011bpk.1_Missense_Mutation_p.R550Q|MECOM_uc010hwn.2_Missense_Mutation_p.R748Q	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	560					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CTCATCCTTTCGCTTAGTGGT	0.517													17	18					0	0	0.000958276	0	0
ABCF3	55324	broad.mit.edu	37	3	183908988	183908988	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:183908988A>G	uc003fmz.2	+	16	1647	c.1514A>G	c.(1513-1515)CAC>CGC	p.H505R	ABCF3_uc003fna.2_Missense_Mutation_p.H499R|ABCF3_uc003fnb.2_Missense_Mutation_p.H186R	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	505	ABC transporter 2.						ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GATCCGAAGCACGTCATCTTC	0.542													76	74					0	0	0.000781405	0	0
C3orf59	151963	broad.mit.edu	37	3	192517330	192517330	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:192517330G>A	uc011bsp.1	-	2	642	c.321C>T	c.(319-321)GTC>GTT	p.V107V		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	107											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		CCCGGGCATAGACATTAAGCT	0.522													15	26					0	0	0.000219431	0	0
ATP13A5	344905	broad.mit.edu	37	3	193039583	193039583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:193039583G>A	uc011bsq.1	-	16	1802	c.1802C>T	c.(1801-1803)TCC>TTC	p.S601F		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	601					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CAGGCTCGAGGAAAATGGAAA	0.502													27	17					0	0	0.000339439	0	0
ATP13A4	84239	broad.mit.edu	37	3	193120490	193120490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:193120490C>T	uc003ftd.2	-	30	3650	c.3542G>A	c.(3541-3543)GGA>GAA	p.G1181E	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	1181	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GTAAGACACTCCTCTGCCACA	0.463													17	19					0	0	0.000958276	0	0
ATP13A3	79572	broad.mit.edu	37	3	194177885	194177885	+	Silent	SNP	A	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:194177885A>T	uc003fty.3	-	6	900	c.498T>A	c.(496-498)GTT>GTA	p.V166V		NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	166					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		ACGTACAAGAAACACCTTCAT	0.328													25	41					0	0	0.000586117	0	0
PIGZ	80235	broad.mit.edu	37	3	196674066	196674066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:196674066G>A	uc003fxh.2	-	3	1849	c.1702C>T	c.(1702-1704)CTC>TTC	p.L568F		NM_025163	NP_079439	Q86VD9	PIGZ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	568					GPI anchor biosynthetic process	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			ovary(3)	3	all_cancers(143;1.05e-08)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.29e-24)|all cancers(36;2.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00603)		TGAAGACTGAGGTGGTCCCTC	0.542													40	47					0	0	0.000680045	0	0
PIGG	54872	broad.mit.edu	37	4	501335	501335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:501335G>A	uc003gak.3	+	4	848	c.712G>A	c.(712-714)GAG>AAG	p.E238K	PIGG_uc003gaj.3_Missense_Mutation_p.E238K|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Intron|PIGG_uc003gal.3_Missense_Mutation_p.E149K|PIGG_uc003gai.2_RNA|PIGG_uc011buw.1_Missense_Mutation_p.E116K|PIGG_uc003gam.2_Missense_Mutation_p.E149K|PIGG_uc003gan.2_Missense_Mutation_p.E149K	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	238	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						GAAGCTGAGCGAGATGGACAG	0.557													11	16					0	0	0.000673444	0	0
TACC3	10460	broad.mit.edu	37	4	1730378	1730378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:1730378C>T	uc003gdo.2	+	4	1357	c.1249C>T	c.(1249-1251)CCG>TCG	p.P417S	TACC3_uc010ibz.2_Missense_Mutation_p.P417S|TACC3_uc003gdp.2_Intron|TACC3_uc010ica.2_5'Flank	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	417						centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			AAACTTCATCCCGTTCGGAGG	0.622													37	28					0	0	0.000589545	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2272549	2272549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:2272549G>A	uc003gex.1	-	13	2886	c.2567C>T	c.(2566-2568)CCG>CTG	p.P856L	ZFYVE28_uc011bvk.1_Missense_Mutation_p.P786L|ZFYVE28_uc011bvl.1_Missense_Mutation_p.P826L|ZFYVE28_uc003gew.1_Missense_Mutation_p.P742L	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	856	FYVE-type.				negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						GCGGGGCAGCGGTGCTGAGTG	0.662													29	30					0	0	0.00058488	0	0
LAP3	51056	broad.mit.edu	37	4	17606287	17606287	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:17606287C>T	uc003gph.1	+	11	1419	c.1257C>T	c.(1255-1257)TTC>TTT	p.F419F		NM_015907	NP_056991	P28838	AMPL_HUMAN	leucine aminopeptidase 3	419					proteolysis	nucleus	aminopeptidase activity|magnesium ion binding|manganese ion binding|metalloexopeptidase activity|zinc ion binding				0						ACAAACTCTTCGAGGTAGGAA	0.413													22	27					0	0	0.000586117	0	0
TLR1	7096	broad.mit.edu	37	4	38799846	38799846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:38799846G>A	uc003gtl.2	-	4	881	c.607C>T	c.(607-609)CAT>TAT	p.H203Y		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	203	Extracellular (Potential).				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						AAAATAAAATGGAATTCTTTG	0.383													14	23					0	0	0.000308642	0	0
CNGA1	1259	broad.mit.edu	37	4	47939314	47939314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:47939314C>T	uc003gxt.3	-	11	1463	c.1197G>A	c.(1195-1197)ATG>ATA	p.M399I	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.M468I	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	399	Extracellular (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						TGTTGGAAATCATAGAACCTA	0.388													39	43					0	0	0.000953801	0	0
SGCB	6443	broad.mit.edu	37	4	52894173	52894173	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:52894173G>A	uc003gzj.2	-	5	774	c.714C>T	c.(712-714)ACC>ACT	p.T238T	SGCB_uc011bzp.1_Silent_p.T168T	NM_000232	NP_000223	Q16585	SGCB_HUMAN	sarcoglycan, beta	238	Extracellular (Potential).|Cys-rich.				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to plasma membrane|sarcoglycan complex|sarcolemma					0			GBM - Glioblastoma multiforme(4;7.63e-12)|LUSC - Lung squamous cell carcinoma(32;0.00204)			GAAATTCAATGGTTTTGCCCA	0.343													73	66					0	0	0.000781405	0	0
SCFD2	152579	broad.mit.edu	37	4	53773709	53773709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:53773709G>A	uc003gzu.2	-	7	1891	c.1757C>T	c.(1756-1758)CCC>CTC	p.P586L	SCFD2_uc010igm.2_Intron	NM_152540	NP_689753	Q8WU76	SCFD2_HUMAN	sec1 family domain containing 2	586					protein transport|vesicle docking involved in exocytosis					ovary(2)|pancreas(1)	3			GBM - Glioblastoma multiforme(3;1.07e-26)|LUSC - Lung squamous cell carcinoma(32;0.0134)			TGGCCTCTCGGGATGAAATAT	0.403													25	26					0	0	0.000720815	0	0
KIAA1211	57482	broad.mit.edu	37	4	57182676	57182676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:57182676C>T	uc003hbk.2	+	8	3399	c.3008C>T	c.(3007-3009)CCG>CTG	p.P1003L	KIAA1211_uc010iha.2_Missense_Mutation_p.P996L|KIAA1211_uc011bzz.1_Missense_Mutation_p.P913L|KIAA1211_uc003hbm.1_Missense_Mutation_p.P889L	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	1003	Pro-rich.									ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					CCAAGTGAGCCGTCCAAGGAG	0.657													14	3					0	0	0.000422831	0	0
POLR2B	5431	broad.mit.edu	37	4	57871556	57871556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:57871556C>T	uc003hcl.1	+	8	1088	c.1045C>T	c.(1045-1047)CCT>TCT	p.P349S	POLR2B_uc011cae.1_Missense_Mutation_p.P342S|POLR2B_uc011caf.1_Missense_Mutation_p.P274S	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	349					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					AGAAATGCTCCCTCATGTTGG	0.338													69	146					0	0	0.000781405	0	0
UGT2B15	7366	broad.mit.edu	37	4	69512983	69512983	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:69512983G>A	uc011cal.1	-	6	1470	c.1432C>T	c.(1432-1434)CGA>TGA	p.R478*		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	478					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						GCTGCGACTCGAAGGTGCTTG	0.478													51	31					0	0	0.000781405	0	0
UGT2A1	10941	broad.mit.edu	37	4	70512731	70512731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:70512731C>T	uc003hem.3	-	1	695	c.632G>A	c.(631-633)AGA>AAA	p.R211K	UGT2A1_uc011caq.1_Missense_Mutation_p.R211K|UGT2A1_uc010ihu.2_Missense_Mutation_p.R211K|UGT2A1_uc010iht.2_Missense_Mutation_p.R211K	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	211	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						GATGAAATTTCTTATTCTGTC	0.388													20	11					0	0	0.000295444	0	0
AFM	173	broad.mit.edu	37	4	74361037	74361037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:74361037G>A	uc003hhb.2	+	9	1110	c.1079G>A	c.(1078-1080)AGG>AAG	p.R360K		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	360	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GAATACTCAAGGAGACATCCA	0.348													32	17					0	0	0.000409698	0	0
FRAS1	80144	broad.mit.edu	37	4	79236762	79236762	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:79236762T>G	uc003hlb.2	+	16	2133	c.1693T>G	c.(1693-1695)TGT>GGT	p.C565G	FRAS1_uc003hkw.2_Missense_Mutation_p.C565G|FRAS1_uc003hky.1_Missense_Mutation_p.C269G|FRAS1_uc003hkz.2_Missense_Mutation_p.C269G|FRAS1_uc003hla.1_Missense_Mutation_p.C76G	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	565	FU 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGACCAATCCTGTGACAGTTG	0.478													16	96					0	0	0.000566183	0	0
COL25A1	84570	broad.mit.edu	37	4	109773436	109773436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:109773436C>T	uc003hze.1	-	25	1876	c.1345G>A	c.(1345-1347)GGT>AGT	p.G449S	COL25A1_uc003hzg.2_Missense_Mutation_p.G449S|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.G207S	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	449	Extracellular (Potential).|Collagen-like 6.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		CCAGGGGGACCCTAAATCAAG	0.358													8	24					0	0	0.000442599	0	0
LRIT3	345193	broad.mit.edu	37	4	110788925	110788925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:110788925G>A	uc003hzx.3	+	2	776	c.583G>A	c.(583-585)GGA>AGA	p.G195R	LRIT3_uc003hzw.3_Missense_Mutation_p.G57R	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	195	LRRCT.					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		GCGCCTCACAGGAATTTTGTT	0.458													15	41					0	0	0.000422831	0	0
EGF	1950	broad.mit.edu	37	4	110864560	110864560	+	Missense_Mutation	SNP	C	T	T	rs144013010		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:110864560C>T	uc003hzy.3	+	3	930	c.478C>T	c.(478-480)CCT>TCT	p.P160S	EGF_uc011cfu.1_Missense_Mutation_p.P160S|EGF_uc011cfv.1_Missense_Mutation_p.P160S	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	160	LDL-receptor class B 2.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity	p.P160S(1)		ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	TTTAAAATATCCTGCAAATGT	0.294													46	120					0	0	0.000781405	0	0
ENPEP	2028	broad.mit.edu	37	4	111397748	111397748	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:111397748C>T	uc003iab.3	+	1	520	c.178C>T	c.(178-180)CTG>TTG	p.L60L		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	60	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	TCCTTCCCACCTGCCTTCTTC	0.632													56	75					0	0	0.000781405	0	0
ANK2	287	broad.mit.edu	37	4	114161656	114161656	+	Silent	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:114161656T>C	uc003ibe.3	+	8	809	c.709T>C	c.(709-711)TTG>CTG	p.L237L	ANK2_uc003ibd.3_Silent_p.L216L|ANK2_uc003ibf.3_Silent_p.L237L|ANK2_uc003ibc.2_Silent_p.L213L|ANK2_uc011cgb.1_Silent_p.L252L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	237	ANK 7.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TTTTACCCCTTTGCACATAGC	0.438													24	69					0	0	0.000375601	0	0
KIAA1109	84162	broad.mit.edu	37	4	123270442	123270442	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:123270442C>T	uc003ieh.2	+	76	13455	c.13410C>T	c.(13408-13410)ACC>ACT	p.T4470T	KIAA1109_uc003iem.2_Silent_p.T826T	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4470					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TTGGAGGGACCATAGATGTCA	0.378													7	12					0	0	8.12818e-05	0	0
FAT4	79633	broad.mit.edu	37	4	126411080	126411080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:126411080C>T	uc003ifj.3	+	17	13103	c.13103C>T	c.(13102-13104)TCT>TTT	p.S4368F	FAT4_uc011cgp.1_Missense_Mutation_p.S2609F|FAT4_uc003ifi.1_Missense_Mutation_p.S1845F	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4368	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGCATTGCTTCTATGTGGTAT	0.443													136	111					0	0	0.000781405	0	0
FAT4	79633	broad.mit.edu	37	4	126412767	126412767	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:126412767G>A	uc003ifj.3	+	17	14790	c.14790G>A	c.(14788-14790)TGG>TGA	p.W4930*	FAT4_uc011cgp.1_Nonsense_Mutation_p.W3171*|FAT4_uc003ifi.1_Nonsense_Mutation_p.W2407*	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4930	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTTTCAACTGGGACAACCTTT	0.532													37	29					0	0	0.000270559	0	0
LARP1B	55132	broad.mit.edu	37	4	129127653	129127653	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:129127653C>T	uc003iga.2	+	18	2511	c.2380C>T	c.(2380-2382)CAG>TAG	p.Q794*	LARP1B_uc003igc.2_Nonsense_Mutation_p.Q213*|LARP1B_uc010ioa.1_RNA|LARP1B_uc003ige.2_Intron|LARP1B_uc003igd.2_RNA|LARP1B_uc003igf.2_Intron	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	794							RNA binding				0						AGAAATTTTTCAGGATTTCCA	0.313													52	127					0	0	0.000781405	0	0
PDGFC	56034	broad.mit.edu	37	4	157771497	157771497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:157771497G>A	uc003iph.1	-	2	681	c.190C>T	c.(190-192)CCT>TCT	p.P64S	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_Intron|PDGFC_uc011cir.1_5'UTR	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	64	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		TAAGTATGAGGAAACCTTGGG	0.368													56	27					0	0	0.000781405	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160271420	160271420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:160271420C>T	uc003iqg.3	+	20	3671	c.3361C>T	c.(3361-3363)CCA>TCA	p.P1121S		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	1121	Ser-rich.				cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		TCCTACTTCTCCACAGAGTTC	0.343													65	35					0	0	0.000781405	0	0
FSTL5	56884	broad.mit.edu	37	4	162680614	162680614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:162680614C>T	uc003iqh.2	-	6	1112	c.676G>A	c.(676-678)GAT>AAT	p.D226N	FSTL5_uc003iqi.2_Missense_Mutation_p.D225N|FSTL5_uc010iqv.2_Missense_Mutation_p.D225N	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	226	2 (Potential).|EF-hand 2.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		GCATTAAAATCATCATATTTC	0.338													46	119					0	0	0.000781405	0	0
SC4MOL	6307	broad.mit.edu	37	4	166263024	166263024	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:166263024C>T	uc003ire.2	+	6	938	c.808C>T	c.(808-810)CGA>TGA	p.R270*	SC4MOL_uc003irf.2_Nonsense_Mutation_p.R139*	NM_006745	NP_006736	Q15800	ERG25_HUMAN	sterol-C4-methyl oxidase-like isoform 1	270					cholesterol biosynthetic process|fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	C-4 methylsterol oxidase activity|iron ion binding				0	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0875)	NADH(DB00157)	ATGGTGGGATCGAATTTTTGG	0.373													83	45					0	0	0.000781405	0	0
DDX60	55601	broad.mit.edu	37	4	169201585	169201585	+	Silent	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:169201585A>G	uc003irp.2	-	14	2171	c.1879T>C	c.(1879-1881)TTG>CTG	p.L627L		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	627							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		CAGGATTTCAAAAAATCTTCC	0.378													55	29					0	0	0.000781405	0	0
CLCN3	1182	broad.mit.edu	37	4	170618536	170618537	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:170618536_170618537CC>TT	uc003isi.2	+	9	1723_1724	c.1214_1215CC>TT	c.(1213-1215)GCC>GTT	p.A405V	CLCN3_uc003ish.2_Missense_Mutation_p.A405V|CLCN3_uc011cjz.1_Missense_Mutation_p.A388V|CLCN3_uc011cka.1_Missense_Mutation_p.A378V|CLCN3_uc003isj.1_Missense_Mutation_p.A378V	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	405	Helical; (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		CTTTGGGGAGCCTTTTTCATTA	0.436													38	85					0	0	6.4e-05	0	0
ODZ3	55714	broad.mit.edu	37	4	183594347	183594347	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:183594347A>G	uc003ivd.1	+	6	1338	c.1301A>G	c.(1300-1302)AAA>AGA	p.K434R		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	434	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TATGGCCGGAAAGGCTTACCG	0.383													23	43					0	0	0.00106085	0	0
MLF1IP	79682	broad.mit.edu	37	4	185616448	185616448	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:185616448C>T	uc003iwq.2	-	13	1321	c.1251G>A	c.(1249-1251)CAG>CAA	p.Q417Q	MLF1IP_uc003iwp.2_RNA	NM_024629	NP_078905	Q71F23	CENPU_HUMAN	MLF1 interacting protein	417	Potential.				CenH3-containing nucleosome assembly at centromere|interspecies interaction between organisms|mitotic prometaphase|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|condensed chromosome kinetochore|cytosol|nucleoplasm					0		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Hepatocellular(41;0.000519)|Colorectal(36;0.00172)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.0299)|all_hematologic(60;0.0592)|Medulloblastoma(177;0.146)		all cancers(43;7.83e-28)|Epithelial(43;2.56e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-11)|Colorectal(24;3.27e-06)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.16e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000252)|COAD - Colon adenocarcinoma(29;0.000512)|LUSC - Lung squamous cell carcinoma(40;0.01)|READ - Rectum adenocarcinoma(43;0.0419)		CTTCTCATCCCTGGTCAAGGA	0.418													174	106					0	0	0.000781405	0	0
TLR3	7098	broad.mit.edu	37	4	187004117	187004117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:187004117C>T	uc003iyq.2	+	4	1378	c.1277C>T	c.(1276-1278)GCT>GTT	p.A426V	TLR3_uc011ckz.1_Missense_Mutation_p.A149V|TLR3_uc003iyr.2_Missense_Mutation_p.A149V	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	426	LRR 15.|Lumenal (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		GAGAGTGATGCTTTCTCTTGG	0.398													46	29					0	0	0.000509022	0	0
NKD2	85409	broad.mit.edu	37	5	1032326	1032326	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:1032326G>A	uc003jbt.1	+	4	206	c.201G>A	c.(199-201)CAG>CAA	p.Q67Q	NKD2_uc010itf.1_Silent_p.Q67Q	NM_033120	NP_149111	Q969F2	NKD2_HUMAN	naked cuticle homolog 2	67	Targeting to the basolateral cell membrane.				exocytosis|Wnt receptor signaling pathway	cytoplasmic membrane-bounded vesicle|plasma membrane	calcium ion binding|ubiquitin protein ligase binding				0	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;3.28e-09)		Epithelial(17;0.00093)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00417)|Lung(60;0.165)			GTCCCCTACAGGGTGAGTGCA	0.617													18	44					0	0	0.000566183	0	0
NSUN2	54888	broad.mit.edu	37	5	6632738	6632738	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:6632738G>A	uc003jdu.2	-	2	293	c.228C>T	c.(226-228)GCC>GCT	p.A76A	NSUN2_uc011cmk.1_Silent_p.A76A|NSUN2_uc003jdv.2_5'UTR|SRD5A1_uc003jdw.2_5'Flank|SRD5A1_uc011cml.1_5'Flank|SRD5A1_uc011cmm.1_5'Flank	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	76						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						TTCTTAAAGTGGCCGGGAGCG	0.552													95	61					0	0	0.000781405	0	0
PAPD7	11044	broad.mit.edu	37	5	6739885	6739885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:6739885C>T	uc003jdx.1	+	4	307	c.178C>T	c.(178-180)CCT>TCT	p.P60S	PAPD7_uc011cmn.1_Missense_Mutation_p.P51S	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	60					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						GGAGCGTCCTCCTTTACAGCT	0.582													21	43					0	0	0.000175454	0	0
DNAH5	1767	broad.mit.edu	37	5	13721244	13721244	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:13721244G>A	uc003jfd.2	-	71	12186	c.12144C>T	c.(12142-12144)CTC>CTT	p.L4048L	DNAH5_uc003jfc.2_Silent_p.L216L	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4048	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCATAGACAGGAGACAGATGA	0.498									Kartagener_syndrome				26	116					0	0	0.000279167	0	0
DNAH5	1767	broad.mit.edu	37	5	13919390	13919390	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:13919390C>T	uc003jfd.2	-	7	912	c.870G>A	c.(868-870)TGG>TGA	p.W290*	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	290	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCTTTTTTTCCAGTGCTCCA	0.527									Kartagener_syndrome				263	80					0	0	0.000781405	0	0
CDH10	1008	broad.mit.edu	37	5	24593451	24593451	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:24593451T>C	uc003jgr.1	-	2	481	c.149A>G	c.(148-150)CAT>CGT	p.H50R	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	50					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TTTTTGACGATGGAGAATTTT	0.393										HNSCC(23;0.051)			12	21					0	0	0.000219431	0	0
C5orf22	55322	broad.mit.edu	37	5	31538428	31538428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:31538428G>A	uc003jhj.3	+	4	566	c.439G>A	c.(439-441)GAG>AAG	p.E147K	C5orf22_uc011cnw.1_Intron|C5orf22_uc003jhk.3_Intron	NM_018356	NP_060826	Q49AR2	CE022_HUMAN	hypothetical protein LOC55322	147										ovary(2)	2						AGACCAGCTAGAGAACCAAAA	0.358													61	2					0	0	0.000781405	0	0
DNAJC21	134218	broad.mit.edu	37	5	34937619	34937619	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:34937619C>T	uc003jjc.2	+	5	854	c.627C>T	c.(625-627)TTC>TTT	p.F209F	DNAJC21_uc003jjb.2_Silent_p.F209F|DNAJC21_uc010iuu.1_Silent_p.F93F	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	209					protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			TGGTAGCTTTCATTCGTAAAA	0.463													36	4					0	0	0.000814825	0	0
IL6ST	3572	broad.mit.edu	37	5	55250752	55250752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:55250752G>A	uc003jqq.2	-	11	1591	c.1336C>T	c.(1336-1338)CCA>TCA	p.P446S	IL6ST_uc010iwb.2_Intron|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Missense_Mutation_p.P157S|IL6ST_uc003jqr.2_3'UTR	NM_002184	NP_002175	P40189	IL6RB_HUMAN	interleukin 6 signal transducer isoform 1	446	Extracellular (Potential).|Fibronectin type-III 4.				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			large_intestine(1)|ovary(1)	2		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				GATTCCCTTGGAGTAGTCCAT	0.383			O		hepatocellular ca								42	86					0	0	0.000781405	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64625228	64625228	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:64625228G>A	uc003jtp.2	-	9	2014	c.1200C>T	c.(1198-1200)ACC>ACT	p.T400T	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Silent_p.T21T	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	400	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CATGTGCAATGGTAAAAGCTG	0.418													10	7					0	0	0.000978159	0	0
TMEM161B	153396	broad.mit.edu	37	5	87502314	87502314	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:87502314A>G	uc003kjc.2	-	7	726	c.601T>C	c.(601-603)TTT>CTT	p.F201L	TMEM161B_uc011cty.1_Missense_Mutation_p.F190L|TMEM161B_uc010jax.2_RNA|TMEM161B_uc011ctz.1_Missense_Mutation_p.F68L|TMEM161B_uc011ctx.1_Missense_Mutation_p.F19L	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B	201						integral to membrane				skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		AAATTTGTAAACCCTGTGGGG	0.294													13	11					0	0	0.000219431	0	0
GPR98	84059	broad.mit.edu	37	5	89953898	89953898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:89953898G>A	uc003kju.2	+	21	4651	c.4555G>A	c.(4555-4557)GGA>AGA	p.G1519R	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1519	Calx-beta 10.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTTCAGACAGGGAGAAACTAA	0.383													61	30					0	0	0.000781405	0	0
GPR98	84059	broad.mit.edu	37	5	89992813	89992813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:89992813G>A	uc003kju.2	+	34	8101	c.8005G>A	c.(8005-8007)GAA>AAA	p.E2669K	GPR98_uc003kjt.2_Missense_Mutation_p.E375K|GPR98_uc003kjv.2_Missense_Mutation_p.E269K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2669	Calx-beta 18.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGAGGATGACGAAAGTATCAT	0.373													5	24					0	0	0.000602214	0	0
PCSK1	5122	broad.mit.edu	37	5	95729011	95729011	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:95729011C>T	uc003kls.1	-	14	2162	c.1956G>A	c.(1954-1956)GGG>GGA	p.G652G	PCSK1_uc010jbi.1_Silent_p.G342G	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	652					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCCTCCGGCCCCCTACGCTGC	0.557													4	26					0	0	0.00024832	0	0
LNPEP	4012	broad.mit.edu	37	5	96358022	96358022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:96358022C>T	uc003kmv.1	+	14	2909	c.2395C>T	c.(2395-2397)CTT>TTT	p.L799F	LNPEP_uc003kmw.1_Missense_Mutation_p.L785F	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	799	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		ATTTAAATTACTTCAAAACCA	0.363													12	12					0	0	0.000219431	0	0
DMXL1	1657	broad.mit.edu	37	5	118450179	118450179	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:118450179C>T	uc003ksd.2	+	6	688	c.507C>T	c.(505-507)TCC>TCT	p.S169S	DMXL1_uc010jcl.1_Silent_p.S169S|DMXL1_uc003ksc.1_Silent_p.S169S	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	169	WD 2.									ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		GAACTGCTTCCCAAGTTCATT	0.289													19	15					0	0	0.000175454	0	0
SNCAIP	9627	broad.mit.edu	37	5	121739511	121739511	+	Silent	SNP	G	A	A	rs149915358	byFrequency	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:121739511G>A	uc003ksw.1	+	3	287	c.81G>A	c.(79-81)ACG>ACA	p.T27T	SNCAIP_uc011cwl.1_5'UTR|SNCAIP_uc010jct.2_Silent_p.T27T|SNCAIP_uc003ksx.1_Silent_p.T74T|SNCAIP_uc003ksy.1_Missense_Mutation_p.R12Q|SNCAIP_uc003ksz.1_Missense_Mutation_p.R12Q|SNCAIP_uc010jcu.2_Missense_Mutation_p.R12Q|SNCAIP_uc011cwm.1_Missense_Mutation_p.R12Q|SNCAIP_uc003kta.1_Missense_Mutation_p.R10Q|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.R12Q|SNCAIP_uc010jcx.1_Silent_p.T27T	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	27					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CACTCAAGACGATCCCAGAAC	0.453													4	15					0	0	8.12818e-05	0	0
SIL1	64374	broad.mit.edu	37	5	138287560	138287560	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:138287560G>A	uc003ldm.2	-	7	798	c.781C>T	c.(781-783)CAG>TAG	p.Q261*	SIL1_uc003ldn.2_Nonsense_Mutation_p.Q260*|SIL1_uc003ldo.2_Nonsense_Mutation_p.Q261*|SIL1_uc003ldp.2_Nonsense_Mutation_p.Q261*|SIL1_uc003ldq.1_Nonsense_Mutation_p.Q54*	NM_022464	NP_071909	Q9H173	SIL1_HUMAN	SIL1 protein precursor	261					intracellular protein transport|protein folding|transmembrane transport	endoplasmic reticulum lumen	unfolded protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GCCTCCACCTGGACCTTGGGG	0.612									Marinesco-Sj_gren_syndrome				46	17					0	0	0.000680045	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431406	140431406	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:140431406C>T	uc003lik.1	+	1	428	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	117	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGTCCTTCCGGGCCGAGG	0.512													9	17					0	0	0.000274275	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563414	140563414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:140563414G>A	uc003liv.2	+	1	2435	c.1280G>A	c.(1279-1281)GGG>GAG	p.G427E	PCDHB16_uc010jfw.1_Missense_Mutation_p.G99E	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	427	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAGATATGGGGACTCCAAGG	0.468													16	38					0	0	0.000308642	0	0
PCDHB9	56127	broad.mit.edu	37	5	140569244	140569244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:140569244G>A	uc003liw.1	+	3	2353	c.2353G>A	c.(2353-2355)GAA>AAA	p.E785K	PCDHB10_uc003lix.2_5'Flank	NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	785	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGAAATAGAGGAAAATTCTAC	0.428													23	63					0	0	0.00047179	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393487	145393487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:145393487C>T	uc003lnt.2	+	5	1160	c.922C>T	c.(922-924)CTC>TTC	p.L308F	SH3RF2_uc011dbl.1_Missense_Mutation_p.L308F	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	308							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTTGAACACTCTCAACCGGAT	0.587													23	9					0	0	0.000375601	0	0
CAMK2A	815	broad.mit.edu	37	5	149624735	149624735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:149624735C>T	uc003lru.2	-	13	1188	c.973G>A	c.(973-975)GAT>AAT	p.D325N	CAMK2A_uc003lrs.2_Missense_Mutation_p.D36N|CAMK2A_uc003lrt.2_Missense_Mutation_p.D325N|CAMK2A_uc010jhe.2_Missense_Mutation_p.D305N	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	325					interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCACACCATCGCTCTTCTTG	0.617													31	15					0	0	0.00111076	0	0
ZNF300	91975	broad.mit.edu	37	5	150282706	150282706	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:150282706G>A	uc003lsy.1	-	3	279	c.12C>T	c.(10-12)TCC>TCT	p.S4S		NM_052860	NP_443092	Q96RE9	ZN300_HUMAN	zinc finger protein 300	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.131)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AACTCACCTGGGACTTCATCA	0.259													6	40					0	0	0.000157383	0	0
GLRA1	2741	broad.mit.edu	37	5	151234673	151234673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:151234673C>T	uc003lut.2	-	6	912	c.625G>A	c.(625-627)GGA>AGA	p.G209R	GLRA1_uc003lur.2_Missense_Mutation_p.G209R|GLRA1_uc003lus.2_Missense_Mutation_p.G126R	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	209	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AGAGTTAGTCCATCTGCTACC	0.502													41	12					0	0	0.000374591	0	0
EBF1	1879	broad.mit.edu	37	5	158524054	158524054	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:158524054G>A	uc010jip.2	-	2	521	c.219C>T	c.(217-219)GCC>GCT	p.A73A	EBF1_uc011ddw.1_5'Flank|EBF1_uc011ddx.1_Silent_p.A73A|EBF1_uc003lxl.3_Silent_p.A73A	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	73					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGTCGTAGAGGGCCAGGACGA	0.617			T	HMGA2	lipoma								15	4					0	0	0.000308642	0	0
MGAT4B	11282	broad.mit.edu	37	5	179228606	179228606	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr5:179228606G>A	uc003mks.2	-	3	741	c.372C>T	c.(370-372)GCC>GCT	p.A124A	MGAT4B_uc003mkp.2_5'Flank|MGAT4B_uc003mkq.2_5'UTR|MGAT4B_uc003mkr.2_Silent_p.A139A	NM_014275	NP_055090	Q9UQ53	MGT4B_HUMAN	alpha-1,3-mannosyl-glycoprotein	124	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding				0	all_cancers(89;0.000201)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0525)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGCTCTCCTTGGCCAGCAGGT	0.711													17	5					0	0	0.000566183	0	0
OR2B6	26212	broad.mit.edu	37	6	27925100	27925100	+	Missense_Mutation	SNP	C	T	T	rs139328462		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:27925100C>T	uc011dkx.1	+	1	82	c.82C>T	c.(82-84)CTT>TTT	p.L28F		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTTTCCACTCCTTGTGGTCTT	0.418													35	38					0	0	0.000814825	0	0
SCAND3	114821	broad.mit.edu	37	6	28543645	28543645	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:28543645G>A	uc003nlo.2	-	3	1455	c.837C>T	c.(835-837)ATC>ATT	p.I279I		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	279					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTGTACAAGGATAACATCAA	0.378													56	86					0	0	0.000781405	0	0
ZNF311	282890	broad.mit.edu	37	6	28963130	28963130	+	Missense_Mutation	SNP	G	C	C	rs71732072		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:28963130G>C	uc003nlu.2	-	7	2162	c.1649C>G	c.(1648-1650)ACT>AGT	p.T550S	ZNF311_uc011dlk.1_Missense_Mutation_p.T458S|ZNF311_uc003nlv.2_Missense_Mutation_p.T458S	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	550					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						CTTCTCTCCAGTGTGAATTCT	0.448													3	108					0	0	6.4e-05	0	0
OR12D3	81797	broad.mit.edu	37	6	29342555	29342555	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:29342555C>T	uc003nme.2	-	1	514	c.510G>A	c.(508-510)CAG>CAA	p.Q170Q		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						GATTGAGTTTCTGAGAGCCAC	0.468													34	24					0	0	0.000692331	0	0
OR10C1	442194	broad.mit.edu	37	6	29408418	29408418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:29408418C>T	uc011dlp.1	+	1	626	c.626C>T	c.(625-627)CCC>CTC	p.P209L	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATCCTCTGCCCCTTTGGCCTC	0.582													126	154					0	0	0.000781405	0	0
PPT2	9374	broad.mit.edu	37	6	32130664	32130665	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:32130664_32130665CC>AA	uc003nzx.2	+	9	1414_1415	c.846_847CC>AA	c.(844-849)TCCCAC>TCAAAC	p.H283N	PPT2_uc003nzw.2_Missense_Mutation_p.H289N|PPT2_uc011dpi.1_Intron|PPT2_uc003nzy.1_Intron|PPT2_uc003nzz.2_Missense_Mutation_p.H283N|PPT2_uc003oaa.2_Missense_Mutation_p.H283N|PPT2_uc010jtu.1_Intron|EGFL8_uc003oac.1_5'Flank|EGFL8_uc003oab.1_5'Flank	NM_005155	NP_005146	Q9UMR5	PPT2_HUMAN	palmitoyl-protein thioesterase 2 isoform a	283				H->A: Abolishes enzymatic activity.	protein modification process	lysosome	palmitoyl-(protein) hydrolase activity				0						CCGGTATCTCCCACACAGCCTG	0.554													15	803					0	0	6.4e-05	0	0
COL11A2	1302	broad.mit.edu	37	6	33148473	33148473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:33148473G>A	uc003ocx.1	-	11	1484	c.1256C>T	c.(1255-1257)CCA>CTA	p.P419L	COL11A2_uc010jul.1_5'Flank|COL11A2_uc003ocy.1_Missense_Mutation_p.P333L|COL11A2_uc003ocz.1_Missense_Mutation_p.P312L	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	419	Nonhelical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						AACTGGGCCTGGGTTCCCCTG	0.612													19	21					0	0	0.000132079	0	0
RING1	6015	broad.mit.edu	37	6	33178997	33178997	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:33178997A>G	uc003odk.2	+	5	712	c.518A>G	c.(517-519)GAA>GGA	p.E173G	RING1_uc011dqx.1_Missense_Mutation_p.E173G|RING1_uc003odl.2_Missense_Mutation_p.E144G	NM_002931	NP_002922	Q06587	RING1_HUMAN	ring finger protein 1	173	Necessary for transcriptional repression (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						AGTGGGGGGGAAGGAGAGCCC	0.632													4	312					0	0	0.00024832	0	0
IP6K3	117283	broad.mit.edu	37	6	33690601	33690602	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:33690601_33690602CC>AA	uc010jvf.2	-	7	1664_1665	c.1128_1129GG>TT	c.(1126-1131)AAGGGC>AATTGC	p.376_377KG>NC	IP6K3_uc003ofb.2_Missense_Mutation_p.376_377KG>NC	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	376_377					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						TTCCAGTAGCCCTTGTATGTGG	0.545													11	271					0	0	6.4e-05	0	0
PTK7	5754	broad.mit.edu	37	6	43109726	43109726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:43109726C>T	uc003oub.1	+	12	2024	c.1826C>T	c.(1825-1827)GCC>GTC	p.A609V	PTK7_uc003ouc.1_Missense_Mutation_p.A609V|PTK7_uc003oud.1_Missense_Mutation_p.A569V|PTK7_uc003oue.1_Missense_Mutation_p.A479V|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.A617V|PTK7_uc010jyj.1_Intron	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	609	Ig-like C2-type 7.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GGCCACACAGCCCTACTGCAG	0.602													45	28					0	0	0.000781405	0	0
CUL9	23113	broad.mit.edu	37	6	43153716	43153716	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:43153716C>T	uc003ouk.2	+	4	849	c.774C>T	c.(772-774)TCC>TCT	p.S258S	CUL9_uc003ouj.1_Silent_p.S258S|CUL9_uc003oul.2_Silent_p.S258S|CUL9_uc010jyk.2_5'UTR|CUL9_uc003oum.1_5'Flank	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	258					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						TGCTTTTCTCCTTGGTGAAGC	0.532													69	51					0	0	0.000781405	0	0
TMEM63B	55362	broad.mit.edu	37	6	44116047	44116048	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:44116047_44116048GG>TT	uc003owr.2	+	13	1110_1111	c.1046_1047GG>TT	c.(1045-1047)CGG>CTT	p.R349L	TMEM63B_uc003owq.1_Missense_Mutation_p.R349L|TMEM63B_uc003ows.2_Missense_Mutation_p.R252L|TMEM63B_uc010jyz.2_RNA	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	349						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			GACTACAAGCGGGAGAAGGAGA	0.55													8	231					0	0	6.4e-05	0	0
GPR115	221393	broad.mit.edu	37	6	47686167	47686167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:47686167C>T	uc003oza.1	+	9	2335	c.2077C>T	c.(2077-2079)CGT>TGT	p.R693C	GPR115_uc003oyz.1_Missense_Mutation_p.R750C|GPR115_uc003ozb.1_Missense_Mutation_p.R691C	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	693	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						ATTAATGAATCGTCAAGGATG	0.348													226	111					0	0	0.000781405	0	0
MUT	4594	broad.mit.edu	37	6	49416553	49416554	+	Silent	DNP	GG	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:49416553_49416554GG>TT	uc003ozg.3	-	7	1674_1675	c.1419_1420CC>AA	c.(1417-1422)GCCCGA>GCAAGA	p.473_474AR>AR		NM_000255	NP_000246	P22033	MUTA_HUMAN	methylmalonyl Coenzyme A mutase precursor	473_474					fatty acid beta-oxidation	mitochondrial matrix	cobalamin binding|metal ion binding|methylmalonyl-CoA mutase activity				0	Lung NSC(77;0.0376)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GCTTGTCTTCGGGCAGCACATT	0.342													7	98					0	0	6.4e-05	0	0
GCLC	2729	broad.mit.edu	37	6	53371823	53371823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:53371823C>T	uc003pbw.1	-	10	1473	c.1085G>A	c.(1084-1086)GGC>GAC	p.G362D	GCLC_uc003pbv.1_Missense_Mutation_p.G86D	NM_001498	NP_001489	P48506	GSH1_HUMAN	glutamate-cysteine ligase, catalytic subunit	362					anti-apoptosis|cell redox homeostasis|cysteine metabolic process|glutamate metabolic process|glutathione biosynthetic process|negative regulation of transcription, DNA-dependent|regulation of blood vessel size|response to heat|response to hormone stimulus|response to oxidative stress|xenobiotic metabolic process	cytosol	ADP binding|ATP binding|coenzyme binding|glutamate binding|glutamate-cysteine ligase activity|magnesium ion binding			ovary(1)|central_nervous_system(1)	2	Lung NSC(77;0.0137)				L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	ATGATCAATGCCTGCAAAAAG	0.443													21	25					0	0	0.000175454	0	0
C6orf142	90523	broad.mit.edu	37	6	54095550	54095550	+	Silent	SNP	T	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:54095550T>A	uc003pcg.3	+	11	1265	c.1152T>A	c.(1150-1152)CCT>CCA	p.P384P	C6orf142_uc003pch.3_Intron|C6orf142_uc011dxa.1_Silent_p.P919P	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	384						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CGCTCCATCCTTTATATCAGA	0.488													199	292					0	0	0.000781405	0	0
FAM83B	222584	broad.mit.edu	37	6	54805927	54805927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:54805927G>A	uc003pck.2	+	5	2274	c.2158G>A	c.(2158-2160)GAT>AAT	p.D720N		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	720										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CTTGGAGGAGGATGAGGAGGA	0.398													26	21					0	0	0.000184323	0	0
B3GAT2	135152	broad.mit.edu	37	6	71571422	71571422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:71571422C>T	uc003pfv.2	-	4	1572	c.916G>A	c.(916-918)GTT>ATT	p.V306I	SMAP1_uc003pfr.2_3'UTR|SMAP1_uc003pfs.2_3'UTR|SMAP1_uc010kao.2_3'UTR|SMAP1_uc010kap.2_3'UTR|B3GAT2_uc011dxz.1_RNA|B3GAT2_uc003pfw.2_Silent_p.R332R	NM_080742	NP_542780	Q9NPZ5	B3GA2_HUMAN	beta-1,3-glucuronyltransferase 2	306	Lumenal (Potential).				carbohydrate biosynthetic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						GCTAGATTAACCTTCTCTGTC	0.507													23	3					0	0	0.000586117	0	0
HTR1B	3351	broad.mit.edu	37	6	78172887	78172887	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:78172887C>T	uc003pil.1	-	1	234	c.234G>A	c.(232-234)CGG>CGA	p.R78R		NM_000863	NP_000854	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B	78	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity				0		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	TGTGCAGTTTCCGGGTCCGGT	0.567													80	4					0	0	0.000781405	0	0
ZNF292	23036	broad.mit.edu	37	6	87965184	87965185	+	Missense_Mutation	DNP	CC	TT	TT	rs79715650		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:87965184_87965185CC>TT	uc003plm.3	+	8	1878_1879	c.1837_1838CC>TT	c.(1837-1839)CCA>TTA	p.P613L		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	613					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		GGGAAGGCCTCCAAAGATCACA	0.361													14	0					0	0	6.4e-05	0	0
ASCC3	10973	broad.mit.edu	37	6	101090551	101090551	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:101090551G>A	uc003pqk.2	-	24	4136	c.3807C>T	c.(3805-3807)ATC>ATT	p.I1269I		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	1269	SEC63 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		ACACTGCTCGGATGTAGTATT	0.383													27	2					0	0	0.000227799	0	0
GPRC6A	222545	broad.mit.edu	37	6	117114283	117114283	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:117114283G>A	uc003pxj.1	-	6	1825	c.1803C>T	c.(1801-1803)TCC>TCT	p.S601S	GPRC6A_uc003pxk.1_Silent_p.S426S|GPRC6A_uc003pxl.1_Silent_p.S530S	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	601	Helical; Name=1; (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TTCCCAGTAGGGAGAGAATCA	0.438													5	0					0	0	0.000157383	0	0
ROS1	6098	broad.mit.edu	37	6	117710787	117710787	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:117710787G>A	uc003pxp.1	-	12	1684	c.1485C>T	c.(1483-1485)CCC>CCT	p.P495P	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	495	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CATCAGCAAAGGGGATGCGAG	0.418			T	GOPC|ROS1	glioblastoma|NSCLC								30	3					0	0	0.000491102	0	0
MAP7	9053	broad.mit.edu	37	6	136693711	136693711	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:136693711C>T	uc003qgz.2	-	8	1050	c.804G>A	c.(802-804)TCG>TCA	p.S268S	MAP7_uc011edf.1_Silent_p.S253S|MAP7_uc011edg.1_Silent_p.S298S|MAP7_uc010kgu.2_Silent_p.S290S|MAP7_uc011edh.1_Silent_p.S253S|MAP7_uc010kgv.2_Silent_p.S290S|MAP7_uc010kgs.2_Silent_p.S122S|MAP7_uc011edi.1_Silent_p.S122S|MAP7_uc010kgq.1_Silent_p.S174S|MAP7_uc003qha.1_Silent_p.S231S|MAP7_uc010kgr.2_Silent_p.S122S|MAP7_uc010kgt.2_Silent_p.S290S|MAP7_uc003qhb.2_RNA	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	268					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		GTCGATCCATCGAATTTCTAG	0.507													38	2					0	0	0.000509022	0	0
SLC35D3	340146	broad.mit.edu	37	6	137243837	137243837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr6:137243837C>T	uc003qhe.2	+	1	436	c.271C>T	c.(271-273)CTC>TTC	p.L91F		NM_001008783	NP_001008783	Q5M8T2	S35D3_HUMAN	solute carrier family 35, member D3	91					carbohydrate transport	integral to membrane				ovary(1)|central_nervous_system(1)	2	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000136)|OV - Ovarian serous cystadenocarcinoma(155;0.00365)		GCAGTCCAGCCTCACGCTCTG	0.701													5	1					0	0	3.59834e-05	0	0
TMEM184A	202915	broad.mit.edu	37	7	1586603	1586603	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:1586603G>A	uc003skv.3	-	9	1544	c.1227C>T	c.(1225-1227)CCC>CCT	p.P409P	TMEM184A_uc003skt.3_Silent_p.P388P|TMEM184A_uc003skw.3_Silent_p.P214P	NM_001097620	NP_001091089	Q6ZMB5	T184A_HUMAN	transmembrane protein 184A	409						integral to membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.88e-15)		GGTCCTCCGAGGGGATCAGCA	0.721													4	10					0	0	0.00024832	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22196451	22196451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:22196451C>T	uc003svg.2	-	16	1467	c.1154G>A	c.(1153-1155)GGA>GAA	p.G385E	RAPGEF5_uc011jyl.1_Missense_Mutation_p.G66E	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	235					nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						AGTCACAGTTCCTCTATGCTG	0.458													11	56					0	0	0.00010058	0	0
C7orf31	136895	broad.mit.edu	37	7	25175609	25175609	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:25175609G>A	uc003sxn.1	-	10	2316	c.1755C>T	c.(1753-1755)TCC>TCT	p.S585S	C7orf31_uc003sxm.1_Silent_p.S427S	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	585											0						AGAAATAATAGGAATTATGGC	0.373													40	83					0	0	0.000228196	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31146121	31146121	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:31146121G>A	uc003tca.1	+	16	1453	c.1230G>A	c.(1228-1230)GAG>GAA	p.E410E	ADCYAP1R1_uc003tcb.1_Silent_p.E389E|ADCYAP1R1_uc003tcc.1_Silent_p.E438E|ADCYAP1R1_uc003tcd.1_Silent_p.E438E|ADCYAP1R1_uc003tce.1_Silent_p.E437E|uc003tcg.2_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	410	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						TACAAGCGGAGATCAAGCGAA	0.612													26	23					0	0	0.000720815	0	0
ELMO1	9844	broad.mit.edu	37	7	36917633	36917633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:36917633C>T	uc003tfk.1	-	19	2111	c.1804G>A	c.(1804-1806)GAT>AAT	p.D602N	ELMO1_uc003tfi.1_Missense_Mutation_p.D122N|ELMO1_uc003tfj.1_Missense_Mutation_p.D122N|ELMO1_uc011kbb.1_RNA|ELMO1_uc011kbc.1_Missense_Mutation_p.D506N|ELMO1_uc010kxg.1_Missense_Mutation_p.D602N	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	602	PH.				actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TGCAAGGAATCGTGGGGCACT	0.473													33	24					0	0	0.00058488	0	0
ABCA13	154664	broad.mit.edu	37	7	48391836	48391836	+	Silent	SNP	G	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:48391836G>T	uc003toq.2	+	31	10465	c.10440G>T	c.(10438-10440)CTG>CTT	p.L3480L	ABCA13_uc010kys.1_Silent_p.L554L|ABCA13_uc003tos.1_Silent_p.L306L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3480					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTGTCAAACTGCCACCCCATG	0.433													67	39					1.52589e-26	1.47604e-25	0.000781405	1	0
EGFR	1956	broad.mit.edu	37	7	55231516	55231516	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:55231516G>A	uc003tqk.2	+	14	1968	c.1722G>A	c.(1720-1722)CGG>CGA	p.R574R	EGFR_uc003tqi.2_Silent_p.R574R|EGFR_uc003tqj.2_Silent_p.R574R|EGFR_uc010kzg.1_Silent_p.R529R|EGFR_uc011kco.1_Silent_p.R521R|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron|EGFR_uc003tqn.2_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	574	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GCACAGGACGGGTAAGAGCCC	0.577		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			48	91					0	0	0.000781405	0	0
ZNF680	340252	broad.mit.edu	37	7	63982563	63982563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:63982563G>A	uc003tta.2	-	4	742	c.569C>T	c.(568-570)TCA>TTA	p.S190L	ZNF680_uc010kzr.2_Missense_Mutation_p.S117L	NM_178558	NP_848653	Q8NEM1	ZN680_HUMAN	zinc finger protein 680 isoform 1	190	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.118)|all_lung(88;0.243)				CATGCAAAATGATTTGCCACA	0.308													35	1					0	0	0.000409698	0	0
PCLO	27445	broad.mit.edu	37	7	82580360	82580360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:82580360G>A	uc003uhx.2	-	6	9833	c.9544C>T	c.(9544-9546)CCC>TCC	p.P3182S	PCLO_uc003uhv.2_Missense_Mutation_p.P3182S|PCLO_uc010lec.2_Missense_Mutation_p.P147S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3113					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTTAAAGTGGGAACAGAGTCT	0.428													16	0					0	0	0.000958276	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87323230	87323230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:87323230C>T	uc003ujb.2	+	3	656	c.245C>T	c.(244-246)TCC>TTC	p.S82F	ABCB1_uc003uiz.1_Intron|ABCB1_uc003uja.1_Intron|ABCB1_uc010lei.1_Intron|RUNDC3B_uc011khd.1_Intron|RUNDC3B_uc011khe.1_Intron|RUNDC3B_uc003ujc.2_Intron|RUNDC3B_uc003ujd.2_Intron	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	82	RUN.									skin(1)	1	Esophageal squamous(14;0.00164)					AAAGAGATTTCCCAAAGTTGC	0.423													42	2					0	0	0.000680045	0	0
COL1A2	1278	broad.mit.edu	37	7	94049546	94049546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:94049546G>A	uc003ung.1	+	35	2552	c.2081G>A	c.(2080-2082)GGC>GAC	p.G694D	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	694			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CCATTATAGGGCGAAGCTGGG	0.408										HNSCC(75;0.22)			44	4					0	0	0.000374591	0	0
MUC17	140453	broad.mit.edu	37	7	100692154	100692154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:100692154G>A	uc003uxp.1	+	5	12617	c.12564G>A	c.(12562-12564)ATG>ATA	p.M4188I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4188	Extracellular (Potential).|SEA.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTGCCCAAATGGAACTGACTG	0.512													49	6					0	0	0.000781405	0	0
DOCK4	9732	broad.mit.edu	37	7	111428734	111428734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:111428734C>T	uc003vfx.2	-	32	3654	c.3385G>A	c.(3385-3387)GAG>AAG	p.E1129K	DOCK4_uc011kmm.1_Missense_Mutation_p.E27K|DOCK4_uc003vfw.2_Missense_Mutation_p.E570K|DOCK4_uc003vfy.2_Missense_Mutation_p.E1165K	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1129	DHR-2.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TTGAAGAGCTCGCGGTATGTT	0.448													6	0					0	0	0.000274275	0	0
GRM8	2918	broad.mit.edu	37	7	126173704	126173704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:126173704C>T	uc003vlr.2	-	8	2043	c.1732G>A	c.(1732-1734)GAG>AAG	p.E578K	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.E578K|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	578	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GAATGCCACTCCAATTTGATG	0.512										HNSCC(24;0.065)			21	1					0	0	0.000175454	0	0
GRM8	2918	broad.mit.edu	37	7	126173839	126173839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:126173839G>A	uc003vlr.2	-	8	1908	c.1597C>T	c.(1597-1599)CCT>TCT	p.P533S	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.P533S|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	533	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CAGCAGCAAGGGACCCCTTTC	0.552										HNSCC(24;0.065)			41	2					0	0	0.000319135	0	0
TSPAN33	340348	broad.mit.edu	37	7	128807314	128807314	+	Silent	SNP	C	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:128807314C>G	uc003vop.1	+	7	892	c.663C>G	c.(661-663)ACC>ACG	p.T221T	TSPAN33_uc003voq.1_Silent_p.T53T	NM_178562	NP_848657	Q86UF1	TSN33_HUMAN	tetraspanin 33	221	Extracellular (Potential).					integral to membrane				ovary(1)	1						TCATCTACACCAATGGCTGTA	0.483													4	180					0	0	0.00024832	0	0
AKR1D1	6718	broad.mit.edu	37	7	137773395	137773395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:137773395G>A	uc003vtz.2	+	2	211	c.142G>A	c.(142-144)GGG>AGG	p.G48R	AKR1D1_uc011kqb.1_Missense_Mutation_p.G48R|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Missense_Mutation_p.G48R|AKR1D1_uc011kqf.1_Missense_Mutation_p.G48R	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	48					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						TATTGACACAGGGTACCGACA	0.493													29	1					0	0	0.000227799	0	0
BRAF	673	broad.mit.edu	37	7	140453135	140453136	+	Missense_Mutation	DNP	CA	TT	TT	rs121913227		TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:140453135_140453136CA>TT	uc003vwc.3	-	15	1860_1861	c.1799_1800TG>AA	c.(1798-1800)GTG>GAA	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	ATCGAGATTTCACTGTAGCTAG	0.371	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				34	1					0	0	6.4e-05	0	0
CLEC5A	23601	broad.mit.edu	37	7	141635733	141635733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:141635733C>T	uc003vwv.1	-	5	423	c.226G>A	c.(226-228)GAA>AAA	p.E76K	CLEC5A_uc011krm.1_Missense_Mutation_p.E53K|CLEC5A_uc003vww.1_Missense_Mutation_p.E76K|CLEC5A_uc010lnq.1_Missense_Mutation_p.E53K|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	76	Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TGATAAAATTCCCAGTCTTTG	0.398													17	1					0	0	0.000566183	0	0
Unknown	0	broad.mit.edu	37	7	142499823	142499823	+	RNA	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:142499823C>T	uc003wbe.3	+	4		c.493C>T			uc003wbf.3_RNA|uc003wbh.3_Silent_p.I193I|uc003wbi.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T cell receptor V beta14-D-J, partial cds.																		CTGCCACCATCCTCTATGAGA	0.572													54	5					0	0	0.000781405	0	0
KCNH2	3757	broad.mit.edu	37	7	150648102	150648102	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:150648102G>A	uc003wic.2	-	8	2065	c.2052C>T	c.(2050-2052)ATC>ATT	p.I684I	KCNH2_uc003wib.2_Silent_p.I344I|KCNH2_uc011kux.1_Silent_p.I588I|KCNH2_uc003wid.2_Silent_p.I344I|KCNH2_uc003wie.2_Silent_p.I684I	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	684	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GGTGGAAGCGGATGAACTCCC	0.622													49	1					0	0	0.000781405	0	0
NOS3	4846	broad.mit.edu	37	7	150695478	150695478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:150695478G>A	uc003wif.2	+	6	912	c.616G>A	c.(616-618)GAA>AAA	p.E206K	NOS3_uc011kuy.1_5'UTR|NOS3_uc011kuz.1_Missense_Mutation_p.E206K|NOS3_uc011kva.1_Missense_Mutation_p.E206K|NOS3_uc011kvb.1_Missense_Mutation_p.E206K	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	206	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	GTCTGCACAGGAAATGTTCAC	0.617													24	0					0	0	0.00106085	0	0
CHPF2	54480	broad.mit.edu	37	7	150934799	150934799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr7:150934799G>A	uc003wjr.1	+	4	2864	c.1351G>A	c.(1351-1353)GAA>AAA	p.E451K	CHPF2_uc003wjq.1_Missense_Mutation_p.E443K|MIR671_hsa-mir-671|MI0003760_5'Flank	NM_019015	NP_061888	Q9P2E5	CHPF2_HUMAN	chondroitin polymerizing factor 2	451	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(1)	1						CCTGCTGTTGGAATGTGTGAC	0.647													64	3					0	0	0.000781405	0	0
CSMD1	64478	broad.mit.edu	37	8	2813184	2813184	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:2813184G>A	uc011kwk.1	-	64	10314	c.9924C>T	c.(9922-9924)TTC>TTT	p.F3308F	CSMD1_uc011kwj.1_Silent_p.F2637F|CSMD1_uc010lrg.2_Silent_p.F1199F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3308	Sushi 28.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCCCTGCGAGGAAAAAGCCTG	0.507													14	13					0	0	0.000308642	0	0
SLC7A2	6542	broad.mit.edu	37	8	17401205	17401205	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:17401205C>T	uc011kyc.1	+	2	526	c.357C>T	c.(355-357)CTC>CTT	p.L119L	SLC7A2_uc011kyd.1_Silent_p.L159L|SLC7A2_uc011kye.1_Silent_p.L159L|SLC7A2_uc011kyf.1_Silent_p.L119L	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	119	Helical; (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	GCTGGAATCTCATTTTATCGT	0.458													42	37					0	0	0.000781405	0	0
STC1	6781	broad.mit.edu	37	8	23702457	23702457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:23702457C>T	uc003xdw.1	-	4	854	c.570G>A	c.(568-570)ATG>ATA	p.M190I		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	190					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		AGAGGCTGGCCATGTTAGGCC	0.517													19	21					0	0	0.000958276	0	0
DPYSL2	1808	broad.mit.edu	37	8	26441409	26441409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:26441409C>T	uc003xfb.1	+	3	573	c.223C>T	c.(223-225)CGT>TGT	p.R75C	DPYSL2_uc003xfa.2_Missense_Mutation_p.R180C|DPYSL2_uc011lag.1_Missense_Mutation_p.R75C|DPYSL2_uc010luk.1_RNA|DPYSL2_uc011lah.1_Missense_Mutation_p.R39C	NM_001386	NP_001377	Q16555	DPYL2_HUMAN	dihydropyrimidinase-like 2	75					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	dihydropyrimidinase activity|protein binding			large_intestine(1)	1		all_cancers(63;0.121)|Ovarian(32;2.68e-05)|all_epithelial(46;0.116)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;3.33e-10)|Colorectal(74;0.183)		CGTCCACACTCGTTTCCAGAT	0.522													52	75					0	0	0.000781405	0	0
NRG1	3084	broad.mit.edu	37	8	32617893	32617893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:32617893G>A	uc003xiv.2	+	11	1754	c.1237G>A	c.(1237-1239)GAT>AAT	p.D413N	NRG1_uc011lbf.1_Missense_Mutation_p.D410N|NRG1_uc010lvo.2_Missense_Mutation_p.D410N|NRG1_uc003xiu.2_Missense_Mutation_p.D418N|NRG1_uc003xiw.2_Missense_Mutation_p.D410N|NRG1_uc003xit.2_Missense_Mutation_p.D413N|NRG1_uc010lvr.2_Missense_Mutation_p.D155N|NRG1_uc010lvs.2_Missense_Mutation_p.D155N|NRG1_uc010lvp.2_Missense_Mutation_p.D367N|NRG1_uc010lvq.2_Missense_Mutation_p.D350N|NRG1_uc011lbg.1_Missense_Mutation_p.D259N|NRG1_uc011lbh.1_Missense_Mutation_p.D256N|NRG1_uc003xja.2_Missense_Mutation_p.D224N	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	413	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		AGAAACCCCTGATTCCTACCG	0.542													39	34					0	0	0.00111076	0	0
ADAM2	2515	broad.mit.edu	37	8	39604026	39604026	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:39604026C>T	uc003xnj.2	-	19	2214	c.2139G>A	c.(2137-2139)AGG>AGA	p.R713R	ADAM2_uc003xnk.2_Silent_p.R694R|ADAM2_uc011lck.1_Silent_p.R650R|ADAM2_uc003xnl.2_Silent_p.R557R	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	713	Cytoplasmic (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TCCATTTTTTCCTTTGGAAAT	0.284													31	45					0	0	0.000953801	0	0
ANK1	286	broad.mit.edu	37	8	41548013	41548013	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:41548013G>A	uc003xok.2	-	32	4047	c.3963C>T	c.(3961-3963)AAC>AAT	p.N1321N	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.N637N|ANK1_uc003xoi.2_Silent_p.N1321N|ANK1_uc003xoj.2_Silent_p.N1321N|ANK1_uc003xol.2_Silent_p.N1321N|ANK1_uc003xom.2_Silent_p.N1362N	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1321					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TGGCCAGACGGTTCTCCCGAA	0.567													20	29					0	0	0.000175454	0	0
IKBKB	3551	broad.mit.edu	37	8	42147757	42147757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:42147757C>T	uc003xow.1	+	4	461	c.284C>T	c.(283-285)GCC>GTC	p.A95V	IKBKB_uc003xov.2_Missense_Mutation_p.A95V|IKBKB_uc010lxh.1_Intron|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_Intron|IKBKB_uc003xox.1_5'UTR|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Missense_Mutation_p.A93V|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_Missense_Mutation_p.A36V	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	95	Protein kinase.				anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	CCCCTGCTGGCCATGGAGTAC	0.632													11	10					0	0	0.000978159	0	0
PXDNL	137902	broad.mit.edu	37	8	52384816	52384816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:52384816C>T	uc003xqu.3	-	8	844	c.743G>A	c.(742-744)GGA>GAA	p.G248E		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	248	Ig-like C2-type 1.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GACGGTATTTCCTGATGGTAC	0.433													48	129					0	0	0.000781405	0	0
NSMAF	8439	broad.mit.edu	37	8	59515881	59515881	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:59515881G>A	uc003xtt.2	-	13	1147	c.933C>T	c.(931-933)TCC>TCT	p.S311S	NSMAF_uc011lee.1_Silent_p.S342S|NSMAF_uc003xtu.2_Silent_p.S311S	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	311	BEACH.				ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				ACTGATAGTTGGAAAGGTGTC	0.547													34	87					0	0	0.000409698	0	0
NSMAF	8439	broad.mit.edu	37	8	59515917	59515917	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:59515917C>T	uc003xtt.2	-	13	1111	c.897G>A	c.(895-897)GAG>GAA	p.E299E	NSMAF_uc011lee.1_Silent_p.E330E|NSMAF_uc003xtu.2_Silent_p.E299E	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	299	BEACH.				ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				GCATGTAGCTCTCAGCAGTGT	0.557													38	25					0	0	0.000270559	0	0
PREX2	80243	broad.mit.edu	37	8	69000017	69000017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:69000017C>T	uc003xxv.1	+	19	2113	c.2086C>T	c.(2086-2088)CCT>TCT	p.P696S	PREX2_uc003xxu.1_Missense_Mutation_p.P696S|PREX2_uc011lez.1_Missense_Mutation_p.P631S	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	696	PDZ 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GGGATTTGGCCCTTCTGTTGT	0.458													63	34					0	0	0.000781405	0	0
PREX2	80243	broad.mit.edu	37	8	69028124	69028124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:69028124G>A	uc003xxv.1	+	26	3310	c.3283G>A	c.(3283-3285)GAA>AAA	p.E1095K		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1095					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGATGAACAGGAAGATTCTGG	0.393													30	119					0	0	0.000814825	0	0
KCNB2	9312	broad.mit.edu	37	8	73849483	73849483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:73849483G>A	uc003xzb.2	+	3	2481	c.1893G>A	c.(1891-1893)ATG>ATA	p.M631I		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	631	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ACTTGCAGATGAAGTTCCCAA	0.597													43	125					0	0	0.000781405	0	0
KCNB2	9312	broad.mit.edu	37	8	73849485	73849485	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:73849485A>T	uc003xzb.2	+	3	2483	c.1895A>T	c.(1894-1896)AAG>ATG	p.K632M		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	632	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TTGCAGATGAAGTTCCCAACC	0.602													40	127					0	0	0.000680045	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87162442	87162442	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:87162442C>T	uc003ydp.1	+	6	810	c.741C>T	c.(739-741)CTC>CTT	p.L247L		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	247					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						TCGGCAAACTCTATCCTGAGG	0.488													45	19					0	0	0.000781405	0	0
OSGIN2	734	broad.mit.edu	37	8	90937444	90937444	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:90937444A>G	uc003yeg.2	+	6	1548	c.1202A>G	c.(1201-1203)AAG>AGG	p.K401R	OSGIN2_uc003yeh.2_Missense_Mutation_p.K445R	NM_004337	NP_004328	Q9Y236	OSGI2_HUMAN	oxidative stress induced growth inhibitor family	401					germ cell development|meiosis						0			BRCA - Breast invasive adenocarcinoma(11;0.0344)			TCTGGATTGAAGAAAATATTT	0.408													75	38					0	0	0.000781405	0	0
DPY19L4	286148	broad.mit.edu	37	8	95800231	95800232	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:95800231_95800232CC>AA	uc003ygx.2	+	18	2082_2083	c.1958_1959CC>AA	c.(1957-1959)CCC>CAA	p.P653Q		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	653						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					GAGGTGGGACCCATGAGAGGCT	0.317													13	628					0	0	6.4e-05	0	0
VPS13B	157680	broad.mit.edu	37	8	100168820	100168821	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:100168820_100168821GG>AA	uc003yiv.2	+	15	2168_2169	c.2057_2058GG>AA	c.(2056-2058)CGG>CAA	p.R686Q	VPS13B_uc003yiw.2_Missense_Mutation_p.R686Q|VPS13B_uc003yit.2_Missense_Mutation_p.R686Q|VPS13B_uc003yiu.1_Missense_Mutation_p.R686Q|VPS13B_uc003yix.1_Missense_Mutation_p.R157Q	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	686					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CAGTCTCTTCGGCCTTTGCCAT	0.391													47	134					0	0	6.4e-05	0	0
RRM2B	50484	broad.mit.edu	37	8	103236335	103236336	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:103236335_103236336GG>TT	uc003ykn.2	-	5	732_733	c.488_489CC>AA	c.(487-489)CCC>CAA	p.P163Q	RRM2B_uc003yko.2_RNA|RRM2B_uc010mbv.1_Missense_Mutation_p.P111Q|RRM2B_uc010mbw.1_Intron|RRM2B_uc010mbx.1_Intron|RRM2B_uc010mby.1_Intron	NM_015713	NP_056528	Q7LG56	RIR2B_HUMAN	ribonucleotide reductase M2 B (TP53 inducible)	163					deoxyribonucleoside diphosphate metabolic process|DNA repair|nucleobase, nucleoside and nucleotide interconversion	nucleoplasm	ribonucleoside-diphosphate reductase activity|transition metal ion binding			ovary(2)	2	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000728)			TCTTAACATAGGGCATGGTTTC	0.287								Direct_reversal_of_damage|Modulation_of_nucleotide_pools					13	397					0	0	6.4e-05	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110406643	110406643	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:110406643G>A	uc003yne.2	+	10	845	c.741_splice	c.e10-1	p.R247_splice		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor						immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTTTTAACAGGAGTTTTCCA	0.259										HNSCC(38;0.096)			3	5					0	0	0.00024832	0	0
COL14A1	7373	broad.mit.edu	37	8	121326192	121326192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:121326192G>A	uc003yox.2	+	38	4742	c.4477G>A	c.(4477-4479)GAA>AAA	p.E1493K	COL14A1_uc003yoz.2_Missense_Mutation_p.E458K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1493	Triple-helical region 1 (COL2).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CCCTCGGGGTGAAATTGGTCT	0.483													51	146					0	0	0.000781405	0	0
FER1L6	654463	broad.mit.edu	37	8	124989728	124989729	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:124989728_124989729CC>TT	uc003yqw.2	+	10	1148_1149	c.942_943CC>TT	c.(940-945)TTCCCT>TTTTCT	p.P315S		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	315	C2 2.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGGAAATGTTCCCTCCCTTGTG	0.5													80	49					0	0	6.4e-05	0	0
MTSS1	9788	broad.mit.edu	37	8	125597365	125597365	+	Silent	SNP	G	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:125597365G>T	uc003yrk.2	-	6	957	c.423C>A	c.(421-423)TCC>TCA	p.S141S	MTSS1_uc003yrj.2_Silent_p.S141S|MTSS1_uc003yrl.2_Silent_p.S141S	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	141	IMD.|Potential.				actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GCGTATCCGAGGACTTCTTTT	0.358													60	311					1.88225e-35	1.82354e-34	0.000781405	1	0
ADCY8	114	broad.mit.edu	37	8	132051705	132051705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:132051705G>A	uc003ytd.3	-	1	1131	c.875C>T	c.(874-876)GCC>GTC	p.A292V	ADCY8_uc010mds.2_Missense_Mutation_p.A292V	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	292	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GGCCAGGATGGCCCAGGTGAG	0.652										HNSCC(32;0.087)			73	21					0	0	0.000781405	0	0
FAM135B	51059	broad.mit.edu	37	8	139155319	139155319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:139155319C>T	uc003yuy.2	-	16	3745	c.3574G>A	c.(3574-3576)GAT>AAT	p.D1192N	FAM135B_uc003yux.2_Missense_Mutation_p.D1093N|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.D754N|FAM135B_uc003yvb.2_3'UTR	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1192										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AATAACCGATCCGTCATAGTA	0.458										HNSCC(54;0.14)			59	18					0	0	0.000781405	0	0
EPPK1	83481	broad.mit.edu	37	8	144945045	144945045	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:144945045G>A	uc003zaa.1	-	1	2390	c.2377C>T	c.(2377-2379)CTG>TTG	p.L793L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	793						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGGAGGTACAGGCCCGTCTCG	0.627													53	15					0	0	0.000781405	0	0
GLIS3	169792	broad.mit.edu	37	9	3937183	3937183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:3937183C>T	uc003zhw.1	-	4	1446	c.1252G>A	c.(1252-1254)GGT>AGT	p.G418S	GLIS3_uc003zhx.1_Missense_Mutation_p.G573S|GLIS3_uc010mhf.1_5'UTR|GLIS3_uc003zhv.1_RNA|GLIS3_uc003zhy.1_Missense_Mutation_p.G351S|GLIS3_uc003zhz.1_Missense_Mutation_p.G351S	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	418	C2H2-type 3.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		TTCTCGCAACCTTCAAACTGC	0.438													13	14					0	0	0.000219431	0	0
PPAPDC2	403313	broad.mit.edu	37	9	4662890	4662890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:4662890C>T	uc003zin.2	+	1	593	c.515C>T	c.(514-516)GCC>GTC	p.A172V	C9orf68_uc003zik.2_Intron|C9orf68_uc003zil.2_Intron|C9orf68_uc010mhj.2_Intron|C9orf68_uc011lly.1_Intron|C9orf68_uc011llz.1_Intron|C9orf68_uc003zim.2_Intron	NM_203453	NP_982278	Q8IY26	PPAC2_HUMAN	phosphatidic acid phosphatase type 2 domain	172	Helical; (Potential).					integral to membrane	hydrolase activity				0	all_hematologic(13;0.137)	Breast(48;0.238)		GBM - Glioblastoma multiforme(50;0.026)		CTGCTCTTCGCCCTGCTGTTG	0.652													9	9					0	0	0.000442599	0	0
CA9	768	broad.mit.edu	37	9	35674098	35674098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:35674098C>T	uc003zxo.3	+	1	184	c.142C>T	c.(142-144)CCC>TCC	p.P48S	C9orf100_uc003zxl.2_RNA|CA9_uc003zxn.1_RNA|CA9_uc003zxp.3_Missense_Mutation_p.P48S	NM_001216	NP_001207	Q16790	CAH9_HUMAN	carbonic anhydrase IX precursor	48	Extracellular.|Proteoglycan-like (PG).				one-carbon metabolic process	integral to membrane|microvillus membrane|nucleolus	carbonate dehydratase activity|zinc ion binding			ovary(4)|skin(1)	5	all_epithelial(49;0.217)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GGAGGATTCCCCCTTGGGAGG	0.632													8	7					0	0	0.000274275	0	0
PAX5	5079	broad.mit.edu	37	9	36882068	36882068	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:36882068G>A	uc003zzo.1	-	8	1393	c.945C>T	c.(943-945)TAC>TAT	p.Y315Y	PAX5_uc011lpt.1_Silent_p.Y111Y|PAX5_uc011lpu.1_Intron|PAX5_uc011lpv.1_Intron|PAX5_uc011lpw.1_Intron|PAX5_uc011lpx.1_Intron|PAX5_uc011lpy.1_Intron|PAX5_uc010mls.1_Intron|PAX5_uc011lpz.1_Silent_p.Y272Y|PAX5_uc011lqa.1_Silent_p.Y207Y|PAX5_uc010mlq.1_RNA|PAX5_uc011lqb.1_RNA|PAX5_uc010mlo.1_Intron|PAX5_uc010mlp.1_Silent_p.Y315Y|PAX5_uc011lqc.1_Silent_p.Y272Y|PAX5_uc010mlr.1_Intron	NM_016734	NP_057953	Q02548	PAX5_HUMAN	paired box 5	315					cell differentiation|humoral immune response|nervous system development|organ morphogenesis|spermatogenesis|transcription from RNA polymerase II promoter	nucleus	DNA binding	p.?(22)	PAX5/JAK2(18)	haematopoietic_and_lymphoid_tissue(142)|lung(3)|central_nervous_system(2)	147		all_cancers(2;3.46e-10)|Acute lymphoblastic leukemia(2;7.09e-56)|all_hematologic(2;6.65e-44)		GBM - Glioblastoma multiforme(29;0.0108)		CGTGTGGAGGGTACCCGGGGA	0.632			T|Mis|D|F|S	IGH@|ETV6|PML|FOXP1|ZNF521|ELN	NHL|ALL|B-ALL								6	18					0	0	0.000274275	0	0
FAM108B1	51104	broad.mit.edu	37	9	74481741	74481741	+	Silent	SNP	A	G	G			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:74481741A>G	uc004aim.1	-	4	1431	c.829T>C	c.(829-831)TTG>CTG	p.L277L	FAM108B1_uc004ail.2_Silent_p.L277L	NM_001025780	NP_001020951	Q5VST6	F108B_HUMAN	family with sequence similarity 108, member B1	277						extracellular region	hydrolase activity				0						AACTGTTTCAACCTTTCAAGA	0.408													10	12					0	0	0.00010058	0	0
Unknown	0	broad.mit.edu	37	9	78968949	78968949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:78968949G>A	uc004akc.1	+	9	1463	c.1243G>A	c.(1243-1245)GGA>AGA	p.G415R						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		CTCTTAACAGGGAGAGAAGTT	0.483													5	5					0	0	3.59834e-05	0	0
TLE4	7091	broad.mit.edu	37	9	82242321	82242321	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:82242321G>A	uc004ald.2	+	6	1176	c.327G>A	c.(325-327)CGG>CGA	p.R109R	TLE4_uc004alc.2_Silent_p.R116R|TLE4_uc010mpr.2_5'UTR|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Intron|TLE4_uc010mps.2_Silent_p.R109R|TLE4_uc004alf.2_Silent_p.R54R	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						CTGTGGAACGGGCCAAGCAGG	0.453													16	33					0	0	0.000175454	0	0
RASEF	158158	broad.mit.edu	37	9	85619421	85619421	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:85619421G>A	uc004amo.1	-	9	1455	c.1194C>T	c.(1192-1194)GGC>GGT	p.G398G		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	398					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						ACCTGTCATAGCCTAGAGGTT	0.338													9	13					0	0	0.000978159	0	0
C9orf79	286234	broad.mit.edu	37	9	90501390	90501390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:90501390G>A	uc004app.3	+	4	2023	c.1988G>A	c.(1987-1989)AGG>AAG	p.R663K	C9orf79_uc004apo.1_Missense_Mutation_p.R475K	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	663						integral to membrane				ovary(3)	3						TTCCCAGGGAGGCCCCAGAGT	0.612													6	16					0	0	3.59834e-05	0	0
ANKRD19	138649	broad.mit.edu	37	9	95599991	95599991	+	RNA	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:95599991G>A	uc004ass.2	+	9		c.2075G>A			ANKRD19_uc004asr.3_RNA	NR_026868				Homo sapiens cDNA FLJ36178 fis, clone TESTI2026534.												0						CAGGGAGGAGGAATCGGCGGA	0.428													16	8					0	0	0.000308642	0	0
INVS	27130	broad.mit.edu	37	9	103002451	103002451	+	Missense_Mutation	SNP	C	T	T	rs2491097	byFrequency	TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:103002451C>T	uc004bap.1	+	6	937	c.725C>T	c.(724-726)TCA>TTA	p.S242L	INVS_uc010mta.1_Missense_Mutation_p.S146L|INVS_uc011lve.1_Missense_Mutation_p.S146L|INVS_uc004bao.1_Missense_Mutation_p.S242L|INVS_uc004baq.1_Missense_Mutation_p.S146L|INVS_uc004bar.1_Missense_Mutation_p.S146L|INVS_uc010mtb.1_5'UTR	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	242	ANK 7.				negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				GTCTTGACCTCATATGAAAGC	0.438													32	21					0	0	0.00058488	0	0
CYLC2	1539	broad.mit.edu	37	9	105767487	105767487	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:105767487G>C	uc004bbs.2	+	5	644	c.574G>C	c.(574-576)GAT>CAT	p.D192H		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	192	3 X approximate tandem repeats.|31 X 3 AA repeats of K-K-X.|2.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				taacaaaaaagataaaaagga	0.164													9	20					0	0	0.000442599	0	0
KIAA1958	158405	broad.mit.edu	37	9	115422340	115422340	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:115422340C>T	uc004bgf.1	+	4	2317	c.2142C>T	c.(2140-2142)TGC>TGT	p.C714C	KIAA1958_uc011lwx.1_Silent_p.C742C	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	714										skin(1)	1						CCCACAGCTGCTGCCAGTGAG	0.617													24	10					0	0	0.000586117	0	0
COL27A1	85301	broad.mit.edu	37	9	116956705	116956705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:116956705C>T	uc011lxl.1	+	6	2038	c.2038C>T	c.(2038-2040)CTC>TTC	p.L680F	COL27A1_uc004bii.2_Intron|COL27A1_uc010mvd.1_Intron	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	680	Pro-rich.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GGACCCAGGGCTCTCACCAGG	0.517													25	97					0	0	0.000279167	0	0
RC3H2	54542	broad.mit.edu	37	9	125621031	125621031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:125621031C>T	uc010mwc.1	-	12	2441	c.2200G>A	c.(2200-2202)GAA>AAA	p.E734K	RC3H2_uc004bnc.2_RNA|RC3H2_uc004bnd.1_Missense_Mutation_p.E734K|RC3H2_uc004bne.3_Missense_Mutation_p.E734K	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2	734						cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						TTATATCTTTCCCGCAAAGAT	0.443													38	30					0	0	0.000953801	0	0
POMT1	10585	broad.mit.edu	37	9	134390882	134390882	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:134390882C>T	uc004cav.2	+	13	1513	c.1311C>T	c.(1309-1311)TCC>TCT	p.S437S	POMT1_uc004cax.2_Silent_p.S415S|POMT1_uc011mcj.1_Silent_p.S193S|POMT1_uc004cau.2_Silent_p.S415S|POMT1_uc004caw.2_Silent_p.S361S|POMT1_uc011mck.1_Silent_p.S298S|POMT1_uc011mcl.1_Silent_p.S263S|POMT1_uc011mcm.1_Silent_p.S385S|POMT1_uc011mcn.1_Silent_p.S140S	NM_007171	NP_009102	Q9Y6A1	POMT1_HUMAN	protein-O-mannosyltransferase 1 isoform a	437	MIR 2.				multicellular organismal development|protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.65e-05)|Epithelial(140;0.000259)		ATAACATCTCCATGCCCGCCC	0.532													46	31					0	0	0.000680045	0	0
DBH	1621	broad.mit.edu	37	9	136501648	136501648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:136501648C>T	uc004cel.2	+	1	164	c.155C>T	c.(154-156)CCC>CTC	p.P52L		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	52	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	TATCACATCCCCCTGGACCCG	0.642													11	7					0	0	0.000219431	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071108	141071108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr9:141071108C>T	uc004com.2	+	4	772	c.511C>T	c.(511-513)CCA>TCA	p.P171S	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						CCTGCGCTTCCCAGGCCAGCT	0.592													5	30					0	0	0.000157383	0	0
ASMTL	8623	broad.mit.edu	37	X	1546780	1546780	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:1546780G>A	uc004cpx.1	-	7	855	c.744C>T	c.(742-744)CCC>CCT	p.P248P	ASMTL_uc011mhe.1_Silent_p.P172P|ASMTL_uc004cpy.1_Silent_p.P232P|ASMTL_uc011mhf.1_Silent_p.P190P	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	248					melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCCTCTGAGTGGGCTCCGAGC	0.706													45	46					0	0	0.000781405	0	0
MXRA5	25878	broad.mit.edu	37	X	3229292	3229292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:3229292C>T	uc004crg.3	-	7	7109	c.6952G>A	c.(6952-6954)GAG>AAG	p.E2318K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2318	Ig-like C2-type 7.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCTCCTTCCTCCCTCATCCCC	0.542													63	1					0	0	0.000781405	0	0
CLCN4	1183	broad.mit.edu	37	X	10182112	10182112	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:10182112C>T	uc004csy.3	+	11	2398	c.1968C>T	c.(1966-1968)CTC>CTT	p.L656L	CLCN4_uc011mid.1_Silent_p.L562L	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	656	CBS 1.|Cytoplasmic (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						AACTGATTCTCGCAATAAGTG	0.498													18	0					0	0	0.000958276	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766554	27766554	+	Silent	SNP	T	C	C			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:27766554T>C	uc011mjy.1	+	1	1629	c.1542T>C	c.(1540-1542)GGT>GGC	p.G514G		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						GCAGAGAAGGTACAATAAACT	0.498													8	0					0	0	0.000274275	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766574	27766574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:27766574C>T	uc011mjy.1	+	1	1649	c.1562C>T	c.(1561-1563)CCC>CTC	p.P521L		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						TGTCTTGAACCCCACCCTTAC	0.493													11	0					0	0	0.000978159	0	0
SHROOM4	57477	broad.mit.edu	37	X	50378446	50378446	+	Silent	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:50378446C>T	uc004dpe.2	-	4	653	c.627G>A	c.(625-627)GAG>GAA	p.E209E	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Silent_p.E93E	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	209					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					AGGCTGGCTCCTCTGGCCTGA	0.587													18	1					0	0	0.000566183	0	0
FAM120C	54954	broad.mit.edu	37	X	54162931	54162931	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:54162931G>A	uc004dsz.3	-	5	1334	c.1251C>T	c.(1249-1251)TCC>TCT	p.S417S	FAM120C_uc011moh.1_Silent_p.S417S	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	417										ovary(1)|central_nervous_system(1)	2						TACCTAGAAAGGAGGGACCCA	0.478													55	0					0	0	0.000781405	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913451	77913451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:77913451G>A	uc004edc.1	-	2	763	c.467C>T	c.(466-468)TCA>TTA	p.S156L		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	156	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						CTGGGGTTCTGAATTCTTGGG	0.557													14	1					0	0	0.000422831	0	0
Unknown	0	broad.mit.edu	37	X	100143013	100143013	+	RNA	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:100143013G>A	uc010nnf.2	-	1		c.605C>T			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		TCTTTGGCTGGAAGAAGCACT	0.294													17	2					0	0	0.000229342	0	0
NXF3	56000	broad.mit.edu	37	X	102334770	102334770	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:102334770G>A	uc004eju.2	-	13	1152	c.1081C>T	c.(1081-1083)CGA>TGA	p.R361*	NXF3_uc010noi.1_Nonsense_Mutation_p.R211*	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	361	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						AGACCCTGTCGATCTCCAGAG	0.522													51	0					0	0	0.000781405	0	0
H2BFXP	767811	broad.mit.edu	37	X	103316381	103316381	+	RNA	SNP	T	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:103316381T>A	uc004elt.1	-	3		c.499A>T				NR_003238				Homo sapiens X-linked mRNA sequence.												0						CACTAGGGCATGAGCTGTTTC	0.458													9	11					0	0	0.000978159	0	0
TEX13A	56157	broad.mit.edu	37	X	104464352	104464352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:104464352C>T	uc004ema.2	-	3	638	c.526G>A	c.(526-528)GAG>AAG	p.E176K	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.E176K	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	176						intracellular	zinc ion binding			ovary(2)	2						TCTTCTTCCTCCTCAGCTGCT	0.637													20	3					0	0	0.000720815	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011105	105011105	+	Silent	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:105011105G>A	uc004elz.1	+	11	2268	c.1512G>A	c.(1510-1512)GTG>GTA	p.V504V		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	504	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						AAATCAAAGTGATTTTGATTG	0.413													23	1					0	0	0.00047179	0	0
CHRDL1	91851	broad.mit.edu	37	X	109964648	109964648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:109964648G>A	uc004eou.3	-	5	761	c.412C>T	c.(412-414)CGG>TGG	p.R138W	CHRDL1_uc004eov.2_Missense_Mutation_p.R132W|CHRDL1_uc004eow.2_Missense_Mutation_p.R137W|CHRDL1_uc010nps.2_Missense_Mutation_p.R137W|CHRDL1_uc004eot.2_Intron|CHRDL1_uc011mss.1_Intron|CHRDL1_uc004eox.3_Missense_Mutation_p.R131W	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	131	VWFC 2.				BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						TTGGGTTGCCGATTCTGAAAG	0.483													129	4					0	0	0.000781405	0	0
F9	2158	broad.mit.edu	37	X	138630641	138630641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:138630641G>A	uc004fas.1	+	5	540	c.511G>A	c.(511-513)GAA>AAA	p.E171K	F9_uc004fat.1_Missense_Mutation_p.E133K	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	171	EGF-like 2.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	GAAGTCCTGTGAACCAGCAGG	0.358													29	2					0	0	0.000227799	0	0
MAGEC3	139081	broad.mit.edu	37	X	140985120	140985120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:140985120G>A	uc011mwp.1	+	7	1576	c.1576G>A	c.(1576-1578)GAA>AAA	p.E526K	MAGEC3_uc004fbs.2_Missense_Mutation_p.E228K|MAGEC3_uc010nsj.2_Missense_Mutation_p.E228K	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	526	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTATTTCTTTGAAGACACATT	0.438													114	4					0	0	0.000781405	0	0
MIR506	574511	broad.mit.edu	37	X	146312323	146312323	+	RNA	SNP	G	A	A			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:146312323G>A	hsa-mir-506|MI0003193	-			c.39G>A																				0						ACACCTTCCTGAATAAGGCAC	0.423													20	2					0	0	0.000295444	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900044	151900044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:151900044C>T	uc010ntp.2	-	3	1111	c.757G>A	c.(757-759)GAA>AAA	p.E253K	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.E253K	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	253	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGGTAGTTTTCCTGCACCAAA	0.557													73	2					0	0	0.000781405	0	0
F8	2157	broad.mit.edu	37	X	154227796	154227797	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:154227796_154227797CC>TT	uc004fmt.2	-	2	393_394	c.222_223GG>AA	c.(220-225)ACGGAT>ACAAAT	p.D75N	F8_uc011mzx.1_Missense_Mutation_p.D40N	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	75	Plastocyanin-like 1.|F5/8 type A 1.		D -> E (in HEMA; moderate).|D -> Y (in HEMA; moderate-severe).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	AAAAGGTGATCCGTGAATTCTA	0.386													68	0					0	0	6.4e-05	0	0
SPRY3	10251	broad.mit.edu	37	X	155004021	155004021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chrX:155004021C>T	uc004fnq.1	+	2	942	c.488C>T	c.(487-489)CCT>CTT	p.P163L	SPRY3_uc010nvl.1_Intron	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	163	SPR.|Cys-rich.				multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GCAGCTCGCCCTCTCCCCTCC	0.592													54	6					0	0	0.000781405	0	0
INADL	10207	broad.mit.edu	37	1	62235086	62235088	+	In_Frame_Del	DEL	AGC	-	-			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:62235086_62235088delAGC	uc001dab.2	+	5	630_632	c.516_518delAGC	c.(514-519)GTAGCA>GTA	p.A173del	INADL_uc009waf.1_In_Frame_Del_p.A173del|INADL_uc001daa.2_In_Frame_Del_p.A173del|INADL_uc001dad.3_5'Flank	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	173	PDZ 1.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CAGGGAGTGTAGCAGACAGGTGA	0.399													23	115	---	---	---	---					
GPR88	54112	broad.mit.edu	37	1	101004847	101004847	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:101004847delG	uc001dth.2	+	2	729	c.325delG	c.(325-327)GGGfs	p.G109fs		NM_022049	NP_071332	Q9GZN0	GPR88_HUMAN	G-protein coupled receptor 88	109	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_epithelial(167;1.19e-05)|all_lung(203;0.00159)|Lung NSC(277;0.00171)		Epithelial(280;0.0372)|all cancers(265;0.0558)|COAD - Colon adenocarcinoma(174;0.141)|Colorectal(144;0.156)|Lung(183;0.189)		GGACGGCGCTGGGGGCAGCTA	0.726													2	4	---	---	---	---					
SLC45A3	85414	broad.mit.edu	37	1	205633709	205633713	+	Frame_Shift_Del	DEL	AGGTT	-	-			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr1:205633709_205633713delAGGTT	uc001hda.1	-	2	411_415	c.72_76delAACCT	c.(70-78)CTAACCTTTfs	p.L24fs	SLC45A3_uc010prn.1_5'Flank|SLC45A3_uc010pro.1_5'Flank|SLC45A3_uc010prp.1_RNA|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	24_26	Helical; Name=1; (Potential).				transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			TCCAGGCCAAAGGTTAGCAGGTTGA	0.629			T	ETV1|ETV5|ELK4|ERG	prostate 								61	126	---	---	---	---					
GRB2	2885	broad.mit.edu	37	17	73389691	73389691	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr17:73389691delA	uc002jnx.3	-	2	376	c.19delT	c.(19-21)TATfs	p.Y7fs	GRB2_uc002jny.3_Frame_Shift_Del_p.Y7fs	NM_002086	NP_002077	P62993	GRB2_HUMAN	growth factor receptor-bound protein 2 isoform	7	SH3 1.				axon guidance|blood coagulation|cell junction assembly|cell-cell signaling|cellular response to ionizing radiation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|receptor internalization|signal transduction in response to DNA damage|T cell costimulation	cytosol|Golgi apparatus	epidermal growth factor receptor binding|insulin receptor substrate binding|SH3/SH2 adaptor activity			ovary(3)	3	all_cancers(13;5.44e-09)|all_epithelial(9;1.1e-09)|Breast(9;1.85e-09)|all_lung(278;0.222)		all cancers(21;1.09e-07)|Epithelial(20;1.23e-06)|Lung(188;0.185)		Pegademase bovine(DB00061)	TTGAAGTCATATTTGGCGATG	0.562													91	138	---	---	---	---					
CP	1356	broad.mit.edu	37	3	148901328	148901329	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr3:148901328_148901329delAC	uc003ewy.3	-	13	2602_2603	c.2349_2350delGT	c.(2347-2352)GTGTATfs	p.V783fs	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Frame_Shift_Del_p.V564fs|CP_uc003ewz.2_Frame_Shift_Del_p.V783fs	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	783_784	Plastocyanin-like 5.|F5/8 type A 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	TACTGCCGATACACAACTTTCT	0.342													47	36	---	---	---	---					
TMPRSS11B	132724	broad.mit.edu	37	4	69095137	69095137	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr4:69095137delA	uc003hdw.3	-	8	920	c.784delT	c.(784-786)TATfs	p.Y262fs		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	262	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						GGACTGCTATAATTTTCATGA	0.343													16	46	---	---	---	---					
CSMD3	114788	broad.mit.edu	37	8	113662425	113662425	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3AD-06A-11D-A196-08	TCGA-EE-A3AD-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4b068a3-6f46-4540-8b62-66b26d100df3	a69efca9-8019-4d30-b604-ea4d0705de0f	g.chr8:113662425delT	uc003ynu.2	-	19	3317	c.3158delA	c.(3157-3159)AACfs	p.N1053fs	CSMD3_uc003yns.2_Frame_Shift_Del_p.N325fs|CSMD3_uc003ynt.2_Frame_Shift_Del_p.N1013fs|CSMD3_uc011lhx.1_Frame_Shift_Del_p.N949fs	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1053	Extracellular (Potential).|Sushi 5.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCACCAGTGGTTTTTTTCGCA	0.378										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			7	205	---	---	---	---					
