Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRKCZ	5590	broad.mit.edu	37	1	2082350	2082350	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:2082350G>A	uc001aiq.2	+	9	970	c.809G>A	c.(808-810)CGG>CAG	p.R270Q	PRKCZ_uc001air.2_Missense_Mutation_p.R87Q|PRKCZ_uc010nyw.1_Missense_Mutation_p.R166Q|PRKCZ_uc001ais.2_Missense_Mutation_p.R87Q|PRKCZ_uc009vla.2_Missense_Mutation_p.R94Q|PRKCZ_uc010nyx.1_RNA|PRKCZ_uc009vlb.2_Missense_Mutation_p.R83Q	NM_002744	NP_002735	Q05513	KPCZ_HUMAN	protein kinase C, zeta isoform 1	270	Protein kinase.				anti-apoptosis|intracellular signal transduction|negative regulation of insulin receptor signaling pathway|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein complex assembly|peptidyl-serine phosphorylation|platelet activation	endosome	ATP binding|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(2)	6	all_cancers(77;0.000177)|all_epithelial(69;6.41e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.96e-37)|OV - Ovarian serous cystadenocarcinoma(86;3.3e-23)|GBM - Glioblastoma multiforme(42;2.85e-08)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00294)|BRCA - Breast invasive adenocarcinoma(365;0.00493)|STAD - Stomach adenocarcinoma(132;0.00669)|KIRC - Kidney renal clear cell carcinoma(229;0.0411)|Lung(427;0.213)		CTCCTGGTGCGGTTGAAGAAG	0.557													4	67					0	0	0.000602	0	0
PRDM16	63976	broad.mit.edu	37	1	3328862	3328862	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:3328862G>A	uc001akf.2	+	9	2181	c.2101G>A	c.(2101-2103)GAG>AAG	p.E701K	PRDM16_uc001akc.2_Missense_Mutation_p.E701K|PRDM16_uc001akd.2_Missense_Mutation_p.E701K|PRDM16_uc001ake.2_Missense_Mutation_p.E701K|PRDM16_uc009vlh.2_Missense_Mutation_p.E402K	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	701	Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		ATCCATTGCCGAGAAGTACTT	0.622			T	EVI1	MDS|AML								6	81					0	0	0.001984	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724446	7724446	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:7724446C>T	uc001aoi.2	+	9	2046	c.1839C>T	c.(1837-1839)TCC>TCT	p.S613S		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	613					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		AGACCCCCTCCCCGAGCTTCT	0.642													5	130					0	0	0.000602	0	0
UBIAD1	29914	broad.mit.edu	37	1	11346014	11346014	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:11346014C>T	uc001asg.2	+	2	1177	c.843C>T	c.(841-843)ATC>ATT	p.I281I		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	281	Helical; (Potential).				menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		ACTGCACCATCAGCCTGGCAC	0.572													7	140					0	0	0.003080	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919656	12919656	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:12919656G>T	uc001aum.1	+	3	483	c.396G>T	c.(394-396)AGG>AGT	p.R132S		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	132											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGAGTAAGAGGCAGACAGCAG	0.537													5	294					0.000442599	0.000469514	0.006214	1	0
PRAMEF2	65122	broad.mit.edu	37	1	12919918	12919918	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:12919918C>T	uc001aum.1	+	3	745	c.658C>T	c.(658-660)CTG>TTG	p.L220L		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	220											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTGGCCACATCTGATAAGAAA	0.378													6	98					0	0	0.001168	0	0
CTRC	11330	broad.mit.edu	37	1	15770006	15770006	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:15770006C>T	uc001awi.1	+	5	472	c.449C>T	c.(448-450)CCC>CTC	p.P150L	CTRC_uc001awj.1_Missense_Mutation_p.P150L	NM_007272	NP_009203	Q99895	CTRC_HUMAN	chymotrypsin C preproprotein	150	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0		Breast(348;0.000207)|all_lung(284;0.00021)|Colorectal(325;0.000257)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)|Hepatocellular(190;0.0634)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCCCTGCTCCCCAAGGACTAC	0.582													7	159					0	0	0.001984	0	0
CELA2A	63036	broad.mit.edu	37	1	15789236	15789236	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:15789236G>A	uc001awk.2	+	4	262	c.236G>A	c.(235-237)AGG>AAG	p.R79K		NM_033440	NP_254275	P08217	CEL2A_HUMAN	elastase 2A preproprotein	79	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						AGCTCCTCCAGGACCTACCGC	0.617													6	92					0	0	0.001984	0	0
EPHA8	2046	broad.mit.edu	37	1	22927885	22927885	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:22927885C>T	uc001bfx.1	+	16	2947	c.2822C>T	c.(2821-2823)TCC>TTC	p.S941F		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	941	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TGGCTGGACTCCATCCGCATG	0.682													4	87					0	0	0.009096	0	0
ARID1A	8289	broad.mit.edu	37	1	27058011	27058011	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:27058011C>T	uc001bmv.1	+	3	2092	c.1719C>T	c.(1717-1719)CTC>CTT	p.L573L	ARID1A_uc001bmt.1_Silent_p.L573L|ARID1A_uc001bmu.1_Silent_p.L573L|ARID1A_uc001bmw.1_Silent_p.L190L	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	573					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		CCTCGACGCTCTCCCAGCAGG	0.632			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								6	170					0	0	0.001168	0	0
ARID1A	8289	broad.mit.edu	37	1	27101206	27101206	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:27101206C>T	uc001bmv.1	+	18	4861	c.4488C>T	c.(4486-4488)ACC>ACT	p.T1496T	ARID1A_uc001bmt.1_Silent_p.T1495T|ARID1A_uc001bmu.1_Intron|ARID1A_uc001bmw.1_Silent_p.T1113T|ARID1A_uc001bmx.1_Silent_p.T342T|ARID1A_uc009vsm.1_Intron|ARID1A_uc009vsn.1_5'UTR	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1496					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		AGCAAGGCACCATGTGGCAGG	0.592			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								4	121					0	0	0.009096	0	0
PUM1	9698	broad.mit.edu	37	1	31406064	31406064	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:31406064G>A	uc001bsi.1	-	22	3668	c.3555C>T	c.(3553-3555)ATC>ATT	p.I1185I	PUM1_uc001bsf.1_Silent_p.I853I|PUM1_uc001bsg.1_Silent_p.I919I|PUM1_uc001bsh.1_Silent_p.I1187I|PUM1_uc001bsj.1_Silent_p.I1161I|PUM1_uc010oga.1_Silent_p.I1043I|PUM1_uc001bsk.1_Silent_p.I1223I|PUM1_uc010ogb.1_Silent_p.I1126I	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	1185					cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		TGCCTCAGATGATACCATTAG	0.522													6	127					0	0	0.001984	0	0
TSSK3	81629	broad.mit.edu	37	1	32829396	32829396	+	Missense_Mutation	SNP	C	T	T	rs138699524		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:32829396C>T	uc001bvf.2	+	2	787	c.346C>T	c.(346-348)CGT>TGT	p.R116C	uc001bve.1_5'Flank	NM_052841	NP_443073	Q96PN8	TSSK3_HUMAN	testis-specific serine kinase 3	116	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			stomach(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.17)|Breast(348;0.212)				GGCCCTCTTCCGTCAGATGGT	0.597													7	95					0	0	0.001984	0	0
RIMKLA	284716	broad.mit.edu	37	1	42875708	42875708	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:42875708C>T	uc001chi.2	+	4	673	c.535C>T	c.(535-537)CTG>TTG	p.L179L		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	179	ATP-grasp.|ATP (By similarity).				protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						CATCTGCCATCTGATCCGCCA	0.507													12	117					0	0	0.004007	0	0
TIE1	7075	broad.mit.edu	37	1	43777469	43777469	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:43777469G>A	uc001ciu.2	+	10	1540	c.1461G>A	c.(1459-1461)CAG>CAA	p.Q487Q	TIE1_uc010okd.1_Silent_p.Q487Q|TIE1_uc010oke.1_Silent_p.Q442Q|TIE1_uc009vwq.2_Silent_p.Q443Q|TIE1_uc010okf.1_Silent_p.Q132Q|TIE1_uc010okg.1_Silent_p.Q132Q	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	487	Extracellular (Potential).|Fibronectin type-III 1.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ACCGGCCCCAGGACAGTACCA	0.607													5	80					0	0	0.001168	0	0
CDC20	991	broad.mit.edu	37	1	43825722	43825722	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:43825722C>T	uc001cix.2	+	5	611	c.510C>T	c.(508-510)TCC>TCT	p.S170S	CDC20_uc001ciy.2_Silent_p.S170S	NM_001255	NP_001246	Q12834	CDC20_HUMAN	cell division cycle 20	170					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	cytosol|nucleoplasm|spindle	enzyme binding|protein C-terminus binding				0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ACATTCCTTCCCTGCCAGACC	0.532													9	197					0	0	0.001855	0	0
MOBKL2C	148932	broad.mit.edu	37	1	47075794	47075794	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:47075794G>A	uc001cqf.3	-	3	732	c.501C>T	c.(499-501)ATC>ATT	p.I167I	MKNK1_uc010omf.1_Intron|MOBKL2C_uc001cqe.3_Silent_p.I219I	NM_201403	NP_958805	Q70IA8	MOL2C_HUMAN	MOB1, Mps One Binder kinase activator-like 2C	167							metal ion binding			pancreas(1)	1	Acute lymphoblastic leukemia(166;0.155)					CGAAGTGGTGGATGTAGACAT	0.562													5	97					0	0	0.000602	0	0
C1orf175	374977	broad.mit.edu	37	1	55119589	55119589	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:55119589C>T	uc010ooe.1	+	3	1314	c.990C>T	c.(988-990)ATC>ATT	p.I330I	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxo.2_Silent_p.I330I|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Intron|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Silent_p.I330I|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	330	Ser-rich.					integral to membrane	binding				0						TGACTCTAATCCTGGGTTCCA	0.557													5	90					0	0	0.000602	0	0
PRKAA2	5563	broad.mit.edu	37	1	57173265	57173265	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:57173265C>T	uc001cyk.3	+	9	1609	c.1538C>T	c.(1537-1539)TCT>TTT	p.S513F		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	513					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						CATTCACTTTCTGGCTCTCTC	0.488													7	121					0	0	0.004482	0	0
C1orf168	199920	broad.mit.edu	37	1	57216843	57216843	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:57216843G>A	uc001cym.3	-	9	1667	c.1261C>T	c.(1261-1263)CAG>TAG	p.Q421*	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	421										ovary(3)|skin(2)	5						TTGGTCATCTGAATTTTTTCA	0.458													9	48					0	0	0.004482	0	0
INADL	10207	broad.mit.edu	37	1	62330222	62330222	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:62330222C>T	uc001dab.2	+	20	2866	c.2752C>T	c.(2752-2754)CCA>TCA	p.P918S	INADL_uc009waf.1_Missense_Mutation_p.P918S|INADL_uc001daa.2_Missense_Mutation_p.P918S|INADL_uc001dad.3_Missense_Mutation_p.P615S|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	918					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TGATAATGAACCATCCGAGTC	0.483													4	95					0	0	0.009096	0	0
LRRC7	57554	broad.mit.edu	37	1	70504196	70504196	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:70504196C>T	uc001dep.2	+	19	2605	c.2575C>T	c.(2575-2577)CCT>TCT	p.P859S	LRRC7_uc009wbg.2_Missense_Mutation_p.P143S|LRRC7_uc001deq.2_Missense_Mutation_p.P100S	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	859						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GACCGCTTTTCCTTCCAAATT	0.468													4	79					0	0	0.009096	0	0
TNNI3K	51086	broad.mit.edu	37	1	74901813	74901813	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:74901813G>A	uc001dgf.1	+	18	1873	c.1822G>A	c.(1822-1824)GGA>AGA	p.G608R	TNNI3K_uc001dgd.2_Missense_Mutation_p.G709R|TNNI3K_uc001dge.1_Missense_Mutation_p.G709R	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	608	Protein kinase.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						GGCAGATTTTGGAGGTGAGAT	0.373													7	91					0	0	0.004482	0	0
LPHN2	23266	broad.mit.edu	37	1	82447545	82447545	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:82447545C>T	uc001dit.3	+	18	3297	c.3116C>T	c.(3115-3117)TCC>TTC	p.S1039F	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.S1039F|LPHN2_uc001div.2_Missense_Mutation_p.S1039F|LPHN2_uc009wcd.2_Missense_Mutation_p.S1039F|LPHN2_uc001diw.2_Missense_Mutation_p.S623F|LPHN2_uc009wce.1_Missense_Mutation_p.S140F	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1052	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CTCACCTGGTCCTTTGGGTTG	0.393													10	189					0	0	0.006214	0	0
SYDE2	84144	broad.mit.edu	37	1	85656401	85656401	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:85656401C>T	uc009wcm.2	-	2	829	c.780G>A	c.(778-780)AAG>AAA	p.K260K	SYDE2_uc001dku.3_Silent_p.K260K	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	260					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		GTTCTCTTCCCTTCATTGAAG	0.358													5	174					0	0	0.000602	0	0
ZNF326	284695	broad.mit.edu	37	1	90473073	90473073	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:90473073C>T	uc001dnq.2	+	5	518	c.379C>T	c.(379-381)CAG>TAG	p.Q127*	ZNF326_uc009wda.1_Intron|ZNF326_uc001dnr.2_Intron	NM_182976	NP_892021	Q5BKZ1	ZN326_HUMAN	zinc finger protein 326 isoform 1	127	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	DNA binding			ovary(1)	1		all_lung(203;0.0116)|Lung NSC(277;0.0417)		all cancers(265;0.00728)|Epithelial(280;0.0265)		AGGTAGAAACCAGGGCGGGTC	0.493													5	164					0	0	0.001168	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94639975	94639975	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:94639975T>A	uc001dqj.3	-	23	3605	c.3236A>T	c.(3235-3237)AAA>ATA	p.K1079I	ARHGAP29_uc009wdq.1_Intron	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	1079					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GTCCTGAATTTTCTGTAGAGT	0.413													6	186					0	0	0.001168	0	0
WDR47	22911	broad.mit.edu	37	1	109524385	109524385	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:109524385G>A	uc001dwj.2	-	13	2744	c.2368C>T	c.(2368-2370)CGT>TGT	p.R790C	WDR47_uc001dwl.2_Missense_Mutation_p.R798C|WDR47_uc001dwi.2_Missense_Mutation_p.R791C|WDR47_uc010ovf.1_Missense_Mutation_p.R715C	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	790	WD 4.									ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		CCAACAACACGAACACAACTT	0.373													8	253					0	0	0.004482	0	0
GNAT2	2780	broad.mit.edu	37	1	110146621	110146621	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:110146621C>T	uc001dya.2	-	7	1039	c.826G>A	c.(826-828)GAA>AAA	p.E276K		NM_005272	NP_005263	P19087	GNAT2_HUMAN	guanine nucleotide binding protein, alpha	276					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	G-protein beta/gamma-subunit complex binding|G-protein coupled photoreceptor activity|G-protein-coupled receptor binding|GTP binding|GTPase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0422)|Colorectal(144;0.108)|Epithelial(280;0.125)|all cancers(265;0.129)|LUSC - Lung squamous cell carcinoma(189;0.227)		TTGATTTTTTCCTCAAAGAGG	0.393													6	53					0	0	0.001168	0	0
KCNA10	3744	broad.mit.edu	37	1	111059896	111059896	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:111059896G>A	uc001dzt.1	-	1	1902	c.1514C>T	c.(1513-1515)TCC>TTC	p.S505F		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	505						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		CTTCTCTGTGGAACAGCCACC	0.353													6	92					0	0	0.003080	0	0
C1orf162	128346	broad.mit.edu	37	1	112020304	112020304	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:112020304C>T	uc001ebe.2	+	5	294	c.234C>T	c.(232-234)GGC>GGT	p.G78G		NM_174896	NP_777556	Q8NEQ5	CA162_HUMAN	hypothetical protein LOC128346	78						integral to membrane				ovary(1)	1		all_cancers(81;0.00116)|all_epithelial(167;0.000761)|all_lung(203;0.00277)|Lung NSC(277;0.0043)		Lung(183;0.0236)|Colorectal(144;0.0286)|all cancers(265;0.0572)|Epithelial(280;0.0862)|COAD - Colon adenocarcinoma(174;0.112)|LUSC - Lung squamous cell carcinoma(189;0.134)		TTTCCCCAGGCCCATTGCTGA	0.587													4	93					0	0	0.000602	0	0
HAO2	51179	broad.mit.edu	37	1	119936434	119936434	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:119936434C>T	uc001ehq.1	+	9	1379	c.1027C>T	c.(1027-1029)CGA>TGA	p.R343*	HAO2_uc001ehr.1_Nonsense_Mutation_p.R343*	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	343	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		TGAGATCAATCGAAACTTGGT	0.478													5	125					0	0	0.000602	0	0
REG4	83998	broad.mit.edu	37	1	120337285	120337285	+	Missense_Mutation	SNP	C	T	T	rs150927973		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:120337285C>T	uc001eig.2	-	7	873	c.433G>A	c.(433-435)GAA>AAA	p.E145K	REG4_uc001eif.2_Missense_Mutation_p.E145K	NM_001159352	NP_001152824	Q9BYZ8	REG4_HUMAN	regenerating islet-derived family, member 4	145	C-type lectin.					extracellular region	sugar binding			ovary(1)	1	all_cancers(5;4.81e-10)|all_epithelial(5;7.98e-11)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;8.1e-07)|Lung NSC(69;5.89e-06)|all_epithelial(167;0.000959)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0588)		TTGTTGCATTCGTTGCTGCTC	0.423													26	416					0	0	0.007291	0	0
NOTCH2	4853	broad.mit.edu	37	1	120458308	120458308	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:120458308G>A	uc001eik.2	-	34	7293	c.7037C>T	c.(7036-7038)GCC>GTC	p.A2346V		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2346	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGGCAAACGGGCCATTTCTGG	0.627			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				20	523					0	0	0.010504	0	0
NOTCH2	4853	broad.mit.edu	37	1	120469125	120469125	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:120469125G>A	uc001eik.2	-	24	4258	c.4002C>T	c.(4000-4002)CCC>CCT	p.P1334P		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1334	EGF-like 34.|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CACTTACCGGGGGACAACGGC	0.488			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				7	235					0	0	0.001984	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144867988	144867988	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:144867988C>T	uc001elw.3	-	33	5742	c.5451G>A	c.(5449-5451)CAG>CAA	p.Q1817Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.Q1711Q|PDE4DIP_uc001elv.3_Silent_p.Q824Q|PDE4DIP_uc001ema.2_Silent_p.Q4Q	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1817					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CACTCCCTTTCTGAGGCCTCA	0.547			T	PDGFRB	MPD								10	380					0	0	0.006214	0	0
NBPF10	100132406	broad.mit.edu	37	1	145304540	145304540	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:145304540C>T	uc001end.3	+	10	1508	c.1473C>T	c.(1471-1473)TCC>TCT	p.S491S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Silent_p.S422S|NBPF9_uc010oyg.1_Silent_p.S456S|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Silent_p.S30S|NBPF10_uc001emq.1_Silent_p.S220S	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		CTTATGACTCCAACCAGCCAC	0.458													9	508					0	0	0.004482	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058786	152058786	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:152058786C>T	uc001ezo.1	-	3	1437	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	458							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CCTTCAAGTTCAGGGTGAGTC	0.443													6	223					0	0	0.001168	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059079	152059079	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:152059079G>A	uc001ezo.1	-	3	1144	c.1079C>T	c.(1078-1080)TCT>TTT	p.S360F		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	360							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TTGGGTCTCAGATGTTCTGCC	0.423													7	212					0	0	0.001984	0	0
RPTN	126638	broad.mit.edu	37	1	152127905	152127905	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:152127905G>A	uc001ezs.1	-	3	1735	c.1670C>T	c.(1669-1671)TCC>TTC	p.S557F		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	557	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACCGTAGTGGGAACTCTGGCC	0.517													18	561					0	0	0.007413	0	0
HRNR	388697	broad.mit.edu	37	1	152192203	152192203	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:152192203G>A	uc001ezt.1	-	3	1978	c.1902C>T	c.(1900-1902)TCC>TCT	p.S634S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	634	6.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCGTGGCTGGAAGACTGAC	0.577													12	336					0	0	0.001855	0	0
FLG	2312	broad.mit.edu	37	1	152276739	152276739	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:152276739C>T	uc001ezu.1	-	3	10659	c.10623G>A	c.(10621-10623)CAG>CAA	p.Q3541Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3541	Ser-rich.|Filaggrin 21.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCACTGTCCTGGCTAACAC	0.572									Ichthyosis				6	242					0	0	0.004482	0	0
FLG	2312	broad.mit.edu	37	1	152277136	152277136	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:152277136C>T	uc001ezu.1	-	3	10262	c.10226G>A	c.(10225-10227)CGA>CAA	p.R3409Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3409	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTTGTCTTCGTCCAGTGCT	0.602									Ichthyosis				8	214					0	0	0.006214	0	0
FLG	2312	broad.mit.edu	37	1	152284324	152284324	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:152284324G>A	uc001ezu.1	-	3	3074	c.3038C>T	c.(3037-3039)TCC>TTC	p.S1013F	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1013	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCACCAGAGGAAGTCTCTGC	0.587									Ichthyosis				10	393					0	0	0.008291	0	0
FLG	2312	broad.mit.edu	37	1	152284513	152284513	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:152284513C>T	uc001ezu.1	-	3	2885	c.2849G>A	c.(2848-2850)AGT>AAT	p.S950N	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	950	Ser-rich.|Filaggrin 5.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCACTGTCACTGTCCTGGCT	0.562									Ichthyosis				8	274					0	0	0.006214	0	0
FLG2	388698	broad.mit.edu	37	1	152329730	152329730	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:152329730G>A	uc001ezw.3	-	3	605	c.532C>T	c.(532-534)CAG>TAG	p.Q178*	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	178	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TATCTTTTCTGAGATCCCTCT	0.478													6	188					0	0	0.001984	0	0
NUP210L	91181	broad.mit.edu	37	1	154076521	154076521	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:154076521C>T	uc001fdw.2	-	13	1858	c.1786G>A	c.(1786-1788)GAT>AAT	p.D596N	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.D596N	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	596						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CCTTGTTTATCCATGTTCAGA	0.343													5	71					0	0	0.000602	0	0
SYT11	23208	broad.mit.edu	37	1	155851155	155851155	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:155851155C>T	uc001fmg.2	+	4	1415	c.1152C>T	c.(1150-1152)TTC>TTT	p.F384F	SYT11_uc010pgq.1_Silent_p.F77F	NM_152280	NP_689493	Q9BT88	SYT11_HUMAN	synaptotagmin XI	384	C2 2.|Cytoplasmic (Potential).					cell junction|synaptic vesicle membrane	protein binding|transporter activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;0.000162)			TTATCGACTTCGATCGCACCA	0.537													16	270					0	0	0.003163	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156926341	156926341	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:156926341G>A	uc001fqo.2	-	18	2462	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F	ARHGEF11_uc001fqn.2_Silent_p.F514F|ARHGEF11_uc001fqp.1_Silent_p.F3F	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	474	RGSL.				actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TATTGAGGGCGAAGTCCATGG	0.527													5	101					0	0	0.001984	0	0
FCRL3	115352	broad.mit.edu	37	1	157665245	157665245	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:157665245C>T	uc001frb.2	-	8	1577	c.1285G>A	c.(1285-1287)GCC>ACC	p.A429T	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.A429T|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.A155T|FCRL3_uc001frc.1_Missense_Mutation_p.A429T	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	429	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CCAGAGGGGGCTGAGCTGTTC	0.582													6	146					0	0	0.001168	0	0
OR10K2	391107	broad.mit.edu	37	1	158389802	158389802	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:158389802G>A	uc010pii.1	-	1	855	c.855C>T	c.(853-855)TTC>TTT	p.F285F		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TCATTGGGTTGAACAATGGAG	0.358													6	66					0	0	0.001984	0	0
OR10K1	391109	broad.mit.edu	37	1	158435856	158435856	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:158435856C>T	uc010pij.1	+	1	505	c.505C>T	c.(505-507)CAC>TAC	p.H169Y		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCTGCCCTTCCACTCCTCCAA	0.537													6	205					0	0	0.004482	0	0
OR10R2	343406	broad.mit.edu	37	1	158449784	158449784	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:158449784C>T	uc010pik.1	+	1	117	c.117C>T	c.(115-117)AGC>AGT	p.S39S	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	39	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					GTTTTTCCAGCCTTGGTGAAA	0.418													7	97					0	0	0.001984	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161166530	161166530	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:161166530G>A	uc001fyt.3	-	2	1202	c.774C>T	c.(772-774)ATC>ATT	p.I258I	ADAMTS4_uc001fyu.2_Silent_p.I258I|NDUFS2_uc001fyv.2_5'Flank	NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	258	Peptidase M12B.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CAGGATTGCGGATGCTTGGGT	0.627													5	130					0	0	0.000602	0	0
C1orf111	284680	broad.mit.edu	37	1	162344380	162344380	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:162344380C>T	uc001gbx.2	-	3	308	c.244G>A	c.(244-246)GGA>AGA	p.G82R		NM_182581	NP_872387	Q5T0L3	CA111_HUMAN	hypothetical protein LOC284680	82										ovary(1)	1	all_hematologic(112;0.15)		BRCA - Breast invasive adenocarcinoma(70;0.0938)			AGCTTCTCTCCGTGCTGGGTA	0.572													5	121					0	0	0.000602	0	0
TIPRL	261726	broad.mit.edu	37	1	168153168	168153168	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:168153168C>G	uc001gfg.2	+	2	278	c.133C>G	c.(133-135)CTC>GTC	p.L45V	TIPRL_uc001gfh.2_Missense_Mutation_p.L45V|TIPRL_uc001gff.2_Missense_Mutation_p.L45V	NM_152902	NP_690866	O75663	TIPRL_HUMAN	TIP41, TOR signalling pathway regulator-like	45					DNA damage checkpoint|negative regulation of protein phosphatase type 2A activity	cytoplasm	protein binding			ovary(1)	1	all_hematologic(923;0.215)					TATGCCATCTCTCCCTGAAAT	0.383													4	74					0	0	0.009096	0	0
SELE	6401	broad.mit.edu	37	1	169697306	169697306	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:169697306C>T	uc001ggm.3	-	8	1329	c.1172G>A	c.(1171-1173)GGG>GAG	p.G391E	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	391	Sushi 4.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					ACAGCTGGACCCATAACGGAA	0.527													4	107					0	0	0.009096	0	0
PIGC	5279	broad.mit.edu	37	1	172411668	172411668	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:172411668C>T	uc001gil.2	-	2	376	c.95G>A	c.(94-96)CGA>CAA	p.R32Q	PIGC_uc001gii.1_Intron|PIGC_uc001gij.1_Intron|C1orf105_uc001gik.2_Intron|PIGC_uc001gin.2_Missense_Mutation_p.R32Q|PIGC_uc001gio.2_Missense_Mutation_p.R32Q	NM_153747	NP_714969	Q92535	PIGC_HUMAN	phosphatidylinositol glycan, class C	32					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			lung(1)	1						TTCCAGGAATCGCCGGTCCAC	0.488													5	113					0	0	0.001168	0	0
TNN	63923	broad.mit.edu	37	1	175113579	175113579	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:175113579G>A	uc001gkl.1	+	18	3765	c.3652G>A	c.(3652-3654)GAT>AAT	p.D1218N		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1218	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CAGAGACAATGATATCGCACT	0.512													5	89					0	0	0.001168	0	0
TNR	7143	broad.mit.edu	37	1	175365770	175365770	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:175365770C>T	uc001gkp.1	-	3	1231	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K	TNR_uc009wwu.1_Missense_Mutation_p.E384K|TNR_uc010pmz.1_Missense_Mutation_p.G349E	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	384	Fibronectin type-III 1.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GGCTCCAGCTCCGTGATGGTG	0.597													4	46					0	0	0.009096	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525801	176525801	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:176525801C>T	uc001gkz.2	+	2	1507	c.343C>T	c.(343-345)CCA>TCA	p.P115S	PAPPA2_uc001gky.1_Missense_Mutation_p.P115S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	115					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GACTGAAAATCCAGCAGGACT	0.547													6	183					0	0	0.001168	0	0
FAM5B	57795	broad.mit.edu	37	1	177247706	177247706	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:177247706C>T	uc001glf.2	+	7	1332	c.1020C>T	c.(1018-1020)TTC>TTT	p.F340F	FAM5B_uc010pna.1_Silent_p.F90F|FAM5B_uc001glg.2_Silent_p.F235F	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	340						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CAGAAGAGTTCCAGGCCCTGC	0.587													7	203					0	0	0.004482	0	0
ABL2	27	broad.mit.edu	37	1	179078028	179078028	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:179078028G>A	uc001gmj.3	-	12	2661	c.2374C>T	c.(2374-2376)CCA>TCA	p.P792S	ABL2_uc010pnf.1_Missense_Mutation_p.P689S|ABL2_uc010png.1_Missense_Mutation_p.P668S|ABL2_uc010pnh.1_Missense_Mutation_p.P771S|ABL2_uc001gmg.3_Missense_Mutation_p.P674S|ABL2_uc001gmi.3_Missense_Mutation_p.P777S|ABL2_uc001gmh.3_Missense_Mutation_p.P756S|ABL2_uc010pne.1_Missense_Mutation_p.P653S	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	792	F-actin-binding (By similarity).				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TCCTGCTCTGGAAGCCCTGAG	0.517			T	ETV6	AML								16	111					0	0	0.004990	0	0
QSOX1	5768	broad.mit.edu	37	1	180159627	180159627	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:180159627C>A	uc001gnz.2	+	10	1275	c.1200C>A	c.(1198-1200)TTC>TTA	p.F400L	QSOX1_uc001gny.2_Missense_Mutation_p.F400L|QSOX1_uc001goa.2_Missense_Mutation_p.F400L	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	400	ERV/ALR sulfhydryl oxidase.				cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						AGCCGCATTTCCGGGGCTTTC	0.562													5	115					0.000602214	0.000636685	0.000602	1	0
C1orf14	81626	broad.mit.edu	37	1	182874684	182874684	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:182874684C>T	uc001gpu.2	-	7	1568	c.1283G>A	c.(1282-1284)GGA>GAA	p.G428E	C1orf14_uc001gpv.2_Missense_Mutation_p.G309E|C1orf14_uc010pnz.1_Missense_Mutation_p.G286E|C1orf14_uc001gpw.2_Missense_Mutation_p.G148E	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	500											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		TTGATATTCTCCTGGAAAAAT	0.353													4	44					0	0	0.009096	0	0
CRB1	23418	broad.mit.edu	37	1	197404165	197404165	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:197404165G>A	uc001gtz.2	+	9	3307	c.3172G>A	c.(3172-3174)GAA>AAA	p.E1058K	CRB1_uc010poz.1_Missense_Mutation_p.E1034K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.E946K|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.E539K|CRB1_uc001gub.1_Missense_Mutation_p.E707K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1058	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGTGGACAACGAAACACCTTT	0.443													6	67					0	0	0.001168	0	0
KIF21B	23046	broad.mit.edu	37	1	200967660	200967660	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:200967660G>A	uc001gvs.1	-	14	2246	c.1929C>T	c.(1927-1929)ATC>ATT	p.I643I	KIF21B_uc001gvr.1_Silent_p.I643I|KIF21B_uc009wzl.1_Silent_p.I643I|KIF21B_uc010ppn.1_Silent_p.I643I	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	643	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GCTTGATTTCGATCTCACAAG	0.572													5	76					0	0	0.000602	0	0
MDM4	4194	broad.mit.edu	37	1	204518492	204518492	+	Silent	SNP	T	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:204518492T>A	uc001hba.2	+	11	1317	c.1155T>A	c.(1153-1155)CTT>CTA	p.L385L	MDM4_uc001hbd.1_RNA|MDM4_uc010pqw.1_RNA|MDM4_uc010pqx.1_Silent_p.L258L|MDM4_uc001hay.1_Silent_p.L335L|MDM4_uc001hbb.2_Silent_p.L258L|MDM4_uc010pqy.1_Intron|MDM4_uc001hbc.2_RNA|MDM4_uc009xbe.1_RNA	NM_002393	NP_002384	O15151	MDM4_HUMAN	mouse double minute 4 homolog	385					apoptosis|cell proliferation|cellular response to hypoxia|G0 to G1 transition|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of protein catabolic process|negative regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization	nucleus	enzyme binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(21;0.00146)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.112)|all_epithelial(62;0.118)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;3.15e-47)|all cancers(3;3.56e-32)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|Epithelial(59;0.143)|BRCA - Breast invasive adenocarcinoma(75;0.143)			ACTCCAAACTTTTTGATCCCT	0.413			A		GBM|bladder|retinoblastoma								5	93					0	0	0.001168	0	0
KCNH1	3756	broad.mit.edu	37	1	210856890	210856890	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:210856890C>T	uc001hib.2	-	11	2873	c.2703G>A	c.(2701-2703)CAG>CAA	p.Q901Q	KCNH1_uc001hic.2_Silent_p.Q874Q	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	901	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		GACTCCGATCCTGGGGACTCC	0.612													5	39					0	0	0.000602	0	0
ESRRG	2104	broad.mit.edu	37	1	216680424	216680424	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:216680424G>A	uc001hkw.1	-	7	1400	c.1234C>T	c.(1234-1236)CGT>TGT	p.R412C	ESRRG_uc001hky.1_Missense_Mutation_p.R389C|ESRRG_uc009xdp.1_Missense_Mutation_p.R389C|ESRRG_uc001hkz.1_Missense_Mutation_p.R350C|ESRRG_uc010puc.1_Missense_Mutation_p.R389C|ESRRG_uc001hla.1_Missense_Mutation_p.R389C|ESRRG_uc001hlb.1_Missense_Mutation_p.R389C|ESRRG_uc010pud.1_Missense_Mutation_p.R220C|ESRRG_uc001hlc.1_Missense_Mutation_p.R389C|ESRRG_uc001hld.1_Missense_Mutation_p.R389C|ESRRG_uc001hkx.1_Missense_Mutation_p.R424C|ESRRG_uc009xdo.1_Missense_Mutation_p.R389C	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	412					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	CCAGCTCGACGAGGGTCTTCC	0.512													5	76					0	0	0.000602	0	0
CAPN2	824	broad.mit.edu	37	1	223947059	223947059	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:223947059C>T	uc001hob.3	+	12	1629	c.1405C>T	c.(1405-1407)CGG>TGG	p.R469W	CAPN2_uc010puy.1_Missense_Mutation_p.R391W|CAPN2_uc001hoc.2_Missense_Mutation_p.R50W	NM_001748	NP_001739	P17655	CAN2_HUMAN	calpain 2 isoform 1	469	Domain III.				proteolysis	cytoplasm|plasma membrane				lung(3)|breast(1)|skin(1)	5				GBM - Glioblastoma multiforme(131;0.109)		CATCAACCTCCGGGAGGTGCT	0.537													3	40					0	0	0.004672	0	0
RGS7	6000	broad.mit.edu	37	1	240975259	240975259	+	Silent	SNP	G	A	A	rs114051974	by1000genomes	TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:240975259G>A	uc001hyv.2	-	14	1371	c.1041C>T	c.(1039-1041)TTC>TTT	p.F347F	RGS7_uc010pyh.1_Silent_p.F321F|RGS7_uc010pyj.1_Silent_p.F263F|RGS7_uc001hyu.2_Silent_p.F347F|RGS7_uc009xgn.1_Silent_p.F294F|RGS7_uc001hyw.2_Silent_p.F347F|RGS7_uc001hyt.2_Silent_p.F179F	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	347	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			GAAATTTAAGGAACTGTTCTC	0.418													4	56					0	0	0.009096	0	0
VN1R5	317705	broad.mit.edu	37	1	247419559	247419559	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:247419559C>T	uc010pyu.1	+	2	186	c.186C>T	c.(184-186)ATC>ATT	p.I62I		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	62	Helical; Name=2; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			CAAACACCATCCTTCTTCTTT	0.373													8	171					0	0	0.003080	0	0
OR2B11	127623	broad.mit.edu	37	1	247614447	247614447	+	Missense_Mutation	SNP	G	A	A	rs113868131		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:247614447G>A	uc010pyx.1	-	1	838	c.838C>T	c.(838-840)CTC>TTC	p.L280F		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GAATAGAAGAGAGAAATAAAT	0.493													8	155					0	0	0.004482	0	0
OR2T10	127069	broad.mit.edu	37	1	248756631	248756631	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:248756631C>T	uc010pzn.1	-	1	439	c.439G>A	c.(439-441)GGC>AGC	p.G147S		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AACCAGCAGCCTGATGCCAGG	0.547													4	94					0	0	0.009096	0	0
TUBB8	347688	broad.mit.edu	37	10	93847	93847	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:93847C>T	uc001ifi.2	-	4	485	c.485G>A	c.(484-486)AGG>AAG	p.R162K	TUBB8_uc009xhe.2_Missense_Mutation_p.R125K|TUBB8_uc010pzs.1_Missense_Mutation_p.R90K	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	162					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		GTTTATGATCCTGTCTGGGTA	0.592													4	127					0	0	0.009096	0	0
TUBAL3	79861	broad.mit.edu	37	10	5435999	5435999	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:5435999G>A	uc001ihy.2	-	4	862	c.822C>T	c.(820-822)TTC>TTT	p.F274F	TUBAL3_uc001ihz.2_Silent_p.F234F	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	274					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						CTGTCATGGGGAAATGTATTC	0.512													10	170					0	0	0.008291	0	0
ANKRD16	54522	broad.mit.edu	37	10	5920125	5920125	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:5920125G>A	uc010qat.1	-	7	1597	c.1054C>T	c.(1054-1056)CTT>TTT	p.L352F	ANKRD16_uc009xie.2_Intron|ANKRD16_uc009xif.2_Missense_Mutation_p.L352F|ANKRD16_uc001iiq.2_3'UTR	NM_019046	NP_061919	Q6P6B7	ANR16_HUMAN	ankyrin repeat domain 16 isoform a	352											0						GAGCCCTGAAGGACATCTGCT	0.512													5	216					0	0	0.000602	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256046	15256046	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:15256046G>A	uc001iob.2	-	8	1548	c.1541C>T	c.(1540-1542)ACC>ATC	p.T514I		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	514	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TTCCTGAATGGTGAGTTTGCT	0.512													7	148					0	0	0.001984	0	0
PTCHD3	374308	broad.mit.edu	37	10	27703027	27703027	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:27703027C>T	uc001itu.2	-	1	271	c.153G>A	c.(151-153)CCG>CCA	p.P51P		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	51					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CGGGGGATTTCGGGGGTGCCA	0.682													6	108					0	0	0.001984	0	0
PPYR1	5540	broad.mit.edu	37	10	47087170	47087170	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:47087170C>T	uc001jee.2	+	3	806	c.387C>T	c.(385-387)ATC>ATT	p.I129I	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.I129I	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	129	Helical; Name=3; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						CGGTCTCCATCCTCTCGCTCG	0.582													5	166					0	0	0.001168	0	0
ZNF488	118738	broad.mit.edu	37	10	48371419	48371419	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:48371419C>T	uc001jex.2	+	2	1049	c.887C>T	c.(886-888)TCC>TTC	p.S296F	ZNF488_uc001jey.2_Missense_Mutation_p.S189F	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	296	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CACATGCGATCCCACCACAAA	0.607													4	86					0	0	0.009096	0	0
OGDHL	55753	broad.mit.edu	37	10	50955175	50955175	+	Missense_Mutation	SNP	G	A	A	rs148413282	byFrequency	TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:50955175G>A	uc001jie.2	-	9	1209	c.1067C>T	c.(1066-1068)TCG>TTG	p.S356L	OGDHL_uc009xog.2_Missense_Mutation_p.S383L|OGDHL_uc010qgt.1_Missense_Mutation_p.S299L|OGDHL_uc010qgu.1_Missense_Mutation_p.S147L|OGDHL_uc009xoh.2_Missense_Mutation_p.S147L	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	356					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GGCAACCAGCGACAGAGTGAT	0.592													4	85					0	0	0.009096	0	0
PARG	8505	broad.mit.edu	37	10	51093329	51093329	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:51093329C>T	uc001jif.2	-	8	2011	c.1750G>A	c.(1750-1752)GCA>ACA	p.A584T	PARG_uc001jih.2_Missense_Mutation_p.A584T|PARG_uc001jig.2_Missense_Mutation_p.A170T|PARG_uc010qgv.1_Intron|PARG_uc009xoi.2_Intron|PARG_uc010qgw.1_Missense_Mutation_p.A475T|PARG_uc009xoj.2_Missense_Mutation_p.A135T|PARG_uc010qgx.1_Missense_Mutation_p.A502T	NM_003631	NP_003622	Q86W56	PARG_HUMAN	poly (ADP-ribose) glycohydrolase	584					carbohydrate metabolic process	nucleus	poly(ADP-ribose) glycohydrolase activity			ovary(2)	2				Epithelial(53;0.213)		TGAGCTTCTGCTTCTTCAAGT	0.318													3	57					0	0	0.004672	0	0
ANK3	288	broad.mit.edu	37	10	61815462	61815462	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:61815462C>T	uc001jky.2	-	42	13211	c.13019G>A	c.(13018-13020)AGG>AAG	p.R4340K	ANK3_uc001jkw.2_Missense_Mutation_p.R964K|ANK3_uc009xpa.2_Missense_Mutation_p.R964K|ANK3_uc001jkx.2_Missense_Mutation_p.R1008K|ANK3_uc010qih.1_Missense_Mutation_p.R1831K|ANK3_uc001jkz.3_Missense_Mutation_p.R1824K|ANK3_uc001jkv.2_Missense_Mutation_p.R363K	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4340					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAGGCTAAGCCTTGGCTTGCC	0.468													10	221					0	0	0.010729	0	0
ARID5B	84159	broad.mit.edu	37	10	63851616	63851616	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:63851616C>A	uc001jlt.1	+	10	2420	c.2394C>A	c.(2392-2394)GAC>GAA	p.D798E		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	798					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					CCCTTGCTGACTCCTACGTCC	0.498													6	133					2.0095e-06	2.15352e-06	0.001984	1	0
H2AFY2	55506	broad.mit.edu	37	10	71835480	71835480	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:71835480C>T	uc001jqm.2	+	2	525	c.66C>T	c.(64-66)ATC>ATT	p.I22I	H2AFY2_uc001jqn.2_RNA	NM_018649	NP_061119	Q9P0M6	H2AW_HUMAN	H2A histone family, member Y2	22	Histone H2A.				chromatin modification|dosage compensation|nucleosome assembly	Barr body|nucleosome	DNA binding			skin(1)	1						CAGGTGTCATCTTTCCAGTGG	0.552													7	58					0	0	0.003080	0	0
USP54	159195	broad.mit.edu	37	10	75289450	75289450	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:75289450G>A	uc001juo.2	-	13	2065	c.2048C>T	c.(2047-2049)TCA>TTA	p.S683L	USP54_uc001juk.2_5'UTR|USP54_uc001jul.2_5'UTR|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA|USP54_uc001jup.2_Missense_Mutation_p.S683L|USP54_uc010qkl.1_Missense_Mutation_p.S683L	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	683					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					GTAGACATTTGAGCTCTCAGG	0.527											OREG0020266	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	182					0	0	0.002450	0	0
GBF1	8729	broad.mit.edu	37	10	104120832	104120832	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:104120832C>T	uc001kux.1	+	13	1683	c.1443C>T	c.(1441-1443)TTC>TTT	p.F481F	GBF1_uc001kuy.1_Silent_p.F481F|GBF1_uc001kuz.1_Silent_p.F482F	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	481					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		GAGTATGCTTCCTACTGTTTG	0.428													8	108					0	0	0.004482	0	0
ABLIM1	3983	broad.mit.edu	37	10	116335274	116335274	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:116335274C>T	uc010qsg.1	-	3	563	c.464G>A	c.(463-465)GGG>GAG	p.G155E	ABLIM1_uc010qsh.1_Missense_Mutation_p.G95E|ABLIM1_uc010qsi.1_Missense_Mutation_p.G95E|ABLIM1_uc010qsk.1_Missense_Mutation_p.G79E|ABLIM1_uc009xyp.2_Missense_Mutation_p.G89E|ABLIM1_uc009xyo.2_Missense_Mutation_p.G3E	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	155	LIM zinc-binding 1.				axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		GCAGCGTGTCCCGTACATCCG	0.547													4	86					0	0	0.009096	0	0
DMBT1	1755	broad.mit.edu	37	10	124380767	124380767	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:124380767G>A	uc001lgk.1	+	41	5198	c.5092G>A	c.(5092-5094)GGC>AGC	p.G1698S	DMBT1_uc001lgl.1_Missense_Mutation_p.G1688S|DMBT1_uc001lgm.1_Missense_Mutation_p.G1070S|DMBT1_uc009xzz.1_Missense_Mutation_p.G1698S|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.G401S|DMBT1_uc009yac.1_Missense_Mutation_p.G12S	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1698	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTTTGGCCAGGGCTCAGGACC	0.612													9	219					0	0	0.006214	0	0
DOCK1	1793	broad.mit.edu	37	10	129224221	129224221	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:129224221C>T	uc001ljt.2	+	47	4861	c.4797C>T	c.(4795-4797)GCC>GCT	p.A1599A	DOCK1_uc010qun.1_Silent_p.A1620A|DOCK1_uc009yaq.2_Silent_p.A594A	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1599	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		GGATGGAGGCCTGTTTCAAAC	0.517													10	218					0	0	0.006214	0	0
MKI67	4288	broad.mit.edu	37	10	129906972	129906972	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr10:129906972G>A	uc001lke.2	-	13	3327	c.3132C>T	c.(3130-3132)TTC>TTT	p.F1044F	MKI67_uc001lkf.2_Silent_p.F684F|MKI67_uc009yav.1_Silent_p.F619F|MKI67_uc009yaw.1_Silent_p.F194F	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1044	16 X 122 AA approximate repeats.|1.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				ACGTCCGTGTGAACTTGCCGA	0.522													10	296					0	0	0.010729	0	0
CARS	833	broad.mit.edu	37	11	3041490	3041490	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:3041490G>A	uc001lxh.2	-	10	1051	c.977C>T	c.(976-978)TCT>TTT	p.S326F	CARS_uc001lxe.2_Missense_Mutation_p.S316F|CARS_uc001lxf.2_Missense_Mutation_p.S409F|CARS_uc001lxg.2_Missense_Mutation_p.S326F|CARS_uc010qxo.1_Missense_Mutation_p.S409F|CARS_uc010qxp.1_Missense_Mutation_p.S339F	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	326					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	TCCGGGCTTAGAGGCCTTCCA	0.627			T	ALK	ALCL								5	75					0	0	0.001984	0	0
OR52I1	390037	broad.mit.edu	37	11	4615434	4615434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:4615434G>A	uc010qyi.1	+	1	166	c.166G>A	c.(166-168)GAT>AAT	p.D56N		NM_001005169	NP_001005169	Q8NGK6	O52I1_HUMAN	olfactory receptor, family 52, subfamily I,	56	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;7.98e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AATCTGGATGGATTCCACTCG	0.502													7	134					0	0	0.001984	0	0
OR51F2	119694	broad.mit.edu	37	11	4843090	4843090	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:4843090G>A	uc010qyn.1	+	1	475	c.475G>A	c.(475-477)GGG>AGG	p.G159R		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCCAAGATTGGGATGAGCAT	0.463													11	177					0	0	0.013537	0	0
OR56A4	120793	broad.mit.edu	37	11	6023370	6023370	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:6023370G>A	uc010qzv.1	-	1	1009	c.1009C>T	c.(1009-1011)CTC>TTC	p.L337F		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGGGAATGAGGTGGTGCAGG	0.498													4	58					0	0	0.009096	0	0
OR6A2	8590	broad.mit.edu	37	11	6816292	6816292	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:6816292G>A	uc001mes.1	-	1	848	c.648C>T	c.(646-648)CTC>CTT	p.L216L		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CAGTGACAGAGAGTGGCCCTA	0.502													5	109					0	0	0.000602	0	0
ABCC8	6833	broad.mit.edu	37	11	17485033	17485033	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:17485033G>A	uc001mnc.2	-	4	657	c.531C>T	c.(529-531)ATC>ATT	p.I177I	ABCC8_uc010rcy.1_Silent_p.I177I	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	177	Helical; Name=5; (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TCCCATAGAGGATCACCAGCA	0.597													14	422					0	0	0.004990	0	0
IGSF22	283284	broad.mit.edu	37	11	18745706	18745706	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:18745706C>T	uc009yht.2	-	2	268	c.78G>A	c.(76-78)CAG>CAA	p.Q26Q	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	26										ovary(4)|large_intestine(2)|kidney(1)	7						GGGAGAAGGTCTGCACGTGGG	0.602													7	124					0	0	0.001984	0	0
TTC17	55761	broad.mit.edu	37	11	43511823	43511823	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:43511823C>T	uc001mxi.2	+	22	3079	c.3065C>T	c.(3064-3066)GCC>GTC	p.A1022V	TTC17_uc010rfj.1_Missense_Mutation_p.A1022V|TTC17_uc001mxl.2_Missense_Mutation_p.A78V|TTC17_uc001mxm.2_Missense_Mutation_p.A3V	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	1022	TPR 4.						binding			ovary(5)	5						AGCATGGCAGCCCTCTACTGG	0.522													6	80					0	0	0.001984	0	0
DGKZ	8525	broad.mit.edu	37	11	46395974	46395974	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:46395974C>T	uc001ncn.1	+	17	2120	c.1995C>T	c.(1993-1995)AGC>AGT	p.S665S	DGKZ_uc001nch.1_Silent_p.S493S|DGKZ_uc010rgq.1_Silent_p.S420S|DGKZ_uc001ncj.1_Silent_p.S443S|DGKZ_uc010rgr.1_Silent_p.S442S|DGKZ_uc001nck.1_Silent_p.S255S|DGKZ_uc001ncl.2_Silent_p.S477S|DGKZ_uc001ncm.2_Silent_p.S476S|DGKZ_uc009yky.1_Silent_p.S477S|DGKZ_uc010rgs.1_Silent_p.S454S	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	665					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		AATTCAACAGCCGCTTTCGGA	0.642													4	70					0	0	0.009096	0	0
OR5D18	219438	broad.mit.edu	37	11	55587617	55587617	+	Missense_Mutation	SNP	G	A	A	rs138526931		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:55587617G>A	uc010rin.1	+	1	512	c.512G>A	c.(511-513)GGT>GAT	p.G171D		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				TGTTTTCATGGTTTCAACACA	0.458													4	101					0	0	0.001168	0	0
OR8H3	390152	broad.mit.edu	37	11	55890037	55890037	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:55890037C>T	uc001nii.1	+	1	189	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TGTATTTTTTCCTTACTCACC	0.428													8	258					0	0	0.006214	0	0
OR9G4	283189	broad.mit.edu	37	11	56510443	56510443	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:56510443G>A	uc010rjo.1	-	1	845	c.845C>T	c.(844-846)TCC>TTC	p.S282F		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	282	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCTCTCTAGGGAGTAGGTGGA	0.468													4	87					0	0	0.009096	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995415	57995415	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:57995415G>A	uc010rkd.1	-	1	933	c.933C>T	c.(931-933)ATC>ATT	p.I311I		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	311	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				CTGCTTTACGGATAATGGCAC	0.493													6	201					0	0	0.003080	0	0
OR5A1	219982	broad.mit.edu	37	11	59211109	59211109	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:59211109C>T	uc001nnx.1	+	1	468	c.468C>T	c.(466-468)TTC>TTT	p.F156F		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						TTGGTGGCTTCCTGAGCTCCC	0.562													10	266					0	0	0.010729	0	0
PGA5	5222	broad.mit.edu	37	11	61015892	61015892	+	Missense_Mutation	SNP	G	A	A	rs147049038	byFrequency	TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:61015892G>A	uc001nqz.2	+	6	688	c.658G>A	c.(658-660)GAT>AAT	p.D220N		NM_014224	NP_055039	P00790	PEPA_HUMAN	pepsinogen 5, group I precursor	220					digestion|proteolysis	extracellular region	aspartic-type endopeptidase activity			skin(1)	1						TTTCCACAGCGATGACAAGAG	0.498													10	373					0	0	0.010729	0	0
FTH1	2495	broad.mit.edu	37	11	61732984	61732984	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:61732984A>G	uc001nsu.2	-	2	353	c.118T>C	c.(118-120)TAC>CAC	p.Y40H		NM_002032	NP_002023	P02794	FRIH_HUMAN	ferritin, heavy polypeptide 1	40	Ferritin-like diiron.				cell proliferation|cellular membrane organization|immune response|intracellular sequestering of iron ion|iron ion transport|negative regulation of cell proliferation|post-Golgi vesicle-mediated transport	cytosol|intracellular ferritin complex	ferric iron binding|ferroxidase activity|protein binding			ovary(1)	1					Iron Dextran(DB00893)	TCAAAGTAGTAAGACTGAAAG	0.473													5	92					0	0	0.000602	0	0
FCHSD2	9873	broad.mit.edu	37	11	72600874	72600875	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:72600874_72600875CC>TT	uc009ytl.2	-	11	1261_1262	c.1040_1041GG>AA	c.(1039-1041)CGG>CAA	p.R347Q	FCHSD2_uc010rrg.1_Missense_Mutation_p.R211Q|FCHSD2_uc001oth.3_Missense_Mutation_p.R291Q|FCHSD2_uc001oti.2_Missense_Mutation_p.R306Q	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	347							protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			TTACACTTACCCGTTGTTGGTG	0.396													11	376					0	0	0.004672	0	0
ME3	10873	broad.mit.edu	37	11	86270816	86270816	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:86270816A>G	uc001pbz.2	-	2	487	c.233T>C	c.(232-234)CTA>CCA	p.L78P	ME3_uc001pca.2_Missense_Mutation_p.L78P|ME3_uc009yvk.2_Missense_Mutation_p.L78P|ME3_uc010rtr.1_RNA	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	78					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	GGGCGGGATTAGGCCGTGGAT	0.527													3	127					0	0	0.009096	0	0
ZNF259	8882	broad.mit.edu	37	11	116649743	116649743	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:116649743C>T	uc001ppp.2	-	14	1311	c.1278G>A	c.(1276-1278)ATG>ATA	p.M426I	ZNF259_uc009yzd.2_Missense_Mutation_p.M397I|ZNF259_uc001ppq.2_Missense_Mutation_p.M356I	NM_003904	NP_003895	O75312	ZPR1_HUMAN	zinc finger protein 259	426					cell proliferation|signal transduction	cytoplasm|nucleolus					0	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.61e-06)|all cancers(92;0.000139)|OV - Ovarian serous cystadenocarcinoma(223;0.153)		GCTCCACCTTCATCTCAGGAT	0.542													9	419					0	0	0.008291	0	0
AMICA1	120425	broad.mit.edu	37	11	118071193	118071193	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:118071193T>G	uc001psk.2	-	7	1081	c.907A>C	c.(907-909)AAG>CAG	p.K303Q	AMICA1_uc001psg.2_Missense_Mutation_p.K113Q|AMICA1_uc001psh.2_Missense_Mutation_p.K264Q|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Missense_Mutation_p.K293Q|AMICA1_uc001psj.2_Missense_Mutation_p.K292Q|AMICA1_uc010rxw.1_Missense_Mutation_p.K264Q|AMICA1_uc010rxx.1_Missense_Mutation_p.K303Q|AMICA1_uc001psl.1_Missense_Mutation_p.K259Q	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	303	Cytoplasmic (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		CTGTACCTCTTATTTCCACAG	0.527													3	65					0	0	0.009096	0	0
USP2	9099	broad.mit.edu	37	11	119243689	119243689	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:119243689G>A	uc001pwm.3	-	2	797	c.502C>T	c.(502-504)CGC>TGC	p.R168C	USP2_uc001pwn.3_Intron	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	168	Necessary for interaction with MDM4.				cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		ATGGGGCTGCGGCCCAGGTTC	0.632													5	98					0	0	0.001168	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781607	128781607	+	Missense_Mutation	SNP	G	A	A	rs148355179		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr11:128781607G>A	uc001qet.2	+	2	753	c.439G>A	c.(439-441)GAA>AAA	p.E147K	KCNJ5_uc009zck.2_Missense_Mutation_p.E147K|KCNJ5_uc001qew.2_Missense_Mutation_p.E147K	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	147					synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	CATTGAGACCGAAACAACCAT	0.527													6	133					0	0	0.003080	0	0
CHD4	1108	broad.mit.edu	37	12	6707587	6707587	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:6707587G>A	uc001qpo.2	-	11	1651	c.1487C>T	c.(1486-1488)CCA>CTA	p.P496L	CHD4_uc001qpn.2_Missense_Mutation_p.P489L|CHD4_uc001qpp.2_Missense_Mutation_p.P493L	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	496	Chromo 1.|PHD-type 2.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CTTCAGAGCTGGACACTGAGA	0.502													9	120					0	0	0.004482	0	0
CLEC4E	26253	broad.mit.edu	37	12	8692542	8692542	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:8692542C>T	uc001quo.1	-	2	204	c.39G>A	c.(37-39)GAG>GAA	p.E13E		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	13	Cytoplasmic (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					AGCATCCTCTCTCTGTAGAAA	0.403													5	126					0	0	0.000602	0	0
PRB1	5542	broad.mit.edu	37	12	11506486	11506486	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:11506486G>T	uc001qzw.1	-	4	588	c.551C>A	c.(550-552)CCA>CAA	p.P184Q	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GCCTCCTTGTGGGGGTGGTCC	0.602													6	151					3.86212e-05	4.11087e-05	0.008291	1	0
GRIN2B	2904	broad.mit.edu	37	12	13716761	13716761	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:13716761G>A	uc001rbt.2	-	13	3590	c.3411C>T	c.(3409-3411)TTC>TTT	p.F1137F		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1137	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCTTTGTTCGGAACTGGTCCA	0.602													8	48					0	0	0.004482	0	0
NELL2	4753	broad.mit.edu	37	12	45105149	45105149	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:45105149G>A	uc001rog.2	-	11	1710	c.1115C>T	c.(1114-1116)TCA>TTA	p.S372L	NELL2_uc001rof.3_Missense_Mutation_p.S371L|NELL2_uc001roh.2_Missense_Mutation_p.S372L|NELL2_uc009zkd.2_Missense_Mutation_p.S371L|NELL2_uc010skz.1_Missense_Mutation_p.S422L|NELL2_uc010sla.1_Missense_Mutation_p.S395L|NELL2_uc001roi.1_Missense_Mutation_p.S372L|NELL2_uc010slb.1_Missense_Mutation_p.S371L|NELL2_uc001roj.2_Missense_Mutation_p.S372L	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	372	VWFC 2.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		TGGACAGCCTGAACTCTCAAC	0.388													4	40					0	0	0.000602	0	0
SLC38A4	55089	broad.mit.edu	37	12	47173410	47173410	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:47173410A>T	uc001rpi.2	-	10	1100	c.701T>A	c.(700-702)GTG>GAG	p.V234E	SLC38A4_uc001rpj.2_Missense_Mutation_p.V234E|SLC38A4_uc009zkl.2_Missense_Mutation_p.V234E	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	234	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					AACAAAAAACACCATGCAGGT	0.378													6	87					0	0	0.001168	0	0
KRT1	3848	broad.mit.edu	37	12	53070226	53070226	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:53070226G>A	uc001sau.1	-	7	1367	c.1308C>T	c.(1306-1308)GCC>GCT	p.A436A	KRT1_uc001sav.1_Silent_p.A436A	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	436	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						CATCCTTGAGGGCATTCTCGC	0.542													4	46					0	0	0.009096	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54936426	54936426	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:54936426G>A	uc001sgc.3	+	31	3420	c.3341G>A	c.(3340-3342)CGA>CAA	p.R1114Q	NCKAP1L_uc010sox.1_Missense_Mutation_p.R656Q|NCKAP1L_uc010soy.1_Missense_Mutation_p.R1064Q	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	1114					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GTCCTGCTTCGAAATGCCTAT	0.537													9	117					0	0	0.008291	0	0
SILV	6490	broad.mit.edu	37	12	56349077	56349077	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:56349077G>A	uc001sip.2	-	10	1862	c.1831C>T	c.(1831-1833)CTT>TTT	p.L611F	SILV_uc001siq.2_Missense_Mutation_p.L618F|SILV_uc010spx.1_Missense_Mutation_p.L525F|SILV_uc001sir.2_Missense_Mutation_p.L611F	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	611	Helical; (Potential).				melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						AGAGATGCAAGGACCACAGCC	0.512													6	148					0	0	0.004482	0	0
WIF1	11197	broad.mit.edu	37	12	65462650	65462650	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:65462650C>T	uc001ssk.2	-	4	577	c.432G>A	c.(430-432)CAG>CAA	p.Q144Q		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	144	WIF.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		CCACCCCATCCTGTTTTCCAA	0.358			T	HMGA2	pleomorphic salivary gland adenoma								4	58					0	0	0.000602	0	0
BEST3	144453	broad.mit.edu	37	12	70049365	70049365	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:70049365G>A	uc001svg.2	-	10	1556	c.1329C>T	c.(1327-1329)CCC>CCT	p.P443P	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Silent_p.P230P|BEST3_uc010stm.1_Silent_p.P337P	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	443	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			AGGCCCTGGGGGGGTTTCTTG	0.592													5	90					0	0	0.000602	0	0
SYT1	6857	broad.mit.edu	37	12	79689912	79689912	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:79689912C>T	uc001sys.2	+	8	1209	c.538C>T	c.(538-540)CCT>TCT	p.P180S	SYT1_uc001syt.2_Missense_Mutation_p.P180S|SYT1_uc001syu.2_Missense_Mutation_p.P177S|SYT1_uc001syv.2_Missense_Mutation_p.P180S	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	180	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 1.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						CACATCTGATCCTTACGTGAA	0.423													4	66					0	0	0.009096	0	0
C12orf63	374467	broad.mit.edu	37	12	97158976	97158976	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:97158976C>T	uc001tet.1	+	27	3614	c.3536C>T	c.(3535-3537)TCG>TTG	p.S1179L		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1179										skin(6)|ovary(1)	7						CTTTTGTCTTCGTATACAGAT	0.289													4	50					0	0	0.009096	0	0
APAF1	317	broad.mit.edu	37	12	99060130	99060130	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:99060130C>T	uc001tfz.2	+	9	1934	c.1357C>T	c.(1357-1359)CTT>TTT	p.L453F	APAF1_uc001tfy.2_Missense_Mutation_p.L442F|APAF1_uc001tga.2_Missense_Mutation_p.L442F|APAF1_uc001tgb.2_Missense_Mutation_p.L453F|APAF1_uc001tgc.2_Intron	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	453					activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	TTGCAGCCAGCTTCAGGTACT	0.219													5	67					0	0	0.001984	0	0
PPP1CC	5501	broad.mit.edu	37	12	111169596	111169596	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:111169596C>T	uc001tru.2	-	2	411	c.166G>A	c.(166-168)GAA>AAA	p.E56K		NM_002710	NP_002701	P36873	PP1G_HUMAN	protein phosphatase 1, catalytic subunit, gamma	56					cell division|glycogen metabolic process|mitotic prometaphase|triglyceride catabolic process	cleavage furrow|condensed chromosome kinetochore|cytosol|midbody|MLL5-L complex|nuclear speck|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|protein binding|protein kinase binding|protein serine/threonine phosphatase activity			lung(2)|central_nervous_system(1)	3						AGTGGTGCTTCAAGTTCTAGT	0.398													4	87					0	0	0.009096	0	0
HNF1A	6927	broad.mit.edu	37	12	121431342	121431342	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:121431342G>A	uc001tzg.2	+	3	569	c.546G>A	c.(544-546)CAG>CAA	p.Q182Q	HNF1A_uc001tze.1_Silent_p.Q182Q|HNF1A_uc001tzf.2_Silent_p.Q182Q|HNF1A_uc010szn.1_Silent_p.Q182Q	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	182					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					ATGCAGGGCAGGGAGGGCTGA	0.592									Hepatic_Adenoma_Familial_Clustering_of				15	374					0	0	0.004007	0	0
RIMBP2	23504	broad.mit.edu	37	12	130883694	130883694	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr12:130883694G>A	uc001uil.2	-	19	3309	c.3145C>T	c.(3145-3147)CAT>TAT	p.H1049Y		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	1049						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GGTGTGAAATGAACACTCTTC	0.333													5	107					0	0	0.001168	0	0
TRPC4	7223	broad.mit.edu	37	13	38320170	38320170	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr13:38320170G>A	uc001uws.2	-	3	1036	c.801C>T	c.(799-801)ATC>ATT	p.I267I	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Silent_p.I267I|TRPC4_uc010tey.1_Silent_p.I267I|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Silent_p.I267I|TRPC4_uc010aby.2_Silent_p.I267I	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	267	Cytoplasmic (Potential).|Multimerization domain (By similarity).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		AATTAAGAATGATTTCCAGTT	0.393													5	136					0	0	0.000602	0	0
ZC3H13	23091	broad.mit.edu	37	13	46559584	46559584	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr13:46559584G>A	uc010tfw.1	-	9	1574	c.1568C>T	c.(1567-1569)CCA>CTA	p.P523L	ZC3H13_uc001vas.1_Missense_Mutation_p.P523L|ZC3H13_uc001vat.1_Missense_Mutation_p.P523L	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	523	Arg/Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		GGATTCTTCTGGATATGTATC	0.463													5	84					0	0	0.001168	0	0
LOC220429	220429	broad.mit.edu	37	13	50466783	50466783	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr13:50466783C>G	uc001vdk.2	+	1	2239	c.2057C>G	c.(2056-2058)ACT>AGT	p.T686S		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						AGTGAAGCAACTGGCCCTGGC	0.473													3	82					0	0	0.004482	0	0
PCDH20	64881	broad.mit.edu	37	13	61987027	61987027	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr13:61987027C>T	uc001vid.3	-	2	1569	c.1205G>A	c.(1204-1206)GGA>GAA	p.G402E	PCDH20_uc010thj.1_Missense_Mutation_p.G402E	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	375	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		GCAGCCTGGTCCATTAGCAAG	0.423													6	97					0	0	0.001984	0	0
F7	2155	broad.mit.edu	37	13	113770093	113770093	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr13:113770093G>A	uc001vsv.2	+	6	601	c.550G>A	c.(550-552)GGG>AGG	p.G184R	F7_uc010agp.1_Missense_Mutation_p.G177R|F7_uc001vsw.2_Missense_Mutation_p.G162R|F7_uc010tjt.1_Missense_Mutation_p.G115R	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	184	EGF-like 2.				anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	GCTGGCAGACGGGGTGTCCTG	0.597													3	31					0	0	0.009096	0	0
OR4N2	390429	broad.mit.edu	37	14	20296445	20296445	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:20296445C>T	uc010tkv.1	+	1	838	c.838C>T	c.(838-840)CCT>TCT	p.P280S		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGTGATTTTTCCTTTGTTGAA	0.438													5	99					0	0	0.000602	0	0
OR4K1	79544	broad.mit.edu	37	14	20404655	20404655	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:20404655T>A	uc001vwj.1	+	1	830	c.830T>A	c.(829-831)GTT>GAT	p.V277D		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	277	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TTCTACACTGTTTGTACTCCC	0.418													5	168					0	0	0.000602	0	0
SSTR1	6751	broad.mit.edu	37	14	38678783	38678783	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:38678783C>T	uc001wul.1	+	3	806	c.189C>T	c.(187-189)TTC>TTT	p.F63F	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	63	Helical; Name=1; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	TGATCTCTTTCATCTACTCCG	0.617													4	63					0	0	0.009096	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724435	38724435	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:38724435C>T	uc001wum.1	-	1	1140	c.793G>A	c.(793-795)GAC>AAC	p.D265N		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	265	Extracellular (Potential).|EGF-like.					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		CCTCCCAAGTCGTCTAGGCAG	0.642													9	128					0	0	0.008291	0	0
LRFN5	145581	broad.mit.edu	37	14	42356630	42356630	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:42356630C>T	uc001wvm.2	+	3	2000	c.802C>T	c.(802-804)CTT>TTT	p.L268F	LRFN5_uc010ana.2_Missense_Mutation_p.L268F	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	268	Extracellular (Potential).|LRRCT.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TTCTCCTCCACTTTTAACTGG	0.453										HNSCC(30;0.082)			6	129					0	0	0.001984	0	0
SAMD4A	23034	broad.mit.edu	37	14	55236885	55236885	+	Missense_Mutation	SNP	C	T	T	rs146324552		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:55236885C>T	uc001xbb.2	+	8	1658	c.1657C>T	c.(1657-1659)CGG>TGG	p.R553W	SAMD4A_uc001xbc.2_Missense_Mutation_p.R465W|SAMD4A_uc001xbg.2_Missense_Mutation_p.R145W	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	554					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						GAAGCTCTTTCGGTCTTTCCC	0.423													6	91					0	0	0.001168	0	0
C14orf101	54916	broad.mit.edu	37	14	57070588	57070588	+	Missense_Mutation	SNP	C	T	T	rs149705965	byFrequency	TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:57070588C>T	uc001xcm.2	+	4	522	c.400C>T	c.(400-402)CGT>TGT	p.R134C	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xck.2_Missense_Mutation_p.R134C|C14orf101_uc010aot.1_Missense_Mutation_p.R134C|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_Intron	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	134						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		TTCATTTTCTCGTCTAACATG	0.438													5	122					0	0	0.001984	0	0
KCNH5	27133	broad.mit.edu	37	14	63174717	63174717	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:63174717C>T	uc001xfx.2	-	11	2527	c.2476G>A	c.(2476-2478)GAA>AAA	p.E826K	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	826	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTCCAGTCTTCCTTTTTCTCC	0.433													8	91					0	0	0.004482	0	0
GALNTL1	57452	broad.mit.edu	37	14	69792741	69792741	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:69792741G>A	uc010aqu.1	+	5	658	c.565G>A	c.(565-567)GAA>AAA	p.E189K	GALNTL1_uc001xla.1_Missense_Mutation_p.E189K|GALNTL1_uc001xlb.1_Missense_Mutation_p.E189K	NM_020692	NP_065743	Q8N428	GLTL1_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	189	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(1)|central_nervous_system(1)	2				all cancers(60;0.00793)|BRCA - Breast invasive adenocarcinoma(234;0.0174)|OV - Ovarian serous cystadenocarcinoma(108;0.0656)		TGATCGGCGGGAAGGTGAGTC	0.572													7	55					0	0	0.001984	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70712585	70712585	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:70712585C>T	uc010ttg.1	-	1	1934	c.1283G>A	c.(1282-1284)AGG>AAG	p.R428K		NR_003951				SubName: Full=ADAM21-like protein;												0						TATGTGCATCCTTAAATGATA	0.438													6	64					0	0	0.001168	0	0
RGS6	9628	broad.mit.edu	37	14	72976951	72976951	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:72976951G>A	uc001xna.3	+	14	1578	c.1055G>A	c.(1054-1056)CGA>CAA	p.R352Q	RGS6_uc010ttn.1_Missense_Mutation_p.R352Q|RGS6_uc001xmx.3_Missense_Mutation_p.R352Q|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.R352Q|RGS6_uc010ttp.1_Missense_Mutation_p.R283Q|RGS6_uc001xmz.1_Missense_Mutation_p.R213Q	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	352	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CAGTTTCTACGATTCCTGGAG	0.473													9	161					0	0	0.006214	0	0
JDP2	122953	broad.mit.edu	37	14	75904779	75904779	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:75904779C>T	uc010asj.2	+	2	223	c.156C>T	c.(154-156)TTC>TTT	p.F52F	JDP2_uc010tvb.1_Silent_p.F52F|JDP2_uc010tvc.1_Silent_p.F52F|JDP2_uc001xrq.2_Silent_p.F63F	NM_001135047	NP_001128519	Q8WYK2	JDP2_HUMAN	Jun dimerization protein 2 isoform a	52						nucleus	sequence-specific DNA binding				0				BRCA - Breast invasive adenocarcinoma(234;0.0296)		CCTTGCACTTCCTGGAGGTGA	0.607													3	19					0	0	0.004672	0	0
ESRRB	2103	broad.mit.edu	37	14	76948948	76948948	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:76948948G>A	uc001xsq.1	+	5	700	c.633G>A	c.(631-633)AAG>AAA	p.K211K	ESRRB_uc001xsr.2_Silent_p.K211K|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	211						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		CAGTGACCAAGATTGTCTCAT	0.557													5	46					0	0	0.001984	0	0
STON2	85439	broad.mit.edu	37	14	81744382	81744382	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:81744382G>A	uc010tvu.1	-	4	1474	c.1273C>T	c.(1273-1275)CGT>TGT	p.R425C	STON2_uc001xvk.1_Missense_Mutation_p.R425C|STON2_uc010tvt.1_Missense_Mutation_p.R222C	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	425					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		CACCCGTCACGAGGCTGGGAC	0.532													5	118					0	0	0.000602	0	0
FLRT2	23768	broad.mit.edu	37	14	86088459	86088459	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:86088459C>T	uc001xvr.2	+	2	1368	c.601C>T	c.(601-603)CAG>TAG	p.Q201*	FLRT2_uc010atd.2_Nonsense_Mutation_p.Q201*	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	201	Extracellular (Potential).|LRR 6.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CATGGCCTTCCAGAATCTCAC	0.522													5	98					0	0	0.000602	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030295	95030295	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:95030295C>T	uc001ydk.2	+	2	542	c.476C>T	c.(475-477)ACC>ATC	p.T159I	SERPINA4_uc010avd.2_Missense_Mutation_p.T196I|SERPINA4_uc001ydl.2_Missense_Mutation_p.T159I	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	159					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		CTGAATGACACCATGGCCGTC	0.532													5	92					0	0	0.001984	0	0
DICER1	23405	broad.mit.edu	37	14	95584028	95584028	+	Silent	SNP	A	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:95584028A>G	uc001ydw.2	-	10	1622	c.1440T>C	c.(1438-1440)ACT>ACC	p.T480T	DICER1_uc001ydv.2_Silent_p.T470T|DICER1_uc001ydx.2_Silent_p.T480T	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	480	Helicase C-terminal.|Required for interaction with PRKRA and TARBP2.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		TGCCATGTCCAGTTATGAAAT	0.368			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				6	53					0	0	0.001984	0	0
ADAM6	8755	broad.mit.edu	37	14	106321285	106321285	+	RNA	SNP	A	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:106321285A>C	uc010tyt.1	-	3600		c.55866T>G			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CTTGGTGAGGAAGATGCTGGC	0.572													8	181					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	106641603	106641603	+	RNA	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr14:106641603C>T	uc010tyt.1	-	1021		c.24398G>A								Parts of antibodies, mostly variable regions.												0						AGATCTCAGGCTCCTCAGCTC	0.542													6	221					0	0	0.001984	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414053	22414053	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:22414053C>A	uc001yuf.2	+	1	352	c.352C>A	c.(352-354)CTG>ATG	p.L118M		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GGTGGAGCTTCTGATGGTCTT	0.507													8	99					1.12685e-05	1.20351e-05	0.004482	1	0
C15orf2	23742	broad.mit.edu	37	15	24924106	24924106	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:24924106C>T	uc001ywo.2	+	1	3566	c.3092C>T	c.(3091-3093)TCC>TTC	p.S1031F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1031					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GGCCCCAGTTCCACATCAGGA	0.547													5	44					0	0	0.000602	0	0
RYR3	6263	broad.mit.edu	37	15	33855117	33855117	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:33855117C>T	uc001zhi.2	+	11	1122	c.1052C>T	c.(1051-1053)TCT>TTT	p.S351F	RYR3_uc010bar.2_Missense_Mutation_p.S351F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	351	Cytoplasmic (By similarity).|MIR 5.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TATGGAGATTCTGTCTGCTTT	0.448													4	74					0	0	0.009096	0	0
RYR3	6263	broad.mit.edu	37	15	33962623	33962623	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:33962623T>G	uc001zhi.2	+	38	5796	c.5726T>G	c.(5725-5727)GTT>GGT	p.V1909G	RYR3_uc010bar.2_Missense_Mutation_p.V1909G	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1909	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTGCTAGGGGTTCCTTTggaa	0.398													8	30					0	0	0.003163	0	0
CHRM5	1133	broad.mit.edu	37	15	34356204	34356204	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:34356204G>A	uc001zhk.1	+	3	1956	c.1286G>A	c.(1285-1287)CGA>CAA	p.R429Q	CHRM5_uc001zhl.1_Missense_Mutation_p.R429Q	NM_012125	NP_036257	P08912	ACM5_HUMAN	cholinergic receptor, muscarinic 5	429	Cytoplasmic (By similarity).				cell proliferation|inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;1.76e-08)		all cancers(64;4.82e-17)|GBM - Glioblastoma multiforme(113;2.58e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0262)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)	ATGACCAAACGAAAGAGAGTG	0.522													6	53					0	0	0.001984	0	0
RPAP1	26015	broad.mit.edu	37	15	41812678	41812679	+	Silent	DNP	GG	AC	AC			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:41812678_41812679GG>AC	uc001zod.2	-	22	3829_3830	c.3705_3706CC>GT	c.(3703-3708)CCCCTG>CCGTTG	p.1235_1236PL>PL	RPAP1_uc001zoc.2_Silent_p.254_255PL>PL	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	1235_1236	Leu-rich.					nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CGACGCTGCAGGGGCAGGAGGA	0.589													3	24					0	0	0.004672	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42386655	42386655	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:42386655C>T	uc001zox.2	-	1	98	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	1					phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		ACAGGCTCTCCATGCTAGCCC	0.637													4	57					0	0	0.000602	0	0
PYGO1	26108	broad.mit.edu	37	15	55838810	55838810	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:55838810G>A	uc010bfl.1	-	3	727	c.671C>T	c.(670-672)CCT>CTT	p.P224L	PYGO1_uc002adf.1_Missense_Mutation_p.P224L	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	224	Asn-rich.				Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		GTTTGGGGGAGGAATAAAAGA	0.378													5	89					0	0	0.000602	0	0
RFX7	64864	broad.mit.edu	37	15	56386321	56386321	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:56386321G>A	uc010bfn.2	-	9	3605	c.3605C>T	c.(3604-3606)CCA>CTA	p.P1202L	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.P1016L	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	1105					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						ATGAACTTCTGGGGTAACTGG	0.458													5	137					0	0	0.000602	0	0
GCNT3	9245	broad.mit.edu	37	15	59911184	59911184	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:59911184G>A	uc002age.2	+	3	1196	c.747G>A	c.(745-747)AGG>AGA	p.R249R	GCNT3_uc002agd.2_Silent_p.R249R	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	249	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						TGAATGGGAGGAATAGCATGG	0.458													7	146					0	0	0.003080	0	0
IQCH	64799	broad.mit.edu	37	15	67664976	67664976	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:67664976G>A	uc002aqo.1	+	9	1328	c.1281G>A	c.(1279-1281)CTG>CTA	p.L427L	IQCH_uc010ujv.1_Silent_p.L246L|IQCH_uc002aqn.1_Silent_p.L254L|IQCH_uc002aqq.1_Silent_p.L175L|IQCH_uc002aqp.1_Silent_p.L179L	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	427										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		AGAGACACCTGGAGAATTTTC	0.448													4	130					0	0	0.000602	0	0
THSD4	79875	broad.mit.edu	37	15	72021016	72021016	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:72021016G>A	uc002atb.1	+	8	1565	c.1486G>A	c.(1486-1488)GAG>AAG	p.E496K	THSD4_uc002atd.1_Missense_Mutation_p.E170K|THSD4_uc010ukg.1_Missense_Mutation_p.E136K|THSD4_uc002ate.2_Missense_Mutation_p.E136K	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	496						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						CACTGCCGGAGAGTCCTTTTT	0.483													8	171					0	0	0.004482	0	0
SGK269	79834	broad.mit.edu	37	15	77407096	77407096	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:77407096G>A	uc002bcm.2	-	6	4951	c.4643C>T	c.(4642-4644)CCC>CTC	p.P1548L		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1548	Protein kinase.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		AAGCCTAGTGGGATAAGATGA	0.592													4	82					0	0	0.009096	0	0
LOC645752	645752	broad.mit.edu	37	15	78212571	78212571	+	Translation_Start_Site	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:78212571G>A	uc010bky.2	-	8	668	c.-96C>T	c.(-98--94)CACGT>CATGT			NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						CCTGTGTCACGTGTGCGTTCA	0.572													4	40					0	0	0.000602	0	0
CHRNA3	1136	broad.mit.edu	37	15	78885499	78885499	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:78885499C>T	uc002beb.2	-	6	1610	c.1424G>A	c.(1423-1425)CGA>CAA	p.R475Q	CHRNA3_uc002bea.2_RNA|CHRNA5_uc002bdy.2_Silent_p.F437F|CHRNA5_uc002bdz.2_3'UTR|CHRNA3_uc010blg.1_RNA	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	Error:Variant_position_missing_in_P32297_after_alignment					activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						CTTTTCTTTTCGTTTCAATTG	0.318													7	78					0	0	0.003080	0	0
CHRNB4	1143	broad.mit.edu	37	15	78922021	78922021	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:78922021C>T	uc002bed.1	-	5	738	c.626G>A	c.(625-627)AGA>AAA	p.R209K	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Missense_Mutation_p.R27K	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	209	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						CACTGTCCTTCTCCCTGGGAG	0.542													5	117					0	0	0.001168	0	0
RASGRF1	5923	broad.mit.edu	37	15	79339128	79339128	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:79339128G>A	uc002beq.2	-	5	1213	c.838C>T	c.(838-840)CCC>TCC	p.P280S	RASGRF1_uc002bep.2_Missense_Mutation_p.P280S|RASGRF1_uc010blm.1_Missense_Mutation_p.P202S|RASGRF1_uc002ber.3_Missense_Mutation_p.P280S	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	280	DH.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						TGTGTGATGGGAGGCTTCTTG	0.592													12	137					0	0	0.001855	0	0
DET1	55070	broad.mit.edu	37	15	89074606	89074606	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:89074606G>A	uc002bmr.2	-	2	483	c.331C>T	c.(331-333)CAG>TAG	p.Q111*	DET1_uc002bmp.3_RNA|DET1_uc010bnk.2_RNA|DET1_uc002bmq.2_Nonsense_Mutation_p.Q122*	NM_001144074	NP_001137546	Q7L5Y6	DET1_HUMAN	de-etiolated 1 isoform 2	111						nucleus				lung(1)|pancreas(1)	2	Lung NSC(78;0.105)|all_lung(78;0.182)		BRCA - Breast invasive adenocarcinoma(143;0.188)			ACTGACCGCTGGTCATTGCCA	0.532													4	61					0	0	0.009096	0	0
FURIN	5045	broad.mit.edu	37	15	91424025	91424025	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:91424025C>T	uc002bpu.1	+	14	1877	c.1661C>T	c.(1660-1662)ACC>ATC	p.T554I		NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	554					cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			ATTGAAAACACCAGCGAAGCC	0.562													13	299					0	0	0.001855	0	0
SV2B	9899	broad.mit.edu	37	15	91835678	91835678	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:91835678G>A	uc002bqv.2	+	12	2339	c.1948G>A	c.(1948-1950)GGG>AGG	p.G650R	SV2B_uc010uqv.1_Missense_Mutation_p.G499R|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	650	Extracellular (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TTCTTTTGTTGGGATAACCAA	0.498													39	617					0	0	0.009718	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92663826	92663826	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:92663826A>G	uc002bqx.2	+	5	1342	c.1141A>G	c.(1141-1143)AAC>GAC	p.N381D	SLCO3A1_uc002bqy.2_Missense_Mutation_p.N381D|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.N323D	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	381	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			GCAGCAGTTTAACCTCACCAC	0.552													8	198					0	0	0.003080	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92981707	92981707	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:92981707C>T	uc002bra.2	+	4	570	c.415C>T	c.(415-417)CTC>TTC	p.L139F	ST8SIA2_uc002brb.2_Missense_Mutation_p.L118F	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	139	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			GTCCCAGAACCTCTACGAGCT	0.512													4	153					0	0	0.000602	0	0
SPATA8	145946	broad.mit.edu	37	15	97328248	97328248	+	Silent	SNP	G	A	A	rs145348357		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr15:97328248G>A	uc002bue.2	+	3	429	c.219G>A	c.(217-219)AGG>AGA	p.R73R	uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	73								p.R73R(1)		ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			CTCACGGAAGGATCCAAAGGG	0.453													5	115					0	0	0.001168	0	0
RHBDL1	9028	broad.mit.edu	37	16	727045	727045	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:727045G>A	uc002cis.1	+	3	723	c.696G>A	c.(694-696)AAG>AAA	p.K232K	RHBDL1_uc002cir.1_Silent_p.K167K|RHBDL1_uc010uun.1_Silent_p.K167K	NM_003961	NP_003952	O75783	RHBL1_HUMAN	rhomboid protease 1	232					proteolysis|signal transduction	integral to plasma membrane|membrane fraction	calcium ion binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.0218)				AGTACATGAAGAGCCCCCTTG	0.622													4	43					0	0	0.000602	0	0
SRL	6345	broad.mit.edu	37	16	4242622	4242622	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:4242622C>T	uc002cvz.3	-	6	967	c.954G>A	c.(952-954)CTG>CTA	p.L318L	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	777						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						TCACCTGATTCAGGTCTTCTA	0.562													6	131					0	0	0.003080	0	0
GRIN2A	2903	broad.mit.edu	37	16	9862744	9862744	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:9862744G>A	uc002czo.3	-	12	3107	c.2559C>T	c.(2557-2559)TGC>TGT	p.C853C	GRIN2A_uc010uym.1_Silent_p.C853C|GRIN2A_uc010uyn.1_Silent_p.C696C|GRIN2A_uc002czr.3_Silent_p.C853C	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	853	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCCGGTCGGAGCACACGCCCG	0.557													6	114					0	0	0.001984	0	0
ABCC6	368	broad.mit.edu	37	16	16284039	16284039	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:16284039G>A	uc002den.3	-	12	1654	c.1617C>T	c.(1615-1617)TTC>TTT	p.F539F	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Silent_p.F551F	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	539	Helical; Name=10; (By similarity).|ABC transmembrane type-1 1.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TAGACACTTGGAAGGACACCA	0.632													4	87					0	0	0.009096	0	0
TMC5	79838	broad.mit.edu	37	16	19455440	19455440	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:19455440C>T	uc002dgc.3	+	4	1575	c.826C>T	c.(826-828)CGT>TGT	p.R276C	TMC5_uc010vaq.1_Missense_Mutation_p.R276C|TMC5_uc002dgb.3_Missense_Mutation_p.R276C|TMC5_uc010var.1_Missense_Mutation_p.R276C	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	276	Extracellular (Potential).					integral to membrane				skin(1)	1						GCCCTCATTTCGTCACAGGAG	0.438													5	106					0	0	0.001168	0	0
DNAH3	55567	broad.mit.edu	37	16	21073838	21073838	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:21073838G>A	uc010vbe.1	-	25	3685	c.3685C>T	c.(3685-3687)CCA>TCA	p.P1229S		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1229	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGTATGAATGGAACAGTTTCT	0.393													5	88					0	0	0.001168	0	0
VWA3A	146177	broad.mit.edu	37	16	22166930	22166930	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:22166930C>G	uc010vbq.1	+	32	3544	c.3448C>G	c.(3448-3450)CTG>GTG	p.L1150V	VWA3A_uc010bxd.2_RNA|VWA3A_uc002dkg.3_Missense_Mutation_p.L228V|VWA3A_uc010bxe.1_Missense_Mutation_p.L252V	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	1150						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		TTTAAGGATCCTGGCCCAGGA	0.502													5	137					0	0	0.000602	0	0
EEF2K	29904	broad.mit.edu	37	16	22269896	22269896	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:22269896C>T	uc002dki.2	+	10	1596	c.1111C>T	c.(1111-1113)CCC>TCC	p.P371S	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	371					insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		GAGCCGGCCACCCCTGCTCCG	0.557													6	83					0	0	0.001168	0	0
SULT1A2	6799	broad.mit.edu	37	16	28603436	28603436	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:28603436G>A	uc002dqg.1	-	8	1152	c.801C>T	c.(799-801)ACC>ACT	p.T267T	uc010vct.1_Intron|SULT1A2_uc002dqh.1_Silent_p.T267T	NM_177528	NP_803564	P50226	ST1A2_HUMAN	sulfotransferase family, cytosolic, 1A,	267					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine biosynthetic process|catecholamine metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						CCACGGTGAAGGTGGTCTTCC	0.632													3	45					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:32070612A>C	uc002ecv.1	+	1		c.65A>C								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GGTCTCCTGCAAGGCTTCTGG	0.552													3	50					0	0	0.004672	0	0
NOD2	64127	broad.mit.edu	37	16	50759472	50759472	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:50759472G>A	uc002egm.1	+	10	3060	c.2955G>A	c.(2953-2955)TTG>TTA	p.L985L	NOD2_uc010vgq.1_Silent_p.L30L	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	985	LRR 8.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				ATTCAAGTTTGAAAATCCTGA	0.463													5	101					0	0	0.000602	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77465432	77465432	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:77465432C>T	uc002ffc.3	-	3	674	c.255G>A	c.(253-255)AGG>AGA	p.R85R	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	85					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ATCGCTTTTTCCTGCCGTTGT	0.478													6	286					0	0	0.001984	0	0
ADAD2	161931	broad.mit.edu	37	16	84230291	84230291	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:84230291C>T	uc002fhr.2	+	9	1679	c.1565C>T	c.(1564-1566)TCC>TTC	p.S522F	ADAD2_uc002fhq.2_Missense_Mutation_p.S604F|uc002fhs.1_Intron	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	522	A to I editase.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						TGCAAGGCCTCCTTTCTCCGG	0.627													5	144					0	0	0.000602	0	0
ZNF778	197320	broad.mit.edu	37	16	89289675	89289675	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr16:89289675G>A	uc002fmv.2	+	4	567	c.228G>A	c.(226-228)GAG>GAA	p.E76E	ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Silent_p.E6E|ZNF778_uc010vpg.1_Intron	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	76	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		AAAACTACGAGAACCTGGCCT	0.517													4	116					0	0	0.000602	0	0
YWHAE	7531	broad.mit.edu	37	17	1264404	1264404	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:1264404G>A	uc002fsj.2	-	4	712	c.560C>T	c.(559-561)TCC>TTC	p.S187F	YWHAE_uc002fsk.2_Missense_Mutation_p.S165F|YWHAE_uc010vqh.1_RNA|YWHAE_uc010vqi.1_Intron	NM_006761	NP_006752	P62258	1433E_HUMAN	tyrosine 3/tryptophan 5 -monooxygenase	187					apoptosis|G2/M transition of mitotic cell cycle|induction of apoptosis by extracellular signals|interspecies interaction between organisms|intracellular signal transduction|nerve growth factor receptor signaling pathway	cytosol|melanosome	histone deacetylase binding|phosphoserine binding			lung(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(18;0.203)	UCEC - Uterine corpus endometrioid carcinoma (25;0.0887)		ACGGTCAGGGGAATTAAGAAT	0.483													6	70					0	0	0.003080	0	0
SMTNL2	342527	broad.mit.edu	37	17	4496341	4496341	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:4496341G>A	uc002fyf.1	+	3	672	c.605G>A	c.(604-606)CGA>CAA	p.R202Q	SMTNL2_uc002fye.2_Missense_Mutation_p.R58Q	NM_001114974	NP_001108446	Q2TAL5	SMTL2_HUMAN	smoothelin-like 2 isoform 1	202											0				READ - Rectum adenocarcinoma(115;0.0325)		GCCATCACCCGAGTCTCTGAC	0.637													7	47					0	0	0.003080	0	0
CAMTA2	23125	broad.mit.edu	37	17	4877786	4877786	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:4877786A>G	uc002gah.1	-	12	2018	c.1910T>C	c.(1909-1911)TTC>TCC	p.F637S	CAMTA2_uc010cku.1_Missense_Mutation_p.F660S|CAMTA2_uc002gag.1_Missense_Mutation_p.F636S|CAMTA2_uc002gai.1_Missense_Mutation_p.F639S|CAMTA2_uc010ckv.1_Missense_Mutation_p.F284S	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	637					cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						GGACATCCGGAACTGGTTGTC	0.582													3	48					0	0	0.009096	0	0
ALOXE3	59344	broad.mit.edu	37	17	8015436	8015436	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:8015436G>A	uc010cnr.2	-	7	1129	c.759C>T	c.(757-759)TTC>TTT	p.F253F	ALOXE3_uc002gka.2_Silent_p.F409F|ALOXE3_uc010vuo.1_Silent_p.F385F|ALOXE3_uc010vup.1_RNA	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	253	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						TATGGCACCAGAAGATGTTCT	0.532													7	147					0	0	0.003080	0	0
MYH8	4626	broad.mit.edu	37	17	10323365	10323365	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:10323365C>T	uc002gmm.2	-	3	275	c.180G>A	c.(178-180)GGG>GGA	p.G60G	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	60	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CGGTTACTTTCCCTCCTTCTT	0.423									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				9	256					0	0	0.008291	0	0
MYH4	4622	broad.mit.edu	37	17	10348440	10348440	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:10348440C>T	uc002gmn.2	-	37	5430	c.5319G>A	c.(5317-5319)CTG>CTA	p.L1773L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1773	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GTTCCTTCTTCAGCTCCTCAG	0.493													6	139					0	0	0.003080	0	0
MYH2	4620	broad.mit.edu	37	17	10432356	10432356	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:10432356C>T	uc010coi.2	-	27	3523	c.3395G>A	c.(3394-3396)CGG>CAG	p.R1132Q	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.R1132Q|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1132	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CCGGGAGGCCCGCTCTGCCTC	0.602													5	55					0	0	0.001168	0	0
MYH2	4620	broad.mit.edu	37	17	10440596	10440596	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:10440596C>T	uc010coi.2	-	16	1979	c.1851G>A	c.(1849-1851)ATG>ATA	p.M617I	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.M617I|MYH2_uc010coj.2_Missense_Mutation_p.M617I	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	617	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTAGAGTTTTCATTGCAGACT	0.438													8	189					0	0	0.004482	0	0
DNAH9	1770	broad.mit.edu	37	17	11687853	11687853	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:11687853C>T	uc002gne.2	+	41	8126	c.8058C>T	c.(8056-8058)TTC>TTT	p.F2686F	DNAH9_uc010coo.2_Silent_p.F1980F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2686	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCAACATTTTCCAGGTGAGTT	0.468													4	122					0	0	0.001168	0	0
ZNF287	57336	broad.mit.edu	37	17	16470880	16470880	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:16470880G>A	uc002gqi.2	-	2	619	c.166C>T	c.(166-168)CCA>TCA	p.P56S		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	49	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		TCTGGGTATGGAAAATTCCTA	0.458													5	72					0	0	0.001168	0	0
FBXW10	10517	broad.mit.edu	37	17	18673392	18673392	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:18673392G>A	uc002guk.2	+	11	2232	c.2000G>A	c.(1999-2001)GGC>GAC	p.G667D	FBXW10_uc002guj.2_Missense_Mutation_p.G667D|FBXW10_uc002gul.2_Missense_Mutation_p.G696D|FBXW10_uc010cqh.1_Intron	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	667										ovary(1)	1						TTTATTCAGGGCAACAGGTGG	0.463													6	269					0	0	0.004482	0	0
SLC47A1	55244	broad.mit.edu	37	17	19458975	19458975	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:19458975G>A	uc002gvy.1	+	8	797	c.711G>A	c.(709-711)GGG>GGA	p.G237G	SLC47A1_uc010vyy.1_RNA|SLC47A1_uc002gvx.2_Silent_p.G237G|SLC47A1_uc010vyz.1_Silent_p.G214G|SLC47A1_uc010cqp.1_Intron|SLC47A1_uc010cqq.1_Intron|SLC47A1_uc010vza.1_5'UTR|SLC47A1_uc010vzb.1_5'UTR|SLC47A1_uc010vzc.1_5'Flank|SNORA59B_uc002gvz.1_5'Flank	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	237	Helical; (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					ACATCCTCGGGAAAAAACTGC	0.507													6	67					0	0	0.003080	0	0
PHF12	57649	broad.mit.edu	37	17	27254014	27254014	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:27254014G>A	uc002hdg.1	-	3	846	c.316C>T	c.(316-318)CGA>TGA	p.R106*	PHF12_uc010wbb.1_Nonsense_Mutation_p.R88*|PHF12_uc002hdi.1_Nonsense_Mutation_p.R102*|PHF12_uc002hdj.1_Nonsense_Mutation_p.R106*|PHF12_uc010crw.1_5'UTR|PHF12_uc002hdk.1_Nonsense_Mutation_p.R102*|uc002hdl.2_Intron|PHF12_uc002hdh.1_5'Flank	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	106	Interaction with SIN3A.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			ATTACCTTTCGGCGAACAGTG	0.493													4	75					0	0	0.009096	0	0
NF1	4763	broad.mit.edu	37	17	29687605	29687605	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:29687605C>T	uc002hgg.2	+	57	8594	c.8261C>T	c.(8260-8262)TCC>TTC	p.S2754F	NF1_uc002hgh.2_Missense_Mutation_p.S2733F|NF1_uc010cso.2_Missense_Mutation_p.S942F|NF1_uc010wbt.1_Missense_Mutation_p.S232F|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2754					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.S2751fs*27(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGTGAAGAATCCCTCCTGACT	0.448			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			8	96					0	0	0.003080	0	0
ACACA	31	broad.mit.edu	37	17	35601576	35601576	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:35601576G>A	uc002hnm.2	-	21	2750	c.2559C>T	c.(2557-2559)TTC>TTT	p.F853F	ACACA_uc002hnk.2_Silent_p.F775F|ACACA_uc002hnl.2_Silent_p.F795F|ACACA_uc002hnn.2_Silent_p.F853F|ACACA_uc002hno.2_Silent_p.F890F|ACACA_uc010cuz.2_Silent_p.F853F	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	853					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	GGACATAATGGAACACTCGAT	0.488													6	78					0	0	0.001168	0	0
PPP1R1B	84152	broad.mit.edu	37	17	37785468	37785468	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:37785468G>A	uc002hrz.2	+	2	594	c.127G>A	c.(127-129)GAG>AAG	p.E43K	PPP1R1B_uc002hsa.2_Missense_Mutation_p.E43K|PPP1R1B_uc010cvx.2_Missense_Mutation_p.E43K|PPP1R1B_uc002hsb.2_Missense_Mutation_p.E7K|PPP1R1B_uc002hsc.2_Missense_Mutation_p.E7K	NM_032192	NP_115568	Q9UD71	PPR1B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	43					signal transduction	cytosol	protein kinase inhibitor activity|protein phosphatase inhibitor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CCGGCTCTCAGAGCACTCCTC	0.647													6	70					0	0	0.006214	0	0
TNS4	84951	broad.mit.edu	37	17	38643407	38643407	+	Missense_Mutation	SNP	C	T	T	rs150836111	byFrequency	TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:38643407C>T	uc010cxb.2	-	4	1333	c.1169G>A	c.(1168-1170)CGG>CAG	p.R390Q		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	390					apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			TCCTGGGGTCCGCTGGGGTGG	0.617													8	203					0	0	0.003080	0	0
KRTAP3-2	83897	broad.mit.edu	37	17	39155950	39155950	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:39155950G>A	uc002hvs.2	-	1	189	c.156C>T	c.(154-156)CCC>CCT	p.P52P		NM_031959	NP_114165	Q9BYR7	KRA32_HUMAN	keratin associated protein 3.2	52	3 X 5 AA repeats of C-C-X(3).					keratin filament	structural molecule activity				0		Breast(137;0.00043)				GGCAGGGTGGGGGACAGTTGT	0.617													4	63					0	0	0.000602	0	0
GHDC	84514	broad.mit.edu	37	17	40343146	40343146	+	Silent	SNP	G	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:40343146G>T	uc002hzd.2	-	5	1456	c.972C>A	c.(970-972)CTC>CTA	p.L324L	GHDC_uc002hzg.1_Silent_p.L324L|GHDC_uc010wgg.1_Silent_p.L285L|GHDC_uc002hze.3_Silent_p.L324L|GHDC_uc002hzf.3_Silent_p.L324L	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	324						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		CCTTGACTGGGAGCAGCTCGA	0.637													7	82					0.00448238	0.00472305	0.004482	1	0
HOXB1	3211	broad.mit.edu	37	17	46607131	46607131	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:46607131C>T	uc002ink.1	-	2	690	c.684G>A	c.(682-684)CTG>CTA	p.L228L		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	228	Homeobox.					nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGGCCCGGCTCAGGTACTTGT	0.572													8	200					0	0	0.003080	0	0
HOXB5	3215	broad.mit.edu	37	17	46669655	46669655	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:46669655G>A	uc002inr.2	-	2	785	c.726C>T	c.(724-726)TTC>TTT	p.F242F	HOXB3_uc010wlm.1_5'Flank|HOXB3_uc010dbf.2_5'Flank|HOXB3_uc010dbg.2_5'Flank	NM_002147	NP_002138	P09067	HXB5_HUMAN	homeobox B5	242	Homeobox.					nucleus	sequence-specific DNA binding				0						GCCGGTTCTGGAACCAGATCT	0.592													6	129					0	0	0.004482	0	0
PPP1R9B	84687	broad.mit.edu	37	17	48216840	48216840	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:48216840G>A	uc002iqh.3	-	8	1976	c.1973C>T	c.(1972-1974)TCC>TTC	p.S658F		NM_032595	NP_115984	Q96SB3	NEB2_HUMAN	protein phosphatase 1, regulatory subunit 9B	656	Interacts with TGN38 (By similarity).				cell cycle arrest|cell differentiation|cell migration|filopodium assembly|negative regulation of cell growth|nervous system development|regulation of cell growth by extracellular stimulus|regulation of cell proliferation|regulation of exit from mitosis|RNA splicing	adherens junction|cytoskeleton|dendritic spine|filopodium|lamellipodium|nucleoplasm|protein phosphatase type 1 complex|ruffle membrane|synapse	actin binding|protein phosphatase 1 binding|protein phosphatase inhibitor activity				0						GTCCACAGGGGACAGTGCATC	0.617													7	178					0	0	0.004482	0	0
ACE	1636	broad.mit.edu	37	17	61560517	61560517	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:61560517C>T	uc002jau.1	+	9	1492	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F	ACE_uc010wpi.1_Intron|ACE_uc010ddu.1_Silent_p.F307F|ACE_uc002jav.1_5'Flank|ACE_uc010ddv.1_5'Flank|ACE_uc010wpj.1_5'Flank|ACE_uc002jaw.1_5'Flank|ACE_uc010wpk.1_5'Flank	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	490	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GCTACAACTTCGACTGGTGGT	0.617													12	196					0	0	0.002450	0	0
GH1	2688	broad.mit.edu	37	17	61995475	61995475	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:61995475C>T	uc002jdj.2	-	3	255	c.193G>A	c.(193-195)GAA>AAA	p.E65K	GH1_uc002jdi.2_Intron|GH1_uc002jdk.2_Intron|GH1_uc002jdl.2_Intron|GH1_uc002jdm.2_Intron|GH1_uc002jdn.2_Missense_Mutation_p.E65K	NM_000515	NP_000506	P01241	SOMA_HUMAN	growth hormone 1 isoform 1	65					glucose transport|growth hormone receptor signaling pathway|JAK-STAT cascade|positive regulation of activation of JAK2 kinase activity|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of MAP kinase activity|positive regulation of multicellular organism growth|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|response to estradiol stimulus	extracellular space	growth factor activity|growth hormone receptor binding|hormone activity|metal ion binding|prolactin receptor binding				0						TACTTCTGTTCCTTTGGGATA	0.512													7	173					0	0	0.003080	0	0
HELZ	9931	broad.mit.edu	37	17	65124948	65124948	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:65124948G>A	uc010wqk.1	-	24	3396	c.3209C>T	c.(3208-3210)GCC>GTC	p.A1070V	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.A1069V	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					ATGACACAGGGCAATAAACCG	0.343													4	101					0	0	0.000602	0	0
KIAA0195	9772	broad.mit.edu	37	17	73491074	73491074	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:73491074G>A	uc002jnz.3	+	20	2962	c.2687G>A	c.(2686-2688)AGC>AAC	p.S896N	KIAA0195_uc010wsa.1_Missense_Mutation_p.S906N|KIAA0195_uc010wsb.1_Missense_Mutation_p.S536N|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	896					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCCCCCTCCAGCCCCAGCCAC	0.622													8	101					0	0	0.003080	0	0
P4HB	5034	broad.mit.edu	37	17	79804386	79804386	+	Silent	SNP	G	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr17:79804386G>C	uc002kbn.1	-	7	1172	c.975C>G	c.(973-975)ACC>ACG	p.T325T	P4HB_uc002kbl.1_Silent_p.T2T|P4HB_uc002kbm.1_Silent_p.T2T	NM_000918	NP_000909	P07237	PDIA1_HUMAN	prolyl 4-hydroxylase, beta subunit precursor	325					cell redox homeostasis|glycerol ether metabolic process|lipid metabolic process|lipoprotein metabolic process|peptidyl-proline hydroxylation to 4-hydroxy-L-proline	cell surface|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|extracellular region|melanosome|plasma membrane	electron carrier activity|procollagen-proline 4-dioxygenase activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0509)			GCTTGTACTTGGTCATCTCCT	0.612													5	87					0	0	0.000602	0	0
EMILIN2	84034	broad.mit.edu	37	18	2892287	2892287	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr18:2892287G>A	uc002kln.2	+	4	2321	c.2162G>A	c.(2161-2163)GGA>GAA	p.G721E		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	721					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		TCTATCTCAGGAAATCTTCAG	0.542													4	90					0	0	0.009096	0	0
MC5R	4161	broad.mit.edu	37	18	13826253	13826253	+	Silent	SNP	C	T	T	rs141625505		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr18:13826253C>T	uc010xaf.1	+	1	489	c.489C>T	c.(487-489)ATC>ATT	p.I163I		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	163	Helical; Name=4; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						GGGCCATCATCGCCGGCATCT	0.567													10	257					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	18	14184029	14184029	+	Silent	SNP	T	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr18:14184029T>C	uc010xag.1	+	3	718	c.420T>C	c.(418-420)GCT>GCC	p.A140A	uc002ksv.1_Missense_Mutation_p.L19P					RecName: Full=Putative ankyrin repeat domain-containing protein 20A5;																		TCCATTATGCTGTGTATAGTG	0.438													6	189					0	0	0.004482	0	0
KLHL14	57565	broad.mit.edu	37	18	30322008	30322008	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr18:30322008G>A	uc002kxm.1	-	3	1340	c.952C>T	c.(952-954)CGC>TGC	p.R318C	KLHL14_uc010dmd.1_5'UTR	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	318						cytosol|endoplasmic reticulum membrane				ovary(1)	1						TTGTTAGAGCGAATTCTTCAC	0.428													4	75					0	0	0.000602	0	0
ALPK2	115701	broad.mit.edu	37	18	56203320	56203320	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr18:56203320C>T	uc002lhj.3	-	5	4313	c.4099G>A	c.(4099-4101)GAA>AAA	p.E1367K	ALPK2_uc002lhk.1_Missense_Mutation_p.E698K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1367							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TTAACATTTTCCTTCCCTCCA	0.453													4	79					0	0	0.000602	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60241404	60241404	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr18:60241404G>A	uc002lip.3	+	13	2090	c.2090G>A	c.(2089-2091)GGA>GAA	p.G697E	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Missense_Mutation_p.G167E	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	697					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						GCTTCACTAGGAAATGAGAAT	0.423													11	142					0	0	0.013537	0	0
SERPINB13	5275	broad.mit.edu	37	18	61262319	61262319	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr18:61262319C>T	uc002ljc.2	+	7	840	c.672C>T	c.(670-672)TTC>TTT	p.F224F	SERPINB13_uc002ljd.2_Silent_p.F88F|SERPINB13_uc010xep.1_Silent_p.F233F|SERPINB13_uc010xeq.1_Silent_p.F45F|SERPINB13_uc010xer.1_Silent_p.F45F	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	224					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						GCTTCACTTTCCTGGAGGACT	0.433													4	60					0	0	0.001168	0	0
HMHA1	23526	broad.mit.edu	37	19	1079932	1079932	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:1079932G>A	uc002lqz.1	+	13	1749	c.1518G>A	c.(1516-1518)ACG>ACA	p.T506T	HMHA1_uc010xgd.1_Silent_p.T522T|HMHA1_uc010xge.1_Silent_p.T346T|HMHA1_uc002lra.1_Silent_p.T346T|HMHA1_uc002lrb.1_Silent_p.T389T|HMHA1_uc002lrc.1_Silent_p.T141T|HMHA1_uc002lrd.1_5'Flank|HMHA1_uc010dsd.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	506					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCAGGCCACGATCTCCTACT	0.677													8	114					0	0	0.008291	0	0
DOT1L	84444	broad.mit.edu	37	19	2180750	2180750	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:2180750C>T	uc002lvb.3	+	2	156	c.120C>T	c.(118-120)ACC>ACT	p.T40T		NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	40						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCATCGAGACCATCCGGTGAG	0.562													4	44					0	0	0.000602	0	0
TJP3	27134	broad.mit.edu	37	19	3735929	3735929	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:3735929C>T	uc010xhv.1	+	9	1222	c.1222C>T	c.(1222-1224)CGT>TGT	p.R408C	TJP3_uc010xhs.1_Missense_Mutation_p.R375C|TJP3_uc010xht.1_Missense_Mutation_p.R339C|TJP3_uc010xhu.1_Missense_Mutation_p.R384C|TJP3_uc010xhw.1_Missense_Mutation_p.R394C	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	389						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CATGGAGGATCGTGGGTATGT	0.527													5	93					0	0	0.001168	0	0
C3	718	broad.mit.edu	37	19	6696669	6696669	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:6696669G>A	uc002mfm.2	-	22	2860	c.2798C>T	c.(2797-2799)CCG>CTG	p.P933L		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	933					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GATTCCTTCCGGCTACGCAGT	0.572													7	172					0	0	0.003080	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841876	8841876	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:8841876C>T	uc010xkg.1	+	1	486	c.486C>T	c.(484-486)ATC>ATT	p.I162I		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						AGACCTCCATCACCCTGCATT	0.552													10	126					0	0	0.010729	0	0
ZNF558	148156	broad.mit.edu	37	19	8922347	8922347	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:8922347G>A	uc002mkn.1	-	6	1049	c.819C>T	c.(817-819)TTC>TTT	p.F273F	ZNF558_uc010xkh.1_Silent_p.F202F|ZNF558_uc010dwg.1_Silent_p.F273F	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	273	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						ACCTTGTGCTGAAAGCTTTTC	0.458													5	98					0	0	0.000602	0	0
MUC16	94025	broad.mit.edu	37	19	9003659	9003659	+	Silent	SNP	G	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:9003659G>T	uc002mkp.2	-	49	40185	c.39981C>A	c.(39979-39981)CTC>CTA	p.L13327L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.L144L|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13329	Extracellular (Potential).|SEA 9.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTAAAATTGAGGGTGAATG	0.473													5	153					1.23904e-05	1.32108e-05	0.000602	1	0
MUC16	94025	broad.mit.edu	37	19	9026227	9026227	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:9026227C>T	uc002mkp.2	-	14	36963	c.36759G>A	c.(36757-36759)AGG>AGA	p.R12253R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12255	SEA 2.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTTGAACTTCCTGGAGCCAG	0.562													6	166					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9060704	9060704	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:9060704G>A	uc002mkp.2	-	3	26946	c.26742C>T	c.(26740-26742)ATC>ATT	p.I8914I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8916	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATCTGAGGTGATATTCATAC	0.498													6	164					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9068069	9068069	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:9068069G>A	uc002mkp.2	-	3	19581	c.19377C>T	c.(19375-19377)ACC>ACT	p.T6459T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6461	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCAGGTAAGGGTACCCTGTG	0.483													15	194					0	0	0.004990	0	0
MUC16	94025	broad.mit.edu	37	19	9087697	9087697	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:9087697G>A	uc002mkp.2	-	1	4322	c.4118C>T	c.(4117-4119)TCA>TTA	p.S1373L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1373	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGATTGGGTGAACTTGAGAT	0.468													6	102					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9090172	9090172	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:9090172G>A	uc002mkp.2	-	1	1847	c.1643C>T	c.(1642-1644)CCC>CTC	p.P548L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	548	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGATGCTGGGGGTCTCTCTGT	0.522													4	62					0	0	0.000602	0	0
CNN1	1264	broad.mit.edu	37	19	11657516	11657516	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:11657516C>T	uc002msc.1	+	3	376	c.212C>T	c.(211-213)TCC>TTC	p.S71F	CNN1_uc010xmb.1_Missense_Mutation_p.S21F|CNN1_uc010xmc.1_Missense_Mutation_p.S21F	NM_001299	NP_001290	P51911	CNN1_HUMAN	calponin 1, basic, smooth muscle	71	CH.				actomyosin structure organization|regulation of smooth muscle contraction	cytoskeleton	actin binding|calmodulin binding				0						CAGCCAGGCTCCGTGAAGAAG	0.463													4	102					0	0	0.009096	0	0
ZNF490	57474	broad.mit.edu	37	19	12691589	12691589	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:12691589G>A	uc002mtz.2	-	5	1429	c.1300C>T	c.(1300-1302)CGA>TGA	p.R434*		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	434	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCATGGATTCGAAAGTGAGTG	0.413													4	87					0	0	0.000602	0	0
CC2D1A	54862	broad.mit.edu	37	19	14038819	14038819	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:14038819C>T	uc002mxo.2	+	23	2729	c.2430C>T	c.(2428-2430)GAC>GAT	p.D810D	CC2D1A_uc002mxp.2_Silent_p.D810D|CC2D1A_uc010dzh.2_Silent_p.D379D	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	810					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			TGGTCATTGACCCTGTGCCGG	0.657													5	117					0	0	0.000602	0	0
CYP4F8	11283	broad.mit.edu	37	19	15728897	15728897	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:15728897C>T	uc002nbi.2	+	3	349	c.285C>T	c.(283-285)ATC>ATT	p.I95I	CYP4F8_uc010xoi.1_Silent_p.I95I|CYP4F8_uc010xoj.1_Intron	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	95					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						TGGGCCCCATCACTCCCATCA	0.582													5	111					0	0	0.000602	0	0
CYP4F12	66002	broad.mit.edu	37	19	15791310	15791310	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:15791310A>G	uc002nbl.2	+	5	567	c.506A>G	c.(505-507)AAG>AGG	p.K169R	CYP4F12_uc010xoo.1_Missense_Mutation_p.K169R|CYP4F12_uc010xop.1_3'UTR	NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					ATCTTCAACAAGAGTGCAAAC	0.463													5	50					0	0	0.000602	0	0
OR10H4	126541	broad.mit.edu	37	19	16059904	16059904	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:16059904C>T	uc010xov.1	+	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCATCTTGTTCCTGCTGTACC	0.483													9	187					0	0	0.004482	0	0
UNC13A	23025	broad.mit.edu	37	19	17759387	17759387	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:17759387C>T	uc002nhd.2	-	16	1933	c.1933G>A	c.(1933-1935)GAA>AAA	p.E645K		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	557	Phorbol-ester/DAG-type.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GTCCACACTTCGAAGTTGTGT	0.607													4	65					0	0	0.001168	0	0
NR2C2AP	126382	broad.mit.edu	37	19	19312774	19312774	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:19312774A>G	uc002nlx.2	-	5	749	c.380T>C	c.(379-381)GTG>GCG	p.V127A	NR2C2AP_uc010xqq.1_RNA|NR2C2AP_uc002nly.2_3'UTR	NM_176880	NP_795361	Q86WQ0	NR2CA_HUMAN	TR4 orphan receptor associated protein TRA16	127					cell adhesion|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm				ovary(1)	1			Epithelial(12;0.00235)			GTAGATGACCACACGGCCAAA	0.572													3	65					0	0	0.004672	0	0
LPAR2	9170	broad.mit.edu	37	19	19738063	19738063	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:19738063C>T	uc002nnb.3	-	2	170	c.31G>A	c.(31-33)GAG>AAG	p.E11K	LPAR2_uc002nna.3_Missense_Mutation_p.E11K|LPAR2_uc002nnc.3_Missense_Mutation_p.E11K	NM_004720	NP_004711	Q9HBW0	LPAR2_HUMAN	lysophosphatidic acid receptor 2	11	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	cell surface|integral to plasma membrane	LIM domain binding|lipid binding			ovary(1)|breast(1)	2						CCGATGGTCTCGTTGTAGTAG	0.582													7	105					0	0	0.004482	0	0
ZNF536	9745	broad.mit.edu	37	19	30934641	30934641	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:30934641G>A	uc002nsu.1	+	2	310	c.172G>A	c.(172-174)GAG>AAG	p.E58K	ZNF536_uc010edd.1_Missense_Mutation_p.E58K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	58					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CAACCCCGAGGAGAAGCCCCC	0.672													4	78					0	0	0.009096	0	0
KIAA0355	9710	broad.mit.edu	37	19	34833122	34833122	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:34833122C>T	uc002nvd.3	+	10	3142	c.2283C>T	c.(2281-2283)TCC>TCT	p.S761S		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	761										ovary(1)	1	Esophageal squamous(110;0.162)					ATGGCTCATCCCAGCAGCCAG	0.582													7	150					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	19	35862375	35862375	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:35862375C>T	uc002nze.2	+	1	119	c.114C>T	c.(112-114)GTC>GTT	p.V38V		NM_005304	NP_005295			free fatty acid receptor 3																		CCCTGGTGGTCTTCGTGGGCA	0.642													5	52					0	0	0.001984	0	0
SUPT5H	6829	broad.mit.edu	37	19	39964610	39964610	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:39964610G>A	uc002olo.3	+	26	2679	c.2500G>A	c.(2500-2502)GAA>AAA	p.E834K	SUPT5H_uc002olp.3_Missense_Mutation_p.E834K|SUPT5H_uc002olq.3_Missense_Mutation_p.E830K|SUPT5H_uc002oln.3_Missense_Mutation_p.E834K|SUPT5H_uc002olr.3_Missense_Mutation_p.E834K|SUPT5H_uc002ols.1_Missense_Mutation_p.E457K	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	834					cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CAGGGCTGAGGAAGAATATGA	0.562											OREG0025462	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	101					0	0	0.001984	0	0
HIPK4	147746	broad.mit.edu	37	19	40895647	40895647	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:40895647C>T	uc002onp.2	-	1	448	c.163G>A	c.(163-165)GAG>AAG	p.E55K		NM_144685	NP_653286	Q8NE63	HIPK4_HUMAN	homeodomain interacting protein kinase 4	55	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2			Lung(22;4.95e-05)|LUSC - Lung squamous cell carcinoma(20;0.000292)			AGCTTCAGCTCGTTCTTGATG	0.592													5	148					0	0	0.000602	0	0
CEACAM6	4680	broad.mit.edu	37	19	42265234	42265234	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:42265234G>A	uc002orm.2	+	3	651	c.502G>A	c.(502-504)GAA>AAA	p.E168K		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	168	Ig-like C2-type 1.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CTTCACCTGTGAACCTGAGGT	0.567													12	183					0	0	0.013537	0	0
PSG8	440533	broad.mit.edu	37	19	43258618	43258618	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:43258618C>T	uc002ouo.2	-	5	1208	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_Silent_p.G209G|PSG8_uc002ouh.2_Silent_p.G370G|PSG8_uc010ein.2_Silent_p.G248G|PSG8_uc002ouj.3_Silent_p.G152G|PSG8_uc002ouk.3_Silent_p.G209G|PSG8_uc002oul.3_Silent_p.G370G|PSG8_uc002oum.3_Silent_p.G277G|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Silent_p.G277G	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	370	Ig-like C2-type 3.					extracellular region					0		Prostate(69;0.00899)				GCTGAAACTTCCCATTAATTG	0.463													15	258					0	0	0.006122	0	0
ZFP112	7771	broad.mit.edu	37	19	44901422	44901422	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:44901422C>T	uc010xwz.1	-	2	45	c.-42_splice	c.e2-1		ZNF285_uc010xxa.1_Splice_Site|ZNF285_uc002ozd.3_Splice_Site	NM_013380	NP_037512	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 2						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						AAAAGCAGAACTGCAAAGAAG	0.378													4	70					0	0	0.009096	0	0
ZNF180	7733	broad.mit.edu	37	19	44980972	44980972	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:44980972G>A	uc002ozf.3	-	5	2008	c.1726C>T	c.(1726-1728)CCG>TCG	p.P576S	ZNF180_uc002ozh.3_Missense_Mutation_p.P233S|ZNF180_uc002ozi.3_Missense_Mutation_p.P549S|ZNF180_uc002ozg.3_Missense_Mutation_p.P575S|ZNF180_uc010ejm.2_Missense_Mutation_p.P551S	NM_013256	NP_037388	Q9UJW8	ZN180_HUMAN	zinc finger protein 180	576					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.P576L(1)		ovary(2)	2		Prostate(69;0.0435)				CATTCATACGGTTTTTCCCCA	0.408													6	68					0	0	0.001168	0	0
GPR77	27202	broad.mit.edu	37	19	47844136	47844136	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:47844136C>T	uc010ela.1	+	2	298	c.80C>T	c.(79-81)GCC>GTC	p.A27V	GPR77_uc002pgk.1_Missense_Mutation_p.A27V	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	27	Extracellular (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity			ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		CTGGATGGCGCCTGCCTGGCC	0.662													5	106					0	0	0.001168	0	0
SULT2A1	6822	broad.mit.edu	37	19	48389444	48389444	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:48389444C>T	uc002phr.2	-	1	211	c.71G>A	c.(70-72)AGA>AAA	p.R24K		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	24					3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		ACGTACTTTTCTTAAGGTTTC	0.428													8	109					0	0	0.004482	0	0
IZUMO1	284359	broad.mit.edu	37	19	49249038	49249038	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:49249038G>A	uc002pkj.2	-	2	627	c.79C>T	c.(79-81)CCG>TCG	p.P27S	IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	27	Extracellular (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		ACGACAGACGGGTCACATATA	0.587													9	105					0	0	0.006214	0	0
TULP2	7288	broad.mit.edu	37	19	49388786	49388786	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:49388786C>T	uc002pkz.2	-	9	1131	c.980G>A	c.(979-981)AGG>AAG	p.R327K		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	327					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		AGTTTTGCTCCTTCTTCTCTT	0.433													7	57					0	0	0.001984	0	0
TRPM4	54795	broad.mit.edu	37	19	49671280	49671280	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:49671280C>T	uc002pmw.2	+	4	446	c.374C>T	c.(373-375)TCG>TTG	p.S125L	TRPM4_uc010emu.2_Missense_Mutation_p.S125L|TRPM4_uc010yak.1_Intron|TRPM4_uc002pmx.2_Intron|TRPM4_uc010emv.2_Intron|TRPM4_uc010yal.1_Intron	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	125	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CTGGGGGGATCGGGGGGCCCC	0.677													10	139					0	0	0.006214	0	0
SLC6A16	28968	broad.mit.edu	37	19	49797112	49797112	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:49797112G>A	uc002pmz.2	-	9	1824	c.1590C>T	c.(1588-1590)TTC>TTT	p.F530F	SLC6A16_uc002pna.2_Silent_p.F530F	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	530						integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		GTTTCCTGAAGAAAGAGAAGG	0.478													10	197					0	0	0.010729	0	0
KLK12	43849	broad.mit.edu	37	19	51534106	51534106	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:51534106G>A	uc002pvg.1	-	4	649	c.529C>T	c.(529-531)CCC>TCC	p.P177S	KLK11_uc002pvf.1_5'Flank|KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Missense_Mutation_p.P67S|KLK12_uc010ycr.1_Missense_Mutation_p.P67S|KLK12_uc010ycs.1_Missense_Mutation_p.P67S|KLK12_uc002pvh.1_Missense_Mutation_p.P177S|KLK12_uc002pvi.1_Missense_Mutation_p.P177S|KLK12_uc002pvj.1_Missense_Mutation_p.S90F	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	177	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		ATTCTCCCGGGATACACACCA	0.627													7	154					0	0	0.006214	0	0
ZNF616	90317	broad.mit.edu	37	19	52619219	52619219	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:52619219G>A	uc002pym.2	-	4	1481	c.1198C>T	c.(1198-1200)CGA>TGA	p.R400*	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	400	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		TGAATTCGTCGATGCACTGCA	0.418													9	117					0	0	0.004482	0	0
ZNF611	81856	broad.mit.edu	37	19	53209792	53209792	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:53209792G>A	uc002pzz.2	-	7	833	c.516C>T	c.(514-516)ATC>ATT	p.I172I	ZNF611_uc010eqc.2_Silent_p.I102I|ZNF611_uc010ydo.1_Silent_p.I102I|ZNF611_uc010ydr.1_Silent_p.I103I|ZNF611_uc010ydp.1_Silent_p.I172I|ZNF611_uc010ydq.1_Silent_p.I172I|ZNF611_uc002qaa.3_Silent_p.I102I	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		TTTCACCTTTGATCTGAAATA	0.403													6	134					0	0	0.001168	0	0
VN1R2	317701	broad.mit.edu	37	19	53762361	53762361	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:53762361G>A	uc002qbi.2	+	1	817	c.733G>A	c.(733-735)GAT>AAT	p.D245N		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	245	Extracellular (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		AAAGAAAGGAGATTTGGGATA	0.428													5	73					0	0	0.000602	0	0
VN1R2	317701	broad.mit.edu	37	19	53762788	53762788	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:53762788G>A	uc002qbi.2	+	1	1244	c.1160G>A	c.(1159-1161)CGA>CAA	p.R387Q		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	387	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		AGAAATAGACGATTCTTTCAT	0.438													7	107					0	0	0.001984	0	0
LILRA1	11024	broad.mit.edu	37	19	55107142	55107142	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:55107142C>T	uc002qgh.1	+	6	882	c.700C>T	c.(700-702)CCT>TCT	p.P234S	LILRA2_uc010yfg.1_Missense_Mutation_p.P232S|LILRA1_uc010yfh.1_Missense_Mutation_p.P234S	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	234	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GCAGCCAGGTCCTATAGTGGC	0.537													5	109					0	0	0.001984	0	0
NLRP7	199713	broad.mit.edu	37	19	55450557	55450557	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:55450557G>A	uc002qih.3	-	4	1706	c.1630C>T	c.(1630-1632)CCG>TCG	p.P544S	NLRP7_uc002qig.3_Missense_Mutation_p.P544S|NLRP7_uc002qii.3_Missense_Mutation_p.P544S|NLRP7_uc010esk.2_Missense_Mutation_p.P544S|NLRP7_uc010esl.2_Missense_Mutation_p.P572S	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	544							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TTGATGTCCGGTGACATCCGG	0.512													5	76					0	0	0.000602	0	0
NLRP4	147945	broad.mit.edu	37	19	56369305	56369305	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:56369305C>T	uc002qmd.3	+	3	968	c.546C>T	c.(544-546)TTC>TTT	p.F182F	NLRP4_uc002qmf.2_Silent_p.F107F|NLRP4_uc010etf.2_Silent_p.F13F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	182	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GGGATAGGTTCCTGTACACGT	0.502													9	123					0	0	0.006214	0	0
NLRP4	147945	broad.mit.edu	37	19	56370010	56370010	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:56370010C>G	uc002qmd.3	+	3	1673	c.1251C>G	c.(1249-1251)GAC>GAG	p.D417E	NLRP4_uc002qmf.2_Missense_Mutation_p.D342E|NLRP4_uc010etf.2_Missense_Mutation_p.D248E	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	417	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TTTGTGAAGACGACCTCCGGA	0.587													6	110					0	0	0.001984	0	0
NLRP5	126206	broad.mit.edu	37	19	56539771	56539771	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:56539771C>T	uc002qmj.2	+	7	2172	c.2172C>T	c.(2170-2172)TCC>TCT	p.S724S	NLRP5_uc002qmi.2_Silent_p.S705S	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	724	LRR 1.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TAGCATCTTCCTTCTGCCTCC	0.488													9	180					0	0	0.008291	0	0
ZIM3	114026	broad.mit.edu	37	19	57648268	57648268	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:57648268C>T	uc002qnz.1	-	4	600	c.214G>A	c.(214-216)GAG>AAG	p.E72K		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	72	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGCACTTCCTCTTCCTCCAAC	0.517													5	87					0	0	0.000602	0	0
ZNF543	125919	broad.mit.edu	37	19	57838039	57838039	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr19:57838039G>T	uc002qoi.1	+	3	529	c.184G>T	c.(184-186)GAT>TAT	p.D62Y		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	62	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTACCAGTTGGATCACAGACA	0.498													6	73					1.06961e-07	1.14823e-07	0.003080	1	0
Unknown	0	broad.mit.edu	37	2	905528	905528	+	RNA	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:905528C>T	uc010ewg.2	-	1		c.55G>A			uc010ewh.1_Missense_Mutation_p.E140K					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		TGTTTCATTTCCTCCCGGCCT	0.612													8	263					0	0	0.008291	0	0
APOB	338	broad.mit.edu	37	2	21229891	21229891	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:21229891G>A	uc002red.2	-	26	9977	c.9849C>T	c.(9847-9849)TTC>TTT	p.F3283F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3283					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTAGGATGGAGAAACTAGGCA	0.463													18	538					0	0	0.007413	0	0
GALNT14	79623	broad.mit.edu	37	2	31215756	31215756	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:31215756C>T	uc002rnr.2	-	2	866	c.247G>A	c.(247-249)GAG>AAG	p.E83K	GALNT14_uc002rnq.2_Missense_Mutation_p.E63K|GALNT14_uc002rns.2_Intron|GALNT14_uc010ymr.1_Missense_Mutation_p.E48K|GALNT14_uc010ezo.1_Missense_Mutation_p.E83K|GALNT14_uc010ezp.1_Missense_Mutation_p.E54K	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	83	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					CGCTCACTCTCCCGCTGGTTG	0.562													5	88					0	0	0.000602	0	0
FAM82A1	151393	broad.mit.edu	37	2	38201255	38201255	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:38201255G>A	uc002rql.2	+	3	648	c.525G>A	c.(523-525)GAG>GAA	p.E175E	FAM82A1_uc002rqn.1_Silent_p.E353E|FAM82A1_uc002rqk.1_Silent_p.E30E|FAM82A1_uc002rqm.2_Silent_p.E30E	NM_144713	NP_653314	Q96LZ7	RMD2_HUMAN	family with sequence similarity 82, member A1	175						cytoplasm|integral to membrane|microtubule|spindle pole	binding			ovary(1)	1						CACGTGTAGAGGAATTAAATT	0.378													3	47					0	0	0.004672	0	0
THADA	63892	broad.mit.edu	37	2	43520263	43520263	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:43520263G>A	uc002rsw.3	-	32	4880	c.4528C>T	c.(4528-4530)CCA>TCA	p.P1510S	THADA_uc010far.2_Missense_Mutation_p.P705S|THADA_uc002rsx.3_Missense_Mutation_p.P1510S|THADA_uc002rsy.3_RNA	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1510							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GGCAGGCCTGGCACCTTGAAG	0.572													16	525					0	0	0.007413	0	0
HK2	3099	broad.mit.edu	37	2	75115072	75115072	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:75115072C>T	uc002snd.2	+	16	4188	c.2262C>T	c.(2260-2262)GTC>GTT	p.V754V		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	754	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						GTGAGATTGTCCGTAACATTC	0.473													4	109					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	2	89475915	89475915	+	RNA	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:89475915C>T	uc010ytr.1	-	28		c.3566G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCCACTGAATCTGTCTGGGAC	0.493													8	143					0	0	0.003080	0	0
RGPD3	653489	broad.mit.edu	37	2	107050819	107050819	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:107050819C>T	uc010ywi.1	-	15	2127	c.2070G>A	c.(2068-2070)AGG>AGA	p.R690R		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	690					intracellular transport		binding			ovary(1)	1						CTTCTGCCTTCCTGTGAAAAA	0.279													4	86					0	0	0.001168	0	0
RGPD5	84220	broad.mit.edu	37	2	113147662	113147662	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:113147662G>A	uc002ths.1	-	20	2937	c.2860C>T	c.(2860-2862)CGG>TGG	p.R954W	RGPD8_uc010fkk.1_Missense_Mutation_p.R814W|RGPD5_uc002tht.1_Missense_Mutation_p.R205W	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	954					intracellular transport	cytoplasm	binding				0						CCCTTCTTCCGGCCCCTAATA	0.413													10	259					0	0	0.006214	0	0
IWS1	55677	broad.mit.edu	37	2	128253686	128253686	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:128253686C>T	uc002ton.2	-	7	1907	c.1604G>A	c.(1603-1605)CGA>CAA	p.R535Q	IWS1_uc010yzl.1_RNA	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	535					transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		GCTCTTTTTTCGCTGCAACAT	0.413													10	185					0	0	0.006214	0	0
HS6ST1	9394	broad.mit.edu	37	2	129026429	129026429	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:129026429G>A	uc002tpt.3	-	2	577	c.543C>T	c.(541-543)ATC>ATT	p.I181I		NM_004807	NP_004798	O60243	H6ST1_HUMAN	heparan sulfate 6-O-sulfotransferase 1	181	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	integral to plasma membrane	sulfotransferase activity			pancreas(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.117)		GTAGCAGGGTGATGTAGTAGA	0.612													6	35					0	0	0.001168	0	0
THSD7B	80731	broad.mit.edu	37	2	137814587	137814587	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:137814587G>A	uc002tva.1	+	2	644	c.644G>A	c.(643-645)GGA>GAA	p.G215E	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.G105E	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CTTAAGGTTGGACCATGGAGT	0.428													6	159					0	0	0.001168	0	0
NEB	4703	broad.mit.edu	37	2	152506779	152506779	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:152506779G>A	uc010fnx.2	-	54	7533	c.7342C>T	c.(7342-7344)CGT>TGT	p.R2448C		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2448	Nebulin 65.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGAGGCTGACGATATTTCTTC	0.463													4	73					0	0	0.009096	0	0
CYTIP	9595	broad.mit.edu	37	2	158272435	158272435	+	Silent	SNP	C	T	T	rs141179083	byFrequency	TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:158272435C>T	uc002tzj.1	-	8	906	c.834G>A	c.(832-834)ACG>ACA	p.T278T	CYTIP_uc010zcl.1_Silent_p.T172T	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	278	Ser-rich.			T -> Q (in Ref. 5; AAA16575).	regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						CATCTGTACTCGTCTGCCGAC	0.542													6	72					0	0	0.001984	0	0
SCN1A	6323	broad.mit.edu	37	2	166848405	166848405	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:166848405C>T	uc010zcz.1	-	26	5365	c.5347G>A	c.(5347-5349)GAA>AAA	p.E1783K		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1794	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GCACTTTCTTCAGTAGCAACA	0.418													7	95					0	0	0.001984	0	0
SCN1A	6323	broad.mit.edu	37	2	166901655	166901655	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:166901655G>A	uc010zcz.1	-	10	1578	c.1560C>T	c.(1558-1560)TTC>TTT	p.F520F	SCN1A_uc002udo.3_Silent_p.F389F|SCN1A_uc010fpk.2_Silent_p.F389F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	520						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CAGATTTTTGGAATTCATCCT	0.438													6	179					0	0	0.003080	0	0
SCN7A	6332	broad.mit.edu	37	2	167262274	167262274	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:167262274C>T	uc002udu.1	-	25	4992	c.4865G>A	c.(4864-4866)CGA>CAA	p.R1622Q		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1622					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						CTCTTGTTTTCGTTTCAAAGT	0.363													7	173					0	0	0.001984	0	0
LRP2	4036	broad.mit.edu	37	2	170063502	170063502	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:170063502C>T	uc002ues.2	-	39	6941	c.6728G>A	c.(6727-6729)CGA>CAA	p.R2243Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2243	LDL-receptor class B 22.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GCCATCACTTCGGTCCACTGC	0.463													5	138					0	0	0.001168	0	0
KLHL23	151230	broad.mit.edu	37	2	170592502	170592502	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:170592502G>A	uc002ufh.1	+	4	1316	c.978G>A	c.(976-978)GGG>GGA	p.G326G	KLHL23_uc002ufi.1_Silent_p.G326G	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	326	Kelch 2.										0						ATGTAACTGGGGGCTACAGGA	0.428													4	146					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179616599	179616599	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:179616599G>A	uc002unb.2	-	46	10752	c.10528C>T	c.(10528-10530)CTT>TTT	p.L3510F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAAATGTAAGTTTCTGGGTA	0.373													6	116					0	0	0.001168	0	0
PDE1A	5136	broad.mit.edu	37	2	183070702	183070702	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:183070702C>T	uc002uos.2	-	9	999	c.915G>A	c.(913-915)ATG>ATA	p.M305I	PDE1A_uc010zfp.1_Missense_Mutation_p.M201I|PDE1A_uc002uoq.1_Missense_Mutation_p.M305I|PDE1A_uc010zfq.1_Missense_Mutation_p.M305I|PDE1A_uc002uor.2_Missense_Mutation_p.M289I|PDE1A_uc002uou.2_Missense_Mutation_p.M271I	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	305	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TCAAGATATTCATTTCTTCTT	0.343													4	23					0	0	0.009096	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187703701	187703701	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:187703701G>A	uc002upu.1	-	4	519	c.479C>T	c.(478-480)CCT>CTT	p.P160L		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	160	RING-type 1.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			AAAGGTGACAGGAAGCTTTTT	0.308													7	152					0	0	0.001984	0	0
MFSD6	54842	broad.mit.edu	37	2	191301840	191301840	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:191301840C>T	uc002urz.2	+	3	1409	c.1085C>T	c.(1084-1086)CCC>CTC	p.P362L		NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	362					transmembrane transport	integral to membrane				ovary(2)	2						GGGTGTAAGCCCCCCGAGTAC	0.572													4	32					0	0	0.009096	0	0
CASP10	843	broad.mit.edu	37	2	202074268	202074268	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:202074268G>A	uc002uxl.1	+	9	1816	c.1398G>A	c.(1396-1398)CTG>CTA	p.L466L	CASP10_uc002uxj.1_Silent_p.L466L|CASP10_uc002uxk.1_Silent_p.L423L|CASP10_uc010fta.1_Silent_p.L399L|CASP10_uc002uxm.1_Silent_p.L423L|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	466					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						GTAATCATCTGAAGAAATTGG	0.383													6	107					0	0	0.003080	0	0
NBEAL1	65065	broad.mit.edu	37	2	203972708	203972708	+	Silent	SNP	A	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:203972708A>G	uc002uzt.3	+	13	1992	c.1659A>G	c.(1657-1659)GCA>GCG	p.A553A		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	553							binding			ovary(1)|skin(1)	2						TGACTCGAGCAATCCTGACAA	0.463													14	532					0	0	0.004007	0	0
CRYGB	1419	broad.mit.edu	37	2	209007617	209007617	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:209007617C>T	uc002vcp.3	-	3	306	c.273G>A	c.(271-273)ATG>ATA	p.M91I		NM_005210	NP_005201	P07316	CRGB_HUMAN	crystallin, gamma B	91	Beta/gamma crystallin 'Greek key' 3.				visual perception		structural constituent of eye lens				0				Epithelial(149;0.0641)|LUSC - Lung squamous cell carcinoma(261;0.0703)|Lung(261;0.132)		CGTAGATCTTCATTCTGTAAG	0.473													5	133					0	0	0.004482	0	0
FN1	2335	broad.mit.edu	37	2	216271880	216271880	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:216271880G>A	uc002vfa.2	-	18	2949	c.2683C>T	c.(2683-2685)CAA>TAA	p.Q895*	FN1_uc002vfb.2_Nonsense_Mutation_p.Q895*|FN1_uc002vfc.2_Nonsense_Mutation_p.Q895*|FN1_uc002vfd.2_Nonsense_Mutation_p.Q895*|FN1_uc002vfe.2_Nonsense_Mutation_p.Q895*|FN1_uc002vff.2_Nonsense_Mutation_p.Q895*|FN1_uc002vfg.2_Nonsense_Mutation_p.Q895*|FN1_uc002vfh.2_Nonsense_Mutation_p.Q895*|FN1_uc002vfi.2_Nonsense_Mutation_p.Q895*|FN1_uc002vfj.2_Nonsense_Mutation_p.Q895*	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	895	Fibronectin type-III 3.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTTTCTTGTTGAATGACAACA	0.423													7	91					0	0	0.003080	0	0
FN1	2335	broad.mit.edu	37	2	216289870	216289870	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:216289870T>C	uc002vfa.2	-	7	1249	c.983A>G	c.(982-984)AAT>AGT	p.N328S	FN1_uc002vfb.2_Missense_Mutation_p.N328S|FN1_uc002vfc.2_Missense_Mutation_p.N328S|FN1_uc002vfd.2_Missense_Mutation_p.N328S|FN1_uc002vfe.2_Missense_Mutation_p.N328S|FN1_uc002vff.2_Missense_Mutation_p.N328S|FN1_uc002vfg.2_Missense_Mutation_p.N328S|FN1_uc002vfh.2_Missense_Mutation_p.N328S|FN1_uc002vfi.2_Missense_Mutation_p.N328S|FN1_uc002vfj.2_Missense_Mutation_p.N328S|FN1_uc002vfl.2_Missense_Mutation_p.N328S	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	328	Fibronectin type-I 6.|Collagen-binding.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CATTTGCTTATTTCCTTGTGT	0.498													8	230					0	0	0.003080	0	0
SLC4A3	6508	broad.mit.edu	37	2	220504246	220504246	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:220504246C>T	uc002vmp.3	+	20	3335	c.3066C>T	c.(3064-3066)TCC>TCT	p.S1022S	SLC4A3_uc002vmo.3_Silent_p.S1049S|SLC4A3_uc010fwm.2_Silent_p.S572S	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	1022	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCAAGGGCTCCGGTTTCCACC	0.682													6	80					0	0	0.003080	0	0
CUL3	8452	broad.mit.edu	37	2	225370813	225370813	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:225370813G>A	uc002vny.2	-	8	1450	c.1066C>T	c.(1066-1068)CTC>TTC	p.L356F	CUL3_uc010zls.1_Missense_Mutation_p.L290F|CUL3_uc010fwy.1_Missense_Mutation_p.L362F	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	356					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		GATTCCAGGAGGAAGCGATCG	0.358													3	29					0	0	0.009096	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581193	234581193	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:234581193G>A	uc002vus.2	+	1	650	c.613G>A	c.(613-615)GAG>AAG	p.E205K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.E205K	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	205					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	GACTTTCAAGGAGAGAGTACG	0.438													7	223					0	0	0.003080	0	0
UGT1A6	54578	broad.mit.edu	37	2	234602330	234602330	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:234602330C>T	uc002vuv.3	+	1	819	c.680C>T	c.(679-681)TCA>TTA	p.S227L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Missense_Mutation_p.S227L	NM_001072	NP_001063	P19224	UD16_HUMAN	UDP glycosyltransferase 1 family, polypeptide A6	227					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity				0		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;5.86e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000384)|Lung(119;0.00306)|LUSC - Lung squamous cell carcinoma(224;0.00702)		TGTCTGTTTTCAAAGTATGAA	0.393													6	151					0	0	0.001168	0	0
UGT1A3	54659	broad.mit.edu	37	2	234638020	234638020	+	Missense_Mutation	SNP	C	T	T	rs143192251		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr2:234638020C>T	uc002vuy.2	+	1	248	c.248C>T	c.(247-249)TCG>TTG	p.S83L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Missense_Mutation_p.S83L	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	83					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TATGCCATTTCGTGGACCCAG	0.468													7	84					0	0	0.006214	0	0
PDYN	5173	broad.mit.edu	37	20	1963712	1963712	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:1963712C>T	uc010gaj.2	-	2	261	c.19G>A	c.(19-21)GTC>ATC	p.V7I	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.V7I|PDYN_uc010zpt.1_Intron	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	7					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						GCAGCCAGGACCAGCCCCTGC	0.552													5	47					0	0	0.001168	0	0
RASSF2	9770	broad.mit.edu	37	20	4776507	4776507	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:4776507G>A	uc002wld.2	-	4	295	c.241C>T	c.(241-243)CCA>TCA	p.P81S	RASSF2_uc002wlc.2_5'Flank|RASSF2_uc002wle.2_RNA|RASSF2_uc002wlf.2_Missense_Mutation_p.P81S	NM_170774	NP_739580	P50749	RASF2_HUMAN	Ras association domain family 2	81					cell cycle|signal transduction	nucleus	protein binding			ovary(3)|lung(2)|large_intestine(1)	6						GAGGAGGATGGAGGGGGTCGA	0.612													4	91					0	0	0.000602	0	0
PROKR2	128674	broad.mit.edu	37	20	5282926	5282926	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:5282926G>A	uc010zqw.1	-	2	915	c.915C>T	c.(913-915)TTC>TTT	p.F305F	PROKR2_uc010zqx.1_Silent_p.F305F|PROKR2_uc010zqy.1_Silent_p.F305F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	305	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TTTCCTTCACGAACACAGTGG	0.537										HNSCC(71;0.22)			5	58					0	0	0.000602	0	0
PLCB4	5332	broad.mit.edu	37	20	9438063	9438063	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:9438063G>A	uc002wnf.2	+	32	3099	c.2963G>A	c.(2962-2964)GGA>GAA	p.G988E	PLCB4_uc010gbw.1_Missense_Mutation_p.G988E|PLCB4_uc010gbx.2_Missense_Mutation_p.G1000E|PLCB4_uc002wne.2_Missense_Mutation_p.G988E|PLCB4_uc002wnh.2_Missense_Mutation_p.G835E	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	988					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ATTTTCAGGGGAAGTAATTGT	0.348													4	49					0	0	0.000602	0	0
SEL1L2	80343	broad.mit.edu	37	20	13830965	13830965	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:13830965C>T	uc010gcf.2	-	19	1901	c.1819G>A	c.(1819-1821)GAC>AAC	p.D607N	SEL1L2_uc002woq.3_Missense_Mutation_p.D468N|SEL1L2_uc010zrl.1_Missense_Mutation_p.D494N|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	607	Extracellular (Potential).|Sel1-like 11.					integral to membrane	binding			ovary(2)	2						AAGTGAATGTCCTAGAAGGAG	0.398													4	69					0	0	0.009096	0	0
SUN5	140732	broad.mit.edu	37	20	31571702	31571702	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:31571702C>T	uc002wyi.2	-	13	1131	c.1038G>A	c.(1036-1038)TGG>TGA	p.W346*		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	346	SUN.				spermatogenesis					skin(1)	1						CTGGGTTCCCCCAGTTGCTTG	0.597													10	117					0	0	0.008291	0	0
SUN5	140732	broad.mit.edu	37	20	31583443	31583443	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:31583443C>T	uc002wyi.2	-	8	609	c.516G>A	c.(514-516)ATG>ATA	p.M172I		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	172	Potential.				spermatogenesis					skin(1)	1						ACATGGCTTCCATCTCCTGGA	0.408													7	214					0	0	0.003080	0	0
CHMP4B	128866	broad.mit.edu	37	20	32439967	32439967	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:32439967C>T	uc002xaa.2	+	4	724	c.568C>T	c.(568-570)CCT>TCT	p.P190S		NM_176812	NP_789782	Q9H444	CHM4B_HUMAN	chromatin modifying protein 4B	190					cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			ovary(1)|central_nervous_system(1)	2						CGAAACAGTCCCTCTACCAAA	0.473													4	143					0	0	0.000602	0	0
AHCY	191	broad.mit.edu	37	20	32879290	32879291	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:32879290_32879291AG>GA	uc002xai.2	-	5	631_632	c.492_493CT>TC	c.(490-495)CTCTAC>CTTCAC	p.Y165H	AHCY_uc002xaj.2_Missense_Mutation_p.Y137H	NM_000687	NP_000678	P23526	SAHH_HUMAN	adenosylhomocysteinase isoform 1	165					methylation|xenobiotic metabolic process	cytosol|melanosome	adenosylhomocysteinase activity|protein binding				0						ATCATCTTGTAGAGGTTGTGGA	0.564													7	122					0	0	0.004672	0	0
C20orf152	140894	broad.mit.edu	37	20	34563906	34563906	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:34563906G>A	uc002xes.1	+	3	381	c.225G>A	c.(223-225)ATG>ATA	p.M75I	C20orf152_uc002xer.1_Missense_Mutation_p.M75I|C20orf152_uc010gfp.1_RNA			Q96M20	CT152_HUMAN	SubName: Full=C20orf152 protein;	75											0	Breast(12;0.00631)					TTGATACCATGGACTTCATTG	0.388													6	85					0	0	0.001984	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991503	39991503	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:39991503G>A	uc002xjy.1	-	4	930	c.706C>T	c.(706-708)CCA>TCA	p.P236S		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	236						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				CTGTCTCCTGGGCCCACAAGC	0.602													3	43					0	0	0.004672	0	0
PTPRT	11122	broad.mit.edu	37	20	41306677	41306677	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:41306677G>A	uc002xkg.2	-	7	1166	c.982C>T	c.(982-984)CGC>TGC	p.R328C	PTPRT_uc010ggj.2_Missense_Mutation_p.R328C	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	328	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTGGTGGTGCGATATTCCACT	0.562													4	79					0	0	0.000602	0	0
ZMYND8	23613	broad.mit.edu	37	20	45905214	45905214	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:45905214G>A	uc002xta.1	-	11	1518	c.1264C>T	c.(1264-1266)CGC>TGC	p.R422C	ZMYND8_uc010ghq.1_Missense_Mutation_p.R99C|ZMYND8_uc010ghr.1_Missense_Mutation_p.R397C|ZMYND8_uc002xst.1_Missense_Mutation_p.R397C|ZMYND8_uc002xsu.1_Missense_Mutation_p.R422C|ZMYND8_uc002xsv.1_Missense_Mutation_p.R397C|ZMYND8_uc002xsw.1_Missense_Mutation_p.R174C|ZMYND8_uc002xsx.1_Missense_Mutation_p.R174C|ZMYND8_uc002xsy.1_Missense_Mutation_p.R397C|ZMYND8_uc002xsz.1_Missense_Mutation_p.R359C|ZMYND8_uc010zxy.1_Missense_Mutation_p.R449C|ZMYND8_uc002xtb.1_Missense_Mutation_p.R442C|ZMYND8_uc002xss.2_Missense_Mutation_p.R422C|ZMYND8_uc010zxz.1_Missense_Mutation_p.R417C|ZMYND8_uc002xtc.1_Missense_Mutation_p.R442C|ZMYND8_uc002xtd.1_Missense_Mutation_p.R417C|ZMYND8_uc002xte.1_Missense_Mutation_p.R422C|ZMYND8_uc010zya.1_Missense_Mutation_p.R422C|ZMYND8_uc002xtf.1_Missense_Mutation_p.R442C|ZMYND8_uc002xtg.2_Missense_Mutation_p.R416C|ZMYND8_uc010ghs.1_Missense_Mutation_p.R416C	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	422							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			GAAATCCGGCGGCCTGTGCCC	0.577													4	99					0	0	0.009096	0	0
ATP9A	10079	broad.mit.edu	37	20	50342430	50342430	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:50342430G>A	uc002xwg.1	-	3	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F	ATP9A_uc010gih.1_Silent_p.F70F	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	85	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						CAAGAAGTAAGAAATAGAGGT	0.438													6	61					0	0	0.001984	0	0
DIDO1	11083	broad.mit.edu	37	20	61513451	61513451	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:61513451G>A	uc002ydr.1	-	16	4121	c.3857C>T	c.(3856-3858)CCA>CTA	p.P1286L	DIDO1_uc002yds.1_Missense_Mutation_p.P1286L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1286	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TGCTGTGGCTGGGCTGGGGGC	0.642													8	88					0	0	0.008291	0	0
DIDO1	11083	broad.mit.edu	37	20	61537302	61537302	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr20:61537302G>A	uc002ydr.1	-	6	1789	c.1525C>T	c.(1525-1527)CAC>TAC	p.H509Y	DIDO1_uc002yds.1_Missense_Mutation_p.H509Y|DIDO1_uc002ydt.1_Missense_Mutation_p.H509Y|DIDO1_uc002ydu.1_Missense_Mutation_p.H509Y|DIDO1_uc002ydv.1_Missense_Mutation_p.H509Y|DIDO1_uc002ydw.1_Missense_Mutation_p.H509Y|DIDO1_uc002ydx.1_Missense_Mutation_p.H509Y|DIDO1_uc011aao.1_Missense_Mutation_p.H509Y	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	509					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TTGTAATTGTGATCGCTCGCC	0.557													6	159					0	0	0.001168	0	0
KRTAP13-1	140258	broad.mit.edu	37	21	31768434	31768434	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr21:31768434C>T	uc002yoa.2	+	1	43	c.30C>T	c.(28-30)TTC>TTT	p.F10F		NM_181599	NP_853630	Q8IUC0	KR131_HUMAN	keratin associated protein 13-1	10						intermediate filament				ovary(1)	1						CTGGAAACTTCTCCTCCCGCT	0.537													6	190					0	0	0.001984	0	0
KCNJ6	3763	broad.mit.edu	37	21	39087225	39087225	+	Missense_Mutation	SNP	C	T	T	rs143219969		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr21:39087225C>T	uc011aej.1	-	3	288	c.235G>A	c.(235-237)GAT>AAT	p.D79N	KCNJ6_uc002ywo.2_Missense_Mutation_p.D79N	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	79	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding	p.D79N(1)		skin(1)	1					Halothane(DB01159)	GTGAAGATATCGGTCAGGTAG	0.463													6	106					0	0	0.003080	0	0
TRPM2	7226	broad.mit.edu	37	21	45825905	45825905	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr21:45825905C>T	uc002zet.1	+	19	2988	c.2775C>T	c.(2773-2775)ATC>ATT	p.I925I	TRPM2_uc002zeu.1_Silent_p.I925I|TRPM2_uc002zew.1_Silent_p.I925I|TRPM2_uc010gpt.1_Silent_p.I925I|TRPM2_uc002zex.1_Silent_p.I711I|TRPM2_uc002zey.1_Silent_p.I438I	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	925	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCAAGATCATCATTGTGAAGC	0.642													9	175					0	0	0.006214	0	0
TRPM2	7226	broad.mit.edu	37	21	45838352	45838352	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr21:45838352G>A	uc002zet.1	+	23	3588	c.3375G>A	c.(3373-3375)GAG>GAA	p.E1125E	TRPM2_uc002zeu.1_Silent_p.E1125E|TRPM2_uc002zew.1_Silent_p.E1125E|TRPM2_uc010gpt.1_Silent_p.E1125E|TRPM2_uc002zex.1_Silent_p.E911E|TRPM2_uc002zey.1_Silent_p.E638E|uc011afe.1_Intron	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1125	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TATCCTGGGAGATCTACCTGA	0.592													5	136					0	0	0.000602	0	0
COL6A2	1292	broad.mit.edu	37	21	47541503	47541503	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr21:47541503C>T	uc002zia.1	+	18	1574	c.1492C>T	c.(1492-1494)CGT>TGT	p.R498C	COL6A2_uc002zhy.1_Missense_Mutation_p.R498C|COL6A2_uc002zhz.1_Missense_Mutation_p.R498C|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	498	Triple-helical region.|Cell attachment site (Potential).		R -> H (in UCMD).		axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		TGCAGGACCCCGTGGAGACTC	0.657													3	23					0	0	0.009096	0	0
XKR3	150165	broad.mit.edu	37	22	17288877	17288877	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:17288877G>A	uc002zlv.2	-	2	185	c.87C>T	c.(85-87)CTC>CTT	p.L29L	XKR3_uc011agf.1_Silent_p.L29L	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	29						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AGCTTAGATGGAGTCTCTGGC	0.408													5	76					0	0	0.000602	0	0
DGCR8	54487	broad.mit.edu	37	22	20074158	20074158	+	Silent	SNP	C	T	T	rs139146240		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:20074158C>T	uc002zri.2	+	2	1022	c.672C>T	c.(670-672)ATC>ATT	p.I224I	DGCR8_uc010grz.2_Silent_p.I224I|DGCR8_uc002zrj.2_5'Flank	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	224	Necessary for nuclear localization and retention.|Necessary for interaction with NCL.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					CTAAAGCAATCGTTCAGAGAG	0.478													8	129					0	0	0.003080	0	0
LOC96610	96610	broad.mit.edu	37	22	22758781	22758781	+	RNA	SNP	T	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:22758781T>C	uc011aim.1	+	52		c.5866T>C								Parts of antibodies, mostly variable regions.												0						CGCAGCCGCCTTCAGTGTCTG	0.587													3	44					0	0	0.000602	0	0
LOC96610	96610	broad.mit.edu	37	22	23040796	23040796	+	RNA	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:23040796C>T	uc011aim.1	+	137		c.8703C>T								Parts of antibodies, mostly variable regions.												0						GGTTTCTAATCGCTTCTCTGG	0.537													10	150					0	0	0.006214	0	0
RFPL1	5988	broad.mit.edu	37	22	29835128	29835128	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:29835128G>A	uc003afn.2	+	1	557	c.348G>A	c.(346-348)ATG>ATA	p.M116I	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	116	B30.2/SPRY.						zinc ion binding				0						TTCTGCAGATGAACCCAAGGA	0.517													5	91					0	0	0.001168	0	0
SYN3	8224	broad.mit.edu	37	22	32914039	32914039	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:32914039G>A	uc003amx.2	-	12	1760	c.1601C>T	c.(1600-1602)CCG>CTG	p.P534L	SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Missense_Mutation_p.P533L|SYN3_uc011amc.1_Missense_Mutation_p.P168L	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	534	E.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						CTTGAGATGCGGATGGGGTGG	0.577													4	102					0	0	0.001984	0	0
MFNG	4242	broad.mit.edu	37	22	37876307	37876307	+	Missense_Mutation	SNP	G	A	A	rs146256245	byFrequency	TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:37876307G>A	uc003ass.1	-	3	505	c.335C>T	c.(334-336)GCG>GTG	p.A112V	MFNG_uc011ani.1_5'UTR|MFNG_uc011anj.1_Missense_Mutation_p.A98V|CARD10_uc003ast.1_RNA	NM_002405	NP_002396	O00587	MFNG_HUMAN	O-fucosylpeptide	112	Lumenal (Potential).				pattern specification process	extracellular space|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity			lung(1)	1	Melanoma(58;0.0574)					GCTGTGTTCCGCGGAGCAGTT	0.577													10	49					0	0	0.008291	0	0
GALR3	8484	broad.mit.edu	37	22	38221146	38221146	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:38221146G>A	uc003aub.1	+	2	801	c.776G>A	c.(775-777)TGG>TAG	p.W259*		NM_003614	NP_003605	O60755	GALR3_HUMAN	galanin receptor 3	259	Extracellular (Potential).				feeding behavior|learning or memory|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity				0	Melanoma(58;0.045)					CTGTGCTTCTGGTACGGCCGC	0.582													4	20					0	0	0.009096	0	0
CSNK1E	1454	broad.mit.edu	37	22	38696918	38696918	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:38696918G>A	uc003avj.2	-	5	637	c.376C>T	c.(376-378)CAC>TAC	p.H126Y	CSNK1E_uc003avk.2_Missense_Mutation_p.H126Y|CSNK1E_uc003avl.1_RNA|CSNK1E_uc003avm.1_Missense_Mutation_p.H126Y|CSNK1E_uc003avo.2_Missense_Mutation_p.H126Y|CSNK1E_uc003avp.1_Missense_Mutation_p.H126Y|CSNK1E_uc003avq.1_Missense_Mutation_p.H126Y	NM_152221	NP_689407	P49674	KC1E_HUMAN	casein kinase 1 epsilon	126	Protein kinase.				DNA repair|G2/M transition of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|signal transduction	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Melanoma(58;0.045)					ACGTCCCGGTGGATGAAGTTC	0.468													7	65					0	0	0.003080	0	0
DMC1	11144	broad.mit.edu	37	22	38917728	38917729	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:38917728_38917729AG>TA	uc003avz.1	-	13	1012_1013	c.837_838CT>TA	c.(835-840)ACCTTT>ACTATT	p.F280I	DMC1_uc011anv.1_Missense_Mutation_p.F225I	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	280					reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					TCTGCCTGAAAGCTGAATTAAT	0.411								Homologous_recombination					8	80					0	0	0.004672	0	0
APOBEC3B	9582	broad.mit.edu	37	22	39382370	39382370	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:39382370C>T	uc003awo.1	+	4	576	c.522C>T	c.(520-522)TTC>TTT	p.F174F	APOBEC3A_uc011aoc.1_Intron|APOBEC3B_uc003awp.1_Silent_p.F174F|APOBEC3B_uc003awq.1_RNA|APOBEC3D_uc011aod.1_Intron|APOBEC3D_uc011aoe.1_Intron|APOBEC3D_uc011aof.1_Intron	NM_004900	NP_004891	Q9UH17	ABC3B_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	174					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					GGTACAAATTCGATGAAAATT	0.478													6	129					0	0	0.001984	0	0
APOBEC3G	60489	broad.mit.edu	37	22	39482342	39482342	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:39482342T>G	uc003awx.2	+	6	1136	c.794T>G	c.(793-795)GTG>GGG	p.V265G	APOBEC3G_uc003awy.2_Missense_Mutation_p.V198G	NM_021822	NP_068594	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	265					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2	Melanoma(58;0.04)					TTCCTGGACGTGATTCCCTTT	0.493													5	84					0	0	0.001168	0	0
A4GALT	53947	broad.mit.edu	37	22	43089624	43089624	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:43089624C>T	uc003bdb.2	-	3	595	c.334G>A	c.(334-336)GTC>ATC	p.V112I	A4GALT_uc010gzd.2_Missense_Mutation_p.V112I	NM_017436	NP_059132	Q9NPC4	A4GAT_HUMAN	alpha 1,4-galactosyltransferase	112	Lumenal (Potential).				glycosphingolipid biosynthetic process|plasma membrane organization	Golgi stack|integral to Golgi membrane|membrane fraction	lactosylceramide 4-alpha-galactosyltransferase activity			central_nervous_system(2)	2						TTCATCAGGACCAGCACGTGG	0.607													8	141					0	0	0.008291	0	0
MOV10L1	54456	broad.mit.edu	37	22	50555645	50555645	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:50555645G>A	uc003bjj.2	+	9	1402	c.1319G>A	c.(1318-1320)CGA>CAA	p.R440Q	MOV10L1_uc003bjk.3_Missense_Mutation_p.R440Q|MOV10L1_uc011arp.1_Missense_Mutation_p.R420Q|MOV10L1_uc011arq.1_Missense_Mutation_p.R201Q|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	440					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		CTAATTGGGCGATACCTTGAA	0.388													4	59					0	0	0.000602	0	0
SHANK3	85358	broad.mit.edu	37	22	51159572	51159572	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr22:51159572C>T	uc003bne.1	+	22	3359	c.3359C>T	c.(3358-3360)CCC>CTC	p.P1120L	SHANK3_uc003bnf.1_Missense_Mutation_p.P567L|SHANK3_uc010hbg.1_Missense_Mutation_p.P302L	NM_001080420	NP_001073889	F2Z3L0	F2Z3L0_HUMAN	SH3 and multiple ankyrin repeat domains 3	1120										central_nervous_system(1)	1		all_cancers(38;3.75e-11)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.22)		CCCCTGGACCCCAGCTCACCC	0.726													4	11					0	0	0.000602	0	0
CNTN6	27255	broad.mit.edu	37	3	1425027	1425027	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:1425027G>A	uc003boz.2	+	19	2719	c.2452G>A	c.(2452-2454)GAA>AAA	p.E818K	CNTN6_uc011asj.1_Missense_Mutation_p.E746K|CNTN6_uc003bpa.2_Missense_Mutation_p.E818K	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	818	Fibronectin type-III 3.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TTCTGCTTCTGAAATGGAGGT	0.423													6	198					0	0	0.001168	0	0
ATG7	10533	broad.mit.edu	37	3	11406184	11406184	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:11406184C>T	uc003bwc.2	+	16	1968	c.1851C>T	c.(1849-1851)ACC>ACT	p.T617T	ATG7_uc003bwd.2_Silent_p.T617T|ATG7_uc011aum.1_Silent_p.T578T	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	617					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						AGCCTCCAACCTCTCTTGGGC	0.488													7	123					0	0	0.001984	0	0
HDAC11	79885	broad.mit.edu	37	3	13544405	13544405	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:13544405T>C	uc003bxy.2	+	8	707	c.574T>C	c.(574-576)TTC>CTC	p.F192L	HDAC11_uc010heb.2_Silent_p.T149T|HDAC11_uc011aux.1_5'UTR|HDAC11_uc011auy.1_Missense_Mutation_p.F141L	NM_024827	NP_079103	Q96DB2	HDA11_HUMAN	histone deacetylase 11 isoform 1	192	Histone deacetylase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex|plasma membrane	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding			ovary(2)	2						TGAGCGAGACTTCATGGACGA	0.612													7	255					0	0	0.003080	0	0
FGD5	152273	broad.mit.edu	37	3	14862924	14862924	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:14862924G>A	uc003bzc.2	+	1	2456	c.2346G>A	c.(2344-2346)TCG>TCA	p.S782S	FGD5_uc011avk.1_Silent_p.S782S	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	782					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CCATGAACTCGGACTATGAGA	0.582													8	220					0	0	0.004482	0	0
GALNTL2	117248	broad.mit.edu	37	3	16237390	16237390	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:16237390C>T	uc003car.3	+	2	1138	c.663C>T	c.(661-663)GCC>GCT	p.A221A	GALNTL2_uc003caq.3_5'UTR	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	221	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						TGCCCAGGGCCTTCCTGAAGG	0.617													4	38					0	0	0.009096	0	0
CCR4	1233	broad.mit.edu	37	3	32995532	32995532	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:32995532C>T	uc003cfg.1	+	2	786	c.618C>T	c.(616-618)ATC>ATT	p.I206I		NM_005508	NP_005499	P51679	CCR4_HUMAN	chemokine (C-C motif) receptor 4	206	Extracellular (Potential).				chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response	integral to plasma membrane				lung(1)	1						CCCTGGAAATCAACATTCTCG	0.453													7	135					0	0	0.003080	0	0
DCLK3	85443	broad.mit.edu	37	3	36779592	36779592	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:36779592G>A	uc003cgi.2	-	2	1050	c.559C>T	c.(559-561)CCC>TCC	p.P187S		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	187						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TTTGCCTCGGGAGACCTCCTG	0.592													5	80					0	0	0.000602	0	0
TRANK1	9881	broad.mit.edu	37	3	36898710	36898710	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:36898710C>T	uc003cgj.2	-	3	1023	c.721G>A	c.(721-723)GAG>AAG	p.E241K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	791					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CACTCGATCTCCCAGGTCATG	0.493													12	249					0	0	0.013537	0	0
MYD88	4615	broad.mit.edu	37	3	38182688	38182688	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:38182688C>T	uc003chx.2	+	5	1049	c.865C>T	c.(865-867)CTG>TTG	p.L289L	MYD88_uc011ayi.1_Silent_p.L281L|MYD88_uc011ayj.1_3'UTR|MYD88_uc011ayk.1_3'UTR|MYD88_uc011ayl.1_Silent_p.L236L	NM_002468	NP_002459	Q99836	MYD88_HUMAN	myeloid differentiation primary response gene	268	TIR.				3'-UTR-mediated mRNA stabilization|anti-apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-17 production|positive regulation of interleukin-23 production|positive regulation of interleukin-6 production|regulation of inflammatory response|response to interleukin-1|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|intrinsic to membrane|plasma membrane	death receptor binding|TIR domain binding|transmembrane receptor activity			haematopoietic_and_lymphoid_tissue(93)|breast(1)	94				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CCCCAGCATCCTGAGGTTCAT	0.557			Mis 		ABC-DLBCL								7	112					0	0	0.001984	0	0
SCN10A	6336	broad.mit.edu	37	3	38743472	38743472	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:38743472C>T	uc003ciq.2	-	26	4515	c.4515G>A	c.(4513-4515)ACG>ACA	p.T1505T		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1505	IV.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCAGAATTTTCGTCTTTTCTT	0.453													5	66					0	0	0.001168	0	0
SCN11A	11280	broad.mit.edu	37	3	38968340	38968340	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:38968340G>A	uc011ays.1	-	4	770	c.571C>T	c.(571-573)CTT>TTT	p.L191F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	191	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GGATCTCGAAGGAAAGAAAAC	0.368													5	122					0	0	0.000602	0	0
HHATL	57467	broad.mit.edu	37	3	42740367	42740367	+	Missense_Mutation	SNP	C	T	T	rs148287985		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:42740367C>T	uc003clw.2	-	6	463	c.316G>A	c.(316-318)GGG>AGG	p.G106R	HHATL_uc003clx.2_Missense_Mutation_p.G106R	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	106	Helical; (Potential).				negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		GCCAAGGCCCCGTACACAGCA	0.612													4	72					0	0	0.001168	0	0
C3orf39	84892	broad.mit.edu	37	3	43122071	43122071	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:43122071C>T	uc003cmq.1	-	2	994	c.853G>A	c.(853-855)GGC>AGC	p.G285S	C3orf39_uc003cmr.1_Missense_Mutation_p.G285S	NM_032806	NP_116195	Q8NAT1	AGO61_HUMAN	glycosyltransferase precursor	285						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0571)|Kidney(284;0.0718)		TACTCCTCGCCTAGGGGGACT	0.557													4	78					0	0	0.009096	0	0
LTF	4057	broad.mit.edu	37	3	46479551	46479551	+	Missense_Mutation	SNP	G	A	A	rs148227142		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:46479551G>A	uc003cpq.2	-	16	2016	c.1978C>T	c.(1978-1980)CTT>TTT	p.L660F	LTF_uc003fzr.2_Missense_Mutation_p.L616F|LTF_uc010hjh.2_Missense_Mutation_p.L658F|LTF_uc003cpr.2_Missense_Mutation_p.L647F	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	660	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	TTGAACAGAAGGTTTTTGGTT	0.433													10	165					0	0	0.010729	0	0
LTF	4057	broad.mit.edu	37	3	46487963	46487963	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:46487963G>A	uc003cpq.2	-	11	1363	c.1325C>T	c.(1324-1326)CCT>CTT	p.P442L	LTF_uc003fzr.2_Missense_Mutation_p.P398L|LTF_uc010hjh.2_Missense_Mutation_p.P440L|LTF_uc003cpr.2_Missense_Mutation_p.P429L	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	442	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	GTTAGGATCAGGGTCACTGCT	0.433													4	86					0	0	0.009096	0	0
QRICH1	54870	broad.mit.edu	37	3	49095126	49095126	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:49095126G>A	uc010hkq.2	-	4	803	c.507C>T	c.(505-507)ATC>ATT	p.I169I	QRICH1_uc003cvu.2_Silent_p.I169I|QRICH1_uc003cvv.2_Silent_p.I169I	NM_198880	NP_942581	Q2TAL8	QRIC1_HUMAN	glutamine-rich 1	169	Gln-rich.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.88e-05)|Kidney(197;0.00239)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		GCTGCACCTGGATCTGAGCTG	0.622													6	111					0	0	0.001168	0	0
GRM2	2912	broad.mit.edu	37	3	51747031	51747031	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:51747031C>T	uc010hlv.2	+	3	1232	c.993C>T	c.(991-993)TTC>TTT	p.F331F	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	331	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CCTCCTACTTCCAGAGCCTGG	0.632													4	43					0	0	0.009096	0	0
ERC2	26059	broad.mit.edu	37	3	56468411	56468411	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:56468411C>T	uc003dhr.1	-	2	881	c.625G>A	c.(625-627)GAG>AAG	p.E209K		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	209	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CTCATCTGCTCCTTGAGGACA	0.458													4	78					0	0	0.009096	0	0
FLNB	2317	broad.mit.edu	37	3	58084612	58084612	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:58084612C>T	uc003djj.2	+	8	1487	c.1322C>T	c.(1321-1323)CCC>CTC	p.P441L	FLNB_uc010hne.2_Missense_Mutation_p.P441L|FLNB_uc003djk.2_Missense_Mutation_p.P441L|FLNB_uc010hnf.2_Missense_Mutation_p.P441L|FLNB_uc003djl.2_Missense_Mutation_p.P272L|FLNB_uc003djm.2_Missense_Mutation_p.P272L	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	441	Filamin 2.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCTAAGAGTCCCTTCGTTGTG	0.547													5	86					0	0	0.000602	0	0
KBTBD8	84541	broad.mit.edu	37	3	67054691	67054691	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:67054691C>T	uc003dmy.2	+	3	1353	c.1300C>T	c.(1300-1302)CAT>TAT	p.H434Y	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	434	Kelch 2.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		AATGGAATTTCATAATGCTGT	0.413													7	114					0	0	0.001984	0	0
CPOX	1371	broad.mit.edu	37	3	98304426	98304426	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:98304426G>A	uc003dsx.2	-	5	1124	c.1031C>T	c.(1030-1032)TCT>TTT	p.S344F		NM_000097	NP_000088	P36551	HEM6_HUMAN	coproporphyrinogen oxidase precursor	344						mitochondrial intermembrane space	coproporphyrinogen oxidase activity|protein homodimerization activity				0						CTTGGACGGAGAGTCAAGATC	0.483													8	122					0	0	0.003080	0	0
KIAA1407	57577	broad.mit.edu	37	3	113684045	113684045	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:113684045G>A	uc003eax.2	-	17	2915	c.2768C>T	c.(2767-2769)TCA>TTA	p.S923L		NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	923										ovary(2)	2						CCAAGTATCTGATTGCTGATA	0.428													5	86					0	0	0.001168	0	0
KALRN	8997	broad.mit.edu	37	3	124153237	124153237	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:124153237C>T	uc003ehg.2	+	17	3034	c.2907C>T	c.(2905-2907)GCC>GCT	p.A969A	KALRN_uc010hrv.1_Silent_p.A960A|KALRN_uc003ehf.1_Silent_p.A969A|KALRN_uc011bjy.1_Silent_p.A960A|KALRN_uc003ehh.1_Silent_p.A315A	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	969	Spectrin 4.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGCTCCAGGCCGGCCACTACG	0.587													4	41					0	0	0.009096	0	0
EPHB1	2047	broad.mit.edu	37	3	134873008	134873008	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:134873008C>T	uc003eqt.2	+	6	1532	c.1312C>T	c.(1312-1314)CCC>TCC	p.P438S	EPHB1_uc003equ.2_5'UTR	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	438	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CTCCACCGTTCCCATCATGCA	0.532													6	212					0	0	0.001984	0	0
DZIP1L	199221	broad.mit.edu	37	3	137790621	137790621	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:137790621G>A	uc003erq.2	-	12	1842	c.1479C>T	c.(1477-1479)GTC>GTT	p.V493V	DZIP1L_uc003err.1_Silent_p.V493V	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	493						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						GCTCCCGCTGGACTCTCAGCA	0.517													10	196					0	0	0.008291	0	0
ESYT3	83850	broad.mit.edu	37	3	138187005	138187005	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:138187005C>T	uc003esk.2	+	12	1503	c.1277C>T	c.(1276-1278)TCA>TTA	p.S426L	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	426						integral to membrane|plasma membrane					0						GAGTGGCTTTCATTGCTTACT	0.582													26	518					0	0	0.007291	0	0
GRK7	131890	broad.mit.edu	37	3	141535611	141535611	+	Missense_Mutation	SNP	C	T	T	rs36004830		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:141535611C>T	uc011bnd.1	+	4	1465	c.1381C>T	c.(1381-1383)CGC>TGC	p.R461C		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	461	AGC-kinase C-terminal.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CAACTTTCCTCGCCTGGAAGC	0.443													6	107					0	0	0.001168	0	0
CPB1	1360	broad.mit.edu	37	3	148563342	148563342	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:148563342C>T	uc003ewl.2	+	9	933	c.910C>T	c.(910-912)CAC>TAC	p.H304Y		NM_001871	NP_001862	P15086	CBPB1_HUMAN	pancreatic carboxypeptidase B1 preproprotein	304		Zinc.			proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TCTGACAATCCACTCGTACTC	0.448													7	70					0	0	0.001984	0	0
P2RY13	53829	broad.mit.edu	37	3	151046682	151046682	+	Silent	SNP	A	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:151046682A>C	uc003eyv.2	-	2	183	c.162T>G	c.(160-162)GTT>GTG	p.V54V	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_176894	NP_795713	Q9BPV8	P2Y13_HUMAN	purinergic receptor P2Y, G-protein coupled, 13	54	Helical; Name=1; (Potential).					integral to membrane|plasma membrane				ovary(3)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0189)|Lung(72;0.0278)			CGGTCAAGAAAACCACTGTGT	0.507													6	127					0	0	0.001168	0	0
SERPINI2	5276	broad.mit.edu	37	3	167189541	167189541	+	Missense_Mutation	SNP	C	T	T	rs147443553		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:167189541C>T	uc003fer.1	-	1	140	c.82G>A	c.(82-84)GAA>AAA	p.E28K	SERPINI2_uc003fes.1_Missense_Mutation_p.E38K|SERPINI2_uc003fet.1_Missense_Mutation_p.E28K	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	28					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						ACTGCAAATTCGGTATTTTTT	0.368													8	111					0	0	0.003080	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169664395	169664395	+	RNA	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:169664395G>A	uc011bpp.1	-	2		c.3408C>T				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						GAGTCCACATGGATGGGCTTG	0.532													4	68					0	0	0.009096	0	0
CLDN11	5010	broad.mit.edu	37	3	170150390	170150390	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:170150390C>T	uc003fgx.2	+	3	672	c.470C>T	c.(469-471)TCC>TTC	p.S157F	CLDN11_uc011bpt.1_Intron|CLDN11_uc003fgy.2_Missense_Mutation_p.S73F	NM_005602	NP_005593	O75508	CLD11_HUMAN	claudin 11	157	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			central_nervous_system(1)	1	all_cancers(22;5.62e-23)|all_epithelial(15;7.54e-28)|all_lung(20;2.51e-17)|Lung NSC(18;1.02e-16)|Ovarian(172;0.000567)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			TTTGGCTACTCCCTGTATGCA	0.602													5	92					0	0	0.001168	0	0
DGKG	1608	broad.mit.edu	37	3	186006599	186006599	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr3:186006599G>A	uc003fqa.2	-	6	981	c.444C>T	c.(442-444)GTC>GTT	p.V148V	DGKG_uc003fqb.2_Silent_p.V148V|DGKG_uc003fqc.2_Silent_p.V148V|DGKG_uc011brx.1_Silent_p.V148V	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	148					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	AAGACCGAGGGACGGGGGGTT	0.552													16	308					0	0	0.006122	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6064107	6064107	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:6064107G>A	uc003giu.3	-	10	1768	c.1492C>T	c.(1492-1494)CTG>TTG	p.L498L	JAKMIP1_uc010idb.1_Silent_p.L498L|JAKMIP1_uc010idc.1_Silent_p.L313L|JAKMIP1_uc010idd.1_Intron|JAKMIP1_uc011bwc.1_Silent_p.L333L|JAKMIP1_uc003giv.3_Silent_p.L498L|JAKMIP1_uc010ide.2_Silent_p.L498L	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	498	Mediates interaction with TYK2 and GABBR1.|Potential.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GCGCGTTGCAGGGCCTGGTAC	0.627													4	79					0	0	0.009096	0	0
UGT2B15	7366	broad.mit.edu	37	4	69533901	69533901	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:69533901G>T	uc011cal.1	-	2	768	c.730C>A	c.(730-732)CCC>ACC	p.P244T		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	244					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						AATGTAGTGGGTCTTCCTGAT	0.358													3	63					0.00024832	0.000263866	0.009096	1	0
GRID2	2895	broad.mit.edu	37	4	94693356	94693356	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:94693356C>T	uc011cdt.1	+	16	2989	c.2731C>T	c.(2731-2733)CCA>TCA	p.P911S	GRID2_uc011cdu.1_Missense_Mutation_p.P816S	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	911	Cytoplasmic (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TGACACTTTGCCAACACGACA	0.463													5	109					0	0	0.000602	0	0
PDHA2	5161	broad.mit.edu	37	4	96761738	96761738	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:96761738G>A	uc003htr.3	+	1	500	c.437G>A	c.(436-438)GGA>GAA	p.G146E		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	146					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	TGTGCTAAAGGAAAAGGAGGA	0.532													4	60					0	0	0.009096	0	0
EEF1A1P9	441032	broad.mit.edu	37	4	106406073	106406073	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:106406073C>T	uc003hxt.1	+	1	211	c.81C>T	c.(79-81)ATC>ATT	p.I27I		NR_003586				SubName: Full=Eukaryotic translation elongation factor 1 alpha; Flags: Fragment;												0						CCATTGATATCTCTTTGTGGA	0.448													4	71					0	0	0.000602	0	0
DKK2	27123	broad.mit.edu	37	4	107845819	107845819	+	Missense_Mutation	SNP	G	A	A	rs146683175	by1000genomes	TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:107845819G>A	uc003hyi.2	-	3	1117	c.412C>T	c.(412-414)CAC>TAC	p.H138Y	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Missense_Mutation_p.H138Y	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	138					multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		GCCGGGATGTGAGGGGTTAAG	0.433													7	88					0	0	0.004482	0	0
ALPK1	80216	broad.mit.edu	37	4	113346825	113346825	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:113346825C>T	uc003iap.3	+	7	819	c.540C>T	c.(538-540)ACC>ACT	p.T180T	ALPK1_uc011cfw.1_RNA|ALPK1_uc003ian.3_Silent_p.T180T|ALPK1_uc011cfx.1_Silent_p.T102T|ALPK1_uc003iao.3_RNA|ALPK1_uc010imo.2_5'UTR	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	180							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		TTTTAGGTACCTGGCTGTACA	0.388													5	112					0	0	0.001168	0	0
TRAM1L1	133022	broad.mit.edu	37	4	118005585	118005585	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:118005585C>T	uc003ibv.3	-	1	1152	c.965G>A	c.(964-966)AGG>AAG	p.R322K		NM_152402	NP_689615	Q8N609	TR1L1_HUMAN	translocation associated membrane protein 1-like	322	Cytoplasmic (Potential).|TLC.				protein transport|transmembrane transport	endoplasmic reticulum membrane|integral to membrane				central_nervous_system(1)	1						TTCTACCCACCTCTGAAGCCA	0.413													6	139					0	0	0.003080	0	0
PCDH18	54510	broad.mit.edu	37	4	138450896	138450896	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:138450896G>A	uc003ihe.3	-	1	2734	c.2347C>T	c.(2347-2349)CCT>TCT	p.P783S	PCDH18_uc003ihf.3_Missense_Mutation_p.P776S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.P563S|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	783	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TCTAAGGTAGGAGATGAAGAT	0.507													5	44					0	0	0.001168	0	0
PCDH18	54510	broad.mit.edu	37	4	138453224	138453224	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:138453224T>G	uc003ihe.3	-	1	406	c.19A>C	c.(19-21)AAA>CAA	p.K7Q	PCDH18_uc003ihf.3_5'UTR|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	7					brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					AAGTGCATTTTAGCATTCATT	0.388													4	76					0	0	0.001984	0	0
INPP4B	8821	broad.mit.edu	37	4	143235881	143235881	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:143235881G>A	uc003iix.3	-	9	1002	c.407C>T	c.(406-408)CCC>CTC	p.P136L	INPP4B_uc003iiw.3_Missense_Mutation_p.P136L|INPP4B_uc011chm.1_RNA|INPP4B_uc011cho.1_RNA	NM_003866	NP_003857	O15327	INP4B_HUMAN	inositol polyphosphate-4-phosphatase, type II,	136	C2.				signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			ovary(1)|lung(1)	2	all_hematologic(180;0.158)					TTCTGGCGGGGGATCCTTATG	0.448													6	127					0	0	0.001168	0	0
CTSO	1519	broad.mit.edu	37	4	156864334	156864334	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:156864334G>A	uc003ipg.2	-	2	267	c.218C>T	c.(217-219)TCC>TTC	p.S73F		NM_001334	NP_001325	P43234	CATO_HUMAN	cathepsin O preproprotein	73					proteolysis	lysosome	cysteine-type endopeptidase activity				0	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.05)|Kidney(143;0.0627)|COAD - Colon adenocarcinoma(41;0.148)		AAACAAATAGGAAAACTGATT	0.313													5	141					0	0	0.001168	0	0
GLRB	2743	broad.mit.edu	37	4	158060056	158060056	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:158060056G>A	uc003ipj.2	+	7	908	c.706G>A	c.(706-708)GAA>AAA	p.E236K		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	236	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	TATCAAAAAGGAAGATATTGA	0.299													5	69					0	0	0.001984	0	0
TRIML1	339976	broad.mit.edu	37	4	189068016	189068016	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr4:189068016C>T	uc003izm.1	+	6	1012	c.897C>T	c.(895-897)CTC>CTT	p.L299L	TRIML1_uc003izn.1_Silent_p.L23L	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	299	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		ATGCCTATCTCGTGTTGTCGG	0.512													11	168					0	0	0.001855	0	0
SEMA5A	9037	broad.mit.edu	37	5	9044571	9044571	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:9044571G>A	uc003jek.2	-	22	3731	c.3019C>T	c.(3019-3021)CAC>TAC	p.H1007Y		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	1007	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GAGACGGGGTGGATGACAGTC	0.552													4	90					0	0	0.000602	0	0
DNAH5	1767	broad.mit.edu	37	5	13793818	13793818	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:13793818C>T	uc003jfd.2	-	49	8072	c.8030G>A	c.(8029-8031)CGA>CAA	p.R2677Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2677	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CATCAGCTGTCGCACTATCTC	0.438									Kartagener_syndrome				5	84					0	0	0.000602	0	0
DNAH5	1767	broad.mit.edu	37	5	13928224	13928224	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:13928224C>T	uc003jfd.2	-	3	298	c.256G>A	c.(256-258)GAT>AAT	p.D86N	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	86	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCCTCCACATCTTGATAGTAA	0.363									Kartagener_syndrome				4	51					0	0	0.000602	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33561224	33561224	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:33561224C>T	uc003jia.1	-	20	4196	c.4033G>A	c.(4033-4035)GAT>AAT	p.D1345N	ADAMTS12_uc010iuq.1_Missense_Mutation_p.D1260N	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1345	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CAGTCAGAATCCATCTGGGTG	0.572										HNSCC(64;0.19)			4	78					0	0	0.009096	0	0
EGFLAM	133584	broad.mit.edu	37	5	38427349	38427349	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:38427349C>T	uc003jlc.1	+	14	2373	c.2049C>T	c.(2047-2049)GTC>GTT	p.V683V	EGFLAM_uc003jlb.1_Silent_p.V683V|EGFLAM_uc003jle.1_Silent_p.V449V|EGFLAM_uc003jlf.1_Silent_p.V49V	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	683	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GGACCGGTGTCCTCAGGTGAG	0.502													10	179					0	0	0.010729	0	0
C6	729	broad.mit.edu	37	5	41203303	41203303	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:41203303G>A	uc003jmk.2	-	2	240	c.30C>T	c.(28-30)ATC>ATT	p.I10I	C6_uc003jml.1_Silent_p.I10I	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	10					complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CATTCAGCAGGATGAAGTACA	0.463													5	99					0	0	0.001168	0	0
CMYA5	202333	broad.mit.edu	37	5	79031211	79031211	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:79031211C>T	uc003kgc.2	+	2	6695	c.6623C>T	c.(6622-6624)CCA>CTA	p.P2208L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2208						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CAGCCAAGTCCATCCGTAGAA	0.398													5	141					0	0	0.000602	0	0
GPR98	84059	broad.mit.edu	37	5	89920996	89920996	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:89920996G>A	uc003kju.2	+	6	704	c.608G>A	c.(607-609)GGA>GAA	p.G203E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	203	Calx-beta 2.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCAGTTAAAGGAAATATCACC	0.418													4	17					0	0	0.000602	0	0
FBXL21	26223	broad.mit.edu	37	5	135273237	135273237	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:135273237G>A	uc010jec.1	+	3	510	c.489_splice	c.e3+1	p.E163_splice	FBXL21_uc003lbc.2_Splice_Site	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21						rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGTGTCGGAGGTAAGGATATT	0.413													5	93					0	0	0.000602	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719940	140719940	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:140719940G>A	uc003ljk.1	+	1	1587	c.1402G>A	c.(1402-1404)GGA>AGA	p.G468R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.G468R	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	468	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAACCCCAGAGGAGCCTCTGT	0.557													5	83					0	0	0.000602	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725269	140725269	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:140725269G>A	uc003ljm.1	+	1	1669	c.1669G>A	c.(1669-1671)GAC>AAC	p.D557N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.D317N|PCDHGA3_uc011dap.1_Missense_Mutation_p.D557N	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	557	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCAGAACGACAACGCGCC	0.622													8	175					0	0	0.004482	0	0
SH3TC2	79628	broad.mit.edu	37	5	148422290	148422290	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:148422290C>T	uc003lpu.2	-	5	648	c.496G>A	c.(496-498)GAA>AAA	p.E166K	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc003lps.2_5'Flank|SH3TC2_uc003lpt.2_5'UTR|SH3TC2_uc010jgx.2_Missense_Mutation_p.E159K|SH3TC2_uc003lpv.1_5'UTR|SH3TC2_uc011dbz.1_Missense_Mutation_p.E51K	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	166							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATATTGTTTCCAGGTGTTTA	0.438													5	67					0	0	0.001168	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159782013	159782013	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:159782013G>A	uc003lyd.2	-	2	145	c.141C>T	c.(139-141)ATC>ATT	p.I47I		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	2						collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCACCCAGGGGATCATGGTGG	0.632													4	21					0	0	0.009096	0	0
ODZ2	57451	broad.mit.edu	37	5	167630770	167630770	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr5:167630770C>T	uc010jjd.2	+	18	3480	c.3480C>T	c.(3478-3480)TTC>TTT	p.F1160F	ODZ2_uc003lzr.3_Silent_p.F937F|ODZ2_uc003lzt.3_Silent_p.F533F|ODZ2_uc010jje.2_Silent_p.F431F	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TTCAGGGATTCGAGCTGGACC	0.498													7	124					0	0	0.003080	0	0
C6orf201	404220	broad.mit.edu	37	6	4099407	4099407	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:4099407C>T	uc003mwa.3	+	3	1027	c.259C>T	c.(259-261)CCT>TCT	p.P87S	C6orf201_uc003mvz.3_RNA|C6orf201_uc011dhw.1_Missense_Mutation_p.P87S|C6orf201_uc003mwb.3_RNA	NM_001085401	NP_001078870	Q7Z4U5	CF201_HUMAN	hypothetical protein LOC404220	87											0	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				CACGAAAGAGCCTCCAATGTC	0.413													4	29					0	0	0.001168	0	0
RIOK1	83732	broad.mit.edu	37	6	7405486	7405486	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:7405486C>T	uc003mxn.2	+	12	1275	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	RIOK1_uc003mxo.2_Silent_p.F126F	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	367	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					TGACAGATTTCTTTATGAGGC	0.363													4	34					0	0	0.000602	0	0
ATXN1	6310	broad.mit.edu	37	6	16326840	16326840	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:16326840G>A	uc003nbt.2	-	8	2673	c.1702C>T	c.(1702-1704)CCT>TCT	p.P568S	ATXN1_uc010jpi.2_Missense_Mutation_p.P568S|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	568	Self-association.|Interaction with USP7.|RNA-binding.|AXH.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				GGCAGCGTAGGGGGAGCCGCC	0.612													4	75					0	0	0.009096	0	0
OR12D2	26529	broad.mit.edu	37	6	29364501	29364501	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:29364501G>A	uc003nmf.3	+	1	86	c.25G>A	c.(25-27)GAA>AAA	p.E9K		NM_013936	NP_039224	P58182	O12D2_HUMAN	olfactory receptor, family 12, subfamily D,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTCAGTCACCGAATTTCTCCT	0.433													14	198					0	0	0.004990	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778018	31778018	+	Missense_Mutation	SNP	C	T	T	rs139052456		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:31778018C>T	uc003nxh.2	-	2	1915	c.1732G>A	c.(1732-1734)GAG>AAG	p.E578K	HSPA1L_uc010jte.2_Missense_Mutation_p.E578K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	578					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GAAAGGAGCTCGTTGCATTTA	0.383													23	713					0	0	0.002780	0	0
C2	717	broad.mit.edu	37	6	31912759	31912759	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:31912759G>A	uc003nyf.2	+	17	2296	c.2032G>A	c.(2032-2034)GAA>AAA	p.E678K	C2_uc011doo.1_Missense_Mutation_p.E432K|C2_uc011dop.1_Missense_Mutation_p.E464K|C2_uc010jtk.2_Missense_Mutation_p.E546K|C2_uc011doq.1_Missense_Mutation_p.E649K|C2_uc003nyg.2_Missense_Mutation_p.E455K|CFB_uc011dor.1_Intron|C2_uc003nyh.1_Intron|CFB_uc011dos.1_5'Flank|CFB_uc003nyi.2_5'Flank|CFB_uc003nyj.3_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	678	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		GCTGGCAGGAGAATCTGGGGG	0.542													17	486					0	0	0.008871	0	0
TNXB	7148	broad.mit.edu	37	6	32029231	32029231	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:32029231G>A	uc003nzl.2	-	21	7637	c.7435C>T	c.(7435-7437)CTG>TTG	p.L2479L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2539	Fibronectin type-III 17.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGGCCATACAGGTGCATCTTG	0.672													16	383					0	0	0.004990	0	0
TAP2	6891	broad.mit.edu	37	6	32782883	32782883	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:32782883G>A	uc011dqf.1	-	13	2242	c.2120C>T	c.(2119-2121)GCC>GTC	p.A707V	HLA-DOB_uc003oca.2_Missense_Mutation_p.A100V|HLA-DOB_uc011dqg.1_Missense_Mutation_p.A100V	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	Error:Variant_position_missing_in_Q03519_after_alignment					antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						CCCATCCACGGCCTGTCTGCT	0.592													4	42					0	0	0.009096	0	0
HLA-DMA	3108	broad.mit.edu	37	6	32917102	32917102	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:32917102C>T	uc003ocm.2	-	4	813	c.727G>A	c.(727-729)GGC>AGC	p.G243S		NM_006120	NP_006111	Q31604	Q31604_HUMAN	major histocompatibility complex, class II, DM	243						integral to membrane|MHC class II protein complex					0						ACGATGATGCCCAGCACACCC	0.587													4	44					0	0	0.009096	0	0
ZBTB22	9278	broad.mit.edu	37	6	33284485	33284485	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:33284485G>A	uc003oeb.2	-	2	361	c.209C>T	c.(208-210)GCT>GTT	p.A70V	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.A70V	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	70	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGCCCGATGAGCCCGGAACTC	0.607													7	105					0	0	0.003080	0	0
ANKS1A	23294	broad.mit.edu	37	6	35048853	35048853	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:35048853C>T	uc003ojx.3	+	17	2769	c.2627C>T	c.(2626-2628)CCT>CTT	p.P876L	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Missense_Mutation_p.P416L|ANKS1A_uc010jvp.1_Missense_Mutation_p.P250L	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	876						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						CTGCTGCTGCCTCCAGGGGAC	0.627													7	47					0	0	0.004482	0	0
MEP1A	4224	broad.mit.edu	37	6	46797217	46797217	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:46797217G>A	uc010jzh.1	+	10	1095	c.1053G>A	c.(1051-1053)ACG>ACA	p.T351T	MEP1A_uc011dwg.1_Silent_p.T73T|MEP1A_uc011dwh.1_Silent_p.T379T|MEP1A_uc011dwi.1_Silent_p.T251T	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	351	Extracellular (Potential).|MAM.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			ATAAAATGACGGGAAGTCCTT	0.517													9	158					0	0	0.004482	0	0
PKHD1	5314	broad.mit.edu	37	6	51774190	51774190	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:51774190G>A	uc003pah.1	-	40	6849	c.6573C>T	c.(6571-6573)TCC>TCT	p.S2191S	PKHD1_uc010jzn.1_Silent_p.S216S|PKHD1_uc003pai.2_Silent_p.S2191S	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2191	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CTTCTGGGAAGGACTGAACGA	0.498													8	198					0	0	0.003080	0	0
PKHD1	5314	broad.mit.edu	37	6	51882277	51882277	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:51882277G>A	uc003pah.1	-	34	5807	c.5531C>T	c.(5530-5532)TCC>TTC	p.S1844F	PKHD1_uc003pai.2_Missense_Mutation_p.S1844F	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1844	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GAGGCATTGGGAACTTTCCTC	0.493													5	92					0	0	0.000602	0	0
EFHC1	114327	broad.mit.edu	37	6	52317573	52317573	+	Missense_Mutation	SNP	C	T	T	rs139197513		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:52317573C>T	uc003pap.3	+	4	876	c.661C>T	c.(661-663)CGT>TGT	p.R221C	EFHC1_uc011dwv.1_Missense_Mutation_p.R130C|EFHC1_uc011dww.1_Missense_Mutation_p.R202C	NM_018100	NP_060570	Q5JVL4	EFHC1_HUMAN	EF-hand domain (C-terminal) containing 1	221			R -> H (in EJM1; associated with T-77; reduces substantially the cell death effect; reduces partly the calcium influx; binds to CACNA1E).			axoneme|neuronal cell body	calcium ion binding|protein C-terminus binding			ovary(2)|skin(1)	3	Lung NSC(77;0.109)					ACAGCCTCTTCGTAAGTATGT	0.383													6	88					0	0	0.001168	0	0
C6orf142	90523	broad.mit.edu	37	6	53986275	53986275	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:53986275C>T	uc003pcg.3	+	2	207	c.94C>T	c.(94-96)CTG>TTG	p.L32L	C6orf142_uc003pcf.2_Silent_p.L32L|C6orf142_uc003pch.3_Intron|C6orf142_uc011dwz.1_Intron|C6orf142_uc011dxa.1_Silent_p.L43L	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	32	Interaction with LMNA.					nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					AGCCAAACCTCTGATCTTCAC	0.408													6	111					0	0	0.006214	0	0
DST	667	broad.mit.edu	37	6	56765251	56765251	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:56765251G>A	uc003pdf.2	-	3	413	c.385C>T	c.(385-387)CAC>TAC	p.H129Y		NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	Error:Variant_position_missing_in_Q03001_after_alignment					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TGAACAGAGTGATAAAATTCT	0.408													11	201					0	0	0.010729	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904714	73904714	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:73904714G>A	uc003pgk.2	+	14	2723	c.2376G>A	c.(2374-2376)CAG>CAA	p.Q792Q	KCNQ5_uc011dyh.1_Silent_p.Q811Q|KCNQ5_uc011dyi.1_Silent_p.Q802Q|KCNQ5_uc010kat.2_Silent_p.Q783Q|KCNQ5_uc011dyj.1_Silent_p.Q682Q|KCNQ5_uc011dyk.1_Silent_p.Q542Q	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	792					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		AAAATGTTCAGGTTGCACAGT	0.507													4	62					0	0	0.009096	0	0
FILIP1	27145	broad.mit.edu	37	6	76023417	76023417	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:76023417G>A	uc003pia.2	-	5	2504	c.2131C>T	c.(2131-2133)CGG>TGG	p.R711W	FILIP1_uc003phy.1_Missense_Mutation_p.R711W|FILIP1_uc003phz.2_Missense_Mutation_p.R612W|FILIP1_uc010kbe.2_Missense_Mutation_p.R714W|FILIP1_uc003pib.1_Missense_Mutation_p.R463W	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	711	Potential.									skin(3)|ovary(1)	4						TCTTCCAACCGAAATCTGTGT	0.413													9	178					0	0	0.006214	0	0
FILIP1	27145	broad.mit.edu	37	6	76024879	76024879	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:76024879G>A	uc003pia.2	-	5	1042	c.669C>T	c.(667-669)GCC>GCT	p.A223A	FILIP1_uc003phy.1_Silent_p.A223A|FILIP1_uc003phz.2_Silent_p.A124A|FILIP1_uc010kbe.2_Silent_p.A226A|FILIP1_uc003pib.1_5'UTR	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	223	Potential.									skin(3)|ovary(1)	4						TTTCTTTGCGGGCTTGATAAG	0.338													5	46					0	0	0.000602	0	0
PRSS35	167681	broad.mit.edu	37	6	84234001	84234001	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:84234001G>A	uc003pjz.2	+	2	1004	c.841G>A	c.(841-843)GAG>AAG	p.E281K	PRSS35_uc010kbm.2_Missense_Mutation_p.E281K	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	281	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		TGCTCTTCTGGAGCTGAAGCG	0.493													4	57					0	0	0.009096	0	0
MDN1	23195	broad.mit.edu	37	6	90372576	90372576	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:90372576C>T	uc003pnn.1	-	86	14463	c.14347G>A	c.(14347-14349)GAT>AAT	p.D4783N		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4783					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		tcctcctcatcATCATCACCC	0.393													7	133					0	0	0.001984	0	0
CASP8AP2	9994	broad.mit.edu	37	6	90572225	90572225	+	Nonsense_Mutation	SNP	T	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:90572225T>A	uc003pnr.2	+	7	993	c.797T>A	c.(796-798)TTA>TAA	p.L266*	CASP8AP2_uc003pns.2_Intron|CASP8AP2_uc003pnt.2_Nonsense_Mutation_p.L266*|CASP8AP2_uc011dzz.1_Nonsense_Mutation_p.L266*	NM_001137667	NP_001131139	Q9UKL3	C8AP2_HUMAN	caspase 8 associated protein 2	266					cell cycle|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|nucleus	caspase activator activity|death receptor binding|transcription corepressor activity			ovary(2)	2		all_cancers(76;3.64e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;4.69e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0953)		CGAAAAGACTTAAGTACTGGC	0.423													6	193					0	0	0.001168	0	0
MCHR2	84539	broad.mit.edu	37	6	100368900	100368900	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:100368900G>A	uc003pqh.1	-	6	1254	c.939C>T	c.(937-939)TTC>TTT	p.F313F	MCHR2_uc003pqi.1_Silent_p.F313F	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	313	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		GACGTTTCTGGAAATTTCCAC	0.438													9	119					0	0	0.008291	0	0
CDK19	23097	broad.mit.edu	37	6	110942464	110942465	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:110942464_110942465CC>AT	uc003puh.1	-	12	1292_1293	c.1219_1220GG>AT	c.(1219-1221)GGG>ATG	p.G407M	CDK19_uc003pui.1_Missense_Mutation_p.G347M|CDK19_uc011eax.1_Missense_Mutation_p.G283M	NM_015076	NP_055891	Q9BWU1	CDK19_HUMAN	cell division cycle 2-like 6 (CDK8-like)	407							ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						ACCTGCGGTCCCGTTGGTCTGG	0.678													9	92					0	0	0.004672	0	0
LAMA4	3910	broad.mit.edu	37	6	112522853	112522853	+	Silent	SNP	A	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:112522853A>G	uc003pvu.2	-	5	768	c.459T>C	c.(457-459)GTT>GTC	p.V153V	LAMA4_uc003pvv.2_Silent_p.V153V|LAMA4_uc003pvt.2_Silent_p.V153V	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	153	Laminin EGF-like 2.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		AAATGCACCGAACAGCTCCAT	0.363													10	340					0	0	0.008291	0	0
DSE	29940	broad.mit.edu	37	6	116747888	116747888	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:116747888G>A	uc003pws.2	+	3	762	c.568G>A	c.(568-570)GAA>AAA	p.E190K	DSE_uc011ebf.1_Missense_Mutation_p.E190K|DSE_uc011ebg.1_Missense_Mutation_p.E209K|DSE_uc003pwt.2_Missense_Mutation_p.E190K	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	190					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		GTATATGTATGAAACTTCATA	0.448													5	36					0	0	0.000602	0	0
THEMIS	387357	broad.mit.edu	37	6	128134948	128134948	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:128134948C>T	uc003qbi.2	-	5	1157	c.838G>A	c.(838-840)GAG>AAG	p.E280K	THEMIS_uc010kfa.2_Missense_Mutation_p.E183K|THEMIS_uc011ebt.1_Missense_Mutation_p.E280K|THEMIS_uc010kfb.2_Missense_Mutation_p.E245K	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	280	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						ATGGGGAACTCTTTACTAGTC	0.408													6	111					0	0	0.001984	0	0
LAMA2	3908	broad.mit.edu	37	6	129636797	129636797	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:129636797G>A	uc003qbn.2	+	25	3837	c.3732G>A	c.(3730-3732)AAG>AAA	p.K1244K	LAMA2_uc003qbo.2_Silent_p.K1244K	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1244	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TTGAAGGAAAGAAGGTAAGCA	0.343													4	54					0	0	0.009096	0	0
MOXD1	26002	broad.mit.edu	37	6	132649188	132649188	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:132649188G>A	uc003qdf.2	-	6	1009	c.910C>T	c.(910-912)CTA>TTA	p.L304L	MOXD1_uc003qde.2_Silent_p.L236L	NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	304	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		TGGACTTCTAGGAGCACATAA	0.353													4	95					0	0	0.009096	0	0
CCDC28A	25901	broad.mit.edu	37	6	139094833	139094833	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:139094833G>A	uc003qie.2	+	1	177	c.22G>A	c.(22-24)GCG>ACG	p.A8T	uc003qid.1_5'Flank	NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	8											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		GGAGCCAAGAGCGACACTGGG	0.597													5	128					0	0	0.001168	0	0
GPR126	57211	broad.mit.edu	37	6	142711423	142711423	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:142711423G>A	uc010khc.2	+	7	1662	c.1251G>A	c.(1249-1251)GTG>GTA	p.V417V	GPR126_uc010khd.2_Silent_p.V389V|GPR126_uc010khe.2_Silent_p.V417V|GPR126_uc010khf.2_Silent_p.V389V	NM_020455	NP_065188	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126 alpha 1	417	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		TATCCGTAGTGATTCAGAACA	0.308													5	78					0	0	0.001984	0	0
SYNE1	23345	broad.mit.edu	37	6	152708213	152708213	+	Silent	SNP	A	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:152708213A>T	uc010kiw.2	-	54	9083	c.8481T>A	c.(8479-8481)GTT>GTA	p.V2827V	SYNE1_uc003qot.3_Silent_p.V2834V|SYNE1_uc003qou.3_Silent_p.V2827V|SYNE1_uc010kjb.1_Silent_p.V2810V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2827	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TAACCTTGGCAACAGTCATTA	0.333										HNSCC(10;0.0054)			4	62					0	0	0.009096	0	0
SYNE1	23345	broad.mit.edu	37	6	152949425	152949425	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:152949425G>A	uc010kiw.2	-	3	644	c.42C>T	c.(40-42)ATC>ATT	p.I14I	SYNE1_uc003qot.3_Silent_p.I14I|SYNE1_uc003qou.3_Silent_p.I14I|SYNE1_uc010kjb.1_Silent_p.I14I|SYNE1_uc003qpa.1_Silent_p.I14I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	14	Actin-binding.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCACATTGGCGATATCCCGAG	0.502										HNSCC(10;0.0054)			8	131					0	0	0.006214	0	0
ARID1B	57492	broad.mit.edu	37	6	157522413	157522413	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:157522413C>T	uc003qqn.2	+	18	4783	c.4631C>T	c.(4630-4632)TCC>TTC	p.S1544F	ARID1B_uc003qqo.2_Missense_Mutation_p.S1504F|ARID1B_uc003qqp.2_Missense_Mutation_p.S1491F	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1549	Pro-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		TTCCAGCGCTCCCTGGAGAAC	0.617													5	121					0	0	0.000602	0	0
TAGAP	117289	broad.mit.edu	37	6	159457252	159457252	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:159457252C>T	uc003qrz.2	-	10	2135	c.1803G>A	c.(1801-1803)CAG>CAA	p.Q601Q	TAGAP_uc011eft.1_Silent_p.Q538Q|TAGAP_uc003qsa.2_Silent_p.Q423Q	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	601					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		CTGCCGGGCCCTGCATGGCCT	0.652													4	50					0	0	0.009096	0	0
LPA	4018	broad.mit.edu	37	6	161012037	161012037	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:161012037C>T	uc003qtl.2	-	24	3846	c.3726G>A	c.(3724-3726)CTG>CTA	p.L1242L		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3750	Kringle 33.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GACATTGTGTCAGGTTGCAGT	0.507													5	46					0	0	0.000602	0	0
PLG	5340	broad.mit.edu	37	6	161162437	161162437	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:161162437G>A	uc003qtm.3	+	17	2176	c.2113G>A	c.(2113-2115)GGA>AGA	p.G705R		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	705	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	CACTGGCTGGGGAGAAACCCA	0.458													5	50					0	0	0.001168	0	0
TBP	6908	broad.mit.edu	37	6	170871052	170871052	+	Silent	SNP	G	A	A	rs112083427		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr6:170871052G>A	uc003qxt.2	+	3	460	c.228G>A	c.(226-228)CAG>CAA	p.Q76Q	TBP_uc003qxu.2_Silent_p.Q76Q|TBP_uc011ehf.1_Silent_p.Q56Q|TBP_uc011ehg.1_Silent_p.Q76Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	76	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcaacagcagcagcagcagc	0.159													7	28					0	0	0.001984	0	0
SUN1	23353	broad.mit.edu	37	7	892549	892549	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:892549T>G	uc011jvp.1	+	10	1092	c.1013T>G	c.(1012-1014)GTG>GGG	p.V338G	GET4_uc003sjj.1_RNA|SUN1_uc003sjf.2_Missense_Mutation_p.V255G|SUN1_uc011jvq.1_Missense_Mutation_p.V235G|SUN1_uc003sjg.2_Missense_Mutation_p.V243G|SUN1_uc011jvr.1_Missense_Mutation_p.V147G|SUN1_uc003sji.2_Missense_Mutation_p.V176G|SUN1_uc003sjk.2_5'UTR	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	365	Perinuclear space.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						CCCCAGGACGTGTTTAAACCC	0.557													3	72					0	0	0.001168	0	0
SUN1	23353	broad.mit.edu	37	7	909027	909027	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:909027C>T	uc011jvp.1	+	18	2101	c.2022C>T	c.(2020-2022)TCC>TCT	p.S674S	GET4_uc003sjj.1_Intron|SUN1_uc003sjf.2_Silent_p.S591S|SUN1_uc011jvq.1_Silent_p.S571S|SUN1_uc003sjg.2_Silent_p.S579S|SUN1_uc011jvr.1_Silent_p.S472S|SUN1_uc003sji.2_Silent_p.S512S|SUN1_uc003sjk.2_Silent_p.S313S	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	701	Perinuclear space.|SUN.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						TTAAAGGCTCCCAGGGGTACC	0.547													10	151					0	0	0.010729	0	0
CHST12	55501	broad.mit.edu	37	7	2473134	2473134	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:2473134C>T	uc003smc.2	+	2	995	c.860C>T	c.(859-861)TCG>TTG	p.S287L	CHST12_uc003smd.2_Missense_Mutation_p.S287L	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	287	Lumenal (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		CTGCCCGCCTCGGCGCGCGAG	0.652													4	68					0	0	0.009096	0	0
CARD11	84433	broad.mit.edu	37	7	2987263	2987263	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:2987263C>T	uc003smv.2	-	3	570	c.166G>A	c.(166-168)GAT>AAT	p.D56N		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	56	CARD.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TCATCTTCATCCTGCTCATCA	0.547			Mis		DLBCL								7	106					0	0	0.001984	0	0
MMD2	221938	broad.mit.edu	37	7	4965083	4965083	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:4965083G>A	uc003sno.3	-	2	324	c.128C>T	c.(127-129)GCT>GTT	p.A43V	MMD2_uc003snl.1_RNA|MMD2_uc003snn.3_Missense_Mutation_p.A43V|MMD2_uc010ksq.2_Missense_Mutation_p.A43V	NM_001100600	NP_001094070	Q8IY49	PAQRA_HUMAN	monocyte to macrophage	43	Helical; (Potential).					integral to membrane	receptor activity			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.097)|OV - Ovarian serous cystadenocarcinoma(56;3.4e-14)		CCAACTCACAGCATGGGTGGC	0.587													6	113					0	0	0.001984	0	0
STK31	56164	broad.mit.edu	37	7	23793998	23793998	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:23793998G>A	uc003sws.3	+	10	1265	c.1198G>A	c.(1198-1200)GGG>AGG	p.G400R	STK31_uc003swt.3_Missense_Mutation_p.G377R|STK31_uc011jze.1_Missense_Mutation_p.G400R|STK31_uc010kuq.2_Missense_Mutation_p.G377R	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	400							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GTTGGATGAAGGGTGCTTTAC	0.373													6	83					0	0	0.001984	0	0
STK31	56164	broad.mit.edu	37	7	23808714	23808714	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:23808714G>A	uc003sws.3	+	12	1584	c.1517G>A	c.(1516-1518)AGA>AAA	p.R506K	STK31_uc003swt.3_Missense_Mutation_p.R483K|STK31_uc011jze.1_Missense_Mutation_p.R506K|STK31_uc010kuq.2_Missense_Mutation_p.R483K	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	506							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TGTGATAAAAGAGAGGAGTTC	0.403													6	83					0	0	0.001984	0	0
CREB5	9586	broad.mit.edu	37	7	28610108	28610108	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:28610108G>A	uc003szq.2	+	5	807	c.417G>A	c.(415-417)CAG>CAA	p.Q139Q	CREB5_uc003szo.2_Silent_p.Q106Q|CREB5_uc003szr.2_Silent_p.Q132Q	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	139					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						CGTCGCCTCAGTCCAGCTCTG	0.617													22	429					0	0	0.012319	0	0
PDE1C	5137	broad.mit.edu	37	7	31918640	31918640	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:31918640G>A	uc003tcm.1	-	4	863	c.394C>T	c.(394-396)CAC>TAC	p.H132Y	PDE1C_uc003tcn.1_Missense_Mutation_p.H132Y|PDE1C_uc003tco.1_Missense_Mutation_p.H192Y|PDE1C_uc003tcr.2_Missense_Mutation_p.H132Y|PDE1C_uc003tcs.2_Missense_Mutation_p.H132Y	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	132					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TGCACTGCGTGAACGATGCTC	0.527													6	98					0	0	0.001984	0	0
NPSR1	387129	broad.mit.edu	37	7	34888237	34888237	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:34888237C>T	uc003teg.1	+	8	1115	c.987C>T	c.(985-987)ATC>ATT	p.I329I	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.I329I|NPSR1_uc010kwt.1_Silent_p.I176I|NPSR1_uc010kwu.1_Silent_p.I119I|NPSR1_uc010kwv.1_Silent_p.I263I|NPSR1_uc003tei.1_Silent_p.I329I|NPSR1_uc010kww.1_Silent_p.I318I|NPSR1_uc011kar.1_Silent_p.I263I	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	329	Helical; Name=7; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	ACCCCCTCATCTACTGTGTCT	0.517													7	154					0	0	0.003080	0	0
TBX20	57057	broad.mit.edu	37	7	35242110	35242110	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:35242110G>A	uc011kas.1	-	8	1287	c.1276C>T	c.(1276-1278)CAG>TAG	p.Q426*		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	426						nucleus	DNA binding			central_nervous_system(1)	1						GGCCCCTGCTGAAAATAGTGA	0.517													3	5					0	0	0.004672	0	0
HECW1	23072	broad.mit.edu	37	7	43436449	43436449	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:43436449G>A	uc003tid.1	+	7	1197	c.592G>A	c.(592-594)GGA>AGA	p.G198R	HECW1_uc011kbi.1_Missense_Mutation_p.G198R|HECW1_uc003tie.1_Missense_Mutation_p.G230R	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	198	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GACCGTCCAAGGACAAGGAAG	0.418													6	70					0	0	0.001168	0	0
ZPBP	11055	broad.mit.edu	37	7	50121463	50121463	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:50121463G>A	uc003tou.2	-	3	311	c.241C>T	c.(241-243)CCA>TCA	p.P81S	ZPBP_uc011kci.1_Missense_Mutation_p.P7S|ZPBP_uc010kyw.2_Missense_Mutation_p.P81S	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	81					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					AACACGTGTGGACTCTTTTGA	0.358													4	45					0	0	0.009096	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657888	72657888	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:72657888A>C	uc003txs.1	-	13	2024	c.1096T>G	c.(1096-1098)TTC>GTC	p.F366V	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						tcaaccaagaaggccaggtct	0													4	111					0	0	0.000602	0	0
MGC26647	219557	broad.mit.edu	37	7	88424246	88424246	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:88424246G>A	uc003ujv.2	-	2	193	c.11C>T	c.(10-12)TCG>TTG	p.S4L	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	4											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			GTTATGGACCGAAAAGGACAT	0.418													6	99					0	0	0.001168	0	0
C7orf63	79846	broad.mit.edu	37	7	89938617	89938617	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:89938617G>A	uc010lep.2	+	22	2842	c.2591G>A	c.(2590-2592)AGA>AAA	p.R864K	C7orf63_uc011khj.1_Missense_Mutation_p.R846K|C7orf63_uc011khk.1_Missense_Mutation_p.R380K	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	864							binding			ovary(1)	1						GAAGCCTCCAGATACCATAAA	0.308													5	85					0	0	0.001168	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95616402	95616402	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:95616402C>T	uc003uoc.3	+	9	1106	c.829C>T	c.(829-831)CGT>TGT	p.R277C	DYNC1I1_uc003uod.3_Missense_Mutation_p.R260C|DYNC1I1_uc003uob.2_Missense_Mutation_p.R240C|DYNC1I1_uc003uoe.3_Missense_Mutation_p.R257C|DYNC1I1_uc010lfl.2_Missense_Mutation_p.R266C	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	277					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			TTCTTTCAATCGTCAGTTCTA	0.448													8	261					0	0	0.003080	0	0
ZAN	7455	broad.mit.edu	37	7	100344181	100344181	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:100344181G>A	uc003uwj.2	+	8	952	c.787G>A	c.(787-789)GAC>AAC	p.D263N	ZAN_uc003uwk.2_Missense_Mutation_p.D263N|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	263	MAM 2.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CATGCTCCTGGACCCCAAGAA	0.587													5	58					0	0	0.000602	0	0
MUC17	140453	broad.mit.edu	37	7	100681341	100681341	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:100681341C>T	uc003uxp.1	+	3	6697	c.6644C>T	c.(6643-6645)CCT>CTT	p.P2215L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2215	Extracellular (Potential).|35.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACCTCAACTCCTAGTGAAGGA	0.502													19	372					0	0	0.012319	0	0
MUC17	140453	broad.mit.edu	37	7	100682054	100682054	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:100682054G>A	uc003uxp.1	+	3	7410	c.7357G>A	c.(7357-7359)GAA>AAA	p.E2453K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2453	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|39.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACCTCCTAGTGAAGGAACCAC	0.537													18	364					0	0	0.006122	0	0
MUC17	140453	broad.mit.edu	37	7	100685192	100685192	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:100685192C>T	uc003uxp.1	+	3	10548	c.10495C>T	c.(10495-10497)CCT>TCT	p.P3499S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3499	Extracellular (Potential).|Ser-rich.|57.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAATTCATCTCCTACAACTGC	0.517													12	238					0	0	0.013537	0	0
RELN	5649	broad.mit.edu	37	7	103163959	103163959	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:103163959G>A	uc003vca.2	-	47	7529	c.7369C>T	c.(7369-7371)CGT>TGT	p.R2457C	RELN_uc010liz.2_Missense_Mutation_p.R2457C	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2457					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TGATGCCAACGGAAACGAGTG	0.453													4	66					0	0	0.000602	0	0
RINT1	60561	broad.mit.edu	37	7	105183011	105183011	+	Missense_Mutation	SNP	G	A	A	rs139214585	by1000genomes	TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:105183011G>A	uc003vda.1	+	4	661	c.430G>A	c.(430-432)GAT>AAT	p.D144N	RINT1_uc010ljj.1_Intron	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	144					cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						TTGGATGGACGATCTTGGAAC	0.413													5	76					0	0	0.001984	0	0
LAMB4	22798	broad.mit.edu	37	7	107704300	107704300	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:107704300C>T	uc010ljo.1	-	22	3051	c.2967G>A	c.(2965-2967)GGG>GGA	p.G989G	LAMB4_uc003vey.2_Silent_p.G989G|LAMB4_uc010ljp.1_5'UTR	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	989	Laminin EGF-like 10.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						GAAGGCACTCCCCTGTTACCC	0.507													5	104					0	0	0.001168	0	0
LAMB4	22798	broad.mit.edu	37	7	107748102	107748102	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:107748102C>T	uc010ljo.1	-	6	649	c.565G>A	c.(565-567)GAT>AAT	p.D189N	LAMB4_uc003vey.2_Missense_Mutation_p.D189N	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	189	Laminin N-terminal.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						GGTTCAATATCCGAGTATTTG	0.348													4	62					0	0	0.001168	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117431534	117431534	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:117431534G>A	uc003vjf.2	-	4	1808	c.1716C>T	c.(1714-1716)GCC>GCT	p.A572A		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	572										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		CTGTGTTCGAGGCCCTGCTGC	0.507													5	98					0	0	0.000602	0	0
SLC13A1	6561	broad.mit.edu	37	7	122765666	122765666	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:122765666G>A	uc003vkm.2	-	11	1222	c.1197C>T	c.(1195-1197)ATC>ATT	p.I399I	SLC13A1_uc010lks.2_Silent_p.I275I	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	399	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	TCTTAGCTGGGATAAGAAAGA	0.328													4	146					0	0	0.001168	0	0
PAX4	5078	broad.mit.edu	37	7	127253547	127253547	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:127253547C>T	uc010lld.1	-	5	784	c.578G>A	c.(577-579)GGA>GAA	p.G193E	PAX4_uc003vmf.2_Missense_Mutation_p.G191E|PAX4_uc003vmg.1_Missense_Mutation_p.G193E|PAX4_uc003vmh.2_Missense_Mutation_p.G191E	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	201	Homeobox.				cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGCCAGCTTTCCACGGGCCAC	0.592													4	64					0	0	0.009096	0	0
IMPDH1	3614	broad.mit.edu	37	7	128038621	128038621	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:128038621G>A	uc011kol.1	-	7	772	c.666C>T	c.(664-666)ATC>ATT	p.I222I	IMPDH1_uc011kom.1_Silent_p.I217I|IMPDH1_uc003vmt.2_Silent_p.I197I|IMPDH1_uc003vmu.2_Silent_p.I307I|IMPDH1_uc003vmw.2_Silent_p.I297I|IMPDH1_uc011kon.1_Silent_p.I274I|IMPDH1_uc003vmv.2_Silent_p.I271I|IMPDH1_uc003vmx.2_Silent_p.I230I|IMPDH1_uc003vmy.2_Silent_p.I238I	NM_001142573	NP_001136045	P20839	IMDH1_HUMAN	inosine monophosphate dehydrogenase 1 isoform e	222	CBS 2.				GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	DNA binding|IMP dehydrogenase activity|metal ion binding			skin(2)|lung(1)|central_nervous_system(1)	4					Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)|Ribavirin(DB00811)|Thioguanine(DB00352)	CGGTGCGGGCGATGATGGCCA	0.582											OREG0018292	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	127					0	0	0.003080	0	0
PLXNA4	91584	broad.mit.edu	37	7	131866242	131866242	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:131866242G>A	uc003vra.3	-	18	3619	c.3390C>T	c.(3388-3390)ATC>ATT	p.I1130I		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1130	Extracellular (Potential).|IPT/TIG 3.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCTTGTTGAGGATGAGCAGGG	0.592													6	129					0	0	0.003080	0	0
PLXNA4	91584	broad.mit.edu	37	7	131878833	131878833	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:131878833G>A	uc003vra.3	-	14	3073	c.2844C>T	c.(2842-2844)CTC>CTT	p.L948L		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	948	IPT/TIG 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGAAGTAATAGAGCTGTGAGG	0.582													4	51					0	0	0.000602	0	0
PRSS37	136242	broad.mit.edu	37	7	141537835	141537835	+	Silent	SNP	G	A	A	rs149011966		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:141537835G>A	uc003vws.1	-	3	627	c.255C>T	c.(253-255)ATC>ATT	p.I85I	PRSS37_uc011krk.1_Silent_p.I72I|PRSS37_uc011krl.1_Silent_p.I85I|PRSS37_uc003vwt.1_Silent_p.I42I	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	85	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity	p.I85I(1)		skin(1)	1						AGTAGCGGACGATCTGAATGG	0.507													11	165					0	0	0.002450	0	0
OR9A4	130075	broad.mit.edu	37	7	141618723	141618723	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:141618723C>T	uc003vwu.1	+	1	48	c.48C>T	c.(46-48)TTC>TTT	p.F16F		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					TCCTTGGCTTCCCTGGCTCTG	0.378													8	147					0	0	0.004482	0	0
OR9A4	130075	broad.mit.edu	37	7	141619422	141619422	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:141619422G>A	uc003vwu.1	+	1	747	c.747G>A	c.(745-747)GTG>GTA	p.V249V		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					CCTGTGTTGTGATTGGCTACG	0.502													8	66					0	0	0.003080	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673373	141673373	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:141673373C>T	uc003vwx.1	-	1	201	c.117G>A	c.(115-117)GTG>GTA	p.V39V		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	39	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					CCCAAAAATTCACCAAGAAAA	0.493													6	76					0	0	0.001168	0	0
OR6V1	346517	broad.mit.edu	37	7	142749644	142749644	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:142749644C>T	uc011ksv.1	+	1	207	c.207C>T	c.(205-207)ATC>ATT	p.I69I		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TGCTGGAGATCTTGGTAACCA	0.493													7	184					0	0	0.003080	0	0
OR2A2	442361	broad.mit.edu	37	7	143807056	143807056	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:143807056C>T	uc011ktz.1	+	1	381	c.381C>T	c.(379-381)CAC>CAT	p.H127H		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CCATCTGCCACCCTTTCCAGT	0.473													5	109					0	0	0.000602	0	0
GIMAP8	155038	broad.mit.edu	37	7	150163851	150163851	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:150163851G>A	uc003whj.2	+	2	395	c.65G>A	c.(64-66)GGA>GAA	p.G22E		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	22	GTP (Potential).					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		TGCCGCTCGGGAAAAAGTGCC	0.527													4	49					0	0	0.009096	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174698	150174698	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:150174698C>T	uc003whj.2	+	5	2158	c.1828C>T	c.(1828-1830)CAG>TAG	p.Q610*		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	610	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		AGGCCAGGCCCAGGAAACCCA	0.458													5	122					0	0	0.001168	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269887	150269887	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:150269887C>T	uc003whl.2	+	3	811	c.729C>T	c.(727-729)CTC>CTT	p.L243L	GIMAP4_uc011kuu.1_Silent_p.L104L|GIMAP4_uc011kuv.1_Silent_p.L257L	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	243	Potential.						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGCAAGAACTCCACAGAGTGG	0.483													4	32					0	0	0.009096	0	0
GIMAP6	474344	broad.mit.edu	37	7	150327203	150327203	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:150327203G>A	uc003whn.2	-	2	452	c.28C>T	c.(28-30)CCC>TCC	p.P10S	GIMAP6_uc003whm.2_Silent_p.F4F	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	10							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTCTCCTGGGGAATTTGTTCA	0.428													7	102					0	0	0.001984	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439461	150439461	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:150439461C>T	uc003whr.1	+	3	586	c.234C>T	c.(232-234)GTC>GTT	p.V78V	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	78	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGAGGAAAGTCCTGGTGGTTG	0.592													5	68					0	0	0.001168	0	0
SLC4A2	6522	broad.mit.edu	37	7	150764057	150764057	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:150764057C>T	uc003wit.3	+	7	1199	c.943C>T	c.(943-945)CGG>TGG	p.R315W	SLC4A2_uc011kve.1_Missense_Mutation_p.R306W|SLC4A2_uc003wiu.3_Missense_Mutation_p.R301W	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	315	Cytoplasmic (Potential).|Pro-rich.				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCCCGACCCCGGGCCCCCCA	0.637													4	81					0	0	0.000602	0	0
CSMD1	64478	broad.mit.edu	37	8	2813237	2813237	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:2813237C>T	uc011kwk.1	-	64	10261	c.9871G>A	c.(9871-9873)GAT>AAT	p.D3291N	CSMD1_uc011kwj.1_Missense_Mutation_p.D2620N|CSMD1_uc010lrg.2_Missense_Mutation_p.D1182N	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3291	Sushi 28.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTAGGAAGATCGATGGCTCTC	0.473													6	94					0	0	0.001168	0	0
AGPAT5	55326	broad.mit.edu	37	8	6599221	6599221	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:6599221C>T	uc003wqo.2	+	5	847	c.535C>T	c.(535-537)CCA>TCA	p.P179S	AGPAT5_uc011kwm.1_Intron	NM_018361	NP_060831	Q9NUQ2	PLCE_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 5	179					phospholipid biosynthetic process	integral to membrane|mitochondrion	1-acylglycerol-3-phosphate O-acyltransferase activity				0			STAD - Stomach adenocarcinoma(24;0.0578)	READ - Rectum adenocarcinoma(644;0.156)|COAD - Colon adenocarcinoma(149;0.191)		AAGGTATAATCCAGAGCAAAC	0.338													5	120					0	0	0.001168	0	0
TUSC3	7991	broad.mit.edu	37	8	15519760	15519760	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:15519760C>T	uc003wwt.2	+	5	873	c.663C>T	c.(661-663)AAC>AAT	p.N221N	TUSC3_uc003wwr.2_Silent_p.N221N|TUSC3_uc003wws.2_Silent_p.N221N|TUSC3_uc003wwu.2_Silent_p.N221N|TUSC3_uc003wwv.2_Silent_p.N221N|TUSC3_uc003www.2_Silent_p.N221N|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Silent_p.N221N	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	221					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		GAAGGAACAACTTGGAGTTCA	0.403													6	111					0	0	0.001984	0	0
ADAM28	10863	broad.mit.edu	37	8	24157538	24157538	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:24157538C>T	uc003xdy.2	+	2	181	c.98C>T	c.(97-99)CCT>CTT	p.P33L	ADAM28_uc003xdx.2_Missense_Mutation_p.P33L|ADAM28_uc011kzz.1_5'UTR|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	33					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GTGGTTTATCCTATAAGACTT	0.368													4	98					0	0	0.000602	0	0
RP1	6101	broad.mit.edu	37	8	55541534	55541534	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:55541534G>A	uc003xsd.1	+	4	5240	c.5092G>A	c.(5092-5094)GAG>AAG	p.E1698K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1698					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGAATTCCAGGAGGAAAGACA	0.403													4	81					0	0	0.009096	0	0
HNF4G	3174	broad.mit.edu	37	8	76465357	76465357	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:76465357G>A	uc003yaq.2	+	6	699	c.429G>A	c.(427-429)ATG>ATA	p.M143I	HNF4G_uc003yar.2_Missense_Mutation_p.M180I	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	143					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			GTGAATCTATGAAACAGCAGC	0.368													4	60					0	0	0.009096	0	0
POP1	10940	broad.mit.edu	37	8	99146184	99146184	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:99146184C>T	uc003yij.3	+	6	843	c.743C>T	c.(742-744)TCC>TTC	p.S248F	POP1_uc011lgv.1_Missense_Mutation_p.S248F|POP1_uc003yik.2_Missense_Mutation_p.S248F	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	248					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			CAGGATTTATCCTATTACTGT	0.388													6	86					0	0	0.001984	0	0
SPAG1	6674	broad.mit.edu	37	8	101243516	101243516	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:101243516G>A	uc003yjh.1	+	15	2074	c.1988G>A	c.(1987-1989)AGA>AAA	p.R663K	SPAG1_uc003yji.1_Missense_Mutation_p.R663K	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	663	TPR 8.				single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		TATACAAACAGGCAAGTTCTT	0.229													6	78					0	0	0.001168	0	0
SLC30A8	169026	broad.mit.edu	37	8	118159306	118159306	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:118159306A>T	uc003yoh.2	+	2	415	c.185A>T	c.(184-186)AAG>ATG	p.K62M	SLC30A8_uc010mcz.2_Missense_Mutation_p.K13M|SLC30A8_uc011lia.1_Missense_Mutation_p.K13M|SLC30A8_uc003yog.2_Missense_Mutation_p.K13M	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	62	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			CCCACAGAAAAGGGGGCGAAT	0.512													21	448					0	0	0.010504	0	0
COL14A1	7373	broad.mit.edu	37	8	121381652	121381652	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:121381652C>T	uc003yox.2	+	47	5504	c.5239C>T	c.(5239-5241)CCT>TCT	p.P1747S	COL14A1_uc003yoz.2_Missense_Mutation_p.P712S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1747	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TCTGGGGGTTCCTGGACCCCA	0.597													7	75					0	0	0.001984	0	0
PHF20L1	51105	broad.mit.edu	37	8	133790096	133790096	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:133790096C>T	uc003ytt.2	+	2	347	c.22C>T	c.(22-24)CGC>TGC	p.R8C	PHF20L1_uc003ytr.2_Missense_Mutation_p.R8C|PHF20L1_uc010mdv.2_Missense_Mutation_p.R8C|PHF20L1_uc003yts.2_Missense_Mutation_p.R8C|PHF20L1_uc011lja.1_Missense_Mutation_p.R8C|PHF20L1_uc003ytu.1_RNA|PHF20L1_uc003ytq.2_Missense_Mutation_p.R8C	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	8							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			GCCCCCAAATCGCCCTGGAAT	0.368													5	87					0	0	0.001168	0	0
KCNK9	51305	broad.mit.edu	37	8	140630564	140630564	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:140630564G>A	uc003yvf.1	-	2	1126	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	KCNK9_uc003yvg.1_Silent_p.I354I|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	354	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			ACCCAGGAGAGATGGAGCTAA	0.502													5	112					0	0	0.001168	0	0
KCNK9	51305	broad.mit.edu	37	8	140630831	140630831	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:140630831G>A	uc003yvf.1	-	2	859	c.795C>T	c.(793-795)GCC>GCT	p.A265A	KCNK9_uc003yvg.1_Silent_p.A265A|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	265	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			TGCGGTTTCCGGCGAGGGATG	0.627													6	65					0	0	0.001168	0	0
VPS28	51160	broad.mit.edu	37	8	145650164	145650164	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr8:145650164G>A	uc003zcr.1	-	6	392	c.339C>T	c.(337-339)GAC>GAT	p.D113D	VPS28_uc003zcs.1_Silent_p.D113D|VPS28_uc003zct.1_Silent_p.D113D	NM_016208	NP_057292	Q9UK41	VPS28_HUMAN	vacuolar protein sorting 28 isoform 1	113	VPS28 N-terminal.				cellular membrane organization|endosome transport|negative regulation of protein ubiquitination|protein transport	cytosol|late endosome membrane|plasma membrane	protein binding				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			TGATGGGCCGGTCCTCCTTGA	0.667													6	91					0	0	0.001168	0	0
RCL1	10171	broad.mit.edu	37	9	4826886	4826886	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:4826886C>T	uc003zis.2	+	3	495	c.237C>T	c.(235-237)CTC>CTT	p.L79L	RCL1_uc003zit.2_Intron|RCL1_uc010mhk.1_Intron	NM_005772	NP_005763	Q9Y2P8	RCL1_HUMAN	RNA terminal phosphate cyclase-like 1	79					ribosome biogenesis|RNA processing	nucleolus	RNA-3'-phosphate cyclase activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0206)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0244)		AGCCTGGCCTCCTGTATGGTG	0.438													12	190					0	0	0.010729	0	0
TAF1L	138474	broad.mit.edu	37	9	32632226	32632226	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:32632226C>T	uc003zrg.1	-	1	3442	c.3352G>A	c.(3352-3354)GAA>AAA	p.E1118K	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1118					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TTTCCCATTTCTTCAAAGTCA	0.453													4	75					0	0	0.009096	0	0
FLJ46321	389763	broad.mit.edu	37	9	84605862	84605862	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:84605862G>A	uc004amn.2	+	4	524	c.477G>A	c.(475-477)TTG>TTA	p.L159L		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	159						integral to membrane					0						TGTCCCCTTTGGCTTCTTCGG	0.567													5	48					0	0	0.001168	0	0
NTRK2	4915	broad.mit.edu	37	9	87359971	87359971	+	Missense_Mutation	SNP	G	A	A	rs142393662		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:87359971G>A	uc004aoa.1	+	13	2217	c.1279G>A	c.(1279-1281)GGT>AGT	p.G427S	NTRK2_uc004anv.1_Missense_Mutation_p.G414S|NTRK2_uc004any.1_Missense_Mutation_p.G427S|NTRK2_uc004anz.1_Missense_Mutation_p.G427S|NTRK2_uc011lsz.1_Missense_Mutation_p.G427S|NTRK2_uc011lta.1_Missense_Mutation_p.G427S|NTRK2_uc004aob.1_Missense_Mutation_p.G427S|NTRK2_uc011ltb.1_Missense_Mutation_p.G271S	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	427	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						TGATAAAACCGGTCGGGAACA	0.458										TSP Lung(25;0.17)			5	88					0	0	0.000602	0	0
COL15A1	1306	broad.mit.edu	37	9	101797632	101797632	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:101797632G>A	uc004azb.1	+	19	2427	c.2221G>A	c.(2221-2223)GAT>AAT	p.D741N		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	741	Nonhelical region 3 (NC3).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CCTTCCCCAGGATACCGAAGG	0.328													5	78					0	0	0.000602	0	0
INVS	27130	broad.mit.edu	37	9	103035155	103035155	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:103035155C>T	uc004bap.1	+	12	1793	c.1581C>T	c.(1579-1581)CCC>CCT	p.P527P	INVS_uc010mta.1_Silent_p.P431P|INVS_uc011lve.1_Silent_p.P431P|INVS_uc004bao.1_Silent_p.P527P|INVS_uc004baq.1_Silent_p.P431P|INVS_uc004bar.1_Silent_p.P431P|INVS_uc010mtb.1_Silent_p.P201P	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	527	ANK 16.				negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				GATACACACCCCTTGATTATG	0.418													4	141					0	0	0.001168	0	0
LPPR1	54886	broad.mit.edu	37	9	104032238	104032238	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:104032238G>A	uc004bbb.2	+	3	539	c.140G>A	c.(139-141)GGA>GAA	p.G47E	LPPR1_uc011lvi.1_Missense_Mutation_p.G23E|LPPR1_uc004bbc.2_Missense_Mutation_p.G47E|LPPR1_uc010mtc.2_Missense_Mutation_p.G31E	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	47						integral to membrane	catalytic activity				0						CATATCCAAGGATTCTTCTGT	0.502													6	69					0	0	0.001168	0	0
OR13C4	138804	broad.mit.edu	37	9	107288987	107288987	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:107288987G>A	uc011lvn.1	-	1	504	c.504C>T	c.(502-504)TTC>TTT	p.F168F		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	168	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTTCCCACAGAAAGGCCATC	0.388													5	80					0	0	0.000602	0	0
DBC1	1620	broad.mit.edu	37	9	121929525	121929525	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:121929525G>A	uc004bkc.2	-	8	2579	c.2123C>T	c.(2122-2124)CCT>CTT	p.P708L		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	708					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GGCCACAGGAGGGGCCAGGCG	0.562													5	100					0	0	0.000602	0	0
OR1L8	138881	broad.mit.edu	37	9	125330478	125330478	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:125330478G>A	uc004bmp.1	-	1	279	c.279C>T	c.(277-279)ATC>ATT	p.I93I		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						CAGCATAGGAGATGGTCTTCT	0.463													8	78					0	0	0.003080	0	0
OR1L1	26737	broad.mit.edu	37	9	125424061	125424061	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:125424061G>A	uc011lza.1	+	1	217	c.217G>A	c.(217-219)GAT>AAT	p.D73N		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	73	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TCGACCTGAGGATCAGAAGCC	0.478													4	49					0	0	0.009096	0	0
CRB2	286204	broad.mit.edu	37	9	126132728	126132728	+	Missense_Mutation	SNP	C	T	T	rs138891622		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:126132728C>T	uc004bnx.1	+	7	1488	c.1396C>T	c.(1396-1398)CGC>TGC	p.R466C	CRB2_uc004bnw.1_Missense_Mutation_p.R466C	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	466	Extracellular (Potential).|Laminin G-like 1.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						ACTGAGGTTTCGCACCACACT	0.607													4	27					0	0	0.009096	0	0
DBH	1621	broad.mit.edu	37	9	136508583	136508583	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:136508583G>A	uc004cel.2	+	4	802	c.793G>A	c.(793-795)GAA>AAA	p.E265K		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	265	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CCACCACATGGAAGTCTTCCA	0.657													4	61					0	0	0.009096	0	0
FCN2	2220	broad.mit.edu	37	9	137777198	137777198	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:137777198G>A	uc004cfg.1	+	5	425	c.415G>A	c.(415-417)GGA>AGA	p.G139R	FCN2_uc004cfh.1_Missense_Mutation_p.G101R	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	139	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GGACACGGACGGAGGGGGCTG	0.657													3	34					0	0	0.004672	0	0
ENTPD2	954	broad.mit.edu	37	9	139945549	139945549	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr9:139945549C>T	uc004ckw.1	-	5	635	c.579G>A	c.(577-579)CGG>CGA	p.R193R	ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Silent_p.R193R	NM_203468	NP_982293	Q9Y5L3	ENTP2_HUMAN	ectonucleoside triphosphate diphosphohydrolase 2	193	Extracellular (Potential).					integral to membrane	ATP binding				0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GTGTCCCCTTCCGTGGCCGGA	0.677													5	56					0	0	0.001984	0	0
ASMT	438	broad.mit.edu	37	X	1742160	1742160	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:1742160C>T	uc004cqd.2	+	3	343	c.198C>T	c.(196-198)ATC>ATT	p.I66I	ASMT_uc010ncy.2_Silent_p.I66I|ASMT_uc004cqe.2_Silent_p.I66I	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	66					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TGCTGGACATCTGTGTGTCCC	0.612													5	41					0	0	0.000602	0	0
SHROOM2	357	broad.mit.edu	37	X	9900855	9900855	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:9900855C>T	uc004csu.1	+	6	3622	c.3532C>T	c.(3532-3534)CCC>TCC	p.P1178S	SHROOM2_uc004csv.2_Missense_Mutation_p.P13S|SHROOM2_uc011mic.1_Missense_Mutation_p.P13S|SHROOM2_uc004csw.1_Missense_Mutation_p.P13S	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1178					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CCAGTTCGCCCCCCAGAAACT	0.627													3	20					0	0	0.004672	0	0
EGFL6	25975	broad.mit.edu	37	X	13624618	13624618	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:13624618G>A	uc004cvi.2	+	6	881	c.641G>A	c.(640-642)CGA>CAA	p.R214Q	EGFL6_uc004cvj.2_Missense_Mutation_p.R214Q|EGFL6_uc011mik.1_Missense_Mutation_p.R115Q	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	214					cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						ATCAGTGGACGATATGACTGT	0.403													6	55					0	0	0.001984	0	0
BEND2	139105	broad.mit.edu	37	X	18221933	18221933	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:18221933C>T	uc004cyj.3	-	5	749	c.595G>A	c.(595-597)GAA>AAA	p.E199K	BEND2_uc010nfb.2_Missense_Mutation_p.E199K	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	199										ovary(3)|kidney(1)|central_nervous_system(1)	5						AGGTCTGCTTCCTGCAGTTCA	0.488													16	96					0	0	0.003163	0	0
MAP3K15	389840	broad.mit.edu	37	X	19389542	19389542	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:19389542G>A	uc004czk.1	-	24	3277	c.1640C>T	c.(1639-1641)TCA>TTA	p.S547L	MAP3K15_uc004czj.1_Missense_Mutation_p.S507L|MAP3K15_uc004czi.1_Missense_Mutation_p.S6L	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	1072							ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					CTTGAGCTTTGATATTGTGGT	0.527													5	45					0	0	0.001168	0	0
FAM48B2	170067	broad.mit.edu	37	X	24329620	24329620	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:24329620G>A	uc011mjw.1	-	1	1813	c.1813C>T	c.(1813-1815)CCT>TCT	p.P605S		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	605											0						ATTCCTGCAGGAGCGGGGGCA	0.637													5	23					0	0	0.000602	0	0
NR0B1	190	broad.mit.edu	37	X	30322750	30322750	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:30322750G>A	uc004dcf.3	-	2	1374	c.1359C>T	c.(1357-1359)ATC>ATT	p.I453I		NM_000475	NP_000466	P51843	NR0B1_HUMAN	nuclear receptor subfamily 0, group B, member 1	453	Ligand-binding (By similarity).				adrenal gland development|hypothalamus development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of steroid hormone receptor signaling pathway|pituitary gland development|protein localization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid biosynthetic process	cytoplasm|membrane fraction|nucleoplasm|nucleus|polysomal ribosome	AF-2 domain binding|DNA hairpin binding|ligand-regulated transcription factor activity|protein domain specific binding|protein homodimerization activity|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|steroid hormone receptor binding|transcription corepressor activity|transcription factor binding			ovary(1)|lung(1)	2					Dexamethasone(DB01234)|Tretinoin(DB00755)	TGACTGTGCCGATGATGGGCC	0.458													7	61					0	0	0.001984	0	0
FAM47C	442444	broad.mit.edu	37	X	37027685	37027685	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:37027685C>T	uc004ddl.1	+	1	1216	c.1202C>T	c.(1201-1203)CCT>CTT	p.P401L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	401										ovary(3)	3						GGAGTGTCTCCTCTCTTCCCG	0.617													4	32					0	0	0.001168	0	0
SYTL5	94122	broad.mit.edu	37	X	37893191	37893191	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:37893191G>A	uc004ddu.2	+	3	583	c.49G>A	c.(49-51)GAG>AAG	p.E17K	SYTL5_uc004ddv.2_Missense_Mutation_p.E17K|SYTL5_uc004ddx.2_Missense_Mutation_p.E17K	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	17	RabBD.				intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						ATTAGATCATGAGAAGGAAAT	0.373													4	25					0	0	0.009096	0	0
ATP6AP2	10159	broad.mit.edu	37	X	40450601	40450601	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:40450601C>T	uc004det.2	+	3	386	c.284C>T	c.(283-285)TCG>TTG	p.S95L	ATP6AP2_uc010nhc.2_RNA|ATP6AP2_uc011mkl.1_Missense_Mutation_p.S19L|ATP6AP2_uc011mkm.1_Missense_Mutation_p.S95L|ATP6AP2_uc011mkn.1_Missense_Mutation_p.S95L	NM_005765	NP_005756	O75787	RENR_HUMAN	ATPase, H+ transporting, lysosomal accessory	95	Extracellular (Potential).				angiotensin maturation|positive regulation of transforming growth factor-beta1 production|regulation of MAPKKK cascade	external side of plasma membrane|integral to membrane	protein binding|receptor activity				0						AGTGTCATTTCGTACCCTTTG	0.428													5	23					0	0	0.000602	0	0
GPR34	2857	broad.mit.edu	37	X	41555476	41555476	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:41555476G>A	uc004dfp.3	+	3	874	c.590G>A	c.(589-591)GGA>GAA	p.G197E	CASK_uc004dfl.3_Intron|CASK_uc004dfm.3_Intron|CASK_uc004dfn.3_Intron|GPR34_uc004dfq.3_Missense_Mutation_p.G197E|GPR34_uc010nhg.2_Missense_Mutation_p.G197E|GPR34_uc004dfr.3_Missense_Mutation_p.G197E	NM_001097579	NP_001091048	Q9UPC5	GPR34_HUMAN	G protein-coupled receptor 34	197	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						CTTAAGAAAGGAGGGCATAAT	0.343													3	19					0	0	0.004672	0	0
ZXDA	7789	broad.mit.edu	37	X	57934541	57934541	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:57934541A>C	uc004dve.2	-	1	2527	c.2314T>G	c.(2314-2316)TTT>GTT	p.F772V		NM_007156	NP_009087	P98168	ZXDA_HUMAN	zinc finger, X-linked, duplicated A	772					positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						GGGAATCCAAACTGGGTTTCT	0.453													6	36					0	0	0.001168	0	0
TAF1	6872	broad.mit.edu	37	X	70598118	70598118	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:70598118T>C	uc004dzu.3	+	7	1015	c.964T>C	c.(964-966)TCC>CCC	p.S322P	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.S343P	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	322	Protein kinase 1.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				GTCCAAATTTTCCCAATCAAC	0.463													3	27					0	0	0.004672	0	0
KIAA2022	340533	broad.mit.edu	37	X	73964093	73964093	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:73964093G>A	uc004eby.2	-	3	916	c.299C>T	c.(298-300)TCC>TTC	p.S100F		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	100					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AGATGTGAGGGAGATGGCATT	0.512													4	49					0	0	0.009096	0	0
FGF16	8823	broad.mit.edu	37	X	76711796	76711796	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:76711796G>T	uc011mqp.1	+	2	407	c.134G>T	c.(133-135)CGG>CTG	p.R45L		NM_003868	NP_003859	O43320	FGF16_HUMAN	fibroblast growth factor 16	136					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|metabolic process|organ morphogenesis|response to temperature stimulus	extracellular space	growth factor activity			lung(1)	1						TGTGTTTTCCGGGAACAGTTT	0.428													4	68					2.56e-06	2.73881e-06	0.009096	1	0
RBM41	55285	broad.mit.edu	37	X	106331885	106331885	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:106331885G>A	uc004emz.2	-	5	739	c.708C>T	c.(706-708)CTC>CTT	p.L236L	RBM41_uc004emy.1_Silent_p.L236L	NM_018301	NP_060771	Q96IZ5	RBM41_HUMAN	RNA binding motif protein 41	236							nucleotide binding|RNA binding			ovary(1)	1						CCTTGTCCTGGAGTAATGATG	0.493													3	21					0	0	0.004672	0	0
GUCY2F	2986	broad.mit.edu	37	X	108684589	108684589	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:108684589C>T	uc004eod.3	-	7	1968	c.1692G>A	c.(1690-1692)GCG>GCA	p.A564A	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	564	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CCTCATAAATCGCTATGTTGG	0.403													6	90					0	0	0.001168	0	0
PAK3	5063	broad.mit.edu	37	X	110385365	110385365	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:110385365C>T	uc004epa.2	+	2	244	c.217C>T	c.(217-219)CCT>TCT	p.P73S	PAK3_uc010npt.1_Missense_Mutation_p.P73S|PAK3_uc010npu.1_Missense_Mutation_p.P73S|PAK3_uc004eoy.1_5'UTR|PAK3_uc004eoz.2_Missense_Mutation_p.P73S|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.P73S|PAK3_uc010npw.1_Missense_Mutation_p.P73S	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	73	Autoregulatory region (By similarity).|GTPase-binding (By similarity).|CRIB.			P -> S (in Ref. 2).	multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						GATCTCTCTTCCTTCAGACTT	0.413										TSP Lung(19;0.15)			6	104					0	0	0.001984	0	0
LUZP4	51213	broad.mit.edu	37	X	114541098	114541098	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:114541098G>A	uc004eqa.2	+	4	705	c.671G>A	c.(670-672)AGA>AAA	p.R224K	LUZP4_uc004eqb.2_Missense_Mutation_p.R142K	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	224						nucleus				ovary(2)	2						CACTCAGAGAGATCTCATGGT	0.473													6	59					0	0	0.001984	0	0
ODZ1	10178	broad.mit.edu	37	X	123805562	123805562	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:123805562C>T	uc004euj.2	-	6	1203	c.1139G>A	c.(1138-1140)GGA>GAA	p.G380E	ODZ1_uc011muj.1_Missense_Mutation_p.G379E|ODZ1_uc010nqy.2_Missense_Mutation_p.G380E	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	380	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AGAAACTTTTCCTCCAATTGG	0.403													4	61					0	0	0.009096	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185107	127185107	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:127185107G>A	uc004eum.2	-	1	1276	c.1079C>T	c.(1078-1080)TCG>TTG	p.S360L		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	360						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						GAAGTCTGCCGAGGTGACCCA	0.463													10	93					0	0	0.010729	0	0
SAGE1	55511	broad.mit.edu	37	X	134993456	134993456	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:134993456G>A	uc004ezh.2	+	17	2278	c.2111G>A	c.(2110-2112)GGA>GAA	p.G704E	SAGE1_uc010nry.1_Missense_Mutation_p.G673E|SAGE1_uc011mvv.1_Missense_Mutation_p.G328E	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	704										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AATCTGTCAGGAGCTGGTATT	0.468													7	54					0	0	0.001984	0	0
ATP11C	286410	broad.mit.edu	37	X	138820208	138820208	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:138820208C>T	uc004faz.2	-	28	3263	c.3164G>A	c.(3163-3165)AGA>AAA	p.R1055K	ATP11C_uc004fax.2_Missense_Mutation_p.R263K|ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Missense_Mutation_p.R1055K	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	1055	Extracellular (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					AAAATACATTCTCTGTTGCTT	0.343													8	30					0	0	0.008291	0	0
GABRQ	55879	broad.mit.edu	37	X	151806767	151806767	+	Silent	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:151806767C>T	uc004ffp.1	+	1	131	c.111C>T	c.(109-111)TCC>TCT	p.S37S		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	37	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCGAGTTCTCCTCTGCTGTGC	0.632													5	32					0	0	0.001168	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870034	151870034	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:151870034C>T	uc004ffq.1	+	3	918	c.724C>T	c.(724-726)CCC>TCC	p.P242S	MAGEA6_uc004ffr.1_Missense_Mutation_p.P242S|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	242	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CTTCGGGGATCCCAAGAAGCT	0.547													9	107					0	0	0.008291	0	0
SRPK3	26576	broad.mit.edu	37	X	153050922	153050922	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:153050922G>A	uc004fil.2	+	15	1683	c.1651G>A	c.(1651-1653)GAA>AAA	p.E551K	SRPK3_uc004fik.2_Missense_Mutation_p.E617K|SRPK3_uc010nul.2_Missense_Mutation_p.E475K|SRPK3_uc004fin.2_Missense_Mutation_p.E550K|SRPK3_uc004fim.2_Missense_Mutation_p.E517K	NM_014370	NP_055185	Q9UPE1	SRPK3_HUMAN	serine arginine rich protein-specific kinase 3	551	Protein kinase.				cell differentiation|muscle organ development|muscle tissue development		ATP binding|protein serine/threonine kinase activity			pancreas(2)|lung(1)	3	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					GTACATCCCCGAAAAGCGGGC	0.617													4	58					0	0	0.009096	0	0
SLC10A3	8273	broad.mit.edu	37	X	153716270	153716271	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:153716270_153716271CC>TT	uc004flq.2	-	3	1273_1274	c.1009_1010GG>AA	c.(1009-1011)GGC>AAC	p.G337N	UBL4A_uc004flo.2_5'Flank|SLC10A3_uc004flr.2_Missense_Mutation_p.G308N|SLC10A3_uc004flp.2_Missense_Mutation_p.G337N	NM_001142392	NP_001135864	P09131	P3_HUMAN	solute carrier family 10, member 3 isoform 1	337	Helical; (Potential).				organic anion transport	integral to membrane	bile acid:sodium symporter activity			ovary(1)|skin(1)	2	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GATCAGCACGCCCACGGCTATG	0.619													4	48					0	0	0.004672	0	0
CLIC2	1193	broad.mit.edu	37	X	154507273	154507273	+	Silent	SNP	G	A	A			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrX:154507273G>A	uc004fnf.2	-	6	913	c.663C>T	c.(661-663)GCC>GCT	p.A221A		NM_001289	NP_001280	O15247	CLIC2_HUMAN	chloride intracellular channel 2	221	GST C-terminal.|C-terminal.				signal transduction	chloride channel complex|cytoplasm|nucleus	voltage-gated chloride channel activity			large_intestine(1)|ovary(1)|skin(1)	3	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					ATTCTTCACGGGCATAGGCAT	0.408													7	42					0	0	0.003080	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4925237	4925237	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chrY:4925237C>T	uc004fqo.2	+	1	1107	c.373C>T	c.(373-375)CGT>TGT	p.R125C	PCDH11Y_uc010nwg.1_Missense_Mutation_p.R114C|PCDH11Y_uc004fql.1_Missense_Mutation_p.R114C|PCDH11Y_uc004fqm.1_Missense_Mutation_p.R114C|PCDH11Y_uc004fqn.1_Missense_Mutation_p.R125C	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	125	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						TCGCATTGATCGTGAGAAATT	0.443													9	79					0	0	0.006214	0	0
MST1P2	11209	broad.mit.edu	37	1	16974141	16974141	+	RNA	DEL	G	-	-			TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:16974141delG	uc009vow.2	+	5		c.951delG			CROCCL1_uc001azg.1_5'Flank|CROCCL1_uc001azi.1_5'Flank|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						TGGCTTGGCCGGGGAGGTCAG	0.667													2	4	---	---	---	---					
UBXN11	91544	broad.mit.edu	37	1	26608878	26608883	+	In_Frame_Del	DEL	CCGGGA	-	-	rs1134581		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr1:26608878_26608883delCCGGGA	uc001blw.2	-	16	1743_1748	c.1470_1475delTCCCGG	c.(1468-1476)GGTCCCGGC>GGC	p.490_492GPG>G	UBXN11_uc001blz.1_In_Frame_Del_p.457_459GPG>G|UBXN11_uc001blv.2_In_Frame_Del_p.452_454GPG>G|UBXN11_uc001bly.2_In_Frame_Del_p.370_372GPG>G|UBXN11_uc001blx.2_In_Frame_Del_p.248_250GPG>G|UBXN11_uc001bma.2_In_Frame_Del_p.457_459GPG>G|UBXN11_uc001bmb.1_In_Frame_Del_p.490_492GPG>G	NM_183008	NP_892120	Q5T124	UBX11_HUMAN	socius isoform 2	490_492	Pro-rich.|3 X 8 AA tandem repeats of P-G-P-G-P-G-P- S.|1.		Missing.|Missing.			cytoplasm|cytoskeleton				ovary(1)	1						gggactggggccgggaccgggaccgg	0.282													7	38	---	---	---	---					
SSPO	23145	broad.mit.edu	37	7	149515189	149515189	+	Splice_Site	DEL	A	-	-	rs112122477		TCGA-ER-A19A-06A-21D-A197-08	TCGA-ER-A19A-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	53983b06-67c9-4a3d-bd9e-08638e257a95	7e84ded3-0af1-4d76-95db-479d5f5a23e3	g.chr7:149515189delA	uc010lpk.2	+	81	11577	c.11577_splice	c.e81+2	p.E3859_splice		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor						cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GACCTCGAGTAACTGCCCCAG	0.562													10	10	---	---	---	---					
