Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FAM41C	284593	broad.mit.edu	37	1	809732	809732	+	RNA	SNP	T	C	C	rs147199422		TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr1:809732T>C	uc001abt.3	-	2		c.861A>G				NR_027055				Homo sapiens family with sequence similarity 41, member C, mRNA (cDNA clone IMAGE:5201580), partial cds.												0						TGGCCTAGAATTTTCCTTTTC	0.478000													7	77					0	0	0.004007	0	0
LOC440563	440563	broad.mit.edu	37	1	13183427	13183427	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr1:13183427G>A	uc010obg.1	-	1	541	c.446C>T	c.(445-447)TCA>TTA	p.S149L		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	149						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GGTGTTTCCTGATATGCGCTG	0.512000													77	209					0	0	0.014410	0	0
HMGCS2	3158	broad.mit.edu	37	1	120293428	120293428	+	Silent	SNP	G	C	C			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr1:120293428G>C	uc001eid.2	-	9	1575	c.1524C>G	c.(1522-1524)GTC>GTG	p.V508V	HMGCS2_uc010oxj.1_Silent_p.V466V|HMGCS2_uc001eie.2_Silent_p.V416V	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	508					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		ACCACCTTTAGACGGGACGCC	0.537000													230	716					0	0	0.014410	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244000													3	85					0	0	0.004672	0	0
C1orf129	80133	broad.mit.edu	37	1	170959135	170959135	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr1:170959135C>T	uc001ghg.2	+	11	1149	c.1019C>T	c.(1018-1020)CCA>CTA	p.P340L	C1orf129_uc009wvy.2_Missense_Mutation_p.P147L|C1orf129_uc010plz.1_Missense_Mutation_p.P340L	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	340							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TACCCAGTTCCAGCAGACGAG	0.473000													16	17					0	0	0.007413	0	0
TUBB8	347688	broad.mit.edu	37	10	93548	93548	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr10:93548G>A	uc001ifi.2	-	4	784	c.784C>T	c.(784-786)CGG>TGG	p.R262W	TUBB8_uc009xhe.2_Missense_Mutation_p.R225W|TUBB8_uc010pzs.1_Missense_Mutation_p.R190W	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	262					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		AAATGCAGCCGGGGAAACGGG	0.627000													6	31					0	0	0.001168	0	0
PLXDC2	84898	broad.mit.edu	37	10	20432323	20432323	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr10:20432323C>T	uc001iqg.1	+	5	1278	c.641C>T	c.(640-642)TCA>TTA	p.S214L	PLXDC2_uc001iqh.1_Missense_Mutation_p.S165L|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	214	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TCCAGAAATTCAACTGTCAGA	0.358000													40	10					0	0	0.009718	0	0
PLXDC2	84898	broad.mit.edu	37	10	20466284	20466284	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr10:20466284C>T	uc001iqg.1	+	9	1644	c.1007C>T	c.(1006-1008)CCC>CTC	p.P336L	PLXDC2_uc001iqh.1_Missense_Mutation_p.P287L|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	336	Extracellular (Potential).|PSI.					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						AGATGTGGCCCCTGTGTATCT	0.353000													37	8					0	0	0.009718	0	0
LRIT2	340745	broad.mit.edu	37	10	85981769	85981769	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr10:85981769G>A	uc001kcy.2	-	3	1568	c.1560C>T	c.(1558-1560)TCC>TCT	p.S520S	LRIT2_uc010qmc.1_Silent_p.S530S	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	520						integral to membrane				ovary(2)	2						GTTCTCTAAAGGAGCCATCCT	0.597000													64	25					0	0	0.014410	0	0
USH1C	10083	broad.mit.edu	37	11	17547910	17547910	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr11:17547910G>C	uc001mnf.2	-	8	767	c.658C>G	c.(658-660)CGA>GGA	p.R220G	USH1C_uc001mne.2_Missense_Mutation_p.R220G|USH1C_uc009yhb.2_Missense_Mutation_p.R220G|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.R184G	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	220	PDZ 2.				equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						CCAAGGCCTCGGGAGCCTACC	0.617000													9	5					0	0	0.006214	0	0
PAMR1	25891	broad.mit.edu	37	11	35454298	35454298	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr11:35454298G>A	uc001mwg.2	-	11	1812	c.1769C>T	c.(1768-1770)TCC>TTC	p.S590F	PAMR1_uc001mwf.2_Missense_Mutation_p.S607F|PAMR1_uc010rew.1_Missense_Mutation_p.S479F|PAMR1_uc010rex.1_Missense_Mutation_p.S550F	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	590	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CTCCTGGAAGGAAGTGCTGAG	0.597000													18	5					0	0	0.006122	0	0
OR9G4	283189	broad.mit.edu	37	11	56510999	56510999	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr11:56510999G>A	uc010rjo.1	-	1	289	c.289C>T	c.(289-291)CTG>TTG	p.L97L		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CAACTGGCCAGGATTTTGGGG	0.438000													52	83					0	0	0.014410	0	0
CNTN5	53942	broad.mit.edu	37	11	100126527	100126527	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr11:100126527G>A	uc001pga.2	+	17	2380	c.2041G>A	c.(2041-2043)GAA>AAA	p.E681K	CNTN5_uc001pfz.2_Missense_Mutation_p.E681K|CNTN5_uc001pgb.2_Missense_Mutation_p.E607K|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	681	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AATTGTTGAGGAAATAACCGA	0.478000													44	14					0	0	0.014410	0	0
GRIA4	2893	broad.mit.edu	37	11	105795269	105795269	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr11:105795269G>A	uc001pix.2	+	12	2067	c.1621G>A	c.(1621-1623)GAT>AAT	p.D541N	GRIA4_uc001piw.2_Missense_Mutation_p.D541N	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	541	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	TTCCTTCTTGGATCCTCTGGC	0.423000													37	11					0	0	0.005524	0	0
KLRK1	22914	broad.mit.edu	37	12	10560380	10560380	+	Translation_Start_Site	SNP	A	C	C			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr12:10560380A>C	uc001qyc.2	-	1	9	c.-352T>G	c.(-354--350)ATTGT>ATGGT		KLRK1_uc009zhk.2_Translation_Start_Site|KLRK1_uc001qyd.2_Translation_Start_Site|KLRC4_uc001qye.2_Missense_Mutation_p.C117G	NM_007360	NP_031386	P26718	NKG2D_HUMAN	NKG2-D type II integral membrane protein						natural killer cell activation|T cell costimulation	integral to plasma membrane	sugar binding				0						CAATGGCCACAATGACGTGCT	0.328000													4	258					0	0	0.000602	0	0
STOML3	161003	broad.mit.edu	37	13	39550878	39550878	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr13:39550878G>A	uc001uwx.2	-	2	247	c.109C>T	c.(109-111)CTG>TTG	p.L37L	STOML3_uc010tez.1_Silent_p.L28L	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	37	Helical; Signal-anchor for type III membrane protein; (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		ATCACCAACAGGAAAGAGAGG	0.418000													11	17					0	0	0.013537	0	0
TSC22D1	8848	broad.mit.edu	37	13	45149353	45149353	+	Silent	SNP	A	G	G			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr13:45149353A>G	uc001uzn.3	-	1	1349	c.858T>C	c.(856-858)CCT>CCC	p.P286P	TSC22D1_uc001uzo.1_Silent_p.P286P	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	286					transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		TTACAGATGCAGGTGAACCAC	0.418000													3	134					0	0	0.004672	0	0
NID2	22795	broad.mit.edu	37	14	52507401	52507401	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr14:52507401G>A	uc001wzo.2	-	8	2228	c.1994C>T	c.(1993-1995)CCC>CTC	p.P665L	NID2_uc010tqs.1_Missense_Mutation_p.P665L|NID2_uc010tqt.1_Missense_Mutation_p.P665L|NID2_uc001wzp.2_Missense_Mutation_p.P665L	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	665	Nidogen G2 beta-barrel.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					CTCCTTGTAGGGAGAGATGTG	0.353000													63	88					0	0	0.014410	0	0
PELI2	57161	broad.mit.edu	37	14	56746398	56746398	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr14:56746398T>G	uc001xch.2	+	3	498	c.212T>G	c.(211-213)ATC>AGC	p.I71S		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	71					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						tattaGGCTATCAGCTGCAAA	0.378000													33	35					0	0	0.013726	0	0
ADAM6	8755	broad.mit.edu	37	14	106725137	106725137	+	RNA	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr14:106725137C>T	uc010tyt.1	-	589		c.18377G>A								Parts of antibodies, mostly variable regions.												0						CCGCTGATTTCCCCCCCATCG	0.587000													21	65					0	0	0.012319	0	0
ADAM6	8755	broad.mit.edu	37	14	107087369	107087369	+	Splice_Site	SNP	C	G	G	rs59128688	by1000genomes	TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr14:107087369C>G	uc010tyt.1	-	109		c.5047_splice	c.e109-1							Parts of antibodies, mostly variable regions.												0						ACTCCAAACCCTTTCCTGGAG	0.507000													8	33					0	0	0.008291	0	0
OTUD7A	161725	broad.mit.edu	37	15	31862357	31862357	+	Silent	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr15:31862357C>T	uc001zfq.2	-	2	288	c.195G>A	c.(193-195)CAG>CAA	p.Q65Q	OTUD7A_uc001zfr.2_Silent_p.Q65Q|OTUD7A_uc001zfs.1_RNA|OTUD7A_uc010baa.1_Silent_p.Q65Q	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	65						cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		CCTGGCGGAGCTGCTCATAGT	0.567000													37	43					0	0	0.007835	0	0
GLDN	342035	broad.mit.edu	37	15	51676081	51676081	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr15:51676081G>A	uc002aba.2	+	4	702	c.533G>A	c.(532-534)GGA>GAA	p.G178E	GLDN_uc010bez.1_Missense_Mutation_p.E161K|GLDN_uc002abb.2_Missense_Mutation_p.G54E	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	178	Extracellular (Potential).|Collagen-like 1.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		GGAAAAAGAGGAAAAATGGGT	0.483000													13	27					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	15	84909434	84909434	+	RNA	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr15:84909434G>A	uc010bmy.1	+	1		c.61G>A								Homo sapiens golgi autoantigen, golgin subfamily a, 9 pseudogene, mRNA (cDNA clone IMAGE:40024530).																		GAGAGGCTGCGGGAGCTGGAG	0.667000													3	11					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	16	66940	66940	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr16:66940G>A	uc002cfg.1	-	5	1355	c.696C>T	c.(694-696)AGC>AGT	p.S232S		NM_182905	NP_878908			WAS protein family homolog 1																		GCTCTCTCTTGCTGATGGACA	0.597000													8	39					0	0	0.002450	0	0
GRIN2A	2903	broad.mit.edu	37	16	9923387	9923387	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr16:9923387A>T	uc002czo.3	-	9	2448	c.1900T>A	c.(1900-1902)TGG>AGG	p.W634R	GRIN2A_uc010uym.1_Missense_Mutation_p.W634R|GRIN2A_uc010uyn.1_Missense_Mutation_p.W477R|GRIN2A_uc002czr.3_Missense_Mutation_p.W634R	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	634	Helical; (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AAGAAGGCCCATACAGATACC	0.493000													34	36					0	0	0.010818	0	0
PELP1	27043	broad.mit.edu	37	17	4575136	4575136	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr17:4575136G>A	uc002fyi.3	-	16	3376	c.3150C>T	c.(3148-3150)CCC>CCT	p.P1050P	PELP1_uc010vsf.1_Silent_p.P826P	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	1050	Glu-rich.|Pro-rich.				transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						CAAGCTCCTGGGGAGGGGGCC	0.657000													15	33					0	0	0.004007	0	0
ACAP1	9744	broad.mit.edu	37	17	7251257	7251257	+	Missense_Mutation	SNP	T	C	C	rs143351258		TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr17:7251257T>C	uc002ggd.2	+	15	1566	c.1360T>C	c.(1360-1362)TTC>CTC	p.F454L		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	454	Arf-GAP.|Required for interaction with GULP1.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						TGGTGTTCACTTCTCCAAAGT	0.597000													11	64					0	0	0.013537	0	0
MYO15A	51168	broad.mit.edu	37	17	18022636	18022636	+	Silent	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr17:18022636C>T	uc010vxh.1	+	2	860	c.522C>T	c.(520-522)TTC>TTT	p.F174F		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	174	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AACTCCCCTTCCCGTCGGGTG	0.711000													24	27					0	0	0.004656	0	0
ATAD5	79915	broad.mit.edu	37	17	29220572	29220572	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr17:29220572G>A	uc002hfs.1	+	21	5047	c.4701G>A	c.(4699-4701)AAG>AAA	p.K1567K		NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	1567					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				AGAAACAAAAGAAAACATTGG	0.373000													14	29					0	0	0.002450	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	T	T	rs76270529	by1000genomes	TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr17:39254054A>T	uc010wfo.1	-	1	322	c.283T>A	c.(283-285)TGC>AGC	p.C95S		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	95	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|15.					keratin filament					0						ctggagatgcagcagcTAGGG	0.318000													5	26					0	0	0.000602	0	0
LLGL2	3993	broad.mit.edu	37	17	73567827	73567827	+	Silent	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr17:73567827C>T	uc002joh.2	+	18	2410	c.2256C>T	c.(2254-2256)GCC>GCT	p.A752A	LLGL2_uc002joi.2_Silent_p.A752A|LLGL2_uc010dgg.1_Silent_p.A752A|LLGL2_uc002joj.2_Silent_p.A741A|LLGL2_uc010wsd.1_Silent_p.A379A	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	752	WD 11.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			TGCCTCCCGCCGAGCGGAGAA	0.682000													26	8					0	0	0.005443	0	0
BAHCC1	57597	broad.mit.edu	37	17	79409801	79409801	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr17:79409801C>T	uc002kaf.2	+	3	1426	c.1426C>T	c.(1426-1428)CCC>TCC	p.P476S	BAHCC1_uc002kae.2_5'Flank	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	476							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CAGCGCAGGCCCCGAGGCCTC	0.667000													9	8					0	0	0.006214	0	0
MBD3	53615	broad.mit.edu	37	19	1578395	1578395	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr19:1578395C>G	uc002ltl.1	-	6	842	c.820G>C	c.(820-822)GAC>CAC	p.D274H	uc002lti.1_5'Flank|MBD3_uc002ltj.2_Missense_Mutation_p.D274H|MBD3_uc002ltk.2_Missense_Mutation_p.D242H	NM_003926	NP_003917	O95983	MBD3_HUMAN	methyl-CpG binding domain protein 3	274	Poly-Glu.				transcription, DNA-dependent	NuRD complex	DNA binding|protein binding			ovary(1)|pancreas(1)|skin(1)	3		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.179)|STAD - Stomach adenocarcinoma(1328;0.18)		tcctcctcgtcttcctcgtcg	0.582000													21	25					0	0	0.008871	0	0
TCF3	6929	broad.mit.edu	37	19	1632113	1632113	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr19:1632113G>A	uc002ltr.2	-	5	289	c.222C>T	c.(220-222)ACC>ACT	p.T74T	TCF3_uc002ltt.3_Silent_p.T74T|TCF3_uc002ltq.2_Intron|TCF3_uc002lts.1_5'Flank	NM_003200	NP_003191	P15923	TFE2_HUMAN	transcription factor 3 isoform E12	74				FDPSRTFSEGTHFTESHSSLSSSTFLGPGLG -> GGGECL AWCGPSAVHRCADVGLGMVSARTAP (in Ref. 6; CAA36297).	B cell lineage commitment|B cell lineage commitment|G1 phase of mitotic cell cycle|immunoglobulin V(D)J recombination|muscle cell differentiation|positive regulation of B cell proliferation|positive regulation of cell cycle|positive regulation of muscle cell differentiation|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus|protein complex|transcription factor complex	bHLH transcription factor binding|DNA binding|E-box binding|identical protein binding|mitogen-activated protein kinase kinase kinase binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|vitamin D response element binding			lung(2)|breast(2)|ovary(1)|large_intestine(1)|skin(1)	7		Acute lymphoblastic leukemia(61;5.94e-12)|all_hematologic(61;1.27e-07)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTCGCTGAAGGTCTAGGGGA	0.637000			T	PBX1|HLF|TFPT	pre B-ALL								6	16					0	0	0.003080	0	0
DNMT1	1786	broad.mit.edu	37	19	10246815	10246815	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr19:10246815G>A	uc002mng.2	-	37	4770	c.4590C>T	c.(4588-4590)CCC>CCT	p.P1530P	DNMT1_uc002mne.2_RNA|DNMT1_uc002mnf.2_Silent_p.P454P|DNMT1_uc010xlc.1_Silent_p.P1546P|DNMT1_uc002mnh.2_Silent_p.P1425P|DNMT1_uc010xld.1_Silent_p.P1533P	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	1530	Catalytic.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding	p.P1530L(1)		ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	CCATGGGCTCGGGGTTGGTGA	0.647000													27	32					0	0	0.008361	0	0
ZNF536	9745	broad.mit.edu	37	19	30936347	30936347	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr19:30936347G>A	uc002nsu.1	+	2	2016	c.1878G>A	c.(1876-1878)ATG>ATA	p.M626I	ZNF536_uc010edd.1_Missense_Mutation_p.M626I	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	626					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CTGGGAACATGAAGGAGAAGC	0.597000													58	102					0	0	0.014410	0	0
C19orf41	126123	broad.mit.edu	37	19	50657868	50657868	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr19:50657868G>A	uc002prp.1	-	6	699	c.612C>T	c.(610-612)GTC>GTT	p.V204V		NM_152358	NP_689571	Q6UXV1	IZUM2_HUMAN	hypothetical protein LOC126123 precursor	204	Helical; (Potential).					integral to membrane					0		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00364)|OV - Ovarian serous cystadenocarcinoma(262;0.0052)		AGACCACGATGACCACGAAGA	0.587000													30	41					0	0	0.007291	0	0
FOXN2	3344	broad.mit.edu	37	2	48586205	48586205	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr2:48586205T>C	uc002rwh.1	+	4	872	c.557T>C	c.(556-558)TTA>TCA	p.L186S		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	186	Fork-head.				embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			AAAGGTTCCTTATGGTGTGTT	0.343000													13	19					0	0	0.003163	0	0
IL1R1	3554	broad.mit.edu	37	2	102785060	102785060	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr2:102785060G>A	uc002tbq.2	+	7	976	c.658G>A	c.(658-660)GAA>AAA	p.E220K	IL1R1_uc010fix.2_Missense_Mutation_p.E220K|IL1R1_uc002tbp.2_Missense_Mutation_p.E220K|IL1R1_uc002tbr.2_Missense_Mutation_p.E220K	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	220	Extracellular (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	TCTTTCAGAGGAAAACAAACC	0.428000													40	70					0	0	0.011902	0	0
RGPD4	285190	broad.mit.edu	37	2	108477279	108477279	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr2:108477279T>A	uc010ywk.1	+	13	1898	c.1816T>A	c.(1816-1818)TAT>AAT	p.Y606N	RGPD4_uc002tdu.2_5'UTR|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	606	TPR 2.				intracellular transport		binding			skin(2)	2						AAGTGTTCATTATTGGAAGAA	0.323000													58	81					0	0	0.014410	0	0
ECEL1	9427	broad.mit.edu	37	2	233344912	233344912	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr2:233344912C>A	uc002vsv.2	-	18	2484	c.2279G>T	c.(2278-2280)TGT>TTT	p.C760F	ECEL1_uc010fya.1_Missense_Mutation_p.C758F|ECEL1_uc010fyb.1_Missense_Mutation_p.C467F	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	760	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GTCCTTGGGACAGTGGAAAGC	0.652000													12	31					0.000151284	0.000444591	0.001855	1	0
NGEF	25791	broad.mit.edu	37	2	233834931	233834931	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr2:233834931C>T	uc002vts.2	-	3	624	c.376G>A	c.(376-378)GAA>AAA	p.E126K		NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	126	Regulatory region; modulates activity toward RHOA, RAC1 and CDC42 (By similarity).				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		TACCTCATTTCCTGGGCTCCT	0.498000													28	37					0	0	0.006320	0	0
ZNF334	55713	broad.mit.edu	37	20	45130161	45130161	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr20:45130161C>A	uc002xsc.2	-	5	2001	c.1817G>T	c.(1816-1818)GGG>GTG	p.G606V	ZNF334_uc002xsa.2_Missense_Mutation_p.G629V|ZNF334_uc002xsb.2_Missense_Mutation_p.G568V|ZNF334_uc002xsd.2_Missense_Mutation_p.G568V|ZNF334_uc010ghl.2_Missense_Mutation_p.G605V	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	606	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				GAAGGATTTCCCACATTCATT	0.423000													37	211					6.29468e-14	1.86894e-13	0.004878	1	0
SALL4	57167	broad.mit.edu	37	20	50400980	50400980	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr20:50400980G>A	uc002xwh.3	-	4	3087	c.2986C>T	c.(2986-2988)CCT>TCT	p.P996S	SALL4_uc010gii.2_Missense_Mutation_p.P559S|SALL4_uc002xwi.3_Missense_Mutation_p.P219S	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	996					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGGAGGGTAGGAACCCCCCCA	0.557000													28	71					0	0	0.007291	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871926	51871926	+	Silent	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr20:51871926C>T	uc002xwo.2	+	2	2885	c.1929C>T	c.(1927-1929)GCC>GCT	p.A643A		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	643					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CTCCAGAAGCCAAAAAGACCG	0.557000													64	44					0	0	0.014410	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657077	46657077	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr22:46657077A>T	uc003bhh.2	-	1	2143	c.2143T>A	c.(2143-2145)TCC>ACC	p.S715T		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	715	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TTCAAAACGGAAGCTACTATA	0.398000													22	53					0	0	0.012319	0	0
NKTR	4820	broad.mit.edu	37	3	42679557	42679557	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr3:42679557A>C	uc003clo.2	+	13	2508	c.2361A>C	c.(2359-2361)AAA>AAC	p.K787N	NKTR_uc003clm.1_Missense_Mutation_p.K534N|NKTR_uc003clp.2_Missense_Mutation_p.K534N|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Missense_Mutation_p.K677N|NKTR_uc003clr.1_Missense_Mutation_p.K534N|NKTR_uc003cls.2_Missense_Mutation_p.K487N	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	787	Arg/Ser-rich.				protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		AATATGTCAAAGGTAGAGACA	0.408000													41	49					0	0	0.008740	0	0
LOC220729	220729	broad.mit.edu	37	3	197348739	197348739	+	RNA	SNP	G	C	C			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr3:197348739G>C	uc011bug.1	-	4		c.352C>G			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						TAATTTTCTAGCTGTGAAAGA	0.398000													4	73					0	0	0.003080	0	0
KCNIP4	80333	broad.mit.edu	37	4	20734378	20734378	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr4:20734378C>T	uc003gqe.2	-	6	601	c.517G>A	c.(517-519)GAT>AAT	p.D173N	KCNIP4_uc003gqf.1_Missense_Mutation_p.D169N|KCNIP4_uc003gqg.1_Missense_Mutation_p.D128N|KCNIP4_uc003gqh.1_Missense_Mutation_p.D165N|KCNIP4_uc003gqi.1_Missense_Mutation_p.D128N|PACRGL_uc003gpu.2_Intron|PACRGL_uc003gpx.3_Intron|PACRGL_uc003gpw.2_Intron|KCNIP4_uc010iel.2_Missense_Mutation_p.D170N|KCNIP4_uc003gqd.3_Missense_Mutation_p.D153N	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	190	EF-hand 3.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				CCCATCATATCGTATATTGCT	0.378000													22	29					0	0	0.014323	0	0
PROL1	58503	broad.mit.edu	37	4	71275127	71275127	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr4:71275127C>G	uc003hfi.2	+	3	256	c.82C>G	c.(82-84)CCA>GCA	p.P28A		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	28	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				CTCCAGAAGACCATATCTACC	0.428000													31	12					0	0	0.008361	0	0
BMP2K	55589	broad.mit.edu	37	4	79793862	79793862	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr4:79793862C>T	uc003hlk.2	+	13	1869	c.1703C>T	c.(1702-1704)CCT>CTT	p.P568L	BMP2K_uc003hlj.2_Missense_Mutation_p.P568L|BMP2K_uc003hll.2_Missense_Mutation_p.P32L	NM_198892	NP_942595	Q9NSY1	BMP2K_HUMAN	BMP-2 inducible kinase isoform a	568						nucleus	ATP binding|protein serine/threonine kinase activity			lung(1)	1						CTTACCTCCCCTCAAGAGTTC	0.463000													29	9					0	0	0.005443	0	0
MEPE	56955	broad.mit.edu	37	4	88767038	88767038	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr4:88767038G>A	uc003hqy.2	+	4	1057	c.1018G>A	c.(1018-1020)GAT>AAT	p.D340N	MEPE_uc010ikn.2_Missense_Mutation_p.D227N	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	340					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		GGGCAGCAACGATATCATGGG	0.473000													42	8					0	0	0.008740	0	0
NEIL3	55247	broad.mit.edu	37	4	178281684	178281684	+	Silent	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr4:178281684C>T	uc003iut.2	+	9	1605	c.1488C>T	c.(1486-1488)GGC>GGT	p.G496G		NM_018248	NP_060718	Q8TAT5	NEIL3_HUMAN	nei endonuclease VIII-like 3	496					base-excision repair|nucleotide-excision repair	nucleus	bubble DNA binding|damaged DNA binding|DNA N-glycosylase activity|DNA-(apurinic or apyrimidinic site) lyase activity|double-stranded DNA binding|single-stranded DNA binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4		Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.164)		all cancers(43;1.96e-23)|Epithelial(43;2.52e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.89e-11)|GBM - Glioblastoma multiforme(59;9.49e-05)|Colorectal(24;0.00013)|COAD - Colon adenocarcinoma(29;0.000696)|STAD - Stomach adenocarcinoma(60;0.00308)|LUSC - Lung squamous cell carcinoma(193;0.0398)|READ - Rectum adenocarcinoma(43;0.191)		TGACAGATGGCCCTCGTACCT	0.478000								BER_DNA_glycosylases					21	8					0	0	0.003954	0	0
C4orf41	60684	broad.mit.edu	37	4	184607856	184607856	+	Silent	SNP	A	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr4:184607856A>T	uc003ivx.2	+	18	2024	c.1848A>T	c.(1846-1848)CCA>CCT	p.P616P	C4orf41_uc003ivw.2_Silent_p.P616P|C4orf41_uc010isc.2_Intron|C4orf41_uc003ivy.2_Silent_p.P222P	NM_021942	NP_068761	Q7Z392	CD041_HUMAN	hypothetical protein LOC60684 isoform a	616											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.39e-26)|Epithelial(43;2.42e-22)|OV - Ovarian serous cystadenocarcinoma(60;6.85e-10)|GBM - Glioblastoma multiforme(59;6.71e-06)|Colorectal(24;9.67e-06)|STAD - Stomach adenocarcinoma(60;2.36e-05)|COAD - Colon adenocarcinoma(29;7.07e-05)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.171)		CTGATTGTCCACATCCCATTA	0.368000													84	184					0	0	0.014410	0	0
CTNND2	1501	broad.mit.edu	37	5	10992701	10992701	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr5:10992701G>A	uc003jfa.1	-	19	3318	c.3173C>T	c.(3172-3174)TCC>TTC	p.S1058F	CTNND2_uc010itt.2_Missense_Mutation_p.S967F|CTNND2_uc011cmy.1_Missense_Mutation_p.S721F|CTNND2_uc011cmz.1_Missense_Mutation_p.S625F|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.S650F	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1058					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGGGGAGATGGAGGGCGTGCG	0.572000													36	43					0	0	0.007835	0	0
CDH6	1004	broad.mit.edu	37	5	31317540	31317540	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr5:31317540C>T	uc003jhe.1	+	10	1897	c.1571C>T	c.(1570-1572)TCG>TTG	p.S524L	CDH6_uc003jhd.1_Missense_Mutation_p.S524L	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	524	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CACCAATTTTCGTTTTCCTTG	0.403000													43	14					0	0	0.013114	0	0
PDZD2	23037	broad.mit.edu	37	5	32058048	32058048	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr5:32058048C>T	uc003jhl.2	+	12	2427	c.2039C>T	c.(2038-2040)CCC>CTC	p.P680L	PDZD2_uc003jhm.2_Missense_Mutation_p.P680L|PDZD2_uc011cnx.1_Missense_Mutation_p.P506L	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	680					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						AGCCTCACACCCTGCTCGACA	0.532000											OREG0016543	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	9					0	0	0.003163	0	0
RARS	5917	broad.mit.edu	37	5	167915736	167915736	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr5:167915736C>T	uc003lzx.2	+	2	216	c.175C>T	c.(175-177)CGA>TGA	p.R59*	RARS_uc011deo.1_5'UTR	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	59	Could be involved in the assembly of the multisynthetase complex.				arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		GAATATTCTTCGAAAGGTGAG	0.338000													20	30					0	0	0.012319	0	0
VARS	7407	broad.mit.edu	37	6	31759398	31759399	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr6:31759398_31759399GG>AA	uc003nxe.2	-	8	1511_1512	c.1088_1089CC>TT	c.(1087-1089)TCC>TTT	p.S363F	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	363					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	ATCGAGTCAGGGAGTCCTGGAT	0.594000													97	180					0	0	0.004672	0	0
LGSN	51557	broad.mit.edu	37	6	63990777	63990777	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr6:63990777G>A	uc003peh.2	-	4	713	c.679C>T	c.(679-681)CCT>TCT	p.P227S	LGSN_uc003pei.2_Intron	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	227					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	GTTAAAGCAGGAAAAGATATA	0.398000													16	29					0	0	0.004007	0	0
COL12A1	1303	broad.mit.edu	37	6	75904554	75904554	+	Silent	SNP	A	G	G			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr6:75904554A>G	uc003phs.2	-	3	349	c.183T>C	c.(181-183)CCT>CCC	p.P61P	COL12A1_uc003pht.2_Intron	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	61	Fibronectin type-III 1.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TACCCGTTGTAGGGTCCACCG	0.393000													3	98					0	0	0.004672	0	0
SLC35D3	340146	broad.mit.edu	37	6	137245645	137245645	+	Silent	SNP	C	G	G			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr6:137245645C>G	uc003qhe.2	+	2	1227	c.1062C>G	c.(1060-1062)GGC>GGG	p.G354G		NM_001008783	NP_001008783	Q5M8T2	S35D3_HUMAN	solute carrier family 35, member D3	354					carbohydrate transport	integral to membrane				ovary(1)|central_nervous_system(1)	2	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000136)|OV - Ovarian serous cystadenocarcinoma(155;0.00365)		CAGCAGGTGGCCCCGCTCAGG	0.652000													15	16					0	0	0.003163	0	0
HIVEP2	3097	broad.mit.edu	37	6	143093699	143093699	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr6:143093699G>A	uc003qjd.2	-	5	2920	c.2177C>T	c.(2176-2178)TCC>TTC	p.S726F		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	726					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		GTCATAATCGGAAGCCATGAT	0.522000													37	37					0	0	0.005524	0	0
C6orf97	80129	broad.mit.edu	37	6	151939193	151939193	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr6:151939193C>T	uc003qol.2	+	11	2148	c.2059C>T	c.(2059-2061)CAG>TAG	p.Q687*		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	687											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		CCATTCACATCAGCATCACTT	0.473000													43	54					0	0	0.009718	0	0
HOXA11	3207	broad.mit.edu	37	7	27222434	27222434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr7:27222434G>A	uc003syx.2	-	2	995	c.923C>T	c.(922-924)TCA>TTA	p.S308L	HOXA10_uc003syw.3_5'Flank|HOXA11_uc003syy.2_RNA|HOXA11AS_uc003syz.1_5'Flank	NM_005523	NP_005514	P31270	HXA11_HUMAN	homeobox A11	308					branching involved in ureteric bud morphogenesis|cartilage development involved in endochondral bone morphogenesis|developmental growth|dorsal/ventral pattern formation|mesodermal cell fate specification|positive regulation of cell development|positive regulation of chondrocyte differentiation	protein-DNA complex|transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)	2						TGGATTTGCTGAGTAGTACTG	0.443000			T	NUP98	CML								27	49					0	0	0.008361	0	0
NPSR1	387129	broad.mit.edu	37	7	34698172	34698172	+	Splice_Site	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr7:34698172G>A	uc003teg.1	+	1	275	c.147_splice	c.e1+1	p.K49_splice	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Splice_Site_p.K49_splice|NPSR1_uc010kwt.1_Splice_Site|NPSR1_uc010kwu.1_Splice_Site|NPSR1_uc010kwv.1_Splice_Site_p.K49_splice|NPSR1_uc003tei.1_Splice_Site_p.K49_splice|NPSR1_uc010kww.1_Splice_Site_p.K49_splice|NPSR1_uc011kar.1_Splice_Site_p.K49_splice	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma							cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CTCCTTTAAGGTAAGTTTCTT	0.438000													29	32					0	0	0.006320	0	0
DTX2	113878	broad.mit.edu	37	7	76112398	76112398	+	Missense_Mutation	SNP	G	A	A	rs142155908	byFrequency	TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr7:76112398G>A	uc003uff.3	+	5	1398	c.842G>A	c.(841-843)CGC>CAC	p.R281H	DTX2_uc011kgk.1_Missense_Mutation_p.R190H|DTX2_uc003ufg.3_Missense_Mutation_p.R281H|DTX2_uc003ufh.3_Missense_Mutation_p.R281H|DTX2_uc003ufj.3_Missense_Mutation_p.R281H	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	281					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CCCCTCTACCGCTCCAGCCTC	0.682000													8	64					0	0	0.002450	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519545	113519545	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr7:113519545G>A	uc010ljy.1	-	4	1633	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	534					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						AGATTGTTTGGAAATTTTTTC	0.373000													21	24					0	0	0.008871	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141130	143141130	+	Silent	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr7:143141130C>T	uc011ktg.1	+	1	585	c.585C>T	c.(583-585)TTC>TTT	p.F195F	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	195	Helical; Name=5; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TCTATCTCTTCCCTCTAAAAA	0.423000													67	97					0	0	0.014410	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141184	143141184	+	Missense_Mutation	SNP	G	A	A	rs141559059		TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr7:143141184G>A	uc011ktg.1	+	1	639	c.639G>A	c.(637-639)ATG>ATA	p.M213I	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	213	Cytoplasmic (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity	p.M213I(2)		skin(6)	6	Melanoma(164;0.172)					TCATTTGCATGATTTTGCTCA	0.463000													41	74					0	0	0.010771	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389632	150389632	+	Silent	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr7:150389632C>T	uc003who.2	+	3	346	c.258C>T	c.(256-258)GAC>GAT	p.D86D	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	86						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTTGGAAGGAccactgtgaag	0.388000													20	21					0	0	0.007413	0	0
CSMD1	64478	broad.mit.edu	37	8	3216834	3216834	+	Silent	SNP	A	C	C			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr8:3216834A>C	uc011kwk.1	-	21	3537	c.3147T>G	c.(3145-3147)CCT>CCG	p.P1049P	CSMD1_uc011kwj.1_Silent_p.P441P|CSMD1_uc003wqe.2_Silent_p.P205P	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1049	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGGGACTCCAGGATCATCAC	0.448000													3	52					0	0	0.000602	0	0
SGCZ	137868	broad.mit.edu	37	8	14412245	14412245	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr8:14412245G>A	uc003wwq.2	-	2	890	c.230C>T	c.(229-231)ACT>ATT	p.T77I	SGCZ_uc010lss.2_Missense_Mutation_p.T64I	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	64	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		ACTTACCACAGTGAAATTCAT	0.328000													16	22					0	0	0.004007	0	0
STC1	6781	broad.mit.edu	37	8	23709033	23709033	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr8:23709033G>A	uc003xdw.1	-	3	557	c.273C>T	c.(271-273)TTC>TTT	p.F91F		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	91					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		TCTCTTTGACGAATGCTTTTC	0.507000													15	23					0	0	0.002450	0	0
PREX2	80243	broad.mit.edu	37	8	68972998	68972998	+	Silent	SNP	T	C	C			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr8:68972998T>C	uc003xxv.1	+	11	1350	c.1323T>C	c.(1321-1323)AAT>AAC	p.N441N	PREX2_uc003xxu.1_Silent_p.N441N|PREX2_uc011lez.1_Silent_p.N376N	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	441	DEP 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TATTAGAAAATGGAATCATTC	0.348000													13	67					0	0	0.013537	0	0
DMRT2	10655	broad.mit.edu	37	9	1056913	1056913	+	Silent	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr9:1056913G>A	uc003zha.2	+	4	1526	c.1326G>A	c.(1324-1326)ACG>ACA	p.T442T	DMRT2_uc003zgx.3_Silent_p.T209T|DMRT2_uc010mgz.2_Silent_p.T209T|DMRT2_uc003zgy.3_Silent_p.T286T|DMRT2_uc003zhb.3_3'UTR|DMRT2_uc011llt.1_3'UTR|DMRT2_uc011llu.1_3'UTR|DMRT2_uc011llv.1_Silent_p.T442T	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	442					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		TTGTTGACACGGACTCCCTGG	0.527000													80	15					0	0	0.014410	0	0
PTPRD	5789	broad.mit.edu	37	9	8486101	8486101	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr9:8486101C>T	uc003zkk.2	-	27	3427	c.2716G>A	c.(2716-2718)GAG>AAG	p.E906K	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.E897K|PTPRD_uc003zkm.2_Missense_Mutation_p.E893K|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	906	Fibronectin type-III 6.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TTCACCATCTCCTCCCCAAAG	0.468000										TSP Lung(15;0.13)			23	6					0	0	0.002780	0	0
FREM1	158326	broad.mit.edu	37	9	14841567	14841567	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr9:14841567G>A	uc003zlm.2	-	10	2349	c.1759C>T	c.(1759-1761)CTT>TTT	p.L587F	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	587	CSPG 3.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCCCTCTGAAGGAAGCCATGG	0.383000													60	21					0	0	0.014410	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971208	21971208	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr9:21971208C>T	uc003zpk.2	-	2	363	c.151_splice	c.e2-1	p.V51_splice	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Splice_Site|CDKN2A_uc010miu.2_Splice_Site|CDKN2A_uc003zpl.2_Splice_Site_p.G106_splice	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1						cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(28)|p.V28_V51del(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		TCATCATGACCTGCCAGAGAG	0.667000		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			24	19					0	0	0.003954	0	0
FAM75A3	727830	broad.mit.edu	37	9	40702792	40702793	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr9:40702792_40702793CC>TT	uc010mmj.2	+	4	478_479	c.449_450CC>TT	c.(448-450)TCC>TTT	p.S150F		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	150	Pro-rich.					integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CCCATTCTCTCCCTGTTAGCTT	0.599000													100	356					0	0	0.004672	0	0
IL9R	3581	broad.mit.edu	37	X	155233493	155233493	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chrX:155233493G>A	uc004fnv.1	+	4	585	c.406G>A	c.(406-408)GAC>AAC	p.D136N	IL9R_uc010nvn.2_Missense_Mutation_p.D115N|IL9R_uc004fnu.1_Nonsense_Mutation_p.W180*	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	136	Extracellular (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAGCCTGGTGGACCCGGAGTA	0.622000													25	61					0	0	0.009535	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	GGGGCGCAGCAGCTG	GGGGCGCAGCAGCTG			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr21:46012219_46012220insGGGGCGCAGCAGCTG	uc002zfm.2	-	1	167_168	c.146_147insCAGCTGCTGCGCCCC	c.(145-147)CCG>CCCAGCTGCTGCGCCCCG	p.49_49P>PSCCAP	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	49	2.|29 X 5 AA repeats of C-C-X(3).					keratin filament					0						GGCAGGGGGCCGGGGCGCAGCA	0.688													9	51	---	---	---	---					
ATAD2	29028	broad.mit.edu	37	8	124384892	124384893	+	Frame_Shift_Ins	INS	-	T	T			TCGA-ER-A19L-06A-12D-A197-08	TCGA-ER-A19L-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d5ffe62-6dd9-4764-b0b7-5e3010eefe6d	338df758-f109-4331-8d51-b3ee0eab4229	g.chr8:124384892_124384893insT	uc003yqh.3	-	3	462_463	c.354_355insA	c.(352-357)AAAGAAfs	p.K118fs	ATAD2_uc011lii.1_5'UTR|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Frame_Shift_Ins_p.K118fs	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	118_119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CTGTGCTCTTCTTTTTTTTTAT	0.198													7	216	---	---	---	---					
