Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PADI3	51702	broad.mit.edu	37	1	17607261	17607261	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:17607261G>A	uc001bai.2	+	15	1771	c.1731G>A	c.(1729-1731)AGG>AGA	p.R577R		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	577					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	AGACCGAGAGGAAAAAAGCAA	0.542													23	55					0	0	0.002299	0	0
TAS1R2	80834	broad.mit.edu	37	1	19166648	19166648	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:19166648G>A	uc001bba.1	-	6	1966	c.1965C>T	c.(1963-1965)ATC>ATT	p.I655I		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	655	Helical; Name=3; (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	AGGCGCAGACGATCTGGAAAG	0.607													54	101					0	0	0.003610	0	0
CSMD2	114784	broad.mit.edu	37	1	33985537	33985537	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:33985537C>T	uc001bxn.1	-	68	10208	c.10179G>A	c.(10177-10179)CTG>CTA	p.L3393L	CSMD2_uc001bxm.1_Silent_p.L3537L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3393	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGTCTGACTCCAGCAGCCTGA	0.567													7	26					0	0	0.001984	0	0
MEAF6	64769	broad.mit.edu	37	1	37979120	37979120	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:37979120T>C	uc001cbg.1	-	2	127	c.110A>G	c.(109-111)GAG>GGG	p.E37G	MEAF6_uc001cbd.1_Missense_Mutation_p.E15G|MEAF6_uc001cbe.1_Missense_Mutation_p.E37G|MEAF6_uc009vvd.1_RNA|MEAF6_uc001cbf.1_RNA|MEAF6_uc001cbh.1_Missense_Mutation_p.E37G	NM_022756	NP_073593	Q9HAF1	EAF6_HUMAN	MYST/Esa1-associated factor 6	37	Potential.				histone H2A acetylation|histone H3-K14 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|NuA4 histone acetyltransferase complex|nucleolus	protein binding				0						GATCTGTCGCTCCAAATTTGC	0.398													3	119					0	0	0.004672	0	0
EPHA10	284656	broad.mit.edu	37	1	38197177	38197177	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:38197177G>A	uc009vvi.2	-	7	1655	c.1569C>T	c.(1567-1569)ACC>ACT	p.T523T	EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	523	Fibronectin type-III 2.|Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AGACGTAGCGGGTAGCCGGCT	0.587													48	88					0	0	0.003610	0	0
EBNA1BP2	10969	broad.mit.edu	37	1	43630333	43630334	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:43630333_43630334GG>AA	uc001cin.2	-	8	1047_1048	c.850_851CC>TT	c.(850-852)CCT>TTT	p.P284F	EBNA1BP2_uc001cio.2_Missense_Mutation_p.P339F|EBNA1BP2_uc001cim.2_Missense_Mutation_p.P179F|EBNA1BP2_uc010ojx.1_Missense_Mutation_p.P339F	NM_006824	NP_006815	Q99848	EBP2_HUMAN	EBNA1 binding protein 2 isoform 2	284					ribosome biogenesis	membrane fraction|nucleolus	protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTTCTTGCCAGGCCTCTTGAGG	0.569													26	58					0	0	0.004672	0	0
KIF2C	11004	broad.mit.edu	37	1	45226095	45226095	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:45226095G>A	uc001cmg.3	+	15	1626	c.1511G>A	c.(1510-1512)AGT>AAT	p.S504N	KIF2C_uc010olb.1_Missense_Mutation_p.S463N|KIF2C_uc010olc.1_Missense_Mutation_p.S391N|KIF2C_uc001cmh.3_Missense_Mutation_p.S450N	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	504	Kinesin-motor.				blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GACACTTCCAGTGCTGACCGG	0.557													11	24					0	0	0.000978	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47571801	47571801	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:47571801G>A	uc001cqu.1	+	9	1072	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	357	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						TCTACCCAGGGAACACCTGAG	0.483													29	63					0	0	0.003271	0	0
YIPF1	54432	broad.mit.edu	37	1	54344370	54344370	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:54344370G>A	uc001cvu.2	-	5	558	c.221C>T	c.(220-222)TCC>TTC	p.S74F	YIPF1_uc001cvv.2_RNA|YIPF1_uc001cvw.2_RNA|YIPF1_uc001cvx.2_RNA|YIPF1_uc001cvy.2_RNA	NM_018982	NP_061855	Q9Y548	YIPF1_HUMAN	Yip1 domain family, member 1	74	Cytoplasmic (Potential).					integral to membrane|transport vesicle				large_intestine(1)|ovary(1)	2						CCAGAAGGGGGAGCTTTTCTT	0.408													15	40					0	0	0.003163	0	0
FAM151A	338094	broad.mit.edu	37	1	55078336	55078336	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:55078336G>A	uc001cxn.2	-	5	755	c.623C>T	c.(622-624)CCA>CTA	p.P208L	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	208						integral to membrane					0						GGTCCAGCCTGGAGATAGGGT	0.582													33	55					0	0	0.004878	0	0
CYP2J2	1573	broad.mit.edu	37	1	60370618	60370618	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:60370618C>T	uc001czq.2	-	7	1121	c.1116G>A	c.(1114-1116)ATG>ATA	p.M372I		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	372					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					TGATGTTGCCCATTCTCTGCA	0.557													25	62					0	0	0.003330	0	0
SGIP1	84251	broad.mit.edu	37	1	67148038	67148038	+	Missense_Mutation	SNP	C	T	T	rs139418191		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:67148038C>T	uc001dcr.2	+	15	1518	c.1301C>T	c.(1300-1302)CCG>CTG	p.P434L	SGIP1_uc010opd.1_Intron|SGIP1_uc001dcs.2_Intron|SGIP1_uc001dct.2_Intron|SGIP1_uc009wat.2_Missense_Mutation_p.P201L	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	434	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						GGCCCTGGTCCGGGGACCACC	0.597													71	137					0	0	0.003610	0	0
C1orf141	400757	broad.mit.edu	37	1	67581048	67581048	+	Silent	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:67581048T>C	uc001ddl.1	-	4	444	c.333A>G	c.(331-333)GAA>GAG	p.E111E	C1orf141_uc001ddm.1_Silent_p.E111E|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	111										ovary(1)	1						TTGACTCACTTTCTTTATTTT	0.289													4	10					0	0	0.001168	0	0
PTGER3	5733	broad.mit.edu	37	1	71478162	71478162	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:71478162C>T	uc001dfg.1	-	2	1134	c.903G>A	c.(901-903)ATG>ATA	p.M301I	PTGER3_uc001dfh.1_RNA|PTGER3_uc001dfi.1_RNA|PTGER3_uc001dfj.1_RNA|PTGER3_uc001dfk.1_Missense_Mutation_p.M301I|PTGER3_uc001dfl.1_Missense_Mutation_p.M301I|PTGER3_uc009wbm.1_Missense_Mutation_p.M301I|PTGER3_uc001dfm.1_RNA|PTGER3_uc001dfn.2_Missense_Mutation_p.M301I|PTGER3_uc009wbn.1_Missense_Mutation_p.M301I|PTGER3_uc009wbo.2_Missense_Mutation_p.M301I|PTGER3_uc001dfo.2_Missense_Mutation_p.M301I|PTGER3_uc001dfp.1_Missense_Mutation_p.M301I|PTGER3_uc001dfq.2_Missense_Mutation_p.M301I	NM_198714	NP_942007	P43115	PE2R3_HUMAN	prostaglandin E receptor 3, subtype EP3 isoform	301	Helical; Name=6; (Potential).				cell death|positive regulation of fever generation|transcription, DNA-dependent	integral to plasma membrane|nuclear envelope	ligand-dependent nuclear receptor activity|prostaglandin E receptor activity			pancreas(1)|lung(1)|skin(1)	3					Bimatoprost(DB00905)	TTTTCAACATCATTATCTAAG	0.274													10	23					0	0	0.000673	0	0
PTGFR	5737	broad.mit.edu	37	1	79002162	79002162	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:79002162C>T	uc001din.2	+	3	1136	c.870C>T	c.(868-870)CTC>CTT	p.L290L	PTGFR_uc001dim.2_3'UTR	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	290	Helical; Name=7; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	TTTTTGCTCTCCGAATGGCAA	0.383													30	61					0	0	0.001512	0	0
GBP2	2634	broad.mit.edu	37	1	89582786	89582786	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:89582786C>T	uc001dmz.1	-	6	1028	c.757G>A	c.(757-759)GAG>AAG	p.E253K	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	253					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		AGCTCTTCCTCCTTTAGCTGC	0.478													19	41					0	0	0.001216	0	0
DPYD	1806	broad.mit.edu	37	1	98187201	98187201	+	Silent	SNP	T	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:98187201T>G	uc001drv.2	-	5	485	c.348A>C	c.(346-348)ATA>ATC	p.I116I	DPYD_uc010oub.1_RNA|DPYD_uc001drw.2_Silent_p.I116I	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	116					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TGTCAGAAAATATCATCTTAG	0.343													36	35					0	0	0.004878	0	0
TMEM167B	56900	broad.mit.edu	37	1	109635608	109635608	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:109635608C>T	uc001dwn.2	+	2	199	c.107C>T	c.(106-108)TCA>TTA	p.S36L	TMEM167B_uc009weu.2_Intron	NM_020141	NP_064526	Q9NRX6	KISHB_HUMAN	transmembrane protein 167B precursor	36	Extracellular (Potential).					Golgi membrane|integral to membrane					0						TGGCTGCTATCAGAGAAGAAG	0.483													127	257					0	0	0.003610	0	0
MYBPHL	343263	broad.mit.edu	37	1	109839796	109839796	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:109839796G>A	uc001dxk.1	-	4	496	c.446C>T	c.(445-447)CCT>CTT	p.P149L	MYBPHL_uc010ovh.1_Missense_Mutation_p.P126L|MYBPHL_uc001dxl.2_Intron	NM_001010985	NP_001010985	A2RUH7	MBPHL_HUMAN	myosin binding protein H-like	149	Fibronectin type-III.									ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(203;0.00519)|all_epithelial(167;0.00575)|Lung NSC(277;0.00822)		Colorectal(144;0.0306)|Lung(183;0.0681)|COAD - Colon adenocarcinoma(174;0.117)|Epithelial(280;0.197)|all cancers(265;0.225)		AATACTCTGAGGAGGGCCTGG	0.557													113	241					0	0	0.003610	0	0
GPR61	83873	broad.mit.edu	37	1	110086536	110086536	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:110086536C>T	uc001dxy.2	+	2	1575	c.892C>T	c.(892-894)CTC>TTC	p.L298F		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	298	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		ACAGTTCCTGCTCTGTTGGTT	0.602													27	54					0	0	0.006320	0	0
CD53	963	broad.mit.edu	37	1	111441773	111441773	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:111441773C>T	uc001dzw.2	+	9	787	c.616C>T	c.(616-618)CTG>TTG	p.L206L	CD53_uc001dzx.2_Silent_p.L206L|CD53_uc010owa.1_Silent_p.L147L|CD53_uc001dzy.2_Silent_p.L151L	NM_001040033	NP_001035122	P19397	CD53_HUMAN	CD53 antigen	206	Helical; (Potential).				signal transduction	integral to membrane|plasma membrane					0		all_cancers(81;1.06e-05)|all_epithelial(167;1.95e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0264)|Colorectal(144;0.0375)|all cancers(265;0.11)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.141)|LUSC - Lung squamous cell carcinoma(189;0.144)		TGCACTGACCCTGAACTGCCA	0.453													25	25					0	0	0.006320	0	0
HIPK1	204851	broad.mit.edu	37	1	114515735	114515735	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:114515735C>T	uc001eem.2	+	16	3395	c.3234C>T	c.(3232-3234)TCC>TCT	p.S1078S	HIPK1_uc001een.2_Silent_p.S1078S|HIPK1_uc001eeo.2_Silent_p.S704S|HIPK1_uc001eep.2_Silent_p.S684S|HIPK1_uc001eeq.2_Silent_p.S370S	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	1078	Interaction with TP53.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCCCTCTCTCCCAAGCCCCCT	0.647													40	69					0	0	0.007835	0	0
NRAS	4893	broad.mit.edu	37	1	115258745	115258745	+	Missense_Mutation	SNP	C	G	G	rs121434595		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:115258745C>G	uc009wgu.2	-	2	291	c.37G>C	c.(37-39)GGT>CGT	p.G13R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	13	GTP.		G -> D (in a patient with an autoimmune lymphoproliferative disorder).|G -> R (in colorectal cancer).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.G13D(174)|p.G13R(59)|p.G13V(55)|p.G13C(21)|p.G13A(16)|p.G13S(5)|p.G13G(3)|p.G13N(1)|p.G13Y(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCCCAACACCACCTGCTCCA	0.498	G13R(KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			37	67					0	0	0.003610	0	0
SPAG17	200162	broad.mit.edu	37	1	118558710	118558710	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:118558710G>A	uc001ehk.2	-	29	4233	c.4165C>T	c.(4165-4167)CAC>TAC	p.H1389Y		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1389						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GTGCCTATGTGAACCTCCACA	0.468													41	51					0	0	0.005524	0	0
Unknown	0	broad.mit.edu	37	1	148882025	148882025	+	RNA	SNP	C	T	T	rs150449871	by1000genomes	TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:148882025C>T	uc009wkv.1	+	3		c.246C>T								Homo sapiens cDNA, FLJ17483.																		TGTTTTCTAGCAGTGACAAAT	0.343													6	44					0	0	0.001984	0	0
FCGR1C	100132417	broad.mit.edu	37	1	149378159	149378159	+	RNA	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:149378159C>T	uc010pbh.1	+	6		c.1200C>T				NR_027484				Homo sapiens cDNA FLJ77773 complete cds, highly similar to Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A), mRNA.												0						GGGTGGCCATCGATCTGGACC	0.562													9	18					0	0	0.000673	0	0
PRPF3	9129	broad.mit.edu	37	1	150310701	150310701	+	Silent	SNP	G	A	A	rs143858139		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:150310701G>A	uc001eum.3	+	8	1263	c.1101G>A	c.(1099-1101)TCG>TCA	p.S367S	PRPF3_uc009wlp.2_RNA|PRPF3_uc010pca.1_Silent_p.S326S|PRPF3_uc010pcb.1_Silent_p.S318S|PRPF3_uc009wlq.1_RNA	NM_004698	NP_004689	O43395	PRPF3_HUMAN	PRP3 pre-mRNA processing factor 3 homolog	367					nuclear mRNA splicing, via spliceosome	Cajal body|cytoplasm|nuclear speck|spliceosomal complex	protein binding			ovary(1)	1	Lung NSC(24;5.57e-29)|Breast(34;0.000844)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)	Colorectal(1306;0.0149)		TCCATACTTCGACTAGGCTTG	0.428													5	59					0	0	0.000602	0	0
RPTN	126638	broad.mit.edu	37	1	152127263	152127263	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:152127263C>T	uc001ezs.1	-	3	2377	c.2312G>A	c.(2311-2313)CGA>CAA	p.R771Q		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	771	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TTGCCTGTCTCGTCTCTGACG	0.473													154	256					0	0	0.003610	0	0
LCE3D	84648	broad.mit.edu	37	1	152552383	152552383	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:152552383G>A	uc001fab.2	-	2	87	c.30C>T	c.(28-30)TGC>TGT	p.C10C		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	10					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		GTGGGGGTTGGCACTGCTGCT	0.552													20	48					0	0	0.002780	0	0
LCE1E	353135	broad.mit.edu	37	1	152759753	152759753	+	Splice_Site	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:152759753G>A	uc001fan.2	+	2	32	c.-21_splice	c.e2-1			NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E						keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCTCCCTCAGCTCCTAAGTA	0.453													63	127					0	0	0.003610	0	0
LCE1C	353133	broad.mit.edu	37	1	152777793	152777793	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:152777793G>A	uc001fap.1	-	2	213	c.162C>T	c.(160-162)TCC>TCT	p.S54S		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	54	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCCCAGAGCTGGAGCCACAGC	0.517													22	23					0	0	0.004656	0	0
CD1B	910	broad.mit.edu	37	1	158298804	158298804	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:158298804C>T	uc001frx.2	-	5	995	c.887G>A	c.(886-888)AGA>AAA	p.R296K	CD1B_uc001frw.2_Missense_Mutation_p.G134E	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	296	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					GGTGGGGTTTCCTGGCAATTG	0.453													16	41					0	0	0.003163	0	0
CD84	8832	broad.mit.edu	37	1	160535509	160535509	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:160535509C>T	uc001fwh.3	-	2	97	c.73G>A	c.(73-75)GAA>AAA	p.E25K	CD84_uc001fwf.3_Missense_Mutation_p.E25K|CD84_uc001fwg.3_Missense_Mutation_p.E25K|CD84_uc009wtn.2_Missense_Mutation_p.E25K|CD84_uc001fwi.3_Intron|CD84_uc001fwj.2_Missense_Mutation_p.E25K|CD84_uc001fwk.2_Missense_Mutation_p.E25K	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	25	Extracellular (Potential).				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GTGAAGATTTCTGAGTCTTTT	0.423													11	16					0	0	0.000673	0	0
LMX1A	4009	broad.mit.edu	37	1	165218664	165218664	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:165218664G>A	uc001gcy.1	-	3	698	c.477C>T	c.(475-477)AGC>AGT	p.S159S	LMX1A_uc001gcz.1_Silent_p.S159S	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	159						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					AGGCTGCTGGGCTCACCAGGC	0.602													16	22					0	0	0.004990	0	0
C1orf9	51430	broad.mit.edu	37	1	172526543	172526543	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:172526543C>T	uc001giq.3	+	5	883	c.567C>T	c.(565-567)GTC>GTT	p.V189V	C1orf9_uc010pmm.1_Silent_p.V189V|C1orf9_uc009wwd.2_Silent_p.V152V|C1orf9_uc010pmn.1_Silent_p.V152V|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	189					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		CTTCCTTTGTCAGTCCACCTG	0.433													47	79					0	0	0.003610	0	0
C1orf9	51430	broad.mit.edu	37	1	172558246	172558246	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:172558246C>T	uc001giq.3	+	18	2321	c.2005C>T	c.(2005-2007)CCT>TCT	p.P669S	C1orf9_uc010pmm.1_Missense_Mutation_p.P669S|C1orf9_uc009wwd.2_Missense_Mutation_p.P625S|C1orf9_uc010pmn.1_Intron|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	669					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		CTTACTACTTCCTGCGGAATC	0.418													30	40					0	0	0.002096	0	0
PAPPA2	60676	broad.mit.edu	37	1	176738746	176738746	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:176738746G>A	uc001gkz.2	+	16	5491	c.4327G>A	c.(4327-4329)GAA>AAA	p.E1443K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1443	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TTTCTAGAAGGAAATTCTGCT	0.453													18	42					0	0	0.006122	0	0
ASTN1	460	broad.mit.edu	37	1	176838039	176838039	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:176838039G>A	uc001glc.2	-	22	3800	c.3588C>T	c.(3586-3588)AAC>AAT	p.N1196N	ASTN1_uc001glb.1_Silent_p.N1196N|ASTN1_uc001gld.1_Silent_p.N1196N	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1204					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CATAGTGCTGGTTATAGTGGT	0.488													35	61					0	0	0.002522	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186934717	186934717	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:186934717C>T	uc001gsc.2	+	15	1961	c.1756C>T	c.(1756-1758)CCG>TCG	p.P586S	PLA2G4A_uc010pos.1_Missense_Mutation_p.P526S	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	586	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	CTCTAGTCCTCCGTTCAAGGT	0.428													16	48					0	0	0.006122	0	0
KDM5B	10765	broad.mit.edu	37	1	202709872	202709872	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:202709872G>A	uc001gyf.2	-	20	3130	c.3014C>T	c.(3013-3015)CCC>CTC	p.P1005L	KDM5B_uc009xag.2_Missense_Mutation_p.P1041L|KDM5B_uc001gyg.1_Missense_Mutation_p.P847L	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1005					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						CGCACCATTGGGCAGATATGC	0.453													12	38					0	0	0.000978	0	0
CHIT1	1118	broad.mit.edu	37	1	203188413	203188413	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:203188413C>T	uc001gzn.2	-	9	1056	c.960G>A	c.(958-960)CAG>CAA	p.Q320Q	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_RNA|CHIT1_uc009xal.1_Silent_p.Q111Q|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Silent_p.Q311Q	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	320					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						AGGGCACCTTCTGATCCTGGA	0.597													50	76					0	0	0.003610	0	0
INTS7	25896	broad.mit.edu	37	1	212208753	212208753	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:212208753G>A	uc001hiw.1	-	1	132	c.27C>T	c.(25-27)TTC>TTT	p.F9F	INTS7_uc009xdb.1_Silent_p.F9F|INTS7_uc001hix.1_5'UTR|INTS7_uc001hiy.1_Silent_p.F9F|INTS7_uc010pta.1_Silent_p.F9F|DTL_uc009xdc.2_5'Flank|DTL_uc010ptb.1_5'Flank|DTL_uc001hiz.3_5'Flank	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	9					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		CATCTGCCAGGAAAGACTTAG	0.512											OREG0014240	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	42					0	0	0.002780	0	0
FLVCR1	28982	broad.mit.edu	37	1	213046037	213046037	+	Missense_Mutation	SNP	C	T	T	rs144013956		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:213046037C>T	uc001hjt.2	+	3	1099	c.901C>T	c.(901-903)CGG>TGG	p.R301W		NM_014053	NP_054772	Q9Y5Y0	FLVC1_HUMAN	feline leukemia virus subgroup C cellular	301					cell death|cellular iron ion homeostasis|heme export|transmembrane transport	integral to plasma membrane	heme transporter activity|protein binding|receptor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.00733)|all cancers(67;0.013)|GBM - Glioblastoma multiforme(131;0.0845)|Epithelial(68;0.11)		AGAAAAACCTCGGTATCCACC	0.313													9	30					0	0	0.004482	0	0
CENPF	1063	broad.mit.edu	37	1	214816342	214816342	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:214816342C>T	uc001hkm.2	+	12	4835	c.4661C>T	c.(4660-4662)TCC>TTC	p.S1554F		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	1650	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		GAGCTTGAGTCCCTCTGTGAG	0.478													20	34					0	0	0.001523	0	0
USH2A	7399	broad.mit.edu	37	1	216074170	216074170	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:216074170G>A	uc001hku.1	-	39	7765	c.7378C>T	c.(7378-7380)CGT>TGT	p.R2460C		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2460	Extracellular (Potential).|Fibronectin type-III 11.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GCGTTATTACGAGCTGGTGTA	0.502										HNSCC(13;0.011)			38	68					0	0	0.002222	0	0
SLC30A10	55532	broad.mit.edu	37	1	220089084	220089084	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:220089084C>T	uc001hlw.2	-	4	1376	c.1165G>A	c.(1165-1167)GAA>AAA	p.E389K	SLC30A10_uc001hlu.1_Intron|SLC30A10_uc001hlv.2_Missense_Mutation_p.E144K|SLC30A10_uc001hlx.2_Missense_Mutation_p.E164K	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	389	Cytoplasmic (Potential).				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		TCCAGGGGTTCCTTCAAGTCC	0.522													32	74					0	0	0.002096	0	0
OBSCN	84033	broad.mit.edu	37	1	228482539	228482539	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:228482539G>A	uc009xez.1	+	43	11498	c.11454G>A	c.(11452-11454)ACG>ACA	p.T3818T	OBSCN_uc001hsn.2_Silent_p.T3818T|OBSCN_uc001hsq.1_Silent_p.T1074T	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3818	Ig-like 39.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding	p.G3818E(1)		stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AAGGGGCCACGGCCGTGCTGC	0.582													40	86					0	0	0.006230	0	0
URB2	9816	broad.mit.edu	37	1	229771572	229771572	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:229771572C>T	uc001hts.1	+	4	1348	c.1212C>T	c.(1210-1212)CCC>CCT	p.P404P	URB2_uc009xfd.1_Silent_p.P404P	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	404						nucleolus				central_nervous_system(2)|ovary(1)	3						CACAAGCACCCATACCGGCCT	0.517													23	40					0	0	0.002780	0	0
LGALS8	3964	broad.mit.edu	37	1	236702356	236702356	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:236702356G>A	uc001hxz.1	+	5	693	c.312G>A	c.(310-312)GAG>GAA	p.E104E	LGALS8_uc001hxw.1_Silent_p.E104E|LGALS8_uc001hxy.1_Silent_p.E104E|LGALS8_uc009xgg.1_RNA|LGALS8_uc001hya.1_Silent_p.E104E|LGALS8_uc001hyb.1_Silent_p.E104E|LGALS8_uc001hyc.1_Silent_p.E104E	NM_201543	NP_963837	O00214	LEG8_HUMAN	galectin-8 isoform b	104	Galectin 1.					cytoplasm|extracellular space	sugar binding			ovary(1)	1	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.0253)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			AGTCTTTTGAGATCGTGATTA	0.453													10	37					0	0	0.000673	0	0
AHCTF1	25909	broad.mit.edu	37	1	247007213	247007213	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:247007213G>A	uc001ibu.1	-	33	6416	c.6409C>T	c.(6409-6411)CCT>TCT	p.P2137S	AHCTF1_uc001ibv.1_Missense_Mutation_p.P2146S|AHCTF1_uc009xgs.1_Missense_Mutation_p.P998S	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	2137	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			AGCTGTGCAGGAACCTCTATT	0.303													6	20					0	0	0.001984	0	0
OR2C3	81472	broad.mit.edu	37	1	247695273	247695273	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:247695273C>T	uc009xgy.2	-	2	903	c.541G>A	c.(541-543)GAG>AAG	p.E181K	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AGGGGCATCTCGCAAAAGAAG	0.567													11	15					0	0	0.000978	0	0
OR2M2	391194	broad.mit.edu	37	1	248343371	248343371	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:248343371C>T	uc010pzf.1	+	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CGTTCCTCTTCTTTCTGGTCC	0.493													78	146					0	0	0.003610	0	0
OR2T3	343173	broad.mit.edu	37	1	248637526	248637526	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:248637526C>T	uc001iel.1	+	1	875	c.875C>T	c.(874-876)CCC>CTC	p.P292L		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTGCTGAACCCCCTCATTTAC	0.493													27	215					0	0	0.002836	0	0
OR2T34	127068	broad.mit.edu	37	1	248737184	248737184	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:248737184G>A	uc001iep.1	-	1	875	c.875C>T	c.(874-876)CCC>CTC	p.P292L		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTAAATGAGGGGGTTCAGCAC	0.488													6	23					0	0	0.001855	0	0
OR2T34	127068	broad.mit.edu	37	1	248738036	248738036	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr1:248738036G>A	uc001iep.1	-	1	23	c.23C>T	c.(22-24)TCT>TTT	p.S8F		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTGATTCTGAGAAGTCTGATT	0.453													18	51					0	0	0.002780	0	0
PFKFB3	5209	broad.mit.edu	37	10	6258674	6258674	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr10:6258674C>T	uc001ije.2	+	5	756	c.372C>T	c.(370-372)TTC>TTT	p.F124F	PFKFB3_uc001ijd.2_Silent_p.F104F|PFKFB3_uc009xii.2_RNA|PFKFB3_uc010qaw.1_Silent_p.F138F|PFKFB3_uc001ijf.2_Silent_p.F124F	NM_004566	NP_004557	Q16875	F263_HUMAN	6-phosphofructo-2-kinase/fructose-2,	124	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(2)|central_nervous_system(1)	3						ATCAGGTTTTCGATGCCACCA	0.438													55	68					0	0	0.003610	0	0
MPP7	143098	broad.mit.edu	37	10	28358748	28358748	+	Missense_Mutation	SNP	C	T	T	rs147738330		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr10:28358748C>T	uc001iua.1	-	15	1561	c.1157G>A	c.(1156-1158)CGA>CAA	p.R386Q	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.R386Q|MPP7_uc009xla.2_Missense_Mutation_p.R386Q|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	386	Guanylate kinase-like.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						CAGCAGCTTTCGTTTCAGTTC	0.438													10	9					0	0	0.000673	0	0
PCDH15	65217	broad.mit.edu	37	10	55973797	55973797	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr10:55973797C>T	uc001jju.1	-	10	1392	c.997G>A	c.(997-999)GAT>AAT	p.D333N	PCDH15_uc010qhq.1_Missense_Mutation_p.D338N|PCDH15_uc010qhr.1_Missense_Mutation_p.D333N|PCDH15_uc010qhs.1_Missense_Mutation_p.D338N|PCDH15_uc010qht.1_Missense_Mutation_p.D333N|PCDH15_uc010qhu.1_Missense_Mutation_p.D333N|PCDH15_uc001jjv.1_Missense_Mutation_p.D311N|PCDH15_uc010qhv.1_Missense_Mutation_p.D333N|PCDH15_uc010qhw.1_Missense_Mutation_p.D296N|PCDH15_uc010qhx.1_Missense_Mutation_p.D333N|PCDH15_uc010qhy.1_Missense_Mutation_p.D338N|PCDH15_uc010qhz.1_Missense_Mutation_p.D333N|PCDH15_uc010qia.1_Missense_Mutation_p.D311N|PCDH15_uc010qib.1_Missense_Mutation_p.D311N|PCDH15_uc001jjw.2_Missense_Mutation_p.D333N	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	333	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CGTGGGTAATCCTCAGGAGTC	0.383										HNSCC(58;0.16)			27	14					0	0	0.001512	0	0
PDCD11	22984	broad.mit.edu	37	10	105203821	105203821	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr10:105203821G>A	uc001kwy.1	+	34	5361	c.5274G>A	c.(5272-5274)AAG>AAA	p.K1758K		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	1758					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		TGCCTAGCAAGGAGCGTGAGT	0.602													13	11					0	0	0.001368	0	0
C10orf46	143384	broad.mit.edu	37	10	120514265	120514265	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr10:120514265T>C	uc001lds.1	-	1	494	c.10A>G	c.(10-12)AGC>GGC	p.S4G	C10orf46_uc010qst.1_RNA	NM_153810	NP_722517	Q86Y37	CJ046_HUMAN	chromosome 10 open reading frame 46	4					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex	ubiquitin protein ligase binding				0		Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0131)		TCTTCCATGCTTTCCTCCATC	0.692													3	54					0	0	0.004672	0	0
FGFR2	2263	broad.mit.edu	37	10	123298174	123298174	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr10:123298174C>T	uc010qtk.1	-	6	1327	c.680G>A	c.(679-681)GGA>GAA	p.G227E	FGFR2_uc010qtg.1_Missense_Mutation_p.G227E|FGFR2_uc010qth.1_Missense_Mutation_p.G112E|FGFR2_uc010qti.1_Missense_Mutation_p.G138E|FGFR2_uc010qtj.1_Missense_Mutation_p.G227E|FGFR2_uc010qtl.1_Missense_Mutation_p.G227E|FGFR2_uc010qtm.1_Missense_Mutation_p.G112E|FGFR2_uc001lfl.3_Missense_Mutation_p.G227E|FGFR2_uc001lfm.2_Missense_Mutation_p.G138E|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Missense_Mutation_p.G246E|FGFR2_uc010qto.1_Missense_Mutation_p.G131E|FGFR2_uc001lfo.1_Missense_Mutation_p.G246E|FGFR2_uc010qtp.1_Missense_Mutation_p.G246E|FGFR2_uc010qtq.1_Missense_Mutation_p.G246E	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	227	Ig-like C2-type 2.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding	p.G227E(1)		endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GGTATAATTTCCCTTGTCAGA	0.478		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				33	14					0	0	0.002096	0	0
DMBT1	1755	broad.mit.edu	37	10	124402843	124402843	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr10:124402843G>A	uc001lgk.1	+	53	7277	c.7171G>A	c.(7171-7173)GAA>AAA	p.E2391K	DMBT1_uc001lgl.1_Missense_Mutation_p.E2381K|DMBT1_uc001lgm.1_Missense_Mutation_p.E1763K|DMBT1_uc009xzz.1_Missense_Mutation_p.E2390K|DMBT1_uc010qtx.1_Missense_Mutation_p.E1111K|DMBT1_uc009yab.1_Missense_Mutation_p.E1094K|DMBT1_uc009yac.1_Missense_Mutation_p.E685K	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2391					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CTCCTACCAGGAAAAGGTGGA	0.617													39	11					0	0	0.004878	0	0
PSTK	118672	broad.mit.edu	37	10	124742977	124742977	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr10:124742977C>T	uc001lgy.1	+	3	1138	c.698C>T	c.(697-699)TCG>TTG	p.S233L		NM_153336	NP_699167	Q8IV42	PSTK_HUMAN	phosphoseryl-tRNA kinase	233							ATP binding|kinase activity			liver(1)	1		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.0686)|COAD - Colon adenocarcinoma(40;0.0725)		GCATGTGCTTCGGAGGCCAGG	0.383													15	15					0	0	0.004990	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133967326	133967326	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr10:133967326G>A	uc001lkx.3	+	17	2131	c.2131G>A	c.(2131-2133)GAG>AAG	p.E711K	JAKMIP3_uc009yba.1_Missense_Mutation_p.E148K	NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TCTGGAGAGCGAGAAGGTTGG	0.597													96	44					0	0	0.003610	0	0
PHRF1	57661	broad.mit.edu	37	11	597425	597425	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:597425C>T	uc001lqe.2	+	8	880	c.749C>T	c.(748-750)TCC>TTC	p.S250F	PHRF1_uc010qwc.1_Missense_Mutation_p.S250F|PHRF1_uc010qwd.1_Missense_Mutation_p.S249F|PHRF1_uc010qwe.1_Missense_Mutation_p.S246F|PHRF1_uc009ybz.1_Missense_Mutation_p.S41F	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	250							RNA polymerase binding|zinc ion binding				0						GAGGAGGTCTCCCTGCTCTTG	0.647													4	27					0	0	0.000602	0	0
PHRF1	57661	broad.mit.edu	37	11	607444	607444	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:607444C>T	uc001lqe.2	+	14	2119	c.1988C>T	c.(1987-1989)CCG>CTG	p.P663L	PHRF1_uc010qwc.1_Missense_Mutation_p.P662L|PHRF1_uc010qwd.1_Missense_Mutation_p.P661L|PHRF1_uc010qwe.1_Missense_Mutation_p.P659L|PHRF1_uc009ybz.1_Missense_Mutation_p.P453L|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	663							RNA polymerase binding|zinc ion binding				0						AGTGTGGTGCCGGGGCCTCCC	0.592													15	103					0	0	0.003163	0	0
CTR9	9646	broad.mit.edu	37	11	10786220	10786220	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:10786220C>T	uc001mja.2	+	12	1688	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	513	TPR 10.				histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		TGTGTGAATTCCATGAAGCAG	0.378													13	15					0	0	0.002450	0	0
SAA1	6288	broad.mit.edu	37	11	18291328	18291328	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:18291328G>A	uc010rda.1	+	4	518	c.295G>A	c.(295-297)GCT>ACT	p.A99T	SAA1_uc010rdb.1_Missense_Mutation_p.A99T	NM_000331	NP_000322	P02735	SAA_HUMAN	serum amyloid A1 preproprotein	99				ADQAAN -> SEATVK (in Ref. 11; AA sequence).	acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	GGCTGATCAGGCTGCCAATGA	0.522													37	31					0	0	0.004289	0	0
LUZP2	338645	broad.mit.edu	37	11	25100138	25100138	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:25100138A>T	uc001mqs.2	+	12	1209	c.975A>T	c.(973-975)AAA>AAT	p.K325N	LUZP2_uc009yif.2_Missense_Mutation_p.K239N|LUZP2_uc009yig.2_Missense_Mutation_p.K283N	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	325						extracellular region				ovary(1)|skin(1)	2						GTGAGGTGAAAAAAGCCCCAG	0.343													44	39					0	0	0.003610	0	0
MPPED2	744	broad.mit.edu	37	11	30433034	30433034	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:30433034G>A	uc001msr.2	-	6	986	c.866C>T	c.(865-867)CCA>CTA	p.P289L	MPPED2_uc001msq.3_Intron|MPPED2_uc009yji.2_Missense_Mutation_p.P163L	NM_001584	NP_001575	Q15777	MPPD2_HUMAN	metallophosphoesterase domain containing 2	289					nervous system development		hydrolase activity|metal ion binding			skin(1)	1						CTGTGGGTTTGGAAGGTCAAA	0.423													22	17					0	0	0.002299	0	0
HIPK3	10114	broad.mit.edu	37	11	33374997	33374997	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:33374997C>T	uc001mul.1	+	17	3801	c.3531C>T	c.(3529-3531)ACC>ACT	p.T1177T	HIPK3_uc001mum.1_Silent_p.T1156T|HIPK3_uc009yjv.1_Silent_p.T1156T	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	1177					anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity	p.T1177A(1)		large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						CATCCCCAACCATTCATCAGA	0.458													67	50					0	0	0.003610	0	0
ABTB2	25841	broad.mit.edu	37	11	34226129	34226129	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:34226129G>A	uc001mvl.1	-	2	664	c.434C>T	c.(433-435)TCC>TTC	p.S145F		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	145							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				GGCCAGGAGGGACTGCTCCAG	0.652													21	16					0	0	0.001216	0	0
PRDM11	56981	broad.mit.edu	37	11	45117445	45117445	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:45117445G>A	uc001myo.2	+	2	338	c.89G>A	c.(88-90)AGA>AAA	p.R30K		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	30										upper_aerodigestive_tract(1)	1						ctttaccagagagagaaagta	0.035													22	29					0	0	0.001523	0	0
HARBI1	283254	broad.mit.edu	37	11	46625317	46625317	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:46625317G>A	uc001ncy.2	-	3	1061	c.813C>T	c.(811-813)TTC>TTT	p.F271F		NM_173811	NP_776172	Q96MB7	HARB1_HUMAN	harbinger transposase derived 1	271						cytoplasm|nucleus	metal ion binding|nuclease activity				0						CCAGGCAGCGGAATCGGGAGC	0.512													21	18					0	0	0.003330	0	0
HARBI1	283254	broad.mit.edu	37	11	46637536	46637537	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:46637536_46637537GG>AA	uc001ncy.2	-	2	499_500	c.251_252CC>TT	c.(250-252)TCC>TTT	p.S84F	KIAA0652_uc009yld.2_5'Flank|KIAA0652_uc001nda.2_5'Flank|KIAA0652_uc001ndb.2_5'Flank|KIAA0652_uc001ncz.2_5'Flank|KIAA0652_uc001ndc.2_5'Flank|KIAA0652_uc010rgv.1_5'Flank	NM_173811	NP_776172	Q96MB7	HARB1_HUMAN	harbinger transposase derived 1	84						cytoplasm|nucleus	metal ion binding|nuclease activity				0						GAGTCTGGAAGGAACCTGAGGT	0.52													19	93					0	0	0.004672	0	0
OR5D14	219436	broad.mit.edu	37	11	55563203	55563203	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:55563203C>T	uc010rim.1	+	1	172	c.172C>T	c.(172-174)CAC>TAC	p.H58Y		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				CCCCAAATTTCACACTCCTAT	0.393													48	43					0	0	0.003610	0	0
OR4D6	219983	broad.mit.edu	37	11	59225123	59225123	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:59225123G>A	uc010rku.1	+	1	690	c.690G>A	c.(688-690)GGG>GGA	p.G230G		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCCACTCTGGGGAGGGGCGGA	0.557													46	39					0	0	0.003610	0	0
OR4D9	390199	broad.mit.edu	37	11	59282862	59282862	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:59282862G>A	uc010rkv.1	+	1	477	c.477G>A	c.(475-477)CAG>CAA	p.Q159Q		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCATAGCGCAGATTTCTCTAT	0.547													50	36					0	0	0.003610	0	0
DAGLA	747	broad.mit.edu	37	11	61503096	61503096	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:61503096C>T	uc001nsa.2	+	11	1303	c.1192C>T	c.(1192-1194)CGG>TGG	p.R398W		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	398	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		GATCAGTATCCGGGGGACCCT	0.642													6	46					0	0	0.001984	0	0
RELA	5970	broad.mit.edu	37	11	65427199	65427199	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:65427199C>A	uc001ofg.2	-	6	637	c.497G>T	c.(496-498)CGG>CTG	p.R166L	RELA_uc001ofh.2_Missense_Mutation_p.R163L|RELA_uc010ron.1_Missense_Mutation_p.R177L|RELA_uc009yqr.2_Missense_Mutation_p.R113L|RELA_uc001ofe.2_Missense_Mutation_p.R166L|RELA_uc001off.2_Missense_Mutation_p.R166L|RELA_uc009yqs.1_RNA	NM_021975	NP_068810	Q04206	TF65_HUMAN	v-rel reticuloendotheliosis viral oncogene	166	RHD.				anti-apoptosis|cellular defense response|cytokine-mediated signaling pathway|defense response to virus|inflammatory response|innate immune response|interspecies interaction between organisms|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription, DNA-dependent|nerve growth factor receptor signaling pathway|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of inflammatory response|response to interleukin-1|response to UV-B|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|transcription factor complex	activating transcription factor binding|chromatin binding|identical protein binding|NF-kappaB binding|phosphate binding|protein kinase binding|protein N-terminus binding|repressing transcription factor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding			lung(3)|ovary(1)	4						TGATGGGTCCCGCACTGTCAC	0.597													4	90					0.000602214	0.000979689	0.000602	1	0
PC	5091	broad.mit.edu	37	11	66638920	66638920	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:66638920T>C	uc001ojn.1	-	4	402	c.353A>G	c.(352-354)TAC>TGC	p.Y118C	PC_uc001ojo.1_Missense_Mutation_p.Y118C|PC_uc001ojp.1_Missense_Mutation_p.Y118C	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	118	Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	GAGGAACCCGTAGCCAGGGTG	0.632													62	48					0	0	0.003610	0	0
LRRC32	2615	broad.mit.edu	37	11	76371809	76371809	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:76371809G>A	uc001oxq.3	-	3	1071	c.828C>T	c.(826-828)CTC>CTT	p.L276L	LRRC32_uc001oxr.3_Silent_p.L276L|LRRC32_uc010rsf.1_Silent_p.L276L	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	276	LRR 10.|Extracellular (Potential).					integral to plasma membrane					0						GGAGCCGGATGAGGTTGTTGG	0.642													39	24					0	0	0.006999	0	0
GDPD4	220032	broad.mit.edu	37	11	76940248	76940248	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:76940248G>A	uc001oyf.2	-	14	1670	c.1419C>T	c.(1417-1419)CTC>CTT	p.L473L		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	473	Helical; (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding			skin(1)	1						TATCTGCAAGGAGCCACATGA	0.313													14	8					0	0	0.004007	0	0
FOLH1B	219595	broad.mit.edu	37	11	89405092	89405092	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:89405092G>A	uc001pda.2	+	5	745	c.219G>A	c.(217-219)TGG>TGA	p.W73*		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	73					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGGACTCATGGGTGTTTGGTG	0.413													42	48					0	0	0.003610	0	0
HEPHL1	341208	broad.mit.edu	37	11	93822029	93822029	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:93822029G>A	uc001pep.2	+	12	2346	c.2189G>A	c.(2188-2190)GGG>GAG	p.G730E	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	730	Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				CAGCGGTACGGGATGATAAGA	0.522													6	55					0	0	0.001168	0	0
PIWIL4	143689	broad.mit.edu	37	11	94326773	94326773	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:94326773C>T	uc001pfa.2	+	9	1327	c.1116C>T	c.(1114-1116)CTC>CTT	p.L372L	PIWIL4_uc010rue.1_RNA|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	372	PAZ.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				AGGCTCAGCTCGCCCACCTGA	0.463													7	57					0	0	0.003080	0	0
CNTN5	53942	broad.mit.edu	37	11	99690287	99690287	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:99690287C>T	uc001pga.2	+	4	407	c.68C>T	c.(67-69)TCT>TTT	p.S23F	CNTN5_uc009ywv.1_Missense_Mutation_p.S23F|CNTN5_uc001pfz.2_Missense_Mutation_p.S23F|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	23					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TATTCAAAATCTCTTCCTGGT	0.323													22	53					0	0	0.003330	0	0
MLL	4297	broad.mit.edu	37	11	118368764	118368765	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:118368764_118368765GG>AA	uc001pta.2	+	21	5792_5793	c.5769_5770GG>AA	c.(5767-5772)ATGGCT>ATAACT	p.1923_1924MA>IT	MLL_uc001ptb.2_Missense_Mutation_p.1926_1927MA>IT	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1923_1924					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		ATGTGCATATGGCTGTGATCAG	0.416			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								40	42					0	0	0.004672	0	0
OR10G8	219869	broad.mit.edu	37	11	123900997	123900998	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:123900997_123900998CC>TT	uc001pzp.1	+	1	668_669	c.668_669CC>TT	c.(667-669)TCC>TTT	p.S223F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ATCGTCTGTTCCATCCTGCGGA	0.53													34	35					0	0	0.004672	0	0
B3GAT1	27087	broad.mit.edu	37	11	134253705	134253705	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr11:134253705G>A	uc001qhq.2	-	4	751	c.490C>T	c.(490-492)CCG>TCG	p.P164S	B3GAT1_uc001qhr.2_Missense_Mutation_p.P164S|B3GAT1_uc010scv.1_Missense_Mutation_p.P177S	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	164	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		GTGCCCCGCGGGATGCGTGGG	0.711													4	6					0	0	0.000602	0	0
GALNT8	26290	broad.mit.edu	37	12	4835880	4835880	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:4835880C>T	uc001qne.1	+	2	486	c.394C>T	c.(394-396)CTT>TTT	p.L132F		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	132	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						GGGCGAGGATCTTTCTGAGGC	0.522													13	13					0	0	0.001368	0	0
CLSTN3	9746	broad.mit.edu	37	12	7303613	7303613	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:7303613G>A	uc001qsr.2	+	16	2759	c.2481G>A	c.(2479-2481)CCG>CCA	p.P827P	CLSTN3_uc001qss.2_Silent_p.P839P	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	827	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						ACCAGCCCCCGCCTGAGATGG	0.647													11	6					0	0	0.001368	0	0
CD163L1	283316	broad.mit.edu	37	12	7527907	7527907	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:7527907G>A	uc001qsy.2	-	11	2997	c.2971C>T	c.(2971-2973)CAT>TAT	p.H991Y	CD163L1_uc010sge.1_Missense_Mutation_p.H1001Y	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	991	SRCR 9.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity	p.H991R(1)		ovary(8)|skin(2)|central_nervous_system(1)	11						GTATTTCCATGGATACAGGGA	0.438													9	21					0	0	0.004482	0	0
GDF3	9573	broad.mit.edu	37	12	7848075	7848075	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:7848075G>A	uc001qte.2	-	1	286	c.250C>T	c.(250-252)CGC>TGC	p.R84C		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	84					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						GGGAGAAAGCGAAGTACATTC	0.483													27	52					0	0	0.002096	0	0
Unknown	0	broad.mit.edu	37	12	24736579	24736579	+	RNA	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:24736579G>A	uc001rgb.1	-	1		c.524C>T								Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		GGGGGCCCAGGACCCCACAGC	0.547													29	56					0	0	0.001512	0	0
COL2A1	1280	broad.mit.edu	37	12	48368481	48368481	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:48368481C>T	uc001rqu.2	-	52	4232	c.4051G>A	c.(4051-4053)GAA>AAA	p.E1351K	COL2A1_uc001rqt.2_Missense_Mutation_p.E132K|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.E1282K	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	1351	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	TTGATGGTTTCTCCAAACCAG	0.498													42	105					0	0	0.003610	0	0
COL2A1	1280	broad.mit.edu	37	12	48368636	48368636	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:48368636C>T	uc001rqu.2	-	52	4077	c.3896G>A	c.(3895-3897)TGG>TAG	p.W1299*	COL2A1_uc001rqt.2_Nonsense_Mutation_p.W80*|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Nonsense_Mutation_p.W1230*	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	1299	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GGGGTCAATCCAGTAGTCTCC	0.562													28	64					0	0	0.001512	0	0
KRT6B	3854	broad.mit.edu	37	12	52843335	52843335	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:52843335C>T	uc001sak.2	-	5	1043	c.995G>A	c.(994-996)AGC>AAC	p.S332N		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	332	Rod.|Linker 12.				ectoderm development	keratin filament	structural constituent of cytoskeleton	p.S332T(1)		ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		AGCGATGATGCTGTCCAGGTC	0.557													57	91					0	0	0.003610	0	0
GPR84	53831	broad.mit.edu	37	12	54757371	54757371	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:54757371C>A	uc001sfu.2	-	2	355	c.265G>T	c.(265-267)GGT>TGT	p.G89C		NM_020370	NP_065103	Q9NQS5	GPR84_HUMAN	G protein-coupled receptor 84	89	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			breast(2)	2						AAGGTGGCACCGGTGCGCCAG	0.577													3	21					0.004672	0.00757303	0.004672	1	0
NCKAP1L	3071	broad.mit.edu	37	12	54925358	54925358	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:54925358C>T	uc001sgc.3	+	24	2767	c.2688C>T	c.(2686-2688)CCC>CCT	p.P896P	NCKAP1L_uc010sox.1_Silent_p.P438P|NCKAP1L_uc010soy.1_Silent_p.P846P	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	896					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CCCTGCTGCCCCAGCTGACAG	0.512													33	51					0	0	0.003755	0	0
RDH16	8608	broad.mit.edu	37	12	57351142	57351142	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:57351142C>T	uc001smi.3	-	1	277	c.105G>A	c.(103-105)ACG>ACA	p.T35T	RDH16_uc009zpa.2_5'UTR|RDH16_uc010sqx.1_RNA	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	35	NAD (By similarity).|Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						AGTCACAGCCCGTGATGAACA	0.597													28	59					0	0	0.004656	0	0
PTPRB	5787	broad.mit.edu	37	12	70989867	70989867	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:70989867C>T	uc001swb.3	-	3	596	c.566G>A	c.(565-567)GGA>GAA	p.G189E	PTPRB_uc010sto.1_Missense_Mutation_p.G189E|PTPRB_uc010stp.1_Missense_Mutation_p.G189E|PTPRB_uc001swc.3_Missense_Mutation_p.G407E|PTPRB_uc001swa.3_Missense_Mutation_p.G407E|PTPRB_uc001swd.3_Missense_Mutation_p.G406E|PTPRB_uc009zrr.1_Missense_Mutation_p.G286E|PTPRB_uc001swe.2_Missense_Mutation_p.G407E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	189	Fibronectin type-III 2.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGAACGTTTTCCTCCAGAAAC	0.328													4	18					0	0	0.000248	0	0
DEPDC4	120863	broad.mit.edu	37	12	100657603	100657603	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:100657603C>T	uc001thi.2	-	2	229	c.226G>A	c.(226-228)GAA>AAA	p.E76K	DEPDC4_uc001thh.1_RNA|DEPDC4_uc001thj.1_Intron|DEPDC4_uc009ztv.1_Missense_Mutation_p.E76K|DEPDC4_uc001thk.1_Intron|DEPDC4_uc001thl.1_Intron	NM_152317	NP_689530	Q8N2C3	DEPD4_HUMAN	DEP domain containing 4	76	DEP.				intracellular signal transduction						0						CTTTTTATTTCCACTTGGGCC	0.383													15	34					0	0	0.002450	0	0
OAS3	4940	broad.mit.edu	37	12	113386766	113386766	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:113386766C>T	uc001tug.2	+	6	1217	c.1130C>T	c.(1129-1131)CCA>CTA	p.P377L		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	377	Linker.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						GCTGTGTACCCAAGAGCAGGG	0.612													8	12					0	0	0.003080	0	0
OAS2	4939	broad.mit.edu	37	12	113425019	113425019	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:113425019C>T	uc001tuj.2	+	2	494	c.354C>T	c.(352-354)TTC>TTT	p.F118F	OAS2_uc001tuh.2_Silent_p.F118F|OAS2_uc001tui.1_Silent_p.F118F	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	118	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						AAAACAATTTCGAGATCCAGA	0.458													18	38					0	0	0.001216	0	0
NCOR2	9612	broad.mit.edu	37	12	124831171	124831171	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:124831171A>G	uc010tba.1	-	31	4439	c.4322T>C	c.(4321-4323)CTG>CCG	p.L1441P	NCOR2_uc010tay.1_Missense_Mutation_p.L1440P|NCOR2_uc010taz.1_Missense_Mutation_p.L1424P|NCOR2_uc010tbb.1_Missense_Mutation_p.L1433P|NCOR2_uc010tbc.1_Missense_Mutation_p.L1423P|NCOR2_uc001ugj.1_Missense_Mutation_p.L1441P	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1441					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CGTGTGCCGCAGCTCCTCGCG	0.721													10	19					0	0	0.000673	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138581	126138581	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:126138581G>A	uc001uhe.1	+	9	2570	c.2562G>A	c.(2560-2562)ATG>ATA	p.M854I	TMEM132B_uc001uhf.1_Missense_Mutation_p.M366I	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	854	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGTCTCCCATGGAAGGGAAGA	0.512													15	32					0	0	0.002450	0	0
TMEM132D	121256	broad.mit.edu	37	12	130184600	130184600	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:130184600C>T	uc009zyl.1	-	2	1051	c.723G>A	c.(721-723)AGG>AGA	p.R241R		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	241	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TCGCGTCTTCCCTGACGCAGT	0.632													16	51					0	0	0.007413	0	0
LOC284232	284232	broad.mit.edu	37	13	19409978	19409978	+	RNA	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr13:19409978G>A	uc010tcj.1	-	1		c.36132C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						cggagagggggatgtggcagg	0.08													6	5					0	0	0.001168	0	0
STARD13	90627	broad.mit.edu	37	13	33679773	33679773	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr13:33679773G>A	uc001uuw.2	-	14	3425	c.3299C>T	c.(3298-3300)TCT>TTT	p.S1100F	STARD13_uc001uuu.2_Missense_Mutation_p.S1092F|STARD13_uc001uuv.2_Missense_Mutation_p.S982F|STARD13_uc001uux.2_Missense_Mutation_p.S1065F|STARD13_uc010tec.1_RNA	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	1100	START.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		GGGCTGGAAAGAGTTTCTAAT	0.483													55	30					0	0	0.003610	0	0
IPO5	3843	broad.mit.edu	37	13	98662177	98662177	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr13:98662177C>T	uc001vnf.1	+	16	1908	c.1843C>T	c.(1843-1845)CTT>TTT	p.L615F	IPO5_uc001vne.2_Missense_Mutation_p.L633F|IPO5_uc010tik.1_Missense_Mutation_p.L490F|IPO5_uc010til.1_Missense_Mutation_p.L555F|IPO5_uc001vng.1_Missense_Mutation_p.L236F	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	615					interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						GTGCAAAATCCTTGGAAAAGA	0.368													3	22					0	0	0.004672	0	0
STK24	8428	broad.mit.edu	37	13	99171631	99171631	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr13:99171631G>A	uc001vnm.1	-	2	410	c.175C>T	c.(175-177)CAG>TAG	p.Q59*	STK24_uc001vnn.1_Nonsense_Mutation_p.Q47*|STK24_uc010tim.1_Nonsense_Mutation_p.Q47*	NM_003576	NP_003567	Q9Y6E0	STK24_HUMAN	serine/threonine kinase 24 isoform a	59	Protein kinase.				cellular component disassembly involved in apoptosis|signal transduction	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			ACCACTTTCTGAGTCCGATTG	0.433													112	91					0	0	0.003610	0	0
FAM70B	348013	broad.mit.edu	37	13	114472093	114472093	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr13:114472093G>A	uc001vuh.2	+	3	239	c.212G>A	c.(211-213)GGA>GAA	p.G71E		NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	71	Helical; (Potential).					integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			TCTTTCTTAGGAATTATTGGC	0.433													11	96					0	0	0.001368	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216343	20216343	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:20216343G>A	uc010tkt.1	+	1	757	c.757G>A	c.(757-759)GTG>ATG	p.V253M		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCTGATCTTCGTGCCATGCGT	0.473													28	178					0	0	0.002445	0	0
OR4K1	79544	broad.mit.edu	37	14	20403841	20403841	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:20403841G>A	uc001vwj.1	+	1	16	c.16G>A	c.(16-18)GAA>AAA	p.E6K		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TCACACAAATGAATCGATGGT	0.343													80	314					0	0	0.003610	0	0
OR4K14	122740	broad.mit.edu	37	14	20482618	20482618	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:20482618G>A	uc010tky.1	-	1	735	c.735C>T	c.(733-735)ATC>ATT	p.I245I		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TCACTACCATGATATGTGCAG	0.493													4	12					0	0	0.000248	0	0
OR4E2	26686	broad.mit.edu	37	14	22133882	22133882	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:22133882G>A	uc010tmd.1	+	1	586	c.586G>A	c.(586-588)GGA>AGA	p.G196R		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	196	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		ATACCTCACAGGAATACTGAT	0.468													22	45					0	0	0.002299	0	0
TGM1	7051	broad.mit.edu	37	14	24724283	24724283	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:24724283G>A	uc001wod.2	-	12	1946	c.1822C>T	c.(1822-1824)CGC>TGC	p.R608C	TGM1_uc010tog.1_Missense_Mutation_p.R166C	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	608					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	TTCACTGTGCGGCGGCTGCTG	0.562													17	39					0	0	0.004990	0	0
MIA2	117153	broad.mit.edu	37	14	39722039	39722039	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:39722039C>T	uc001wux.2	+	5	1849	c.1655C>T	c.(1654-1656)TCG>TTG	p.S552L		NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		GATGAAAATTCGAAACCATCA	0.378													25	52					0	0	0.004656	0	0
C14orf39	317761	broad.mit.edu	37	14	60903603	60903603	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:60903603G>A	uc001xez.3	-	18	1834	c.1724C>T	c.(1723-1725)TCA>TTA	p.S575L	C14orf39_uc010apo.2_Missense_Mutation_p.S286L	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	575										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TGAGGAAGATGAAAAACCTTT	0.303													49	112					0	0	0.003610	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65209985	65209985	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:65209985C>T	uc001xho.1	+	17	3493	c.3224C>T	c.(3223-3225)CCC>CTC	p.P1075L	PLEKHG3_uc001xhn.1_Missense_Mutation_p.P1019L|PLEKHG3_uc001xhp.2_Missense_Mutation_p.P1196L|PLEKHG3_uc010aqh.1_Missense_Mutation_p.P617L|PLEKHG3_uc001xhq.1_Missense_Mutation_p.P580L	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	1075					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		cgcggcccACCCGTCAACAGG	0.592													10	20					0	0	0.006214	0	0
SPTB	6710	broad.mit.edu	37	14	65260193	65260193	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:65260193C>T	uc001xht.2	-	13	2242	c.2188G>A	c.(2188-2190)GAC>AAC	p.D730N	SPTB_uc001xhr.2_Missense_Mutation_p.D730N|SPTB_uc001xhs.2_Missense_Mutation_p.D730N|SPTB_uc001xhu.2_Missense_Mutation_p.D730N	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	730	Spectrin 5.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GCAGCCAGGTCCTTCAGCTGG	0.592													18	24					0	0	0.001882	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713174	70713174	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:70713174C>T	uc010ttg.1	-	1	1345	c.694G>A	c.(694-696)GAA>AAA	p.E232K		NR_003951				SubName: Full=ADAM21-like protein;												0						ATAAAGATTTCCCCCAATCTT	0.458													17	45					0	0	0.007413	0	0
RGS6	9628	broad.mit.edu	37	14	72944999	72944999	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:72944999C>T	uc001xna.3	+	12	1339	c.816C>T	c.(814-816)ATC>ATT	p.I272I	RGS6_uc010ttn.1_Silent_p.I272I|RGS6_uc001xmx.3_Silent_p.I272I|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Silent_p.I272I|RGS6_uc010ttp.1_Silent_p.I203I|RGS6_uc001xmz.1_Silent_p.I133I	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	272	G protein gamma.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		ACGCACAGATCGACAGACATT	0.338													7	22					0	0	0.001984	0	0
TMED8	283578	broad.mit.edu	37	14	77808281	77808281	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:77808281C>A	uc001xto.1	-	6	811	c.811G>T	c.(811-813)GGT>TGT	p.G271C	TMED8_uc010ast.1_RNA|TMED8_uc001xtn.1_Missense_Mutation_p.G115C	NM_213601	NP_998766	Q6PL24	TMED8_HUMAN	transmembrane emp24 protein transport domain	271	GOLD.				transport	integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0281)		CCATAGCGACCCCGCAAGGAG	0.602													7	29					6.40141e-05	0.000104328	0.000978	1	0
C14orf174	161394	broad.mit.edu	37	14	77845406	77845406	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:77845406G>A	uc001xtq.1	+	1	1645	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	TMED8_uc010ast.1_5'Flank|TMED8_uc001xto.1_5'Flank	NM_001010860	NP_001010860	Q9P1V8	SAM15_HUMAN	hypothetical protein LOC161394	549	SAM.										0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0278)		GGATCCAGAGGAAGTTGCAGA	0.418													17	29					0	0	0.004007	0	0
KCNK10	54207	broad.mit.edu	37	14	88652025	88652025	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:88652025C>T	uc001xwo.2	-	7	1928	c.1471G>A	c.(1471-1473)GAA>AAA	p.E491K	KCNK10_uc001xwm.2_Missense_Mutation_p.E496K|KCNK10_uc001xwn.2_Missense_Mutation_p.E496K	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	491	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						CACATCTTTTCCGTCTCCTCC	0.502													28	44					0	0	0.001512	0	0
GPR68	8111	broad.mit.edu	37	14	91701062	91701062	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:91701062G>A	uc001xzg.2	-	2	674	c.333C>T	c.(331-333)TTC>TTT	p.F111F	GPR68_uc001xzh.2_Silent_p.F121F	NM_003485	NP_003476	Q15743	OGR1_HUMAN	G protein-coupled receptor 68	111	Helical; Name=3; (Potential).				inflammatory response	integral to plasma membrane	G-protein coupled receptor activity			kidney(1)	1		all_cancers(154;0.0555)		COAD - Colon adenocarcinoma(157;0.21)		TGCAGCAGAGGAAGCCCACGC	0.632													6	8					0	0	0.001168	0	0
CATSPERB	79820	broad.mit.edu	37	14	92159496	92159496	+	Missense_Mutation	SNP	G	A	A	rs139686935		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:92159496G>A	uc001xzs.1	-	9	945	c.805C>T	c.(805-807)CGT>TGT	p.R269C		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	269					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				GATGGATAACGAAGATCTTCA	0.323													28	49					0	0	0.001512	0	0
CHGA	1113	broad.mit.edu	37	14	93393935	93393935	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:93393935G>A	uc001ybc.3	+	4	488	c.228G>A	c.(226-228)CTG>CTA	p.L76L	CHGA_uc010aum.2_RNA|CHGA_uc001ybd.3_Silent_p.L76L	NM_001275	NP_001266	P10645	CMGA_HUMAN	chromogranin A precursor	76					regulation of blood pressure	extracellular region|stored secretory granule				skin(2)	2		all_cancers(154;0.0843)		Epithelial(152;0.102)|COAD - Colon adenocarcinoma(157;0.208)|all cancers(159;0.224)		AGAATTTACTGAAGGAGCTCC	0.453													81	146					0	0	0.003610	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912910	94912910	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:94912910C>T	uc001ydd.1	-	3	735	c.675G>A	c.(673-675)CAG>CAA	p.Q225Q		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	225					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		GCTTCTGGGTCTGGTAGCGAC	0.478													47	86					0	0	0.003610	0	0
MIR655	724025	broad.mit.edu	37	14	101515912	101515912	+	RNA	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:101515912G>A	hsa-mir-655|MI0003677	+			c.26G>A			MIR487A_hsa-mir-487a|MI0002471_5'Flank																	0						TTTGAGGAGAGGTTATCCGTG	0.458													24	54					0	0	0.004656	0	0
ADAM6	8755	broad.mit.edu	37	14	107048706	107048706	+	RNA	SNP	C	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:107048706C>G	uc010tyt.1	-	144		c.6884G>C								Parts of antibodies, mostly variable regions.												0						GTCCTCGGCTCTCAGGCTGTT	0.547													18	135					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	107062283	107062283	+	RNA	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:107062283C>T	uc010tyt.1	-	131		c.6312G>A								Parts of antibodies, mostly variable regions.												0						CCAATCCACTCCAGCCCCTTC	0.567													20	35					0	0	0.001523	0	0
ADAM6	8755	broad.mit.edu	37	14	107131067	107131067	+	RNA	SNP	C	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr14:107131067C>G	uc010tyt.1	-	63		c.3443G>C								Parts of antibodies, mostly variable regions.												0						GTCCTCAGCTCTCAGGCTGTT	0.537													6	147					0	0	0.001368	0	0
LOC646214	646214	broad.mit.edu	37	15	21938105	21938105	+	RNA	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:21938105C>T	uc010tzj.1	-	1		c.2635G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						GGCTTGTCTTCCAGTTCTCTG	0.532													26	155					0	0	0.004656	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414355	22414355	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:22414355G>A	uc001yuf.2	+	1	654	c.654G>A	c.(652-654)ATG>ATA	p.M218I		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						AAGCTTCCATGAAAAAGGTGT	0.343													12	44					0	0	0.001855	0	0
RYR3	6263	broad.mit.edu	37	15	33835867	33835867	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:33835867G>A	uc001zhi.2	+	8	761	c.691G>A	c.(691-693)GAT>AAT	p.D231N	RYR3_uc010bar.2_Missense_Mutation_p.D231N	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	231	MIR 3.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CCATGGTCATGATGAATGTTT	0.413													47	100					0	0	0.003610	0	0
C15orf55	256646	broad.mit.edu	37	15	34640773	34640774	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:34640773_34640774CC>TT	uc001zif.2	+	2	775_776	c.620_621CC>TT	c.(619-621)TCC>TTT	p.S207F	C15orf55_uc010ucc.1_Missense_Mutation_p.S235F|C15orf55_uc010ucd.1_Missense_Mutation_p.S225F	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	207						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		TCCAAAATTTCCAAGGACGTTT	0.554			T	BRD3|BRD4	lethal midline carcinoma								16	37					0	0	0.004672	0	0
FAM82A2	55177	broad.mit.edu	37	15	41029489	41029490	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:41029489_41029490GG>AA	uc001zmo.1	-	11	1418_1419	c.1274_1275CC>TT	c.(1273-1275)TCC>TTT	p.S425F	FAM82A2_uc001zmp.1_Missense_Mutation_p.S425F|FAM82A2_uc001zmq.1_Missense_Mutation_p.S425F	NM_018145	NP_060615	Q96TC7	RMD3_HUMAN	family with sequence similarity 82, member A2	425					apoptosis|cell differentiation	integral to membrane|microtubule|mitochondrial membrane|nucleus|spindle pole	protein binding				0						AGTTTACCTTGGAAATATATAC	0.386													43	98					0	0	0.004672	0	0
VPS39	23339	broad.mit.edu	37	15	42458808	42458808	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:42458808G>A	uc001zpd.2	-	16	1743	c.1592C>T	c.(1591-1593)TCC>TTC	p.S531F	VPS39_uc001zpc.2_Missense_Mutation_p.S520F|VPS39_uc001zpb.2_5'Flank	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	531					protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		TTTCAGAGGGGAGTTGGCTTT	0.547													18	36					0	0	0.001523	0	0
HDC	3067	broad.mit.edu	37	15	50544901	50544901	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:50544901G>A	uc001zxz.2	-	8	964	c.858C>T	c.(856-858)TTC>TTT	p.F286F	HDC_uc001zxy.2_Silent_p.F29F|HDC_uc010uff.1_Silent_p.F286F	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	286					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	GAAACCCCCGGAACTCGGGGC	0.562													15	29					0	0	0.004007	0	0
ZNF280D	54816	broad.mit.edu	37	15	56946417	56946417	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:56946417G>A	uc002adu.2	-	19	2409	c.2192C>T	c.(2191-2193)CCA>CTA	p.P731L	ZNF280D_uc002adv.2_Missense_Mutation_p.P718L|ZNF280D_uc010bfq.2_Missense_Mutation_p.P731L|ZNF280D_uc002adw.1_Intron|ZNF280D_uc010bfp.2_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	731					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		CTCAGAAGTTGGGATACAAAC	0.279													24	62					0	0	0.005443	0	0
KIAA0101	9768	broad.mit.edu	37	15	64673543	64673543	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:64673543G>A	uc002ank.2	-	1	160	c.28C>T	c.(28-30)CCA>TCA	p.P10S	KIAA0101_uc002anl.2_Missense_Mutation_p.P10S	NM_014736	NP_055551	Q15004	PAF_HUMAN	hypothetical protein LOC9768 isoform 1	10						mitochondrion|nucleus				central_nervous_system(1)	1						TAAGTGCCTGGAACACTGTCT	0.597													62	129					0	0	0.003610	0	0
ARID3B	10620	broad.mit.edu	37	15	74883672	74883672	+	Silent	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:74883672T>C	uc002aye.2	+	6	1263	c.1062T>C	c.(1060-1062)CTT>CTC	p.L354L	ARID3B_uc002ayd.2_Silent_p.L354L|ARID3B_uc010bjs.1_Silent_p.L59L	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	354	Interaction with RB1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						CCCCTGCCCTTCTCTCCCCAC	0.647													3	86					0	0	0.001984	0	0
KIAA1024	23251	broad.mit.edu	37	15	79760663	79760663	+	Silent	SNP	C	T	T	rs151300850	byFrequency	TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:79760663C>T	uc002bew.1	+	4	2763	c.2688C>T	c.(2686-2688)ATC>ATT	p.I896I	KIAA1024_uc010unk.1_3'UTR	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	896	Helical; (Potential).					integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						CTGCTCTGATCGCTGCTGCGG	0.458													7	14					0	0	0.004482	0	0
TMC3	342125	broad.mit.edu	37	15	81650588	81650588	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr15:81650588C>T	uc002bgo.1	-	7	645	c.645G>A	c.(643-645)AGG>AGA	p.R215R	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Silent_p.R215R	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	215	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						TCTTCCTCTCCCTGCCGTAAT	0.498													28	59					0	0	0.007291	0	0
RHOT2	89941	broad.mit.edu	37	16	723122	723122	+	Silent	SNP	C	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:723122C>G	uc002cip.2	+	18	1789	c.1722C>G	c.(1720-1722)GCC>GCG	p.A574A	RHOT2_uc002ciq.2_Silent_p.A467A|RHOT2_uc010bqy.2_Silent_p.A353A|RHBDL1_uc002cir.1_5'Flank|RHBDL1_uc010uun.1_5'Flank|RHBDL1_uc002cis.1_5'Flank	NM_138769	NP_620124	Q8IXI1	MIRO2_HUMAN	ras homolog gene family, member T2	574	Miro 2.|Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			pancreas(1)	1		Hepatocellular(780;0.0218)				CCACCATGGCCGCCTTCCCGT	0.662													10	18					0	0	0.006214	0	0
NLRC3	197358	broad.mit.edu	37	16	3607670	3607670	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:3607670C>T	uc010btn.2	-	7	2434	c.2023G>A	c.(2023-2025)GAG>AAG	p.E675K	NLRC3_uc010bto.1_5'Flank	NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	675	LRR 3.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						ATCTGGTTCTCCGCCAAGCTG	0.522													3	15					0	0	0.000248	0	0
SEPT12	124404	broad.mit.edu	37	16	4829767	4829767	+	Silent	SNP	C	T	T	rs150037821		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:4829767C>T	uc002cxq.2	-	8	888	c.747G>A	c.(745-747)GTG>GTA	p.V249V	SEPT12_uc002cxr.2_Silent_p.V203V|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	249					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						CAGCCCCTACCACGGCAAAAG	0.592													34	48					0	0	0.002836	0	0
ACSM2A	123876	broad.mit.edu	37	16	20497934	20497934	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:20497934G>A	uc010bwe.2	+	15	1907	c.1668G>A	c.(1666-1668)GGG>GGA	p.G556G	ACSM2A_uc002dhf.3_Silent_p.G556G|ACSM2A_uc002dhg.3_Silent_p.G556G|ACSM2A_uc010vay.1_Silent_p.G477G|ACSM2A_uc002dhh.3_Silent_p.G186G|uc002dhi.1_5'Flank	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	556					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						CTGTCACAGGGAAAATTCAAC	0.473													53	115					0	0	0.003610	0	0
DNAH3	55567	broad.mit.edu	37	16	20999096	20999096	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:20999096C>T	uc010vbe.1	-	46	6801	c.6801G>A	c.(6799-6801)TCG>TCA	p.S2267S	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2267	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AATGTGACTTCGAGGGAGTTG	0.493													21	40					0	0	0.003330	0	0
CHP2	63928	broad.mit.edu	37	16	23767468	23767468	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:23767468C>T	uc002dmb.1	+	4	729	c.306C>T	c.(304-306)GAC>GAT	p.D102D		NM_022097	NP_071380	O43745	CHP2_HUMAN	hepatocellular carcinoma antigen gene 520	102	EF-hand 2.						calcium ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(48;0.0144)		AAACCCAAGACCCCAAGAAAC	0.522													18	20					0	0	0.001216	0	0
HSD3B7	80270	broad.mit.edu	37	16	30997842	30997842	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:30997842C>T	uc002eaf.2	+	4	527	c.421C>T	c.(421-423)CCC>TCC	p.P141S	HSD3B7_uc010cac.2_Missense_Mutation_p.P141S|HSD3B7_uc002eag.2_Missense_Mutation_p.P141S|HSD3B7_uc002eah.2_Missense_Mutation_p.P141S	NM_025193	NP_079469	Q9H2F3	3BHS7_HUMAN	hydroxy-delta-5-steroid dehydrogenase, 3 beta-	141					bile acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity				0						CAAAGGTCACCCCTTCTACAG	0.572													14	31					0	0	0.001855	0	0
SALL1	6299	broad.mit.edu	37	16	51172857	51172857	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:51172857G>A	uc010vgs.1	-	2	3307	c.3276C>T	c.(3274-3276)TTC>TTT	p.F1092F	SALL1_uc010vgr.1_Silent_p.F995F|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1092					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AAACATGCACGAAGCCGTTGA	0.567													22	50					0	0	0.002780	0	0
CIAPIN1	57019	broad.mit.edu	37	16	57470617	57470617	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:57470617G>A	uc002ell.1	-	4	509	c.338C>T	c.(337-339)TCT>TTT	p.S113F	CIAPIN1_uc002elk.1_RNA|CIAPIN1_uc002elm.1_Missense_Mutation_p.S100F|CIAPIN1_uc002eln.1_Missense_Mutation_p.S113F|CIAPIN1_uc010cda.1_Missense_Mutation_p.S113F|CIAPIN1_uc002elo.1_Intron|CIAPIN1_uc010vhm.1_Missense_Mutation_p.S113F	NM_020313	NP_064709	Q6FI81	CPIN1_HUMAN	cytokine induced apoptosis inhibitor 1	113					anti-apoptosis|apoptosis	cytoplasm|nucleolus					0						ACACAGCTTAGATGCTGTCTT	0.388													18	29					0	0	0.007413	0	0
GFOD2	81577	broad.mit.edu	37	16	67709904	67709904	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:67709904G>A	uc002eub.2	-	3	607	c.312C>T	c.(310-312)TTC>TTT	p.F104F	GFOD2_uc002eua.1_RNA|GFOD2_uc002euc.2_5'UTR	NM_030819	NP_110446	Q3B7J2	GFOD2_HUMAN	glucose-fructose oxidoreductase domain	104						proteinaceous extracellular matrix	binding|oxidoreductase activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0151)|Epithelial(162;0.0505)|all cancers(182;0.242)		TCACCATCCGGAAGGCATCCA	0.522													12	24					0	0	0.001368	0	0
AARS	16	broad.mit.edu	37	16	70288564	70288564	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:70288564G>A	uc002eyn.1	-	17	2470	c.2360C>T	c.(2359-2361)CCA>CTA	p.P787L	EXOSC6_uc002eym.1_5'Flank|AARS_uc010vlu.1_Missense_Mutation_p.P617L	NM_001605	NP_001596	P49588	SYAC_HUMAN	alanyl-tRNA synthetase	787					alanyl-tRNA aminoacylation|tRNA processing	cytosol|soluble fraction	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			pancreas(1)	1		Ovarian(137;0.0365)		BRCA - Breast invasive adenocarcinoma(221;0.161)	L-Alanine(DB00160)	ATCCTTGTTTGGAGCAGTCTG	0.582													24	39					0	0	0.007291	0	0
HYDIN	54768	broad.mit.edu	37	16	70889118	70889118	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:70889118G>A	uc002ezr.2	-	73	12481	c.12353C>T	c.(12352-12354)TCC>TTC	p.S4118F	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4119										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTCCTGGAAGGAAAAATCGAA	0.527													30	14					0	0	0.004878	0	0
HYDIN	54768	broad.mit.edu	37	16	71103256	71103256	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:71103256C>T	uc002ezr.2	-	14	2016	c.1888G>A	c.(1888-1890)GAA>AAA	p.E630K	HYDIN_uc010cfz.1_Missense_Mutation_p.E375K|HYDIN_uc002ezv.2_Missense_Mutation_p.E630K|HYDIN_uc010vmc.1_Missense_Mutation_p.E647K|HYDIN_uc010vmd.1_Missense_Mutation_p.E657K|HYDIN_uc002ezw.3_Missense_Mutation_p.E647K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	630										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GATATTTCTTCCTTGGTCCAA	0.468													28	74					0	0	0.002836	0	0
CHST6	4166	broad.mit.edu	37	16	75513562	75513562	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:75513562G>A	uc002fef.2	-	3	345	c.165C>T	c.(163-165)TTC>TTT	p.F55F	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Silent_p.F55F	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	55	PAPS (By similarity).|Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						GTTGGCCCACGAAGGACGAGC	0.682													9	14					0	0	0.000673	0	0
ACSF3	197322	broad.mit.edu	37	16	89180872	89180872	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:89180872T>C	uc002fmp.2	+	6	1443	c.1103T>C	c.(1102-1104)CTG>CCG	p.L368P	ACSF3_uc010cig.1_Missense_Mutation_p.L368P|ACSF3_uc010cih.1_Missense_Mutation_p.L103P|ACSF3_uc002fmq.1_Intron|ACSF3_uc010cii.1_RNA|ACSF3_uc002fmr.1_Missense_Mutation_p.L103P	NM_174917	NP_777577	Q4G176	ACSF3_HUMAN	acyl-CoA synthetase family member 3 precursor	368					fatty acid metabolic process	mitochondrion	acid-thiol ligase activity|ATP binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0281)		TCCGGGCCCCTGACCACTGCC	0.647													24	44					0	0	0.006320	0	0
ANKRD11	29123	broad.mit.edu	37	16	89347137	89347138	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr16:89347137_89347138GG>AT	uc002fmx.1	-	9	6273_6274	c.5812_5813CC>AT	c.(5812-5814)CCC>ATC	p.P1938I	ANKRD11_uc002fmy.1_Missense_Mutation_p.P1938I|ANKRD11_uc002fnc.1_Missense_Mutation_p.P1938I|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.P1895I	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1938	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GGCGCTGAAGGGACCCTCGTCC	0.698													19	40					0	0	0.004672	0	0
MYO1C	4641	broad.mit.edu	37	17	1371284	1371284	+	Missense_Mutation	SNP	G	A	A	rs151000341		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:1371284G>A	uc002fsp.2	-	28	3114	c.2894C>T	c.(2893-2895)ACC>ATC	p.T965I	MYO1C_uc002fsn.2_Missense_Mutation_p.T946I|MYO1C_uc002fso.2_Missense_Mutation_p.T930I|MYO1C_uc010vqj.1_Missense_Mutation_p.T930I	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	965					mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TGGCTGACCGGTCAGGTTGGC	0.637													27	39					0	0	0.005443	0	0
METT10D	79066	broad.mit.edu	37	17	2323843	2323843	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:2323843G>A	uc002fut.2	-	10	1258	c.1110C>T	c.(1108-1110)TTC>TTT	p.F370F	METT10D_uc002fuu.3_RNA|METT10D_uc010cka.2_RNA|METT10D_uc002fuv.2_Intron|METT10D_uc010vqx.1_RNA|METT10D_uc010vqy.1_Silent_p.F152F	NM_024086	NP_076991	Q86W50	MET16_HUMAN	methyltransferase 10 domain containing	370							methyltransferase activity				0						TGGCCGTTAGGAAAAGGCTGA	0.468													32	61					0	0	0.002836	0	0
OR3A4	390756	broad.mit.edu	37	17	3214032	3214032	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:3214032T>G	uc002fvi.2	+	1	494	c.428T>G	c.(427-429)ATC>AGC	p.I143S		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						AGCTGGGGAATCCAGCAAGCC	0.562													33	72					0	0	0.002096	0	0
ATP2A3	489	broad.mit.edu	37	17	3844928	3844928	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:3844928G>A	uc002fxb.1	-	13	1717	c.1566C>T	c.(1564-1566)ATC>ATT	p.I522I	ATP2A3_uc002fwx.1_Silent_p.I522I|ATP2A3_uc002fwy.1_Silent_p.I522I|ATP2A3_uc002fwz.1_Silent_p.I522I|ATP2A3_uc002fxa.1_Silent_p.I522I|ATP2A3_uc002fxc.1_Silent_p.I522I|ATP2A3_uc002fxd.1_Silent_p.I522I	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	522	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		TACAGCGCTCGATCACACTCT	0.622													19	29					0	0	0.006122	0	0
DNAH2	146754	broad.mit.edu	37	17	7671322	7671322	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:7671322G>A	uc002giu.1	+	22	3794	c.3780G>A	c.(3778-3780)ATG>ATA	p.M1260I		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1260	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CGGAAACCATGGAGACCACGG	0.577													22	26					0	0	0.001882	0	0
CHD3	1107	broad.mit.edu	37	17	7806015	7806015	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:7806015C>T	uc002gje.2	+	21	3490	c.3340C>T	c.(3340-3342)CTG>TTG	p.L1114L	CHD3_uc002gjd.2_Silent_p.L1173L|CHD3_uc002gjf.2_Silent_p.L1114L|CHD3_uc002gjh.2_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1114	Helicase C-terminal.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CACGGGTGCCCTGAGGCAGGA	0.522													28	38					0	0	0.005443	0	0
PER1	5187	broad.mit.edu	37	17	8052955	8052955	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:8052955G>A	uc002gkd.2	-	6	916	c.678C>T	c.(676-678)TTC>TTT	p.F226F	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Silent_p.F210F|PER1_uc010vus.1_Silent_p.F226F	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	226	PAS 1.				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						GGCCCGTCAGGAAGGAGACAG	0.612			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					54	66					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10356643	10356643	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:10356643C>T	uc002gmn.2	-	24	3048	c.2937G>A	c.(2935-2937)GTG>GTA	p.V979V	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	979	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGAGGTTTTTCACCTTTAGAT	0.438													44	87					0	0	0.003610	0	0
MYH3	4621	broad.mit.edu	37	17	10538768	10538768	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:10538768G>A	uc002gmq.1	-	29	4165	c.4088C>T	c.(4087-4089)TCC>TTC	p.S1363F		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1363	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						ATTGGCCTTGGACAGCGCCCT	0.612													56	107					0	0	0.003610	0	0
MYOCD	93649	broad.mit.edu	37	17	12639597	12639597	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:12639597C>T	uc002gnn.2	+	6	834	c.535C>T	c.(535-537)CCG>TCG	p.P179S	MYOCD_uc002gno.2_Missense_Mutation_p.P179S|MYOCD_uc002gnp.1_Missense_Mutation_p.P83S	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	179	HDAC5-binding (By similarity).				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AGCGGGATCCCCGCCAGACGC	0.493													24	65					0	0	0.003954	0	0
MYOCD	93649	broad.mit.edu	37	17	12649390	12649390	+	Splice_Site	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:12649390G>A	uc002gnn.2	+	9	1424	c.1125_splice	c.e9+1	p.K375_splice	MYOCD_uc002gno.2_Splice_Site_p.K375_splice|MYOCD_uc002gnp.1_Splice_Site_p.K279_splice|MYOCD_uc002gnq.2_Splice_Site_p.K94_splice	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2						cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TGATCTGAAGGTATAGGATTT	0.408													22	47					0	0	0.002299	0	0
RAI1	10743	broad.mit.edu	37	17	17700192	17700193	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:17700192_17700193CC>TT	uc002grm.2	+	3	4399_4400	c.3930_3931CC>TT	c.(3928-3933)TTCCAG>TTTTAG	p.Q1311*	RAI1_uc002grn.1_Nonsense_Mutation_p.Q1311*	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1311						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GGGCAGCCTTCCAGGGGGCCAT	0.649													62	61					0	0	0.004672	0	0
TMEM11	8834	broad.mit.edu	37	17	21102044	21102045	+	Nonsense_Mutation	DNP	TG	GT	GT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:21102044_21102045TG>GT	uc002gyp.2	-	2	614_615	c.171_172CA>AC	c.(169-174)TACAAG>TAACAG	p.57_58YK>*Q	TMEM11_uc002gyq.2_3'UTR	NM_003876	NP_003867	P17152	TMM11_HUMAN	transmembrane protein 11	57_58					mitochondrion organization	integral to mitochondrial inner membrane|integral to plasma membrane	protein binding				0						ACAATGTACTTGTACTGGGCTT	0.589													12	41					0	0	0.004672	0	0
KSR1	8844	broad.mit.edu	37	17	25924400	25924400	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:25924400C>T	uc010crg.2	+	10	1440	c.995C>T	c.(994-996)TCC>TTC	p.S332F	KSR1_uc002gzj.1_RNA|KSR1_uc002gzm.2_Missense_Mutation_p.S133F	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	467					Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		TCCAACCCATCCAGCGCCACC	0.622													13	13					0	0	0.001855	0	0
RAB11FIP4	84440	broad.mit.edu	37	17	29758914	29758914	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:29758914G>A	uc002hgn.1	+	2	472	c.243G>A	c.(241-243)ATG>ATA	p.M81I		NM_032932	NP_116321	Q86YS3	RFIP4_HUMAN	RAB11 family interacting protein 4 (class II)	81	EF-hand.				cytokinesis|interspecies interaction between organisms|protein transport	cleavage furrow|endocytic vesicle|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding			skin(1)	1		all_cancers(10;3.62e-13)|all_epithelial(10;0.000387)|all_lung(9;0.0132)|Breast(31;0.014)|all_hematologic(16;0.015)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0259)|Ovarian(249;0.0423)|Lung NSC(157;0.066)				TGTTCGCCATGAAAGGTGAGG	0.582													17	57					0	0	0.004007	0	0
GPR179	440435	broad.mit.edu	37	17	36498979	36498979	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:36498979G>A	uc002hpz.2	-	1	715	c.694C>T	c.(694-696)CCT>TCT	p.P232S		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	232	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TCCAGGAAAGGAGGAGACAGC	0.602													43	51					0	0	0.006999	0	0
KRT13	3860	broad.mit.edu	37	17	39661430	39661430	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:39661430G>A	uc002hwu.1	-	1	436	c.373C>T	c.(373-375)CTG>TTG	p.L125L	KRT13_uc002hwv.1_Silent_p.L125L|KRT13_uc002hww.2_Silent_p.L18L|KRT13_uc010wfr.1_Silent_p.L18L|KRT13_uc010cxo.2_Silent_p.L125L|KRT13_uc002hwx.1_Silent_p.L113L	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	125	Coil 1A.|Rod.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				GCCTCCTCCAGGGCGCGCACC	0.542													49	56					0	0	0.003610	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40839817	40839817	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:40839817C>T	uc002iay.2	+	8	1340	c.1124C>T	c.(1123-1125)CCC>CTC	p.P375L	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	375	Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		GTTCAAGTGCCCGGTTTCCCA	0.622													23	64					0	0	0.002780	0	0
MPP3	4356	broad.mit.edu	37	17	41903166	41903166	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:41903166G>A	uc002iei.3	-	9	733	c.567C>T	c.(565-567)ATC>ATT	p.I189I	MPP3_uc002ieh.2_Silent_p.I214I|MPP3_uc002iej.2_RNA|MPP3_uc010czi.1_Silent_p.I189I|MPP3_uc010wik.1_Silent_p.I214I	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	189	PDZ.				signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		GCAGGACTGCGATCCCGTTCA	0.602													12	42					0	0	0.003163	0	0
DBF4B	80174	broad.mit.edu	37	17	42828618	42828618	+	Silent	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:42828618T>C	uc002ihf.2	+	14	2058	c.1845T>C	c.(1843-1845)GGT>GGC	p.G615G	DBF4B_uc010wjc.1_Intron	NM_145663	NP_663696	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B isoform 1	615					cell cycle	nucleus	nucleic acid binding|zinc ion binding				0		Prostate(33;0.0322)				TAGACTCAGGTTAGAGGTGAA	0.552													29	32					0	0	0.006320	0	0
BZRAP1	9256	broad.mit.edu	37	17	56387372	56387372	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:56387372G>A	uc002ivx.3	-	21	4718	c.3847C>T	c.(3847-3849)CAG>TAG	p.Q1283*	BZRAP1_uc010dcs.2_Nonsense_Mutation_p.Q1223*|BZRAP1_uc010wnt.1_Nonsense_Mutation_p.Q1283*	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1283						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ACCTGCTTCTGGAAGGAGCAA	0.502													41	36					0	0	0.002852	0	0
SCN4A	6329	broad.mit.edu	37	17	62022955	62022955	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:62022955T>C	uc002jds.1	-	19	3562	c.3485A>G	c.(3484-3486)AAT>AGT	p.N1162S		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1162	III.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	AAGCAGCACATTCATGATGGA	0.582													83	182					0	0	0.003610	0	0
ABCA8	10351	broad.mit.edu	37	17	66902222	66902222	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:66902222G>A	uc002jhp.2	-	17	2420	c.2241C>T	c.(2239-2241)TTC>TTT	p.F747F	ABCA8_uc002jhq.2_Silent_p.F787F|ABCA8_uc010wqq.1_Silent_p.F787F|ABCA8_uc010wqr.1_Silent_p.F726F|ABCA8_uc002jhr.2_Silent_p.F787F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	747						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					CTAGCTTCAGGAATACTTCAT	0.308													39	100					0	0	0.007835	0	0
SLC39A11	201266	broad.mit.edu	37	17	70644980	70644980	+	Silent	SNP	G	A	A	rs146713017		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:70644980G>A	uc002jjb.2	-	9	1027	c.912C>T	c.(910-912)TAC>TAT	p.Y304Y	SLC39A11_uc002jja.2_Silent_p.Y297Y	NM_001159770	NP_001153242	Q8N1S5	S39AB_HUMAN	solute carrier family 39, member 11 isoform 1	304	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)	1						CCATGACCACGTAGACCATGG	0.642													16	15					0	0	0.004990	0	0
SSTR2	6752	broad.mit.edu	37	17	71165665	71165665	+	Silent	SNP	C	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:71165665C>A	uc002jje.2	+	2	567	c.207C>A	c.(205-207)CTC>CTA	p.L69L		NM_001050	NP_001041	P30874	SSR2_HUMAN	somatostatin receptor 2	69	Cytoplasmic (Potential).				digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity				0			LUSC - Lung squamous cell carcinoma(166;0.197)			ATGTCATCCTCCGCTATGCCA	0.473													54	74					2.14255e-21	3.5433e-21	0.003610	1	0
SDK2	54549	broad.mit.edu	37	17	71410896	71410896	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:71410896G>A	uc010dfm.2	-	18	2371	c.2371C>T	c.(2371-2373)CCC>TCC	p.P791S	SDK2_uc010dfn.2_Missense_Mutation_p.P470S	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	791	Fibronectin type-III 3.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GGGACCGTGGGAACTAGAGGA	0.612													14	30					0	0	0.004007	0	0
GPR142	350383	broad.mit.edu	37	17	72368424	72368424	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:72368424C>T	uc010wqy.1	+	4	1074	c.1074C>T	c.(1072-1074)ATC>ATT	p.I358I	GPR142_uc010wqx.1_Silent_p.I270I	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	358	Helical; Name=6; (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GCACAGCCATCCTCCTGGGCA	0.662													43	24					0	0	0.002522	0	0
EVPL	2125	broad.mit.edu	37	17	74004881	74004881	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:74004881C>T	uc002jqi.2	-	22	4633	c.4405G>A	c.(4405-4407)GAG>AAG	p.E1469K	EVPL_uc010wss.1_Missense_Mutation_p.E1491K|EVPL_uc010wst.1_Missense_Mutation_p.E939K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1469	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGGTCCTTCTCCAGCTTGACC	0.612													72	73					0	0	0.003610	0	0
ARL16	339231	broad.mit.edu	37	17	79650840	79650840	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:79650840C>T	uc002kbf.2	-	1	115	c.16G>A	c.(16-18)GGG>AGG	p.G6R	ARL16_uc002kbe.2_5'Flank|HGS_uc010wus.1_5'Flank|HGS_uc002kbg.2_5'Flank	NM_001040025	NP_001035114	Q0P5N6	ARL16_HUMAN	ADP-ribosylation factor-like 16	6							GTP binding				0	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			AAGGCCCGCCCACCGGCCACT	0.637													14	18					0	0	0.004007	0	0
C18orf45	85019	broad.mit.edu	37	18	20936574	20936574	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr18:20936574C>T	uc002kuf.2	-	12	764	c.655G>A	c.(655-657)GGT>AGT	p.G219S	C18orf45_uc010xaq.1_RNA|C18orf45_uc010xar.1_RNA|C18orf45_uc002kug.2_RNA|C18orf45_uc002kuh.2_RNA	NM_032933	NP_116322	Q24JQ0	CR045_HUMAN	hypothetical protein LOC85019	219	Helical; (Potential).					integral to membrane					0	all_cancers(21;0.000238)|all_epithelial(16;5.29e-06)|Lung NSC(20;0.00925)|Colorectal(14;0.0202)|all_lung(20;0.0255)|Ovarian(20;0.127)					CAGCAGCTACCATGGAATCTG	0.502													12	31					0	0	0.002450	0	0
MIR924	100126323	broad.mit.edu	37	18	37202092	37202092	+	RNA	SNP	A	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr18:37202092A>T	hsa-mir-924|MI0005716	-			c.48A>T			LOC647946_uc010xcj.1_Intron|LOC647946_uc002lal.1_Intron																	0						AATCAGTTgtagactctaggt	0.139													23	49					0	0	0.003954	0	0
MYO5B	4645	broad.mit.edu	37	18	47421481	47421481	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr18:47421481C>T	uc002leb.2	-	22	3163	c.2875G>A	c.(2875-2877)GTA>ATA	p.V959I	MYO5B_uc002lea.2_Missense_Mutation_p.V100I	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	959	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		AGCCGCTCTACCTCCATGGTG	0.552													24	55					0	0	0.004656	0	0
DCC	1630	broad.mit.edu	37	18	50734082	50734082	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr18:50734082G>A	uc002lfe.1	+	11	2343	c.1756G>A	c.(1756-1758)GAA>AAA	p.E586K	DCC_uc010xdr.1_Missense_Mutation_p.E434K|DCC_uc010dpf.1_Missense_Mutation_p.E241K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	586	Extracellular (Potential).|Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TTATAAACTGGAAGGCCTGAA	0.378													32	50					0	0	0.002096	0	0
CDH7	1005	broad.mit.edu	37	18	63477219	63477219	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr18:63477219G>A	uc002ljz.2	+	3	815	c.490G>A	c.(490-492)GAA>AAA	p.E164K	CDH7_uc002lka.2_Missense_Mutation_p.E164K|CDH7_uc002lkb.2_Missense_Mutation_p.E164K	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	164	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				AGGAGTTCCCGAAATGTCTCC	0.428													41	74					0	0	0.003610	0	0
NETO1	81832	broad.mit.edu	37	18	70526090	70526090	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr18:70526090C>T	uc002lkw.2	-	4	724	c.440G>A	c.(439-441)GGA>GAA	p.G147E	NETO1_uc002lkx.1_Missense_Mutation_p.G146E|NETO1_uc002lky.1_Missense_Mutation_p.G147E|NETO1_uc002lkz.2_Missense_Mutation_p.G146E	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	147	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		AGCTGAAAATCCCATAGATTC	0.328													20	43					0	0	0.001882	0	0
C18orf62	284274	broad.mit.edu	37	18	73130764	73130764	+	Silent	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr18:73130764T>C	uc002lma.1	-	2	308	c.237A>G	c.(235-237)AAA>AAG	p.K79K	C18orf62_uc010dqw.1_Intron|C18orf62_uc002lmb.1_RNA	NM_001037331	NP_001032408	Q3B7S5	CR062_HUMAN	hypothetical protein LOC284274	79						integral to membrane					0		Esophageal squamous(42;0.131)|Prostate(75;0.155)		OV - Ovarian serous cystadenocarcinoma(15;6.21e-06)		tgttggcccttttccagtctt	0.109													37	66					0	0	0.002222	0	0
HCN2	610	broad.mit.edu	37	19	603592	603592	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:603592C>T	uc002lpe.2	+	2	734	c.681C>T	c.(679-681)ATC>ATT	p.I227I		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	227	Helical; Name=Segment S1; (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAAACCTCATCATCATCCCAG	0.602													22	28					0	0	0.002299	0	0
HCN2	610	broad.mit.edu	37	19	615813	615813	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:615813T>G	uc002lpe.2	+	8	2062	c.2009T>G	c.(2008-2010)CTC>CGC	p.L670R		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	670	Cytoplasmic (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AATTCCATCCTCCTGCACAAG	0.607													8	36					0	0	0.004482	0	0
TMIGD2	126259	broad.mit.edu	37	19	4292670	4292670	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:4292670C>T	uc002lzx.1	-	5	821	c.775G>A	c.(775-777)GTC>ATC	p.V259I	TMIGD2_uc010dtv.1_Missense_Mutation_p.V255I	NM_144615	NP_653216	Q96BF3	TMIG2_HUMAN	transmembrane and immunoglobulin domain	259	Pro-rich.|Cytoplasmic (Potential).					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGACCCTGACCATAGAGACG	0.502													33	61					0	0	0.001786	0	0
TICAM1	148022	broad.mit.edu	37	19	4816401	4816401	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:4816401G>A	uc002mbi.2	-	2	2240	c.1989C>T	c.(1987-1989)TTC>TTT	p.F663F		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	663	Sufficient to induce apoptosis.|Pro-rich.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		AGGCCGTAGGGAAGGCTGGGG	0.667													13	36					0	0	0.001855	0	0
ARRDC5	645432	broad.mit.edu	37	19	4902794	4902794	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:4902794C>T	uc002mbm.2	-	1	86	c.86G>A	c.(85-87)AGA>AAA	p.R29K		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	29					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		CAGGTAGATTCTATCCTCGGG	0.557													26	64					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9060196	9060196	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:9060196C>T	uc002mkp.2	-	3	27454	c.27250G>A	c.(27250-27252)GGT>AGT	p.G9084S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9086	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAGGAGAACCTGTTTGGGTG	0.473													39	61					0	0	0.002222	0	0
MUC16	94025	broad.mit.edu	37	19	9072100	9072100	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:9072100C>T	uc002mkp.2	-	3	15550	c.15346G>A	c.(15346-15348)GAA>AAA	p.E5116K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5118	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAAAAATTTCCTTTGTGTCT	0.443													42	79					0	0	0.006999	0	0
ZNF799	90576	broad.mit.edu	37	19	12501446	12501446	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:12501446T>C	uc010dyt.2	-	4	1916	c.1766A>G	c.(1765-1767)GAA>GGA	p.E589G	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	589	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCCTTACATTCATACGGGTT	0.413													3	71					0	0	0.004672	0	0
TRMT1	55621	broad.mit.edu	37	19	13227162	13227162	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:13227162G>A	uc002mwj.2	-	1	302	c.52C>T	c.(52-54)CTC>TTC	p.L18F	NACC1_uc002mwm.2_5'Flank|TRMT1_uc002mwk.2_Missense_Mutation_p.L18F|TRMT1_uc002mwl.3_Missense_Mutation_p.L18F|TRMT1_uc010xmz.1_5'UTR	NM_017722	NP_060192	Q9NXH9	TRM1_HUMAN	tRNA methyltransferase 1 isoform 1	18							RNA binding|tRNA (guanine-N2-)-methyltransferase activity|zinc ion binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.08e-22)	GBM - Glioblastoma multiforme(1328;0.0356)		GCTCTAGAGAGCACCCGGGCG	0.647													26	41					0	0	0.004656	0	0
F2RL3	9002	broad.mit.edu	37	19	17001310	17001310	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:17001310G>A	uc002nfa.2	+	2	1211	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K		NM_003950	NP_003941	Q96RI0	PAR4_HUMAN	coagulation factor II (thrombin) receptor-like 3	346	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation|positive regulation of release of sequestered calcium ion into cytosol	extracellular region|integral to plasma membrane	thrombin receptor activity				0						CGTGTCGGCCGAGTTCAGGGA	0.672													12	14					0	0	0.000978	0	0
UNC13A	23025	broad.mit.edu	37	19	17743613	17743614	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:17743613_17743614CC>TT	uc002nhd.2	-	28	3669_3670	c.3669_3670GG>AA	c.(3667-3672)AAGGAC>AAAAAC	p.D1224N		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1136	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GGCACGCGGTCCTTGAAGGCGG	0.49													27	54					0	0	0.004672	0	0
TMEM59L	25789	broad.mit.edu	37	19	18729233	18729233	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:18729233C>T	uc002njy.3	+	7	918	c.831C>T	c.(829-831)TCC>TCT	p.S277S		NM_012109	NP_036241	Q9UK28	TM59L_HUMAN	brain-specific membrane-anchored protein	277	Helical; (Potential).					Golgi membrane|integral to membrane|membrane fraction				ovary(2)|skin(2)	4						TCTTCCTCTCCGTGCTGGTGA	0.697													6	15					0	0	0.001168	0	0
RFXANK	8625	broad.mit.edu	37	19	19304881	19304881	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:19304881C>T	uc002nls.2	+	3	631	c.126C>T	c.(124-126)CTC>CTT	p.L42L	LOC729991-MEF2B_uc010xqp.1_5'Flank|LOC729991-MEF2B_uc002nlo.2_5'Flank|LOC729991-MEF2B_uc002nlp.2_5'Flank|LOC729991_uc002nlq.2_5'Flank|LOC729991_uc002nlr.3_5'Flank|LOC729991-MEF2B_uc010ecb.2_5'Flank|RFXANK_uc002nlt.2_Silent_p.L42L|RFXANK_uc002nlu.2_Silent_p.L42L|RFXANK_uc002nlv.2_Silent_p.L42L|RFXANK_uc002nlw.2_Silent_p.L42L	NM_003721	NP_003712	O14593	RFXK_HUMAN	regulatory factor X-associated	42						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(2)	2			Epithelial(12;0.00228)			TCCTCAGTCTCTTTCCCTGCA	0.587													38	61					0	0	0.006230	0	0
ZNF99	7652	broad.mit.edu	37	19	22939486	22939486	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:22939486T>G	uc010xrh.1	-	7	2685	c.2685A>C	c.(2683-2685)AAA>AAC	p.K895N		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGTTAAAACCTTTGCCACATT	0.363													16	31					0	0	0.004007	0	0
UBA2	10054	broad.mit.edu	37	19	34921554	34921554	+	Nonsense_Mutation	SNP	C	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:34921554C>G	uc002nvk.2	+	2	282	c.212C>G	c.(211-213)TCA>TGA	p.S71*	UBA2_uc010xrx.1_Intron|UBA2_uc002nvl.2_Translation_Start_Site	NM_005499	NP_005490	Q9UBT2	SAE2_HUMAN	SUMO-1 activating enzyme subunit 2	71					protein sumoylation	nucleus	ATP binding|enzyme activator activity|ligase activity|metal ion binding|protein heterodimerization activity|SUMO activating enzyme activity			ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			GTTGGAAGATCAAAGGCACAG	0.348													6	81					0	0	0.001984	0	0
UPK1A	11045	broad.mit.edu	37	19	36159518	36159518	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:36159518G>A	uc002oaw.2	+	2	247	c.247G>A	c.(247-249)GGT>AGT	p.G83S	UPK1A_uc010eeh.2_Missense_Mutation_p.G83S|uc002oax.1_Missense_Mutation_p.P10L	NM_007000	NP_008931	O00322	UPK1A_HUMAN	uroplakin 1A	83	Helical; (Potential).				epithelial cell differentiation|protein oligomerization	endoplasmic reticulum|integral to membrane	monosaccharide binding|protein homodimerization activity				0	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TTTTGGTGTGGGTGCCGCACT	0.587													11	10					0	0	0.000673	0	0
APLP1	333	broad.mit.edu	37	19	36369000	36369000	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:36369000C>T	uc002oce.2	+	13	1704	c.1566C>T	c.(1564-1566)ACC>ACT	p.T522T	APLP1_uc010xsz.1_Silent_p.T483T|APLP1_uc002ocf.2_Silent_p.T523T|APLP1_uc002ocg.2_Silent_p.T426T|APLP1_uc010xta.1_Silent_p.T516T	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	522	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCCCCATGACCCTTCCAAAAG	0.532													68	121					0	0	0.003610	0	0
ZFP82	284406	broad.mit.edu	37	19	36884104	36884104	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:36884104G>A	uc002ody.1	-	5	1373	c.1138C>T	c.(1138-1140)CAT>TAT	p.H380Y		NM_133466	NP_597723	Q8N141	ZFP82_HUMAN	zinc finger protein 82 homolog	380	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						AGAATAAGATGATAACCACGG	0.393													33	53					0	0	0.002836	0	0
ZFP30	22835	broad.mit.edu	37	19	38127133	38127133	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:38127133C>T	uc002ogv.1	-	6	825	c.309G>A	c.(307-309)TGG>TGA	p.W103*	ZFP30_uc002ogw.1_Nonsense_Mutation_p.W103*|ZFP30_uc002ogx.1_Nonsense_Mutation_p.W103*|ZFP30_uc010xtt.1_Nonsense_Mutation_p.W102*	NM_014898	NP_055713	Q9Y2G7	ZFP30_HUMAN	zinc finger protein 30 homolog	103					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CCATTACCTTCCACTGAGATA	0.343													15	38					0	0	0.002450	0	0
LGALS4	3960	broad.mit.edu	37	19	39303139	39303140	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:39303139_39303140GG>AA	uc002ojg.2	-	2	279_280	c.65_66CC>TT	c.(64-66)CCC>CTT	p.P22L	LGALS4_uc010xuj.1_Missense_Mutation_p.P22L	NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	22	Galectin 1.				cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			CGCCCGGGATGGGCTGGTAGTA	0.619													15	36					0	0	0.004672	0	0
CLC	1178	broad.mit.edu	37	19	40222125	40222125	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:40222125G>A	uc002omh.2	-	4	400	c.324C>T	c.(322-324)TCC>TCT	p.S108S		NM_001828	NP_001819	Q05315	LPPL_HUMAN	Charcot-Leyden crystal protein	108	Galectin.				lipid catabolic process|multicellular organismal development		carboxylesterase activity|lysophospholipase activity|sugar binding				0	all_cancers(60;2.99e-06)|all_lung(34;4.7e-08)|Lung NSC(34;5.46e-08)|Ovarian(47;0.06)	Renal(1328;0.000147)|Hepatocellular(1079;0.0202)|Myeloproliferative disorder(2;0.0255)	Epithelial(26;6.43e-25)|OV - Ovarian serous cystadenocarcinoma(5;1.07e-24)|all cancers(26;8.38e-23)	GBM - Glioblastoma multiforme(1328;4.97e-06)|STAD - Stomach adenocarcinoma(1328;0.00655)		AGGTGTAAGAGGATTGGCCAT	0.403													64	111					0	0	0.003610	0	0
MAP3K10	4294	broad.mit.edu	37	19	40719064	40719064	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:40719064C>T	uc002ona.2	+	8	2094	c.1806C>T	c.(1804-1806)ATC>ATT	p.I602I	MAP3K10_uc002onb.2_5'UTR	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	602					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						ACACACCCATCGCCCCTGGCT	0.627													5	7					0	0	0.001984	0	0
CYP2S1	29785	broad.mit.edu	37	19	41707228	41707228	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:41707228C>T	uc002opw.2	+	6	982	c.927C>T	c.(925-927)ACC>ACT	p.T309T	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Silent_p.T34T	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	309					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						CGGTCAGCACCACGGTCGGCT	0.488													40	87					0	0	0.003610	0	0
AXL	558	broad.mit.edu	37	19	41748886	41748886	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:41748886C>T	uc010ehj.2	+	11	1601	c.1411C>T	c.(1411-1413)CTT>TTT	p.L471F	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.L471F|AXL_uc010ehk.2_Missense_Mutation_p.L462F	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	471	Helical; (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GGCTCTCTTCCTTGTCCACCG	0.597													20	40					0	0	0.007413	0	0
CEACAM6	4680	broad.mit.edu	37	19	42260627	42260627	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:42260627C>T	uc002orm.2	+	2	333	c.184C>T	c.(184-186)CGT>TGT	p.R62C		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	62	Ig-like V-type.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		GCCCCAGAATCGTATTGGTTA	0.512													58	93					0	0	0.003610	0	0
ZNF526	116115	broad.mit.edu	37	19	42729578	42729578	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:42729578C>T	uc002osz.1	+	3	1179	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F		NM_133444	NP_597701	Q8TF50	ZN526_HUMAN	zinc finger protein 526	341	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0704)				CCAAGGTCTTCAAGAAAGCAG	0.607													22	21					0	0	0.002299	0	0
CCDC61	729440	broad.mit.edu	37	19	46498700	46498700	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:46498700C>T	uc002pdw.2	+	2	98	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		AACGCCGGATCCTGGGGCGGG	0.622													9	10					0	0	0.001855	0	0
SULT2B1	6820	broad.mit.edu	37	19	49100031	49100031	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:49100031C>T	uc002pjl.2	+	6	762	c.681C>T	c.(679-681)TTC>TTT	p.F227F	SULT2B1_uc002pjm.2_Silent_p.F212F	NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	227	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		TCTGTGGGTTCCTGGGCCGTC	0.652													4	20					0	0	0.000602	0	0
SPHK2	56848	broad.mit.edu	37	19	49132013	49132013	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:49132013G>A	uc002pjr.2	+	7	1314	c.948G>A	c.(946-948)CTG>CTA	p.L316L	SPHK2_uc010xzt.1_Silent_p.L257L|SPHK2_uc002pjs.2_Silent_p.L316L|SPHK2_uc002pjt.2_Silent_p.L110L|SPHK2_uc002pju.2_Intron|SPHK2_uc002pjv.2_Silent_p.L280L|SPHK2_uc002pjw.2_Silent_p.L378L	NM_020126	NP_064511	Q9NRA0	SPHK2_HUMAN	sphingosine kinase 2	316	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cell proliferation|sphinganine-1-phosphate biosynthetic process	cytosol|lysosomal membrane|membrane fraction	ATP binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|Ras GTPase binding|sphinganine kinase activity			lung(1)	1		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GCCACCCACTGGACCTGCTCT	0.627													32	56					0	0	0.002096	0	0
RASIP1	54922	broad.mit.edu	37	19	49227675	49227675	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:49227675C>T	uc002pki.2	-	10	2660	c.2463G>A	c.(2461-2463)CTG>CTA	p.L821L	RASIP1_uc002pkh.2_Silent_p.L82L	NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	821	Dilute.				signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		CAATGTCGCCCAGCCCAGCTC	0.577													25	47					0	0	0.003330	0	0
TRPM4	54795	broad.mit.edu	37	19	49686006	49686006	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:49686006C>T	uc002pmw.2	+	11	1507	c.1435C>T	c.(1435-1437)CAG>TAG	p.Q479*	TRPM4_uc010emu.2_Nonsense_Mutation_p.Q479*|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Nonsense_Mutation_p.Q305*|TRPM4_uc010emv.2_Nonsense_Mutation_p.Q364*|TRPM4_uc010yal.1_Nonsense_Mutation_p.Q125*|TRPM4_uc002pmy.2_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	479	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CCTTTTGGACCAGGCGTCCCA	0.677													15	23					0	0	0.003163	0	0
KLK10	5655	broad.mit.edu	37	19	51518136	51518136	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:51518136C>T	uc002puy.2	-	6	832	c.751G>A	c.(751-753)GGC>AGC	p.G251S	KLK10_uc002puz.2_Missense_Mutation_p.G251S|KLK10_uc002pva.2_Missense_Mutation_p.G251S	NM_145888	NP_665895	O43240	KLK10_HUMAN	kallikrein-related peptidase 10 preproprotein	251	Peptidase S1.				cell cycle|proteolysis	extracellular region	serine-type endopeptidase activity			lung(2)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		TGGGCAGAGCCACAGGGGTAA	0.557													33	50					0	0	0.006230	0	0
IGLON5	402665	broad.mit.edu	37	19	51832013	51832013	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:51832013G>A	uc002pwc.2	+	8	1011	c.1011G>A	c.(1009-1011)TAG>TAA	p.*337*		NM_001101372	NP_001094842	A6NGN9	IGLO5_HUMAN	IgLON family member 5 precursor	337						extracellular region					0						GGAGAATGTAGGCGCAACCCA	0.682													3	4					0	0	0.000248	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51958927	51958927	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:51958927C>T	uc002pwt.2	-	4	863	c.796G>A	c.(796-798)GGA>AGA	p.G266R	SIGLEC8_uc010yda.1_Missense_Mutation_p.G157R|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.G173R	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	266	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GAGCCATTTCCCAGGGCTGTG	0.363													17	35					0	0	0.007413	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51960830	51960830	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:51960830G>A	uc002pwt.2	-	2	685	c.618C>T	c.(616-618)TCC>TCT	p.S206S	SIGLEC8_uc010yda.1_Intron|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Intron	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	206	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TGAGCACTGAGGAGCGGGCAG	0.657													21	21					0	0	0.001882	0	0
ZNF677	342926	broad.mit.edu	37	19	53740523	53740523	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:53740523G>A	uc002qbf.1	-	5	1642	c.1457C>T	c.(1456-1458)CCT>CTT	p.P486L	ZNF677_uc002qbg.1_Missense_Mutation_p.P486L	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	486					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		ACATTTGTAAGGTTTCTCTCC	0.363													27	52					0	0	0.007291	0	0
LILRA2	11027	broad.mit.edu	37	19	55086385	55086385	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:55086385C>T	uc002qgg.3	+	4	629	c.540C>T	c.(538-540)TTC>TTT	p.F180F	LILRA2_uc010ern.2_Silent_p.F180F|LILRA2_uc002qgf.2_Silent_p.F180F|LILRA2_uc010yfe.1_Silent_p.F180F|LILRA2_uc010yff.1_Silent_p.F168F|LILRA2_uc010ero.2_Silent_p.F168F|LILRA2_uc010yfg.1_Silent_p.F180F	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	180	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GGGCCATCTTCTCCGTGGGCC	0.567													43	87					0	0	0.007835	0	0
EPN1	29924	broad.mit.edu	37	19	56203261	56203261	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:56203261C>T	uc002qlw.2	+	7	1246	c.904C>T	c.(904-906)CCT>TCT	p.P302S	EPN1_uc002qlv.2_Missense_Mutation_p.P277S|EPN1_uc010etd.2_Missense_Mutation_p.P302S|EPN1_uc002qlx.2_Missense_Mutation_p.P388S	NM_001130072	NP_001123544	Q9Y6I3	EPN1_HUMAN	epsin 1 isoform b	302	Ala/Gly/Pro-rich.|8 X 3 AA repeats of [ED]-P-W.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding				0		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		CCCCCCTGTCCCTCCAGCTGC	0.751													6	15					0	0	0.001984	0	0
NLRP4	147945	broad.mit.edu	37	19	56369317	56369317	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:56369317C>T	uc002qmd.3	+	3	980	c.558C>T	c.(556-558)TTC>TTT	p.F186F	NLRP4_uc002qmf.2_Silent_p.F111F|NLRP4_uc010etf.2_Silent_p.F17F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	186	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TGTACACGTTCTATTTCTGCT	0.502													34	82					0	0	0.003755	0	0
NLRP4	147945	broad.mit.edu	37	19	56369483	56369483	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:56369483G>A	uc002qmd.3	+	3	1146	c.724G>A	c.(724-726)GAA>AAA	p.E242K	NLRP4_uc002qmf.2_Missense_Mutation_p.E167K|NLRP4_uc010etf.2_Missense_Mutation_p.E73K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	242	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CGGCTTGAACGAACCCGATTC	0.572													29	85					0	0	0.002445	0	0
NLRP4	147945	broad.mit.edu	37	19	56369851	56369851	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:56369851C>T	uc002qmd.3	+	3	1514	c.1092C>T	c.(1090-1092)ACC>ACT	p.T364T	NLRP4_uc002qmf.2_Silent_p.T289T|NLRP4_uc010etf.2_Silent_p.T195T	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	364	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TGGCCCTGACCTGCCAGAGCA	0.547													16	36					0	0	0.003163	0	0
NLRP5	126206	broad.mit.edu	37	19	56539800	56539800	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:56539800G>C	uc002qmj.2	+	7	2201	c.2201G>C	c.(2200-2202)CGG>CCG	p.R734P	NLRP5_uc002qmi.2_Missense_Mutation_p.R715P	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	734	LRR 2.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CCGTATTTGCGGAAAATTCGG	0.507													64	126					0	0	0.003610	0	0
ZNF324	25799	broad.mit.edu	37	19	58983100	58983100	+	Missense_Mutation	SNP	A	G	G	rs1048481		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr19:58983100A>G	uc002qsw.1	+	4	1335	c.1241A>G	c.(1240-1242)AAG>AGG	p.K414R	ZNF324_uc002qsx.1_Missense_Mutation_p.K191R	NM_014347	NP_055162	O75467	Z324A_HUMAN	zinc finger protein 324	414	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		TCGCTCTTTAAGCACCAGCGC	0.652													8	25					0	0	0.004482	0	0
APOB	338	broad.mit.edu	37	2	21230280	21230280	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:21230280C>T	uc002red.2	-	26	9588	c.9460G>A	c.(9460-9462)GAA>AAA	p.E3154K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3154					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCTGTTTTTTCCCATAGAGAG	0.348													328	337					0	0	0.003610	0	0
C2orf28	51374	broad.mit.edu	37	2	27439735	27439735	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:27439735C>T	uc002rjf.2	+	7	947	c.774C>T	c.(772-774)TTC>TTT	p.F258F	C2orf28_uc002rjg.2_Silent_p.F145F|C2orf28_uc002rjh.2_RNA|CAD_uc002rji.2_5'Flank|CAD_uc010eyw.2_5'Flank	NM_080592	NP_542159	Q6UW56	APR3_HUMAN	apoptosis related protein 3 isoform b	203	Helical; (Potential).					integral to membrane|plasma membrane				skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGCTTATGTTCTTCGGGATTC	0.498													58	63					0	0	0.003610	0	0
SPDYA	245711	broad.mit.edu	37	2	29063268	29063269	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:29063268_29063269GG>AA	uc002rmj.2	+	7	989_990	c.783_784GG>AA	c.(781-786)CAGGAC>CAAAAC	p.D262N	SPDYA_uc002rmi.2_Missense_Mutation_p.D262N|SPDYA_uc002rmk.2_Missense_Mutation_p.D262N|SPDYA_uc002rml.2_Missense_Mutation_p.D262N	NM_182756	NP_877433	Q5MJ70	SPDYA_HUMAN	speedy homolog A isoform 1	262					G1/S transition of mitotic cell cycle|multicellular organismal development|positive regulation of cell proliferation|response to DNA damage stimulus	nucleus	protein kinase binding			upper_aerodigestive_tract(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					AACATTCTCAGGACTCATACAA	0.366													30	35					0	0	0.004672	0	0
SLC8A1	6546	broad.mit.edu	37	2	40366635	40366635	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:40366635G>A	uc002rrx.2	-	9	2475	c.2451C>T	c.(2449-2451)TTC>TTT	p.F817F	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Silent_p.F812F|SLC8A1_uc002rrz.2_Silent_p.F804F|SLC8A1_uc002rsa.2_Silent_p.F781F|SLC8A1_uc002rsd.3_Silent_p.F781F	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	817	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GGTCTCCAATGAAAGCTGTCA	0.517													12	49					0	0	0.001855	0	0
TTC7A	57217	broad.mit.edu	37	2	47205993	47205993	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:47205993C>T	uc002rvo.2	+	5	1079	c.711C>T	c.(709-711)ACC>ACT	p.T237T	TTC7A_uc002rvm.2_Silent_p.T203T|TTC7A_uc002rvn.1_Silent_p.T118T|TTC7A_uc010fbb.2_Silent_p.T237T|TTC7A_uc010fbc.2_5'UTR|TTC7A_uc002rvp.2_Silent_p.T118T|TTC7A_uc002rvq.2_5'UTR	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	237							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			ATGAGCTCACCTACTTCCTGG	0.527													15	29					0	0	0.004990	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48807854	48807854	+	Missense_Mutation	SNP	C	T	T	rs144911860		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:48807854C>T	uc010yol.1	+	1	129	c.82C>T	c.(82-84)CCT>TCT	p.P28S	STON1_uc002rwo.3_Missense_Mutation_p.P28S|STON1_uc010fbm.2_Missense_Mutation_p.P28S|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.P28S|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.P28S	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	28					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex		p.P28S(2)		ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AAAGAATTTTCCTCTGGAGAA	0.473													18	50					0	0	0.007413	0	0
FSHR	2492	broad.mit.edu	37	2	49190127	49190127	+	Silent	SNP	C	T	T	rs146663905		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:49190127C>T	uc002rww.2	-	10	1907	c.1833G>A	c.(1831-1833)CTG>CTA	p.L611L	FSHR_uc002rwx.2_Silent_p.L549L|FSHR_uc010fbn.2_Silent_p.L585L	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	611	Helical; Name=7; (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GAAACAGAACCAGCAGAATCT	0.478									Gonadal_Dysgenesis_46_XX				18	44					0	0	0.001523	0	0
MEIS1	4211	broad.mit.edu	37	2	66739376	66739376	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:66739376C>T	uc002sdu.2	+	8	1295	c.838C>T	c.(838-840)CCC>TCC	p.P280S	MEIS1_uc002sdt.2_Missense_Mutation_p.P280S|MEIS1_uc002sdv.2_Missense_Mutation_p.P278S|MEIS1_uc010yqh.1_Intron|MEIS1_uc010yqi.1_Missense_Mutation_p.P215S|MEIS1_uc002sdw.1_Missense_Mutation_p.P136S	NM_002398	NP_002389	O00470	MEIS1_HUMAN	Meis homeobox 1	280	Homeobox; TALE-type.						sequence-specific DNA binding transcription factor activity				0						TGGCATCTTTCCCAAAGTAGC	0.443													12	10					0	0	0.000978	0	0
PROKR1	10887	broad.mit.edu	37	2	68882249	68882249	+	Silent	SNP	C	T	T	rs146411193		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:68882249C>T	uc010yqj.1	+	2	723	c.723C>T	c.(721-723)TTC>TTT	p.F241F	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	241	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						GCATAGAATTCGTGGGCCCCG	0.547													44	58					0	0	0.002522	0	0
VAX2	25806	broad.mit.edu	37	2	71160159	71160159	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:71160159C>T	uc002shh.2	+	3	730	c.698C>T	c.(697-699)TCC>TTC	p.S233F	ATP6V1B1_uc002shi.1_5'Flank|ATP6V1B1_uc002shj.2_5'Flank|ATP6V1B1_uc010fdv.2_5'Flank|ATP6V1B1_uc010fdw.2_5'Flank	NM_012476	NP_036608	Q9UIW0	VAX2_HUMAN	ventral anterior homeobox 2	233					ectoderm development|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AACCCGCTGTCCTCGGCCTCA	0.692													8	18					0	0	0.003080	0	0
DYSF	8291	broad.mit.edu	37	2	71891477	71891477	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:71891477G>A	uc002sie.2	+	45	5342	c.4966G>A	c.(4966-4968)GAC>AAC	p.D1656N	DYSF_uc010feg.2_Missense_Mutation_p.D1687N|DYSF_uc010feh.2_Missense_Mutation_p.D1663N|DYSF_uc002sig.3_Missense_Mutation_p.D1642N|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.D1677N|DYSF_uc010fef.2_Missense_Mutation_p.D1694N|DYSF_uc010fei.2_Missense_Mutation_p.D1673N|DYSF_uc010fek.2_Missense_Mutation_p.D1674N|DYSF_uc010fej.2_Missense_Mutation_p.D1664N|DYSF_uc010fel.2_Missense_Mutation_p.D1643N|DYSF_uc010feo.2_Missense_Mutation_p.D1688N|DYSF_uc010fem.2_Missense_Mutation_p.D1678N|DYSF_uc010fen.2_Missense_Mutation_p.D1695N|DYSF_uc002sif.2_Missense_Mutation_p.D1657N|DYSF_uc010yqy.1_Missense_Mutation_p.D537N|DYSF_uc010yqz.1_Missense_Mutation_p.D417N	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1656	Cytoplasmic (Potential).|C2 5.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CCTCTCCAAGGACGAAAAGAT	0.557													25	51					0	0	0.003330	0	0
REG3A	5068	broad.mit.edu	37	2	79384759	79384759	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:79384759C>T	uc002sod.1	-	4	654	c.399G>A	c.(397-399)TGG>TGA	p.W133*	REG3A_uc002soe.1_Nonsense_Mutation_p.W133*|REG3A_uc002sof.1_Nonsense_Mutation_p.W133*	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	133	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						GATTTCTCTCCCATGCAAAGT	0.537													33	65					0	0	0.003271	0	0
TMEM131	23505	broad.mit.edu	37	2	98377312	98377313	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:98377312_98377313CC>TT	uc002syh.3	-	37	5183_5184	c.4954_4955GG>AA	c.(4954-4956)GGC>AAC	p.G1652N	TMEM131_uc002syg.2_Missense_Mutation_p.G32N	NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1652						integral to membrane				ovary(4)|central_nervous_system(2)	6						GCCGTTCTTGCCCGGGAGCGAG	0.53													44	46					0	0	0.004672	0	0
SLC9A4	389015	broad.mit.edu	37	2	103120032	103120032	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:103120032C>T	uc002tbz.3	+	3	1303	c.846C>T	c.(844-846)ATC>ATT	p.I282I		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	282	Helical; Name=H/M6; (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TGTTTGGCATCGTTTTTGGAT	0.398													27	30					0	0	0.001512	0	0
SLC9A2	6549	broad.mit.edu	37	2	103318936	103318936	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:103318936G>A	uc002tca.2	+	9	1962	c.1820G>A	c.(1819-1821)AGA>AAA	p.R607K		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	607	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						CTCTTATCAAGAAATCTCTAT	0.338													43	51					0	0	0.002522	0	0
THSD7B	80731	broad.mit.edu	37	2	138375985	138375985	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:138375985G>A	uc002tva.1	+	18	3502	c.3502G>A	c.(3502-3504)GAA>AAA	p.E1168K	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCAGCTGAGTGAAAACGCACC	0.507													16	28					0	0	0.004990	0	0
LYPD6B	130576	broad.mit.edu	37	2	150069603	150069603	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:150069603C>T	uc002twv.1	+	6	827	c.426C>T	c.(424-426)GTC>GTT	p.V142V	LYPD6B_uc002tww.1_Silent_p.V104V|LYPD6B_uc002twx.1_Silent_p.V104V	NM_177964	NP_808879	Q8NI32	LPD6B_HUMAN	LY6/PLAUR domain containing 6B	118	UPAR/Ly6.					anchored to membrane|plasma membrane					0						GTCATTTTGTCGGTTGCCACC	0.433													68	74					0	0	0.003610	0	0
PLA2R1	22925	broad.mit.edu	37	2	160824067	160824067	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:160824067G>A	uc002ube.1	-	20	3094	c.2887C>T	c.(2887-2889)CTA>TTA	p.L963L	PLA2R1_uc010zcp.1_Silent_p.L963L|PLA2R1_uc002ubf.2_Silent_p.L963L	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	963	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TTAAAATATAGCCATCCTTTG	0.343													41	73					0	0	0.003610	0	0
FAP	2191	broad.mit.edu	37	2	163045640	163045640	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:163045640G>A	uc002ucd.2	-	19	1800	c.1592C>T	c.(1591-1593)TCA>TTA	p.S531L	FAP_uc010fpc.2_Missense_Mutation_p.S80L|FAP_uc010zct.1_Missense_Mutation_p.S506L|FAP_uc010fpd.2_Missense_Mutation_p.S10L	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	531	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						ATACTTCTTTGATCTGTCAAA	0.294													30	41					0	0	0.002445	0	0
KCNH7	90134	broad.mit.edu	37	2	163360984	163360984	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:163360984C>T	uc002uch.1	-	6	1309	c.1097G>A	c.(1096-1098)CGA>CAA	p.R366Q	KCNH7_uc002uci.2_Missense_Mutation_p.R359Q	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	366	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	ATTGTGTGTTCGATCTTTAAC	0.373													48	85					0	0	0.003610	0	0
SCN3A	6328	broad.mit.edu	37	2	166012399	166012399	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:166012399C>T	uc002ucx.2	-	10	1538	c.1046G>A	c.(1045-1047)GGA>GAA	p.G349E	SCN3A_uc002ucy.2_Missense_Mutation_p.G349E|SCN3A_uc002ucz.2_Missense_Mutation_p.G349E|SCN3A_uc002uda.1_Missense_Mutation_p.G218E|SCN3A_uc002udb.1_Missense_Mutation_p.G218E	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	349						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	ACAGATGTATCCTTCTGGACA	0.408													28	78					0	0	0.002096	0	0
SCN2A	6326	broad.mit.edu	37	2	166168556	166168556	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:166168556G>A	uc002udc.2	+	8	1282	c.992G>A	c.(991-993)GGG>GAG	p.G331E	SCN2A_uc002udd.2_Missense_Mutation_p.G331E|SCN2A_uc002ude.2_Missense_Mutation_p.G331E	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	331	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TTTTTAGAGGGGCAAAATGAT	0.408													10	21					0	0	0.000673	0	0
SCN9A	6335	broad.mit.edu	37	2	167055717	167055717	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:167055717G>A	uc010fpl.2	-	27	5740	c.5399C>T	c.(5398-5400)CCT>CTT	p.P1800L	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1811						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GAGAAGAGGAGGATCCAGGGC	0.458													39	101					0	0	0.001951	0	0
XIRP2	129446	broad.mit.edu	37	2	168074745	168074745	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:168074745G>A	uc002udx.2	+	4	811	c.793G>A	c.(793-795)GAA>AAA	p.E265K	XIRP2_uc010fpn.2_Missense_Mutation_p.E298K|XIRP2_uc010fpo.2_Missense_Mutation_p.E265K|XIRP2_uc010fpp.2_Missense_Mutation_p.E265K|XIRP2_uc002udy.2_Missense_Mutation_p.E90K|XIRP2_uc010fpq.2_Missense_Mutation_p.E43K|XIRP2_uc010fpr.2_Missense_Mutation_p.E43K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	90					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATTTGAGGACGAAATTACTTC	0.398													22	61					0	0	0.001882	0	0
G6PC2	57818	broad.mit.edu	37	2	169764539	169764539	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:169764539C>T	uc002uem.2	+	5	1110	c.1018C>T	c.(1018-1020)CCC>TCC	p.P340S	G6PC2_uc002uen.2_3'UTR|G6PC2_uc010fpv.2_Missense_Mutation_p.P224S	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	340	Cytoplasmic (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						TGCTTTCATTCCCTACTCTGT	0.433													39	88					0	0	0.006230	0	0
TTN	7273	broad.mit.edu	37	2	179611763	179611763	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:179611763C>T	uc002unb.2	-	46	15588	c.15364G>A	c.(15364-15366)GGA>AGA	p.G5122R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGGTCCTCCAGTAGGAATA	0.468													49	59					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179613608	179613608	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:179613608G>A	uc002unb.2	-	46	13743	c.13519C>T	c.(13519-13521)CTA>TTA	p.L4507L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGCATTTAGATTGCTTGAT	0.328													26	63					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179634535	179634535	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:179634535C>T	uc010zfg.1	-	37	8997	c.8773G>A	c.(8773-8775)GAA>AAA	p.E2925K	TTN_uc010zfh.1_Missense_Mutation_p.E2879K|TTN_uc010zfi.1_Missense_Mutation_p.E2879K|TTN_uc010zfj.1_Missense_Mutation_p.E2879K|TTN_uc002unb.2_Missense_Mutation_p.E2925K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2925							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGAACTTTTCACTCATCTCA	0.468													71	156					0	0	0.003610	0	0
ZNF385B	151126	broad.mit.edu	37	2	180308074	180308074	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:180308074G>A	uc002unn.3	-	10	1923	c.1319C>T	c.(1318-1320)TCG>TTG	p.S440L	ZNF385B_uc002unj.2_Missense_Mutation_p.S338L|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Missense_Mutation_p.S337L|ZNF385B_uc002unm.2_Missense_Mutation_p.S364L	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	440						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			CTGGAAGAGCGAGGCAGAGGG	0.642													17	26					0	0	0.004990	0	0
TFPI	7035	broad.mit.edu	37	2	188361661	188361661	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:188361661C>T	uc002upx.2	-	3	299	c.266G>A	c.(265-267)GGA>GAA	p.G89E	TFPI_uc002upy.2_Missense_Mutation_p.G89E|TFPI_uc002upz.2_Missense_Mutation_p.G85E|TFPI_uc002uqa.2_Missense_Mutation_p.G89E|TFPI_uc002uqb.2_Missense_Mutation_p.G89E	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	89	BPTI/Kunitz inhibitor 1.				blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	ATTCTGATTTCCTTCACATCC	0.388													19	54					0	0	0.001882	0	0
COL3A1	1281	broad.mit.edu	37	2	189855743	189855743	+	Missense_Mutation	SNP	G	A	A	rs112185887	byFrequency	TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:189855743G>A	uc002uqj.1	+	11	929	c.812G>A	c.(811-813)CGA>CAA	p.R271Q	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	271	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TTCGATGGACGAAATGGAGAA	0.279													79	83					0	0	0.003610	0	0
MYO1B	4430	broad.mit.edu	37	2	192141644	192141644	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:192141644C>T	uc010fsg.2	+	2	278	c.23C>T	c.(22-24)ACC>ATC	p.T8I	MYO1B_uc002usq.2_Missense_Mutation_p.T8I|MYO1B_uc002usr.2_Missense_Mutation_p.T8I|MYO1B_uc002uss.1_Missense_Mutation_p.T8I	NM_001130158	NP_001123630	O43795	MYO1B_HUMAN	myosin IB isoform 1	8						myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(5)|large_intestine(2)|ovary(1)	8			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.104)|all cancers(119;0.236)			GAGGTGAAAACCTCACTTCTG	0.433													51	46					0	0	0.003610	0	0
DNAH7	56171	broad.mit.edu	37	2	196786857	196786857	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:196786857T>A	uc002utj.3	-	24	3991	c.3890A>T	c.(3889-3891)AAT>ATT	p.N1297I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1297	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CCTAGGGGAATTACCCAGATA	0.338													12	25					0	0	0.003163	0	0
ADAM23	8745	broad.mit.edu	37	2	207426990	207426990	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:207426990C>T	uc002vbq.2	+	13	1541	c.1318C>T	c.(1318-1320)CAA>TAA	p.Q440*	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	440	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		CCTTGGAATCCAATGGGAACC	0.418													65	160					0	0	0.003610	0	0
CPO	130749	broad.mit.edu	37	2	207814409	207814409	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:207814409C>T	uc002vby.2	+	2	183	c.137C>T	c.(136-138)TCC>TTC	p.S46F		NM_173077	NP_775100	Q8IVL8	CBPO_HUMAN	carboxypeptidase O precursor	46					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				LUSC - Lung squamous cell carcinoma(261;0.0744)|Epithelial(149;0.0807)|Lung(261;0.142)		GAGACGTATTCCTATAACATA	0.478													15	64					0	0	0.004990	0	0
ABCA12	26154	broad.mit.edu	37	2	215901740	215901740	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:215901740C>A	uc002vew.2	-	8	1142	c.922G>T	c.(922-924)GGT>TGT	p.G308C	ABCA12_uc010zjn.1_Translation_Start_Site	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	308					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GTTCTGAAACCTTCGTTAGTT	0.413													46	55					1.83081e-24	3.03333e-24	0.003610	1	0
XRCC5	7520	broad.mit.edu	37	2	217006013	217006013	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:217006013C>T	uc002vfy.2	+	13	1587	c.1447C>T	c.(1447-1449)CCA>TCA	p.P483S	XRCC5_uc002vfz.2_Missense_Mutation_p.P369S	NM_021141	NP_066964	P13010	XRCC5_HUMAN	ATP-dependent DNA helicase II	483	Pro-rich.				double-strand break repair via nonhomologous end joining|initiation of viral infection|negative regulation of transcription, DNA-dependent|provirus integration|telomere maintenance|transcription, DNA-dependent	Ku70:Ku80 complex|nonhomologous end joining complex|nuclear telomere cap complex|nucleoplasm	ATP binding|ATP-dependent DNA helicase activity|double-stranded DNA binding|protein C-terminus binding|telomeric DNA binding|transcription regulatory region DNA binding			lung(1)|kidney(1)	2		Renal(323;0.0328)		Epithelial(149;9.78e-06)|all cancers(144;0.000632)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.0117)		CACCAAAATCCCAAATCCTCG	0.383								Direct_reversal_of_damage|NHEJ					20	51					0	0	0.001882	0	0
TUBA4B	80086	broad.mit.edu	37	2	220136262	220136262	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:220136262G>A	uc002vkv.1	+	4	732	c.567G>A	c.(565-567)GTG>GTA	p.V189V	TUBA4B_uc002vku.2_RNA	NR_003063				RecName: Full=Putative tubulin-like protein alpha-4B; AltName: Full=Alpha-tubulin 4B;												0						CCCTCAATGTGGACCTGACAG	0.537													18	35					0	0	0.007413	0	0
SCG2	7857	broad.mit.edu	37	2	224463209	224463209	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:224463209C>T	uc002vnm.2	-	2	925	c.792G>A	c.(790-792)GAG>GAA	p.E264E		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	264					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGTCTCTCACCTCTTCCTGGG	0.433													101	121					0	0	0.003610	0	0
ARMC9	80210	broad.mit.edu	37	2	232141433	232141433	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:232141433C>T	uc002vrq.3	+	15	1531	c.1419C>T	c.(1417-1419)GAC>GAT	p.D473D	ARMC9_uc002vrp.3_Silent_p.D473D|ARMC9_uc002vrr.1_RNA	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	473							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		GCCTGTCTGACTACACGCTGG	0.572													39	78					0	0	0.007835	0	0
ECEL1	9427	broad.mit.edu	37	2	233349193	233349193	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:233349193G>A	uc002vsv.2	-	6	1378	c.1173C>T	c.(1171-1173)TCC>TCT	p.S391S	ECEL1_uc010fya.1_Silent_p.S391S|ECEL1_uc010fyb.1_Silent_p.S98S	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	391	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GGTGGGGTGTGGAGCGGATGA	0.592													81	99					0	0	0.003610	0	0
MLPH	79083	broad.mit.edu	37	2	238449122	238449122	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr2:238449122G>T	uc002vwt.2	+	10	1463	c.1236G>T	c.(1234-1236)AAG>AAT	p.K412N	MLPH_uc002vws.2_Missense_Mutation_p.K269N|MLPH_uc010fyt.1_Missense_Mutation_p.K384N|MLPH_uc002vwu.2_Missense_Mutation_p.K384N|MLPH_uc002vwv.2_Missense_Mutation_p.K344N|MLPH_uc002vww.2_Missense_Mutation_p.K360N|MLPH_uc002vwx.2_Missense_Mutation_p.K268N|MLPH_uc010fyu.2_Missense_Mutation_p.K164N	NM_024101	NP_077006	Q9BV36	MELPH_HUMAN	melanophilin isoform 1	412	Potential.						metal ion binding	p.K412N(1)		ovary(1)	1		Breast(86;0.000381)|Renal(207;0.000966)|Ovarian(221;0.0695)|all_hematologic(139;0.095)|all_lung(227;0.17)|Melanoma(123;0.203)		Epithelial(121;1.17e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.02e-10)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.15e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000439)|Lung(119;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0316)		AGGACGAAAAGGCAGAGCCCA	0.612													15	14					1.05317e-09	1.72267e-09	0.002450	1	0
FASTKD5	60493	broad.mit.edu	37	20	3128650	3128650	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:3128650A>G	uc002whz.2	-	2	1378	c.1067T>C	c.(1066-1068)TTA>TCA	p.L356S	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	356					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						AATATTCACTAAGGAGCGACT	0.413													58	36					0	0	0.003610	0	0
RASSF2	9770	broad.mit.edu	37	20	4768870	4768870	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:4768870C>T	uc002wld.2	-	8	738	c.684G>A	c.(682-684)ACG>ACA	p.T228T	RASSF2_uc002wlc.2_RNA|RASSF2_uc002wle.2_RNA|RASSF2_uc002wlf.2_Silent_p.T228T|RASSF2_uc010gbh.2_5'Flank	NM_170774	NP_739580	P50749	RASF2_HUMAN	Ras association domain family 2	228	Ras-associating.				cell cycle|signal transduction	nucleus	protein binding			ovary(3)|lung(2)|large_intestine(1)	6						TACCACCACTCGTATGGACCA	0.378													25	94					0	0	0.002445	0	0
OVOL2	58495	broad.mit.edu	37	20	18022346	18022346	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:18022346C>T	uc002wqi.1	-	3	586	c.343G>A	c.(343-345)GAC>AAC	p.D115N		NM_021220	NP_067043	Q9BRP0	OVOL2_HUMAN	zinc finger protein 339	115					negative regulation of keratinocyte differentiation|negative regulation of Notch signaling pathway|negative regulation of transcription by competitive promoter binding|regulation of cell cycle|regulation of keratinocyte proliferation|transcription, DNA-dependent	nucleus	DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1						ACCACCGAGTCGCTGCACGTG	0.612													26	23					0	0	0.006320	0	0
XRN2	22803	broad.mit.edu	37	20	21369916	21369916	+	Nonsense_Mutation	SNP	T	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:21369916T>G	uc002wsf.1	+	30	2888	c.2793T>G	c.(2791-2793)TAT>TAG	p.Y931*	XRN2_uc002wsg.1_Nonsense_Mutation_p.Y855*|XRN2_uc010zsk.1_Nonsense_Mutation_p.Y877*|XRN2_uc002wsh.1_Nonsense_Mutation_p.Y69*	NM_012255	NP_036387	Q9H0D6	XRN2_HUMAN	5'-3' exoribonuclease 2	931					cell growth|DNA catabolic process, exonucleolytic|mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|spermatogenesis|transcription termination, DNA-dependent	nucleolus	5'-3' exoribonuclease activity|nucleic acid binding|protein binding|zinc ion binding			skin(1)	1						TTCAGGGATATCCCAGAGAAG	0.368													3	37					0	0	0.000248	0	0
VSX1	30813	broad.mit.edu	37	20	25057171	25057171	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:25057171G>A	uc002wuf.2	-	5	859	c.824C>T	c.(823-825)TCC>TTC	p.S275F	VSX1_uc002wue.2_Intron|VSX1_uc010gdd.1_Intron|VSX1_uc010gde.1_Intron|VSX1_uc010gdf.1_Intron	NM_014588	NP_055403	Q9NZR4	VSX1_HUMAN	visual system homeobox 1 isoform a	275	CVC.				response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CATCCCCATGGATTTTTTATG	0.338													67	54					0	0	0.003610	0	0
TTLL9	164395	broad.mit.edu	37	20	30507728	30507728	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:30507728G>A	uc010gdx.1	+	7	819	c.566G>A	c.(565-567)TGG>TAG	p.W189*	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_Intron|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Intron|TTLL9_uc010ztp.1_Intron|TTLL9_uc010ztq.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	189	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			ATCGTGGACTGGAGGAAGGTG	0.602													50	40					0	0	0.003610	0	0
TRPC4AP	26133	broad.mit.edu	37	20	33596548	33596548	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:33596548C>A	uc002xbk.2	-	13	1548	c.1514G>T	c.(1513-1515)AGT>ATT	p.S505I	TRPC4AP_uc002xbj.2_5'Flank|TRPC4AP_uc010zuq.1_Missense_Mutation_p.S96I|TRPC4AP_uc002xbl.2_Missense_Mutation_p.S497I|TRPC4AP_uc010zur.1_Missense_Mutation_p.S466I|TRPC4AP_uc002xbm.1_Missense_Mutation_p.S505I	NM_015638	NP_056453	Q8TEL6	TP4AP_HUMAN	TRPC4-associated protein isoform a	505					protein ubiquitination|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00936)			ACACACCAAACTCCTGAAATA	0.517													28	112					5.45727e-16	8.99198e-16	0.001512	1	0
ERGIC3	51614	broad.mit.edu	37	20	34136575	34136575	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:34136575C>T	uc002xct.2	+	7	711	c.642C>T	c.(640-642)TTC>TTT	p.F214F	ERGIC3_uc002xcr.1_Silent_p.F214F|ERGIC3_uc010zvg.1_Silent_p.F214F|ERGIC3_uc002xcs.2_Silent_p.F214F|ERGIC3_uc002xcu.2_Silent_p.F214F|ERGIC3_uc002xcv.2_Silent_p.F177F	NM_015966	NP_057050	Q9Y282	ERGI3_HUMAN	serologically defined breast cancer antigen 84	214	Lumenal (Potential).				vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane	protein binding			large_intestine(2)|ovary(1)	3	Lung NSC(9;0.00489)|all_lung(11;0.00729)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			CCGGAAACTTCCACTTTGCCC	0.562													96	53					0	0	0.003610	0	0
SAMHD1	25939	broad.mit.edu	37	20	35563580	35563580	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:35563580G>A	uc002xgh.1	-	4	491	c.361C>T	c.(361-363)CCT>TCT	p.P121S		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	121					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				CCATGGATAGGATCATTAATT	0.383													14	64					0	0	0.001855	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47611094	47611094	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:47611094G>C	uc002xtx.3	+	22	3232	c.3080G>C	c.(3079-3081)GGC>GCC	p.G1027A	ARFGEF2_uc010zyf.1_Missense_Mutation_p.G320A	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1027					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			AGCCTGAAGGGCCACACATTG	0.562													9	56					0	0	0.004482	0	0
KCNB1	3745	broad.mit.edu	37	20	47991437	47991437	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:47991437G>A	uc002xur.1	-	2	824	c.660C>T	c.(658-660)TTC>TTT	p.F220F	KCNB1_uc002xus.1_Silent_p.F220F	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	220					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TGGACTGGCCGAACTCATCGA	0.577													19	58					0	0	0.001523	0	0
TPD52L2	7165	broad.mit.edu	37	20	62520563	62520563	+	Missense_Mutation	SNP	C	T	T	rs150777439		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr20:62520563C>T	uc002yhc.2	+	6	626	c.497C>T	c.(496-498)TCG>TTG	p.S166L	TPD52L2_uc002ygy.2_Missense_Mutation_p.S189L|TPD52L2_uc002ygz.2_Missense_Mutation_p.S180L|TPD52L2_uc002yha.2_Missense_Mutation_p.S169L|TPD52L2_uc002yhb.2_Missense_Mutation_p.S160L|TPD52L2_uc002yhd.2_Missense_Mutation_p.S146L|TPD52L2_uc011abk.1_Missense_Mutation_p.S117L|TPD52L2_uc011abl.1_Missense_Mutation_p.S123L|TPD52L2_uc002yhe.2_Missense_Mutation_p.S65L	NM_003288	NP_003279	O43399	TPD54_HUMAN	tumor protein D52-like 2 isoform e	166					regulation of cell proliferation	perinuclear region of cytoplasm	protein binding|protein homodimerization activity	p.S189L(1)		ovary(1)|skin(1)	2	all_cancers(38;1.3e-12)|all_epithelial(29;2.23e-14)|Lung NSC(23;5.92e-10)|all_lung(23;2.08e-09)					ACCTTCAAGTCGTTTGAGGAC	0.483													31	14					0	0	0.004289	0	0
TPTE	7179	broad.mit.edu	37	21	10971337	10971337	+	Missense_Mutation	SNP	G	A	A	rs149877959	byFrequency	TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr21:10971337G>A	uc002yip.1	-	5	388	c.20C>T	c.(19-21)CCG>CTG	p.P7L	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P7L|TPTE_uc002yir.1_Missense_Mutation_p.P7L|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	7					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CAGGTCAGTCGGATCAGGACT	0.373													17	43					0	0	0.001216	0	0
TPTE	7179	broad.mit.edu	37	21	11014938	11014938	+	RNA	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr21:11014938C>T	uc002yis.1	-	7		c.1508G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGCACAATACCTATCACATTG	0.323													16	8					0	0	0.007413	0	0
C2CD2	25966	broad.mit.edu	37	21	43338986	43338986	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr21:43338986G>A	uc002yzw.2	-	4	818	c.576C>T	c.(574-576)ATC>ATT	p.I192I	C2CD2_uc002yzu.2_Silent_p.I24I|C2CD2_uc002yzv.2_Silent_p.I37I|C2CD2_uc002yzx.1_Silent_p.I37I	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	192						cytosol|extracellular region|nucleus				ovary(1)	1						CTTTGGGCTGGATATTAACGG	0.483													51	21					0	0	0.003610	0	0
TRPM2	7226	broad.mit.edu	37	21	45844767	45844767	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr21:45844767C>T	uc002zet.1	+	25	3795	c.3582C>T	c.(3580-3582)ATC>ATT	p.I1194I	TRPM2_uc002zeu.1_Silent_p.I1194I|TRPM2_uc002zew.1_Silent_p.I1194I|TRPM2_uc010gpt.1_Silent_p.I1244I|TRPM2_uc002zex.1_Silent_p.I980I|TRPM2_uc002zey.1_Silent_p.I707I|uc011afe.1_Intron|TRPM2_uc011aff.1_5'Flank	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1194	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGCACTGGATCGTGAGGACGC	0.677													16	6					0	0	0.002780	0	0
ZNF280A	129025	broad.mit.edu	37	22	22869718	22869718	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:22869718G>A	uc002zwe.2	-	2	490	c.237C>T	c.(235-237)TTC>TTT	p.F79F	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	79					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		GATATTGACGGAAGTGGCCTT	0.463													32	59					0	0	0.002096	0	0
BCR	613	broad.mit.edu	37	22	23610670	23610670	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:23610670C>T	uc002zww.2	+	5	2424	c.1828C>T	c.(1828-1830)CAG>TAG	p.Q610*	BCR_uc002zwx.2_Nonsense_Mutation_p.Q610*|BCR_uc011aiy.1_Nonsense_Mutation_p.Q199*|BCR_uc010gtx.1_Intron	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	610	DH.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						GAAGTGCTGTCAGGCCAATGC	0.582			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								12	17					0	0	0.002450	0	0
C22orf43	51233	broad.mit.edu	37	22	23968225	23968225	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:23968225C>T	uc002zxf.2	-	2	496	c.219G>A	c.(217-219)GAG>GAA	p.E73E		NM_016449	NP_057533	Q6PGQ1	CV043_HUMAN	hypothetical protein LOC51233	73										skin(1)	1						TCAGGCGGTCCTCAGGGGGAC	0.507													29	54					0	0	0.002445	0	0
MB	4151	broad.mit.edu	37	22	36007060	36007060	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:36007060C>T	uc003anz.2	-	2	269	c.189G>A	c.(187-189)AAG>AAA	p.K63K	MB_uc003aoa.2_Silent_p.K63K|MB_uc003aob.2_Silent_p.K63K	NM_005368	NP_005359	P02144	MYG_HUMAN	myoglobin	63							heme binding|oxygen transporter activity				0						CACCATGCTTCTTTAAGTCCT	0.547													19	50					0	0	0.001216	0	0
APOL3	80833	broad.mit.edu	37	22	36537577	36537577	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:36537577C>T	uc003aot.2	-	3	918	c.880G>A	c.(880-882)GAA>AAA	p.E294K	APOL3_uc003aoq.2_Missense_Mutation_p.E223K|APOL3_uc003aor.2_Missense_Mutation_p.E223K|APOL3_uc003aos.2_Missense_Mutation_p.E223K|APOL3_uc003aou.2_Missense_Mutation_p.E94K|APOL3_uc003aov.2_Missense_Mutation_p.E94K	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	294					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						GCACGGATTTCACTCCCAATG	0.493													22	49					0	0	0.002299	0	0
MYH9	4627	broad.mit.edu	37	22	36685152	36685153	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:36685152_36685153GG>AA	uc003apg.2	-	32	4766_4767	c.4535_4536CC>TT	c.(4534-4536)TCC>TTT	p.S1512F		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1512	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						CATCATCCTTGGAGCTCATAAG	0.629			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				10	21					0	0	0.004672	0	0
MYH9	4627	broad.mit.edu	37	22	36712663	36712663	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:36712663G>A	uc003apg.2	-	12	1510	c.1279C>T	c.(1279-1281)CGC>TGC	p.R427C	MYH9_uc003aph.1_Missense_Mutation_p.R291C	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	427	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						ACCAGCCAGCGGAACATCCGC	0.567			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				12	52					0	0	0.001368	0	0
ELFN2	114794	broad.mit.edu	37	22	37770430	37770430	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:37770430G>A	uc003asq.3	-	3	1931	c.1145C>T	c.(1144-1146)CCC>CTC	p.P382L		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	382	Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TCCGGGGACGGGGTCCCGCGT	0.637													22	47					0	0	0.002299	0	0
CARD10	29775	broad.mit.edu	37	22	37891784	37891785	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:37891784_37891785GG>AA	uc003asx.1	-	14	2288_2289	c.2285_2286CC>TT	c.(2284-2286)ACC>ATT	p.T762I	CARD10_uc003ast.1_RNA|CARD10_uc003asv.1_5'Flank|CARD10_uc011ank.1_Missense_Mutation_p.T80I|CARD10_uc003asw.1_Missense_Mutation_p.T476I|CARD10_uc003asy.1_Missense_Mutation_p.T762I	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	762					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					AATTGGGCACGGTGCCCCGGTC	0.644													17	21					0	0	0.004672	0	0
TRIOBP	11078	broad.mit.edu	37	22	38131075	38131075	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:38131075C>T	uc003atr.2	+	9	5003	c.4732C>T	c.(4732-4734)CCC>TCC	p.P1578S	TRIOBP_uc003atu.2_Missense_Mutation_p.P1406S	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1578					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GGCCCGTGTCCCCAGCCTGGA	0.682											OREG0026548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	38					0	0	0.004656	0	0
MICALL1	85377	broad.mit.edu	37	22	38320719	38320719	+	Silent	SNP	C	T	T	rs145525171	by1000genomes	TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:38320719C>T	uc003aui.2	+	7	1161	c.1077C>T	c.(1075-1077)TCC>TCT	p.S359S		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	359	Pro-rich.					cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					CGAAGCCGTCCGAGGGGTATG	0.627													26	37					0	0	0.007291	0	0
APOBEC3F	200316	broad.mit.edu	37	22	39448358	39448358	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:39448358G>A	uc003aww.2	+	6	1296	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N		NM_145298	NP_660341	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding				0	Melanoma(58;0.04)					GGGCTACAAAGGTGAGACGTT	0.642													27	49					0	0	0.005443	0	0
RPL3	6122	broad.mit.edu	37	22	39711548	39711548	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:39711548G>T	uc003axi.2	-	5	582	c.514C>A	c.(514-516)CCT>ACT	p.P172T	RPL3_uc003axh.2_Intron|RPL3_uc003axj.2_Missense_Mutation_p.P20T|RPL3_uc010gxx.2_Missense_Mutation_p.P120T|RPL3_uc003axg.2_Missense_Mutation_p.P120T|RPL3_uc003axk.1_Missense_Mutation_p.P20T	NM_000967	NP_000958	P39023	RL3_HUMAN	ribosomal protein L3 isoform a	172					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome			breast(1)|kidney(1)	2	Melanoma(58;0.04)					TGGCGCAGAGGAAGCAGGCGC	0.617													17	25					2.35188e-11	3.854e-11	0.006122	1	0
ENTHD1	150350	broad.mit.edu	37	22	40283633	40283633	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:40283633G>A	uc003ayg.2	-	2	371	c.120C>T	c.(118-120)ATC>ATT	p.I40I		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	40	ENTH.									ovary(2)|skin(1)	3	Melanoma(58;0.0749)					TCAAGTCACTGATATCTAACA	0.403													24	67					0	0	0.002780	0	0
XRCC6	2547	broad.mit.edu	37	22	42033664	42033664	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:42033664C>T	uc003bao.1	+	6	712	c.642C>T	c.(640-642)TCC>TCT	p.S214S	XRCC6_uc003bap.1_Silent_p.S173S|XRCC6_uc011apc.1_Silent_p.S164S|XRCC6_uc003baq.1_Silent_p.S214S|XRCC6_uc003bar.1_Silent_p.S214S|XRCC6_uc003bas.1_Silent_p.S164S	NM_001469	NP_001460	P12956	XRCC6_HUMAN	ATP-dependent DNA helicase II, 70 kDa subunit	214					DNA ligation|double-strand break repair via nonhomologous end joining|initiation of viral infection|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|provirus integration|telomere maintenance|transcription, DNA-dependent	DNA-dependent protein kinase-DNA ligase 4 complex|Ku70:Ku80 complex|membrane fraction|nuclear telomere cap complex|transcription factor complex	5'-deoxyribose-5-phosphate lyase activity|ATP binding|ATP-dependent DNA helicase activity|double-stranded DNA binding|protein C-terminus binding|transcription regulatory region DNA binding			skin(2)|ovary(1)|lung(1)|kidney(1)	5						TTGACATATCCTTGTTCTACA	0.468								Direct_reversal_of_damage|NHEJ					6	20					0	0	0.001168	0	0
BRD1	23774	broad.mit.edu	37	22	50217637	50217637	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr22:50217637G>A	uc003biv.2	-	1	816	c.329C>T	c.(328-330)ACG>ATG	p.T110M	BRD1_uc011arf.1_Translation_Start_Site|BRD1_uc011arg.1_Missense_Mutation_p.T110M|BRD1_uc011arh.1_Missense_Mutation_p.T110M|BRD1_uc003biu.3_Missense_Mutation_p.T110M	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	110					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CGAGGCCGGCGTGCCGTGGGC	0.602													21	69					0	0	0.003330	0	0
CHL1	10752	broad.mit.edu	37	3	447335	447335	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:447335G>A	uc003bou.2	+	27	3839	c.3568G>A	c.(3568-3570)GAG>AAG	p.E1190K	CHL1_uc003bot.2_Missense_Mutation_p.E1206K|CHL1_uc011asi.1_Missense_Mutation_p.E1153K	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	1190	Cytoplasmic (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TGGATCTAAGGAGAAGGGATC	0.468													15	34					0	0	0.004990	0	0
LRRN1	57633	broad.mit.edu	37	3	3886905	3886905	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:3886905G>A	uc003bpt.3	+	2	1341	c.580G>A	c.(580-582)GAA>AAA	p.E194K	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	194	Extracellular (Potential).|LRR 6.					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		ACCCAACCTGGAAATTCTCAT	0.393													41	83					0	0	0.001951	0	0
SEC13	6396	broad.mit.edu	37	3	10353760	10353760	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:10353760G>A	uc003bvn.2	-	5	458	c.339C>T	c.(337-339)CCC>CCT	p.P113P	SEC13_uc003bvl.2_Silent_p.P45P|SEC13_uc003bvm.2_Silent_p.P99P|SEC13_uc003bvp.2_Silent_p.P116P|SEC13_uc003bvo.2_Silent_p.P159P|SEC13_uc003bvq.1_Silent_p.P99P|SEC13_uc003bvr.1_Silent_p.P99P|SEC13_uc011aul.1_Silent_p.P113P	NM_183352	NP_899195	P55735	SEC13_HUMAN	SEC13 protein isoform 1	113	WD 3.				COPII vesicle coating|intracellular protein transport|mitotic prometaphase|mRNA transport|post-translational protein modification|protein N-linked glycosylation via asparagine|transmembrane transport	cytosol|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Nup107-160 complex	protein binding			ovary(1)	1						CGTAGTCATGGGGGGCCCAGC	0.602													6	7					0	0	0.001168	0	0
THRB	7068	broad.mit.edu	37	3	24164556	24164556	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:24164556G>A	uc003ccx.3	-	11	1554	c.1205C>T	c.(1204-1206)GCC>GTC	p.A402V	THRB_uc010hfe.2_Missense_Mutation_p.A402V|THRB_uc003ccy.3_Missense_Mutation_p.A402V|THRB_uc003ccz.3_Missense_Mutation_p.A397V	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	402	Ligand-binding.|Interaction with NR2F6.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	GTGTTCAAAGGCCAGCAGGAA	0.478													46	88					0	0	0.002852	0	0
DCLK3	85443	broad.mit.edu	37	3	36779026	36779026	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:36779026G>A	uc003cgi.2	-	2	1616	c.1125C>T	c.(1123-1125)CAC>CAT	p.H375H		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	375	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TGGTCTCGCGGTGTCTGCACT	0.547													21	38					0	0	0.001523	0	0
SCN10A	6336	broad.mit.edu	37	3	38766694	38766694	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:38766694C>T	uc003ciq.2	-	17	3199	c.3199G>A	c.(3199-3201)GAT>AAT	p.D1067N		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1067					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACAGACTCATCTTTCCACGTC	0.597													12	22					0	0	0.003163	0	0
SCN10A	6336	broad.mit.edu	37	3	38781155	38781155	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:38781155C>T	uc003ciq.2	-	14	2131	c.2131G>A	c.(2131-2133)GAA>AAA	p.E711K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	711	Helical; Name=S2 of repeat II; (Potential).|II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AAGACCATTTCAGCAGTAAAA	0.413													7	22					0	0	0.000673	0	0
SCN11A	11280	broad.mit.edu	37	3	38888937	38888937	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:38888937G>A	uc011ays.1	-	26	4823	c.4624C>T	c.(4624-4626)CTC>TTC	p.L1542F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1542	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AAGAGACAGAGCATGCTGCTG	0.448													13	34					0	0	0.003163	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307076	39307076	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:39307076C>A	uc003cjl.2	-	2	1017	c.925G>T	c.(925-927)GGG>TGG	p.G309W		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	309	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		AGGCATTTCCCATACAGGTGG	0.483													36	73					9.62906e-15	1.58078e-14	0.006230	1	0
KBTBD5	131377	broad.mit.edu	37	3	42732418	42732418	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:42732418C>T	uc003clv.1	+	5	1775	c.1675C>T	c.(1675-1677)CTC>TTC	p.L559F		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	559	Kelch 5.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GGTGGGTACCCTCTATGCCAT	0.602													19	26					0	0	0.006122	0	0
ZNF660	285349	broad.mit.edu	37	3	44636455	44636455	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:44636455C>T	uc003cnl.1	+	3	1103	c.770C>T	c.(769-771)TCT>TTT	p.S257F		NM_173658	NP_775929	Q6AZW8	ZN660_HUMAN	zinc finger protein 660	257	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(197;0.0468)|Kidney(197;0.0585)		GCTTTTACTTCTAATCGAAAC	0.373													19	38					0	0	0.006122	0	0
CCR3	1232	broad.mit.edu	37	3	46306885	46306885	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:46306885C>T	uc003cpg.1	+	4	779	c.236C>T	c.(235-237)TCG>TTG	p.S79L	CCR3_uc003cpi.1_Missense_Mutation_p.S79L|CCR3_uc003cpj.1_Missense_Mutation_p.S79L|CCR3_uc003cpk.1_Missense_Mutation_p.S100L|CCR3_uc010hjb.1_Missense_Mutation_p.S97L|CCR3_uc003cpl.1_Missense_Mutation_p.S112L	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	79	Helical; Name=2; (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		CTGGCCATTTCGGACCTGCTC	0.512													38	85					0	0	0.006230	0	0
NBEAL2	23218	broad.mit.edu	37	3	47033334	47033334	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:47033334C>T	uc003cqp.2	+	9	1109	c.930C>T	c.(928-930)GCC>GCT	p.A310A	NBEAL2_uc003cqq.1_Silent_p.A303A	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	310							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		CCACAGACGCCATCCCCATGA	0.562													3	5					0	0	0.000248	0	0
C3orf71	646450	broad.mit.edu	37	3	48956273	48956273	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:48956273C>T	uc010hkk.1	-	1	546	c.310G>A	c.(310-312)GAA>AAA	p.E104K	ARIH2_uc003cvb.2_5'Flank|ARIH2_uc003cvc.2_5'Flank	NM_001123040	NP_001116512	Q8N7S6	CC071_HUMAN	hypothetical protein LOC646450	104						integral to membrane					0						CCAAGCACTTCCGGAGCTGTG	0.711													15	11					0	0	0.004007	0	0
ITIH3	3699	broad.mit.edu	37	3	52835087	52835087	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:52835087G>A	uc003dfv.2	+	11	1344	c.1308G>A	c.(1306-1308)CTG>CTA	p.L436L	ITIH3_uc011bek.1_Silent_p.L436L	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	436	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		ATAACTTCCTGGAGAACATGG	0.448													18	48					0	0	0.007413	0	0
ITIH3	3699	broad.mit.edu	37	3	52836407	52836407	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:52836407G>A	uc003dfv.2	+	12	1477	c.1441G>A	c.(1441-1443)GAG>AAG	p.E481K	ITIH3_uc011bek.1_Missense_Mutation_p.E481K	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	481					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GGAGTACCCCGAGAACGCTAT	0.602													16	38					0	0	0.004990	0	0
CADPS	8618	broad.mit.edu	37	3	62498432	62498432	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:62498432C>T	uc003dll.2	-	17	2953	c.2593G>A	c.(2593-2595)GAT>AAT	p.D865N	CADPS_uc003dlk.1_Missense_Mutation_p.D369N|CADPS_uc003dlm.2_Intron|CADPS_uc003dln.2_Intron	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	865	Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TCACCTGCATCCTTTTGATTC	0.358													7	18					0	0	0.003080	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64633651	64633651	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:64633651G>A	uc003dmg.2	-	11	1707	c.1675C>T	c.(1675-1677)CCC>TCC	p.P559S	ADAMTS9_uc011bfo.1_Missense_Mutation_p.P531S|ADAMTS9_uc003dmh.1_Missense_Mutation_p.P388S|ADAMTS9_uc003dmk.1_Missense_Mutation_p.P559S	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	559	Disintegrin.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TCGGCCCAGGGTGTGTGCTGA	0.512													165	401					0	0	0.003610	0	0
LMOD3	56203	broad.mit.edu	37	3	69168818	69168818	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:69168818C>T	uc003dns.2	-	2	897	c.688G>A	c.(688-690)GTA>ATA	p.V230I	LMOD3_uc003dnt.2_Missense_Mutation_p.V230I	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	230						cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		CTTGTACTTACCTTCAAAAAG	0.423													55	61					0	0	0.003610	0	0
MITF	4286	broad.mit.edu	37	3	69928368	69928368	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:69928368T>A	uc003dnz.2	+	2	304	c.188T>A	c.(187-189)CTC>CAC	p.L63H	MITF_uc011bgb.1_Missense_Mutation_p.L11H|MITF_uc003doa.2_Missense_Mutation_p.L62H|MITF_uc003dob.2_Missense_Mutation_p.L47H|MITF_uc003dod.2_Missense_Mutation_p.L38H|MITF_uc003doc.1_RNA	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	63					melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		CGCCAGCAACTCATGCGTGAG	0.587			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						23	29					0	0	0.003330	0	0
CNTN3	5067	broad.mit.edu	37	3	74334608	74334608	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:74334608G>A	uc003dpm.1	-	19	2632	c.2552C>T	c.(2551-2553)TCA>TTA	p.S851L		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	851	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		CTTACTGGATGATTCCTCCTT	0.498													50	81					0	0	0.003610	0	0
EPHA3	2042	broad.mit.edu	37	3	89480404	89480404	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:89480404C>T	uc003dqy.2	+	13	2466	c.2241C>T	c.(2239-2241)CTC>CTT	p.L747L	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	747	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		ACCGAGACCTCGCTGCTCGGA	0.493										TSP Lung(6;0.00050)			22	29					0	0	0.001523	0	0
HHLA2	11148	broad.mit.edu	37	3	108072514	108072514	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:108072514G>A	uc003dwy.3	+	4	472	c.305G>A	c.(304-306)GGG>GAG	p.G102E	HHLA2_uc011bhl.1_Intron|HHLA2_uc010hpu.2_Missense_Mutation_p.G102E|HHLA2_uc003dwz.2_Missense_Mutation_p.G102E	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	102	Ig-like V-type 1.					integral to membrane				ovary(1)	1						ATTCAAAATGGGAATGCGTCG	0.398													15	31					0	0	0.002450	0	0
PARP9	83666	broad.mit.edu	37	3	122274779	122274779	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:122274779G>A	uc010hri.2	-	4	489	c.344C>T	c.(343-345)ACT>ATT	p.T115I	PARP9_uc003eff.3_Missense_Mutation_p.T80I|PARP9_uc011bjs.1_Missense_Mutation_p.T80I|PARP9_uc003efg.2_Intron|PARP9_uc003efi.2_Missense_Mutation_p.T80I|PARP9_uc003efh.2_Missense_Mutation_p.T115I|PARP9_uc003efj.2_Missense_Mutation_p.T80I	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	115	Macro 1.				cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		TATCCTAGGAGTCAGCATTTT	0.473													15	25					0	0	0.002450	0	0
PLXNA1	5361	broad.mit.edu	37	3	126730847	126730847	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:126730847G>T	uc003ejg.2	+	9	2094	c.2090G>T	c.(2089-2091)GGA>GTA	p.G697V		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	720	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		GTGCCAGTGGGAGTGGTAAAA	0.632													25	42					1.5548e-18	2.56656e-18	0.005443	1	0
KIAA1257	57501	broad.mit.edu	37	3	128696912	128696912	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:128696912C>T	uc003elj.3	-	5	980	c.784G>A	c.(784-786)GAA>AAA	p.E262K	KIAA1257_uc003elg.1_Missense_Mutation_p.E262K|KIAA1257_uc003eli.3_Missense_Mutation_p.E150K	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	262											0						GGGTGTTTTTCTGTTTTTTCT	0.463													20	51					0	0	0.001216	0	0
AADAC	13	broad.mit.edu	37	3	151535223	151535223	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:151535223G>A	uc003eze.2	+	2	298	c.208G>A	c.(208-210)GAA>AAA	p.E70K		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	70	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GAGCTTTGATGAAGTCCCACC	0.408													20	41					0	0	0.007413	0	0
PLCH1	23007	broad.mit.edu	37	3	155241724	155241724	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:155241724C>T	uc011bok.1	-	10	1673	c.1396G>A	c.(1396-1398)GAT>AAT	p.D466N	PLCH1_uc011boj.1_Missense_Mutation_p.D466N|PLCH1_uc011bol.1_Missense_Mutation_p.D448N	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	466					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TCAATTTCATCTGCACTGTCC	0.388													37	78					0	0	0.007835	0	0
SI	6476	broad.mit.edu	37	3	164733868	164733868	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:164733868C>T	uc003fei.2	-	32	3822	c.3760G>A	c.(3760-3762)GAT>AAT	p.D1254N		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1254	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TACTGAACATCCTGAAATATC	0.323										HNSCC(35;0.089)			36	88					0	0	0.003271	0	0
SI	6476	broad.mit.edu	37	3	164755734	164755734	+	Missense_Mutation	SNP	C	T	T	rs138778317		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:164755734C>T	uc003fei.2	-	21	2442	c.2380G>A	c.(2380-2382)GGT>AGT	p.G794S		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	794	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ATGATATAACCTCCTCTAAGA	0.318										HNSCC(35;0.089)			9	22					0	0	0.000978	0	0
WDR49	151790	broad.mit.edu	37	3	167254669	167254669	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:167254669G>A	uc003fev.1	-	7	1193	c.887C>T	c.(886-888)ACT>ATT	p.T296I	WDR49_uc003feu.1_Missense_Mutation_p.T121I|WDR49_uc011bpd.1_Missense_Mutation_p.T360I|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	296	WD 5.									large_intestine(1)|ovary(1)|skin(1)	3						CGTAACAAGAGTTTGTGGAGG	0.383													14	24					0	0	0.002450	0	0
MECOM	2122	broad.mit.edu	37	3	168834197	168834197	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:168834197G>A	uc003ffi.3	-	7	1168	c.899C>T	c.(898-900)TCT>TTT	p.S300F	MECOM_uc010hwk.1_Missense_Mutation_p.S323F|MECOM_uc003ffj.3_Missense_Mutation_p.S365F|MECOM_uc011bpi.1_Missense_Mutation_p.S301F|MECOM_uc003ffn.3_Missense_Mutation_p.S300F|MECOM_uc003ffk.2_Missense_Mutation_p.S300F|MECOM_uc003ffl.2_Missense_Mutation_p.S460F|MECOM_uc011bpj.1_Missense_Mutation_p.S488F|MECOM_uc011bpk.1_Missense_Mutation_p.S290F|MECOM_uc010hwn.2_Missense_Mutation_p.S488F	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	300					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GAAGCTAAAAGAAAATCCAGG	0.478													17	30					0	0	0.007413	0	0
YEATS2	55689	broad.mit.edu	37	3	183469919	183469919	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:183469919C>T	uc003fly.2	+	10	1223	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	343					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TATCCTCAGTCCTCGGAGTCT	0.483													34	65					0	0	0.004289	0	0
RTP1	132112	broad.mit.edu	37	3	186915556	186915556	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr3:186915556G>A	uc003frg.2	+	1	283	c.253G>A	c.(253-255)GAA>AAA	p.E85K		NM_153708	NP_714919	P59025	RTP1_HUMAN	receptor transporting protein 1	85	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding			ovary(2)|breast(1)	3	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		GCAGTACCTGGAATTGCATGC	0.572													24	52					0	0	0.003954	0	0
ZNF141	7700	broad.mit.edu	37	4	367297	367297	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:367297T>A	uc003gaa.2	+	5	1249	c.1071T>A	c.(1069-1071)CAT>CAA	p.H357Q	ZNF141_uc003gab.2_Intron	NM_003441	NP_003432	Q15928	ZN141_HUMAN	zinc finger protein 141	357	C2H2-type 7.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0						TGAATGAACATAAGAAAGTTC	0.403													5	26					0	0	0.000602	0	0
ZNF141	7700	broad.mit.edu	37	4	367299	367299	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:367299A>G	uc003gaa.2	+	5	1251	c.1073A>G	c.(1072-1074)AAG>AGG	p.K358R	ZNF141_uc003gab.2_Intron	NM_003441	NP_003432	Q15928	ZN141_HUMAN	zinc finger protein 141	358	C2H2-type 7.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0						AATGAACATAAGAAAGTTCAT	0.403													6	25					0	0	0.001168	0	0
SORCS2	57537	broad.mit.edu	37	4	7705054	7705054	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:7705054G>A	uc003gkb.3	+	13	1716	c.1716G>A	c.(1714-1716)GTG>GTA	p.V572V	SORCS2_uc011bwi.1_Silent_p.V400V	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	572	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						ACGGCGGCGTGATCGTGGCCA	0.597													8	11					0	0	0.006214	0	0
ZNF518B	85460	broad.mit.edu	37	4	10447873	10447873	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:10447873G>A	uc003gmn.2	-	3	567	c.80C>T	c.(79-81)CCT>CTT	p.P27L		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	27					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						ATTAGCATCAGGCTGTTTGGG	0.453													72	129					0	0	0.003610	0	0
SLIT2	9353	broad.mit.edu	37	4	20598061	20598061	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:20598061C>T	uc003gpr.1	+	32	3548	c.3344C>T	c.(3343-3345)CCA>CTA	p.P1115L	SLIT2_uc003gps.1_Missense_Mutation_p.P1107L	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1115					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GAGTTTTCTCCACCCATGGTC	0.383													14	48					0	0	0.003163	0	0
SEPSECS	51091	broad.mit.edu	37	4	25125709	25125709	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:25125709G>A	uc003grg.2	-	11	1563	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	SEPSECS_uc003gri.2_Silent_p.F449F|SEPSECS_uc003grh.2_Silent_p.F371F	NM_153825	NP_722547	Q9HD40	SPCS_HUMAN	Sep (O-phosphoserine) tRNA:Sec (selenocysteine)	450					selenocysteine incorporation	cytoplasm|nucleus	pyridoxal phosphate binding|transferase activity, transferring selenium-containing groups|tRNA binding				0		Breast(46;0.173)			Pyridoxal Phosphate(DB00114)	GTCTCTTTATGAACAGGTCCA	0.378													23	47					0	0	0.003954	0	0
UGT2A3	79799	broad.mit.edu	37	4	69795577	69795577	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:69795577G>A	uc003hef.2	-	6	1569	c.1538C>T	c.(1537-1539)TCC>TTC	p.S513F	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	513	Cytoplasmic (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TTTTTGACAGGAAAATAAAAA	0.383													9	21					0	0	0.004482	0	0
PROL1	58503	broad.mit.edu	37	4	71275337	71275337	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:71275337C>T	uc003hfi.2	+	3	466	c.292C>T	c.(292-294)CTC>TTC	p.L98F		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	98	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				ACAACCTCGACTCTTTCCGGG	0.413													57	102					0	0	0.003610	0	0
PARM1	25849	broad.mit.edu	37	4	75937680	75937680	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:75937680C>T	uc003hih.1	+	2	329	c.89C>T	c.(88-90)TCT>TTT	p.S30F		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	30	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						TTGTCTGTTTCTCTTCCGACA	0.473													16	42					0	0	0.006122	0	0
FRAS1	80144	broad.mit.edu	37	4	79300951	79300951	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:79300951G>A	uc003hlb.2	+	27	3804	c.3364G>A	c.(3364-3366)GAT>AAT	p.D1122N	FRAS1_uc003hkw.2_Missense_Mutation_p.D1122N	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1121	CSPG 1.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						AAAGCCACTGGATTTTTCCCT	0.458													17	40					0	0	0.004007	0	0
FGF5	2250	broad.mit.edu	37	4	81207665	81207665	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:81207665C>T	uc003hmd.2	+	3	883	c.646C>T	c.(646-648)CTG>TTG	p.L216L	FGF5_uc003hme.2_3'UTR	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	216					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						TACCCATTTTCTGCCAAGATT	0.493													30	68					0	0	0.002836	0	0
FAM190A	401145	broad.mit.edu	37	4	91229576	91229576	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:91229576C>T	uc003hsv.3	+	2	481	c.141C>T	c.(139-141)TCC>TCT	p.S47S	FAM190A_uc003hsu.3_Silent_p.S47S|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Silent_p.S47S	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	47	Ser-rich.									large_intestine(1)|ovary(1)	2						CCTCTCCTTCCAGCACTAACT	0.453													15	30					0	0	0.003163	0	0
FAM190A	401145	broad.mit.edu	37	4	91229641	91229641	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:91229641G>C	uc003hsv.3	+	2	546	c.206G>C	c.(205-207)AGC>ACC	p.S69T	FAM190A_uc003hsu.3_Missense_Mutation_p.S69T|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.S69T	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	69	Ser-rich.									large_intestine(1)|ovary(1)	2						CCTTCCATTAGCTTCCACCAT	0.468													23	57					0	0	0.005443	0	0
ENPEP	2028	broad.mit.edu	37	4	111398053	111398053	+	Silent	SNP	C	T	T	rs146450390		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:111398053C>T	uc003iab.3	+	1	825	c.483C>T	c.(481-483)TTC>TTT	p.F161F		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	161	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding	p.F161F(1)		skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	GGAGGTGTTTCGAGTACAAAA	0.627													51	132					0	0	0.003610	0	0
CLGN	1047	broad.mit.edu	37	4	141311862	141311862	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:141311862C>T	uc011chi.1	-	15	1890	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	CLGN_uc003iii.2_Missense_Mutation_p.E558K	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	558	Cytoplasmic (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					TCACTCTTTTCCTCAGGTTCA	0.318													15	32					0	0	0.002450	0	0
DCHS2	54798	broad.mit.edu	37	4	155156834	155156834	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:155156834G>A	uc003inw.2	-	25	7605	c.7605C>T	c.(7603-7605)TTC>TTT	p.F2535F		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2535					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AGCTGCTGGCGAACACTGCCA	0.388													8	26					0	0	0.004482	0	0
ODZ3	55714	broad.mit.edu	37	4	183600827	183600827	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:183600827C>T	uc003ivd.1	+	7	1372	c.1335C>T	c.(1333-1335)TTC>TTT	p.F445F	ODZ3_uc003ive.1_5'Flank	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	445	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGTATGACTTCGTGGAGCTCC	0.532													26	45					0	0	0.002445	0	0
TRIML2	205860	broad.mit.edu	37	4	189012789	189012789	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr4:189012789G>A	uc003izl.2	-	7	938	c.902C>T	c.(901-903)ACT>ATT	p.T301I	TRIML2_uc003izj.1_Missense_Mutation_p.T129I|TRIML2_uc003izk.1_Missense_Mutation_p.T109I|TRIML2_uc011cle.1_Missense_Mutation_p.T376I	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	301	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GACCCAGAGAGTCCACTCGGT	0.567													54	134					0	0	0.003610	0	0
SLC6A3	6531	broad.mit.edu	37	5	1403074	1403074	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:1403074G>A	uc003jck.2	-	13	1851	c.1730C>T	c.(1729-1731)GCC>GTC	p.A577V		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	577	Helical; Name=12; (Potential).|Interaction with TGFB1I1.				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	GAACTTGTAGGCCGCATAGAT	0.632													11	21					0	0	0.001855	0	0
CTNND2	1501	broad.mit.edu	37	5	11117571	11117571	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:11117571G>A	uc003jfa.1	-	13	2413	c.2268C>T	c.(2266-2268)ATC>ATT	p.I756I	CTNND2_uc010itt.2_Silent_p.I665I|CTNND2_uc011cmy.1_Silent_p.I419I|CTNND2_uc011cmz.1_Silent_p.I323I|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.I323I	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	756	ARM 6.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CCTTGCTATCGATCTCACTGC	0.527													59	117					0	0	0.003610	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965577	35965577	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:35965577C>T	uc003jjv.1	-	4	911	c.754G>A	c.(754-756)GAT>AAT	p.D252N	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.D252N|UGT3A1_uc011cor.1_Missense_Mutation_p.D218N|UGT3A1_uc003jjy.1_Missense_Mutation_p.D198N	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	252	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAGGCAAAATCAGAGTTAACA	0.433													26	50					0	0	0.003330	0	0
LIFR	3977	broad.mit.edu	37	5	38484964	38484964	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:38484964C>T	uc010ive.1	-	18	2836	c.2504G>A	c.(2503-2505)GGA>GAA	p.G835E	LIFR_uc003jli.2_Missense_Mutation_p.G835E	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	835	Helical; (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					AATAATTAATCCCACAGCTGA	0.378			T	PLAG1	salivary adenoma								8	23					0	0	0.004482	0	0
MARVELD2	153562	broad.mit.edu	37	5	68715972	68715972	+	Missense_Mutation	SNP	C	T	T	rs141046438		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:68715972C>T	uc003jwq.2	+	2	819	c.760C>T	c.(760-762)CCT>TCT	p.P254S	MARVELD2_uc010ixf.2_Missense_Mutation_p.P254S|MARVELD2_uc003jwr.1_Missense_Mutation_p.P254S|MARVELD2_uc003jws.1_Intron	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	MARVEL domain containing 2 isoform 1	254	MARVEL.|Cytoplasmic (Potential).				sensory perception of sound	integral to membrane|tight junction					0		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		CCCTAAGACCCCTTTTGTACT	0.468													17	50					0	0	0.004990	0	0
SPZ1	84654	broad.mit.edu	37	5	79616732	79616732	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:79616732G>A	uc003kgn.2	+	1	943	c.698G>A	c.(697-699)AGA>AAA	p.R233K	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	233	Potential.|Basic motif (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		GCAAAAAACAGACTTAATGTT	0.353													15	26					0	0	0.002450	0	0
ZFYVE16	9765	broad.mit.edu	37	5	79734515	79734516	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:79734515_79734516CC>TT	uc003kgr.3	+	4	2313_2314	c.2011_2012CC>TT	c.(2011-2013)CCA>TTA	p.P671L	ZFYVE16_uc010jak.1_Missense_Mutation_p.P671L|ZFYVE16_uc003kgp.2_Missense_Mutation_p.P671L|ZFYVE16_uc003kgq.3_Missense_Mutation_p.P671L|ZFYVE16_uc003kgs.3_Missense_Mutation_p.P671L	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	671					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		GCCAGATGTTCCAGATACAATA	0.421													17	33					0	0	0.004672	0	0
EDIL3	10085	broad.mit.edu	37	5	83360577	83360577	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:83360577G>A	uc003kio.1	-	8	1313	c.894C>T	c.(892-894)CCC>CCT	p.P298P	EDIL3_uc003kip.1_Silent_p.P288P|EDIL3_uc011ctt.1_Silent_p.P75P	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	298	F5/8 type C 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		GACAAACTTGGGGATAGAGTC	0.383													19	40					0	0	0.001216	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181759	140181759	+	Missense_Mutation	SNP	G	A	A	rs148196865		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:140181759G>A	uc003lhf.2	+	1	977	c.977G>A	c.(976-978)GGA>GAA	p.G326E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.G326E	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	326	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding	p.G326E(1)		ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGGATAAAGGAAATCCCCCA	0.378													19	39					0	0	0.001523	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249817	140249817	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:140249817G>C	uc003lia.2	+	1	1987	c.1129G>C	c.(1129-1131)GAC>CAC	p.D377H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.D377H	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	377	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCTGACCGTGACTCAGGTGT	0.577													28	50					0	0	0.004656	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501978	140501978	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:140501978C>T	uc003lip.1	+	1	398	c.398C>T	c.(397-399)CCT>CTT	p.P133L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	133	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCAATATTCCCTGAAAGGGAA	0.428													12	32					0	0	0.001368	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625713	140625713	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:140625713G>A	uc003lje.2	+	1	567	c.567G>A	c.(565-567)AGG>AGA	p.R189R		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	189	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGATGGCAGGAAATACCCAG	0.537													11	22					0	0	0.001368	0	0
SH3TC2	79628	broad.mit.edu	37	5	148421065	148421065	+	Silent	SNP	G	A	A	rs80227512	byFrequency	TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:148421065G>A	uc003lpu.2	-	6	797	c.645C>T	c.(643-645)TCC>TCT	p.S215S	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_5'UTR|SH3TC2_uc010jgx.2_Silent_p.S208S|SH3TC2_uc003lpv.1_5'UTR|SH3TC2_uc011dbz.1_Silent_p.S100S	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	215							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTCCAACTCGGAGCCAGCTT	0.562													21	27					0	0	0.001523	0	0
PDE6A	5145	broad.mit.edu	37	5	149286902	149286902	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:149286902G>A	uc003lrg.3	-	7	1158	c.1038C>T	c.(1036-1038)CTC>CTT	p.L346L		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	346	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CATAAGCTGGGAGACCGCTTA	0.468													32	55					0	0	0.002445	0	0
GRK6	2870	broad.mit.edu	37	5	176859722	176859722	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:176859722C>T	uc011dfz.1	+	5	515	c.355C>T	c.(355-357)CCT>TCT	p.P119S	GRK6_uc003mgp.2_Missense_Mutation_p.P119S|GRK6_uc003mgq.2_Missense_Mutation_p.P119S|GRK6_uc003mgs.1_Missense_Mutation_p.P89S	NM_002082	NP_002073	P43250	GRK6_HUMAN	G protein-coupled receptor kinase 6 isoform B	119	N-terminal.|RGS.				regulation of G-protein coupled receptor protein signaling pathway	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)|stomach(1)|breast(1)	3	all_cancers(89;1.15e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGACCTCATCCCTGAGGTCCC	0.647													3	9					0	0	0.000248	0	0
DOK3	79930	broad.mit.edu	37	5	176931356	176931356	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:176931356G>A	uc003mhk.2	-	6	1124	c.1119C>T	c.(1117-1119)CCC>CCT	p.P373P	DOK3_uc003mhh.3_Intron|DOK3_uc003mhi.3_Intron|DOK3_uc003mhj.3_Intron|DOK3_uc003mhl.2_Silent_p.P317P	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	373	Pro-rich.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			CCAGATCGTTGGGCTCCGGGC	0.647													8	18					0	0	0.000673	0	0
DOK3	79930	broad.mit.edu	37	5	176931811	176931811	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:176931811T>C	uc003mhk.2	-	5	751	c.746A>G	c.(745-747)GAG>GGG	p.E249G	DOK3_uc003mhh.3_Missense_Mutation_p.E79G|DOK3_uc003mhi.3_Missense_Mutation_p.E193G|DOK3_uc003mhj.3_Missense_Mutation_p.E91G|DOK3_uc003mhl.2_Missense_Mutation_p.E193G	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	249	IRS-type PTB.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			GCCCTTGGCCTCCCTCAGCTG	0.682													3	56					0	0	0.000248	0	0
NHP2	55651	broad.mit.edu	37	5	177580796	177580796	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr5:177580796G>A	uc003mir.2	-	1	166	c.23C>T	c.(22-24)CCC>CTC	p.P8L	NHP2_uc003mis.2_Missense_Mutation_p.P8L	NM_017838	NP_060308	Q9NX24	NHP2_HUMAN	nucleolar protein family A, member 2 isoform a	8					rRNA pseudouridine synthesis	Cajal body|nucleolus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding				0						GGGCCCGTCGGGATCTGCCTT	0.647													4	9					0	0	0.001984	0	0
PRPF4B	8899	broad.mit.edu	37	6	4057321	4057321	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:4057321C>T	uc003mvv.2	+	13	2724	c.2633C>T	c.(2632-2634)ACC>ATC	p.T878I	PRPF4B_uc003mvw.2_RNA|C6orf146_uc010jnq.1_Intron|PRPF4B_uc011dhv.1_RNA	NM_003913	NP_003904	Q13523	PRP4B_HUMAN	serine/threonine-protein kinase PRP4K	878	Protein kinase.					catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity			breast(5)	5	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				GTAGGTTGCACCTTATACGAA	0.348													40	79					0	0	0.002222	0	0
SSR1	6745	broad.mit.edu	37	6	7295626	7295626	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:7295626G>A	uc003mxf.3	-	7	980	c.792C>T	c.(790-792)ATC>ATT	p.I264I	SSR1_uc003mxg.3_Silent_p.I196I|SSR1_uc010jny.2_Silent_p.I264I	NM_003144	NP_003135	P43307	SSRA_HUMAN	signal sequence receptor, alpha precursor	264	Cytoplasmic (Potential).				cotranslational protein targeting to membrane|positive regulation of cell proliferation	endoplasmic reticulum membrane|integral to membrane	signal sequence binding				0	Ovarian(93;0.0398)					ACTACTTACTGATTTGATTCA	0.323													15	20					0	0	0.004990	0	0
SYCP2L	221711	broad.mit.edu	37	6	10935409	10935409	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:10935409C>T	uc003mzo.2	+	21	2098	c.1802C>T	c.(1801-1803)GCC>GTC	p.A601V	SYCP2L_uc010jow.2_Missense_Mutation_p.A221V	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	601						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			GAAGATTCTGCCCAGAAAACA	0.318													15	24					0	0	0.001216	0	0
BTN2A3	54718	broad.mit.edu	37	6	26426568	26426568	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:26426568G>A	uc011dkl.1	+	3	553	c.523G>A	c.(523-525)GTG>ATG	p.V175M	BTN2A3_uc011dkm.1_RNA					RecName: Full=Butyrophilin subfamily 2 member A3; Flags: Precursor;												0						GCCCCTCACAGTGTGGAGGGA	0.597													24	49					0	0	0.002299	0	0
PGBD1	84547	broad.mit.edu	37	6	28268586	28268586	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:28268586C>T	uc003nky.2	+	7	1325	c.955C>T	c.(955-957)CCA>TCA	p.P319S	PGBD1_uc003nkz.2_Missense_Mutation_p.P319S	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	319					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						GGACCGTCACCCAGGTGATTT	0.473													26	52					0	0	0.007291	0	0
GPX5	2880	broad.mit.edu	37	6	28501836	28501836	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:28501836C>T	uc003nll.2	+	5	560	c.558C>T	c.(556-558)TTC>TTT	p.F186F	GPX5_uc003nlm.2_3'UTR|GPX5_uc003nln.2_RNA	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	186					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	TTGAAAAGTTCCTGGTGGGGC	0.507													28	93					0	0	0.001512	0	0
SCAND3	114821	broad.mit.edu	37	6	28543044	28543044	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:28543044G>A	uc003nlo.2	-	3	2056	c.1438C>T	c.(1438-1440)CGA>TGA	p.R480*		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	480	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATCCTCTTTCGGATATCCTCA	0.423													53	48					0	0	0.003610	0	0
OR2J3	442186	broad.mit.edu	37	6	29079670	29079670	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:29079670G>A	uc011dll.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AATAGGAAATGAATGATGATG	0.259													64	63					0	0	0.003610	0	0
DDR1	780	broad.mit.edu	37	6	30858825	30858825	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:30858825C>T	uc003nrr.2	+	6	752	c.493C>T	c.(493-495)CGC>TGC	p.R165C	DDR1_uc010jse.2_Missense_Mutation_p.R165C|DDR1_uc003nrq.2_Missense_Mutation_p.R165C|DDR1_uc003nrs.2_Missense_Mutation_p.R165C|DDR1_uc003nrt.2_Missense_Mutation_p.R165C|DDR1_uc011dms.1_Missense_Mutation_p.R183C|DDR1_uc011dmt.1_Missense_Mutation_p.R191C|DDR1_uc003nru.2_Missense_Mutation_p.R165C|DDR1_uc011dmu.1_Missense_Mutation_p.R165C|DDR1_uc003nrv.2_Missense_Mutation_p.R165C|DDR1_uc003nrw.1_5'Flank|DDR1_uc003nry.1_5'Flank|DDR1_uc003nrx.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	165	Extracellular (Potential).|F5/8 type C.			R -> H (in Ref. 14; AAH70070).	cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CCGACTGGTTCGCTTCTACCC	0.632													28	70					0	0	0.001512	0	0
BAT2	7916	broad.mit.edu	37	6	31594881	31594881	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:31594881C>T	uc003nvb.3	+	11	1445	c.1196C>T	c.(1195-1197)CCA>CTA	p.P399L	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Missense_Mutation_p.P399L	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	399	4 X 57 AA type A repeats.|2 X type B repeats.|2-1.					cytoplasm|nucleus	protein binding				0						TCTCGGCCTCCAGAGACAGAG	0.677													16	31					0	0	0.004007	0	0
PSMB8	5696	broad.mit.edu	37	6	32809404	32809404	+	Missense_Mutation	SNP	G	A	A	rs146956608		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:32809404G>A	uc003oce.2	-	5	689	c.646C>T	c.(646-648)CGG>TGG	p.R216W	TAP2_uc011dqf.1_5'Flank|TAP2_uc003ocb.1_5'Flank|TAP2_uc003ocd.2_5'Flank|PSMB8_uc003ocf.2_Missense_Mutation_p.R212W	NM_148919	NP_683720	P28062	PSB8_HUMAN	proteasome beta 8 subunit isoform E2 proprotein	216					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|type I interferon-mediated signaling pathway|viral reproduction	cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			skin(1)	1						AGATTAGGCCGATAGCCACTG	0.512													63	150					0	0	0.003610	0	0
IP6K3	117283	broad.mit.edu	37	6	33690634	33690635	+	Missense_Mutation	DNP	GG	AA	AA	rs146926476	byFrequency	TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:33690634_33690635GG>AA	uc010jvf.2	-	7	1631_1632	c.1095_1096CC>TT	c.(1093-1098)ATCCGC>ATTTGC	p.R366C	IP6K3_uc003ofb.2_Missense_Mutation_p.R366C	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	366					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						TCAATCATGCGGATGTCAACCT	0.569													43	90					0	0	0.004672	0	0
ENPP4	22875	broad.mit.edu	37	6	46107915	46107915	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:46107915G>A	uc003oxy.2	+	2	854	c.595G>A	c.(595-597)GAT>AAT	p.D199N		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	199	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						CGGACCTGAAGATAAAGAAAA	0.383													36	31					0	0	0.004289	0	0
COL21A1	81578	broad.mit.edu	37	6	56035873	56035873	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:56035873C>T	uc003pcs.2	-	4	926	c.694G>A	c.(694-696)GAT>AAT	p.D232N	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.D232N|COL21A1_uc003pcu.1_Missense_Mutation_p.D232N	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	232	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			AAAAGAATATCAAATCCCCTT	0.313													30	81					0	0	0.006320	0	0
DST	667	broad.mit.edu	37	6	56500494	56500494	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:56500494C>T	uc003pdf.2	-	23	3008	c.2980G>A	c.(2980-2982)GAA>AAA	p.E994K	DST_uc003pcz.3_Missense_Mutation_p.E816K|DST_uc011dxj.1_Missense_Mutation_p.E845K|DST_uc011dxk.1_Missense_Mutation_p.E856K|DST_uc003pcy.3_Missense_Mutation_p.E490K|DST_uc003pdb.2_Missense_Mutation_p.E490K|DST_uc003pdc.3_Missense_Mutation_p.E490K|DST_uc003pdd.3_Missense_Mutation_p.E490K	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	816					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TCAGTAGCTTCTTTGGCATCA	0.398													21	20					0	0	0.002299	0	0
BAI3	577	broad.mit.edu	37	6	70070960	70070960	+	Silent	SNP	T	G	G			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:70070960T>G	uc003pev.3	+	29	4243	c.3795T>G	c.(3793-3795)CTT>CTG	p.L1265L	BAI3_uc010kak.2_Silent_p.L1265L|BAI3_uc011dxx.1_Silent_p.L471L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1265	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TGAATGAGCTTAGCAATCCAT	0.418													23	34					0	0	0.001882	0	0
FAM135A	57579	broad.mit.edu	37	6	71235823	71235823	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:71235823C>T	uc003pfj.2	+	13	3169	c.3036C>T	c.(3034-3036)ATC>ATT	p.I1012I	FAM135A_uc003pfi.2_Silent_p.I816I|FAM135A_uc003pfh.2_Silent_p.I799I|FAM135A_uc003pfl.2_Silent_p.I679I|FAM135A_uc003pfn.2_Silent_p.I218I|FAM135A_uc003pfo.1_Silent_p.I383I|FAM135A_uc010kan.1_5'Flank	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	1012										central_nervous_system(1)	1						ATTCAGAAATCCCTACAGTTG	0.338													15	49					0	0	0.003163	0	0
FHL5	9457	broad.mit.edu	37	6	97052625	97052625	+	Splice_Site	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:97052625G>A	uc003pos.1	+	4	565	c.160_splice	c.e4-1	p.D54_splice	FHL5_uc003pot.1_Splice_Site_p.D54_splice	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator							nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		CTGTCTCAAAGGATCTTTGTT	0.413													34	36					0	0	0.003271	0	0
QRSL1	55278	broad.mit.edu	37	6	107102635	107102635	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:107102635G>A	uc003prm.2	+	8	996	c.880G>A	c.(880-882)GTA>ATA	p.V294I		NM_018292	NP_060762	Q9H0R6	QRSL1_HUMAN	glutaminyl-tRNA synthase	294					translation		ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor				0	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;0.00768)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.248)	Epithelial(6;0.000334)|all cancers(7;0.00157)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0152)	BRCA - Breast invasive adenocarcinoma(108;0.118)|all cancers(137;0.167)|Epithelial(106;0.176)		ATCAAGTGAAGTACAGTCTCT	0.358													24	30					0	0	0.006320	0	0
DSE	29940	broad.mit.edu	37	6	116757797	116757798	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:116757797_116757798CC>TT	uc003pws.2	+	6	2360_2361	c.2166_2167CC>TT	c.(2164-2169)GACCGG>GATTGG	p.R723W	DSE_uc011ebg.1_Missense_Mutation_p.R742W|DSE_uc003pwt.2_Missense_Mutation_p.R723W|DSE_uc003pwu.2_Missense_Mutation_p.R390W	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	723					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		TTCTGTTTGACCGGAATTCAGC	0.49													37	60					0	0	0.004672	0	0
FAM184A	79632	broad.mit.edu	37	6	119301317	119301317	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:119301317C>T	uc003pyj.2	-	10	2635	c.2287G>A	c.(2287-2289)GAA>AAA	p.E763K	FAM184A_uc003pyk.3_Missense_Mutation_p.E643K|FAM184A_uc003pyl.3_Missense_Mutation_p.E643K	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	763	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						TGCTCCTTTTCCTTTTCCTCT	0.313													25	58					0	0	0.004656	0	0
TMEM200A	114801	broad.mit.edu	37	6	130761744	130761744	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:130761744C>T	uc003qca.2	+	3	1048	c.177C>T	c.(175-177)TCC>TCT	p.S59S	TMEM200A_uc010kfh.2_Silent_p.S59S|TMEM200A_uc010kfi.2_Silent_p.S59S|TMEM200A_uc003qcb.2_Silent_p.S59S	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	59	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GGCTTTATTCCCCATCTGGTT	0.478													64	78					0	0	0.003610	0	0
TMEM200A	114801	broad.mit.edu	37	6	130761981	130761981	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:130761981C>T	uc003qca.2	+	3	1285	c.414C>T	c.(412-414)TTC>TTT	p.F138F	TMEM200A_uc010kfh.2_Silent_p.F138F|TMEM200A_uc010kfi.2_Silent_p.F138F|TMEM200A_uc003qcb.2_Silent_p.F138F	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	138	Helical; (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		TTGGCATTTTCATTTTCATTT	0.413													40	40					0	0	0.005524	0	0
CTAGE9	643854	broad.mit.edu	37	6	132032151	132032151	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:132032151C>T	uc011ece.1	-	1	7	c.7G>A	c.(7-9)GAG>AAG	p.E3K	ENPP3_uc003qcu.3_Intron|ENPP3_uc010kfq.2_Intron|ENPP3_uc003qcv.2_Intron	NM_001145659	NP_001139131	A4FU28	CTGE9_HUMAN	CTAGE family, member 4-like	3						integral to membrane					0						GCACCAGGCTCCTCCATAGCG	0.607													19	18					0	0	0.001523	0	0
ALDH8A1	64577	broad.mit.edu	37	6	135250247	135250247	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:135250247G>A	uc003qew.2	-	6	1009	c.956C>T	c.(955-957)CCC>CTC	p.P319L	ALDH8A1_uc003qex.2_Intron|ALDH8A1_uc010kgh.2_Intron|ALDH8A1_uc011ecx.1_Missense_Mutation_p.P269L	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	319					retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		TGGATCAGAGGGAATGCCGAC	0.383													29	40					0	0	0.001512	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599532	136599532	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:136599532C>T	uc003qgx.1	-	4	740	c.487G>A	c.(487-489)GAA>AAA	p.E163K	BCLAF1_uc003qgw.1_Missense_Mutation_p.E163K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E161K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E161K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	163					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GTTTGTTTTTCCTGAGACCCT	0.433													32	225					0	0	0.002096	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599868	136599868	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:136599868G>A	uc003qgx.1	-	4	404	c.151C>T	c.(151-153)CGT>TGT	p.R51C	BCLAF1_uc003qgw.1_Missense_Mutation_p.R51C|BCLAF1_uc003qgy.1_Missense_Mutation_p.R49C|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.R49C	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	51					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GAATACATACGATCTCTACTA	0.373													16	71					0	0	0.004990	0	0
TNFAIP3	7128	broad.mit.edu	37	6	138196929	138196929	+	Silent	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:138196929T>C	uc003qhr.2	+	4	657	c.591T>C	c.(589-591)TTT>TTC	p.F197F	TNFAIP3_uc003qhs.2_Silent_p.F197F	NM_006290	NP_006281	P21580	TNAP3_HUMAN	tumor necrosis factor, alpha-induced protein 3	197	TRAF-binding.|OTU.				anti-apoptosis|apoptosis|B-1 B cell homeostasis|negative regulation of B cell activation|negative regulation of bone resorption|negative regulation of CD40 signaling pathway|negative regulation of endothelial cell apoptosis|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of inflammatory response|negative regulation of interleukin-2 production|negative regulation of interleukin-6 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of osteoclast proliferation|negative regulation of protein ubiquitination|negative regulation of smooth muscle cell proliferation|negative regulation of toll-like receptor 2 signaling pathway|negative regulation of toll-like receptor 3 signaling pathway|negative regulation of tumor necrosis factor production|negative regulation of type I interferon production|positive regulation of protein catabolic process|protein K48-linked ubiquitination|protein K63-linked deubiquitination|protein oligomerization|regulation of defense response to virus by host|regulation of germinal center formation|regulation of vascular wound healing|tolerance induction to lipopolysaccharide	centrosome|cytosol|nucleus	caspase inhibitor activity|DNA binding|protease binding|protein self-association|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-protein ligase activity|ubiquitin-specific protease activity|zinc ion binding	p.0?(22)		haematopoietic_and_lymphoid_tissue(133)|lung(3)|ovary(1)	137	Breast(32;0.135)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000849)|OV - Ovarian serous cystadenocarcinoma(155;0.00468)		TACACATATTTGTCCTTTGCA	0.443			D|N|F		marginal zone B-cell lymphomas|Hodgkin's lymphoma|primary mediastinal B cell lymphoma								45	67					0	0	0.003214	0	0
PDE10A	10846	broad.mit.edu	37	6	165809885	165809885	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:165809885G>A	uc003qun.2	-	15	1553	c.1312C>T	c.(1312-1314)CAT>TAT	p.H438Y	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.H368Y|PDE10A_uc003quo.2_Missense_Mutation_p.H448Y	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	438					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	CAAATGCTATGGTAGGACAGC	0.418													65	77					0	0	0.003610	0	0
UNC93A	54346	broad.mit.edu	37	6	167719405	167719405	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr6:167719405C>T	uc003qvq.2	+	6	1018	c.843C>T	c.(841-843)TCC>TCT	p.S281S	UNC93A_uc003qvr.2_Silent_p.S239S	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	281						integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CTCCCCAGTCCTATGTCACCT	0.592													92	281					0	0	0.003610	0	0
IQCE	23288	broad.mit.edu	37	7	2645531	2645531	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:2645531C>T	uc003smo.3	+	20	1949	c.1765C>T	c.(1765-1767)CCG>TCG	p.P589S	IQCE_uc003sml.1_Missense_Mutation_p.P589S|IQCE_uc011jvy.1_Missense_Mutation_p.P573S|IQCE_uc011jvz.1_Missense_Mutation_p.P524S|IQCE_uc003smk.3_Missense_Mutation_p.P573S|IQCE_uc003smn.3_Missense_Mutation_p.P524S	NM_152558	NP_689771	Q6IPM2	IQCE_HUMAN	IQ motif containing E isoform 1	589											0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.23e-13)		GCCCCGCGTTCCGAGCCCCAT	0.697													10	16					0	0	0.001368	0	0
FZD9	8326	broad.mit.edu	37	7	72849830	72849830	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:72849830C>T	uc003tyb.2	+	1	1722	c.1493C>T	c.(1492-1494)TCG>TTG	p.S498L		NM_003508	NP_003499	O00144	FZD9_HUMAN	frizzled 9 precursor	498	Extracellular (Potential).				B cell differentiation|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|neuroblast proliferation|vasculature development	cell surface|filopodium membrane|integral to membrane|perinuclear region of cytoplasm	G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				AGGGACTGCTCGCTGCCAGGG	0.657													15	13					0	0	0.002450	0	0
SRRM3	222183	broad.mit.edu	37	7	75877512	75877512	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:75877512G>A	uc010ldi.2	+	3	449	c.240G>A	c.(238-240)TCG>TCA	p.S80S		NM_001110199	NP_001103669			serine/arginine repetitive matrix 3												0						GCAGGTATTCGGAGGAGGAGA	0.637													9	12					0	0	0.006214	0	0
FGL2	10875	broad.mit.edu	37	7	76825931	76825931	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:76825931G>A	uc003ugb.2	-	2	1025	c.985C>T	c.(985-987)CGT>TGT	p.R329C	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	329	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						ACGTGTAAACGATATTTGAGA	0.358													29	73					0	0	0.006320	0	0
PCLO	27445	broad.mit.edu	37	7	82544898	82544898	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:82544898C>T	uc003uhx.2	-	7	12693	c.12404G>A	c.(12403-12405)GGG>GAG	p.G4135E	PCLO_uc003uhv.2_Missense_Mutation_p.G4135E|PCLO_uc010lec.2_Missense_Mutation_p.G1100E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4066					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCTCTCTGTCCCTCTACGAAA	0.403													27	63					0	0	0.007291	0	0
PCLO	27445	broad.mit.edu	37	7	82585613	82585613	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:82585613C>T	uc003uhx.2	-	5	4945	c.4656G>A	c.(4654-4656)GAG>GAA	p.E1552E	PCLO_uc003uhv.2_Silent_p.E1552E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1483					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGAAGTCCTCCTCTTCCCCTG	0.413													35	53					0	0	0.003755	0	0
PCLO	27445	broad.mit.edu	37	7	82764658	82764658	+	Silent	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:82764658T>C	uc003uhx.2	-	3	2497	c.2208A>G	c.(2206-2208)AAA>AAG	p.K736K	PCLO_uc003uhv.2_Silent_p.K736K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	682	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGAAGGTTCTTTGGGAGGGG	0.527													19	45					0	0	0.006122	0	0
CYP3A43	64816	broad.mit.edu	37	7	99445222	99445222	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:99445222G>A	uc003urx.1	+	5	533	c.430G>A	c.(430-432)GAA>AAA	p.E144K	CYP3A43_uc003ury.1_Missense_Mutation_p.E144K|CYP3A43_uc003urz.1_Missense_Mutation_p.E144K|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Intron|CYP3A43_uc003usb.1_5'UTR	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	144			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	AAAATTCAAGGAAGTAAGAAA	0.348													29	68					0	0	0.006320	0	0
ZAN	7455	broad.mit.edu	37	7	100369601	100369601	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:100369601C>T	uc003uwj.2	+	29	5548	c.5383C>T	c.(5383-5385)CAG>TAG	p.Q1795*	ZAN_uc003uwk.2_Nonsense_Mutation_p.Q1795*|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Nonsense_Mutation_p.Q372*|ZAN_uc011kke.1_5'Flank	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1795	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCTGTGTGCCCAGGCTGGCCA	0.652													5	19					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	7	100607746	100607746	+	RNA	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:100607746G>A	uc003uxk.1	+	4		c.2277G>A			uc003uxl.1_Silent_p.R531R|uc003uxm.1_Intron|uc003uxn.1_Intron|uc010lhn.1_5'Flank					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		GACCCCTCAGGAATGGCAGCA	0.597													19	99					0	0	0.003330	0	0
MUC17	140453	broad.mit.edu	37	7	100679474	100679474	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:100679474C>T	uc003uxp.1	+	3	4830	c.4777C>T	c.(4777-4779)CTT>TTT	p.L1593F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1593	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|24.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GGCTAACACCCTTTCAACAAC	0.488													63	143					0	0	0.003610	0	0
PLXNA4	91584	broad.mit.edu	37	7	131982905	131982905	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:131982905C>T	uc003vra.3	-	4	1677	c.1448G>A	c.(1447-1449)CGG>CAG	p.R483Q		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	483	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GGCCATATCCCGGAGGACTGG	0.577													10	61					0	0	0.000673	0	0
KIAA1549	57670	broad.mit.edu	37	7	138545958	138545958	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:138545958G>A	uc011kql.1	-	16	5223	c.5174C>T	c.(5173-5175)TCC>TTC	p.S1725F	KIAA1549_uc011kqi.1_Missense_Mutation_p.S509F|KIAA1549_uc003vuk.3_Missense_Mutation_p.S1675F|KIAA1549_uc011kqj.1_Missense_Mutation_p.S1725F|KIAA1549_uc011kqk.1_Missense_Mutation_p.S509F	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1725						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CTCTTCCTGGGAAGGGGTGCT	0.652			O	BRAF	pilocytic astrocytoma								23	49					0	0	0.003330	0	0
DENND2A	27147	broad.mit.edu	37	7	140301627	140301627	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:140301627G>A	uc010lnj.2	-	1	716	c.571C>T	c.(571-573)CCT>TCT	p.P191S	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.P191S|DENND2A_uc003vvw.2_Missense_Mutation_p.P191S|DENND2A_uc003vvx.2_Missense_Mutation_p.P191S	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	191										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TTGTCAGGAGGGCAGTGTGGG	0.617													31	47					0	0	0.001786	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				17	35					0	0	0.004672	0	0
PRSS37	136242	broad.mit.edu	37	7	141536273	141536273	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:141536273G>A	uc003vws.1	-	5	1002	c.630C>T	c.(628-630)TTC>TTT	p.F210F	PRSS37_uc011krk.1_Silent_p.F197F|PRSS37_uc011krl.1_Silent_p.F209F|PRSS37_uc003vwt.1_Silent_p.F197F	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	210	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						CCCCTCCCATGAAGTGCCCCA	0.458													20	42					0	0	0.001523	0	0
TRPV5	56302	broad.mit.edu	37	7	142612720	142612720	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:142612720C>T	uc003wby.1	-	9	1405	c.1141G>A	c.(1141-1143)GAA>AAA	p.E381K		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	381	Extracellular (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					ATGATATCTTCACGTGTCTCA	0.527													6	20					0	0	0.001984	0	0
KEL	3792	broad.mit.edu	37	7	142638489	142638489	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr7:142638489C>T	uc003wcb.2	-	19	2259	c.2049G>A	c.(2047-2049)AGG>AGA	p.R683R		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	683	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GGCTGGGCTTCCTACACATCA	0.607													35	62					0	0	0.005524	0	0
CSMD1	64478	broad.mit.edu	37	8	2815219	2815219	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:2815219T>C	uc011kwk.1	-	63	10206	c.9816A>G	c.(9814-9816)ATA>ATG	p.I3272M	CSMD1_uc011kwj.1_Missense_Mutation_p.I2601M|CSMD1_uc010lrg.2_Missense_Mutation_p.I1163M	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3272	Extracellular (Potential).|Sushi 27.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CACACTTACGTATACATTCGG	0.413													6	4					0	0	0.001984	0	0
CSMD1	64478	broad.mit.edu	37	8	3855558	3855558	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:3855558C>T	uc011kwk.1	-	5	1075	c.685G>A	c.(685-687)GAG>AAG	p.E229K		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	229	Extracellular (Potential).|CUB 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCGTTGTTCTCGTACTCTGAA	0.562													7	1					0	0	0.003080	0	0
ADAM18	8749	broad.mit.edu	37	8	39468132	39468132	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:39468132G>A	uc003xni.2	+	6	429	c.429G>A	c.(427-429)ATG>ATA	p.M143I	ADAM18_uc003xnh.2_Missense_Mutation_p.M143I|ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Missense_Mutation_p.M143I	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	143					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TTTATCAAATGAAAAATAATG	0.333													32	10					0	0	0.002096	0	0
PXDNL	137902	broad.mit.edu	37	8	52321172	52321172	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:52321172G>A	uc003xqu.3	-	17	3113	c.3012C>T	c.(3010-3012)ATC>ATT	p.I1004I	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1004					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CCGCGCCCACGATCTTCCTGG	0.622													13	1					0	0	0.001855	0	0
JPH1	56704	broad.mit.edu	37	8	75227730	75227730	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:75227730C>A	uc003yae.2	-	2	545	c.505G>T	c.(505-507)GAG>TAG	p.E169*	JPH1_uc003yaf.2_Nonsense_Mutation_p.E169*|JPH1_uc003yag.1_Nonsense_Mutation_p.E33*	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	169	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			TTGCTCTGCTCGCTGCGCAGC	0.711													10	5					0.000978159	0.0015884	0.000978	1	0
CNGB3	54714	broad.mit.edu	37	8	87755845	87755845	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:87755845G>A	uc003ydx.2	-	1	57	c.11C>T	c.(10-12)TCG>TTG	p.S4L		NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	4	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TTTTGTCAGCGATTTAAACAT	0.393													59	24					0	0	0.003610	0	0
RBM12B	389677	broad.mit.edu	37	8	94746582	94746582	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:94746582G>A	uc003yfz.2	-	3	2250	c.2057C>T	c.(2056-2058)CCT>CTT	p.P686L		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	686							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			TCCCTGAAGAGGCCGCCTAAA	0.622													128	42					0	0	0.003610	0	0
CDH17	1015	broad.mit.edu	37	8	95201422	95201422	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:95201422A>T	uc003ygh.2	-	3	268	c.143T>A	c.(142-144)ATA>AAA	p.I48K	CDH17_uc011lgo.1_Missense_Mutation_p.I48K|CDH17_uc011lgp.1_Missense_Mutation_p.I48K	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	48	Extracellular (Potential).|Cadherin 1.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			TACCTGGAATATAATTTGACT	0.388													45	16					0	0	0.003610	0	0
LAPTM4B	55353	broad.mit.edu	37	8	98831371	98831371	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:98831371C>T	uc003yia.2	+	5	841	c.685C>T	c.(685-687)CCT>TCT	p.P229S	LAPTM4B_uc010mbg.2_Intron	NM_018407	NP_060877	Q86VI4	LAP4B_HUMAN	lysosomal associated transmembrane protein 4	282					transport	endomembrane system|integral to membrane	protein binding			skin(1)	1	Breast(36;1.59e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.149)			TTTGCAGCCTCCTAATTTTCC	0.378													79	21					0	0	0.003610	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110447565	110447565	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:110447565G>A	uc003yne.2	+	29	3591	c.3487G>A	c.(3487-3489)GAT>AAT	p.D1163N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1163	Extracellular (Potential).|IPT/TIG 5.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TATCTGGCCTGATTCTGGAAG	0.433										HNSCC(38;0.096)			222	56					0	0	0.003610	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110497275	110497275	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:110497275G>T	uc003yne.2	+	58	9683	c.9579G>T	c.(9577-9579)GAG>GAT	p.E3193D		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3193	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTCTAAGGAGGGAGAAGAGA	0.279										HNSCC(38;0.096)			34	10					1.21669e-08	1.98653e-08	0.003271	1	0
TRPS1	7227	broad.mit.edu	37	8	116632016	116632016	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:116632016G>A	uc003ynz.2	-	2	729	c.270C>T	c.(268-270)AGC>AGT	p.S90S	TRPS1_uc011lhy.1_Silent_p.S94S|TRPS1_uc003yny.2_Silent_p.S103S|TRPS1_uc010mcy.2_Silent_p.S90S	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	90					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			CCTTACTGGGGCTTTCATAAT	0.478									Langer-Giedion_syndrome				91	24					0	0	0.003610	0	0
COL22A1	169044	broad.mit.edu	37	8	139774709	139774709	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr8:139774709C>T	uc003yvd.2	-	17	2251	c.1804G>A	c.(1804-1806)GGA>AGA	p.G602R	COL22A1_uc011ljo.1_5'Flank	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	602	Pro-rich.|Gly-rich.|Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCTCGCTCTCCCTGGCAAAAG	0.582										HNSCC(7;0.00092)			34	12					0	0	0.003271	0	0
PTPRD	5789	broad.mit.edu	37	9	8341825	8341825	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:8341825G>A	uc003zkk.2	-	39	5526	c.4815C>T	c.(4813-4815)ATC>ATT	p.I1605I	PTPRD_uc003zkp.2_Silent_p.I1199I|PTPRD_uc003zkq.2_Silent_p.I1198I|PTPRD_uc003zkr.2_Silent_p.I1189I|PTPRD_uc003zks.2_Silent_p.I1198I|PTPRD_uc003zkl.2_Silent_p.I1596I|PTPRD_uc003zkm.2_Silent_p.I1592I|PTPRD_uc003zkn.2_Silent_p.I1194I|PTPRD_uc003zko.2_Silent_p.I1195I	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1605	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTGCATCATGGATAAAGATGT	0.388										TSP Lung(15;0.13)			79	104					0	0	0.003610	0	0
DENND4C	55667	broad.mit.edu	37	9	19346438	19346438	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:19346438C>T	uc003znq.2	+	18	2849	c.2816C>T	c.(2815-2817)TCC>TTC	p.S939F	DENND4C_uc011lnc.1_Missense_Mutation_p.S269F|DENND4C_uc011lnd.1_Missense_Mutation_p.S227F|DENND4C_uc003znr.2_Missense_Mutation_p.S227F|DENND4C_uc003zns.2_Missense_Mutation_p.S121F|DENND4C_uc003znt.2_Missense_Mutation_p.S121F	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	939						integral to membrane				ovary(1)|skin(1)	2						AAAACAGTATCCAAAGATCTG	0.383													16	41					0	0	0.006122	0	0
PRSS3	5646	broad.mit.edu	37	9	33797909	33797909	+	Missense_Mutation	SNP	C	T	T	rs142082180		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:33797909C>T	uc003ztj.3	+	3	454	c.454C>T	c.(454-456)CGC>TGC	p.R152C	uc003ztk.1_Intron|PRSS3_uc003zti.3_Missense_Mutation_p.R109C|PRSS3_uc003ztl.3_Missense_Mutation_p.R95C	NM_007343	NP_031369	P35030	TRY3_HUMAN	mesotrypsin isoform 1 preproprotein	152	Peptidase S1.				digestion|endothelial cell migration|zymogen activation	extracellular space	calcium ion binding|protein binding|serine-type endopeptidase activity|serine-type peptidase activity				0			LUSC - Lung squamous cell carcinoma(29;0.0176)			CAAGATCATCCGCCACCCTAA	0.547													38	20					0	0	0.004878	0	0
TPM2	7169	broad.mit.edu	37	9	35685757	35685757	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:35685757G>A	uc003zxq.2	-	3	500	c.261C>T	c.(259-261)TCC>TCT	p.S87S	TPM2_uc003zxr.2_Silent_p.S87S|TPM2_uc003zxs.2_Silent_p.S87S|TPM2_uc010mkz.2_Silent_p.S87S|TPM2_uc011lpa.1_Silent_p.S87S	NM_213674	NP_998839	P07951	TPM2_HUMAN	tropomyosin 2 (beta) isoform 2	87	By similarity.				muscle filament sliding|regulation of ATPase activity	cytosol|muscle thin filament tropomyosin	actin binding|structural constituent of muscle			ovary(1)	1	all_epithelial(49;0.121)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GGCGGTTCAGGGAGGCCACAT	0.622													40	23					0	0	0.002852	0	0
C9orf79	286234	broad.mit.edu	37	9	90501864	90501865	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:90501864_90501865CC>TT	uc004app.3	+	4	2497_2498	c.2462_2463CC>TT	c.(2461-2463)TCC>TTT	p.S821F	C9orf79_uc004apo.1_Missense_Mutation_p.S633F	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	821						integral to membrane				ovary(3)	3						GTGAACACCTCCCAGGAGCTTT	0.569													22	40					0	0	0.004672	0	0
FAM75C1	441452	broad.mit.edu	37	9	90534220	90534220	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:90534220G>A	uc010mqi.2	+	2	269	c.240G>A	c.(238-240)CGG>CGA	p.R80R	FAM75C1_uc004apq.3_Silent_p.R63R	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CAACAGGGCGGAGGGGGAGGC	0.572													27	94					0	0	0.001512	0	0
Unknown	0	broad.mit.edu	37	9	90746581	90746581	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:90746581C>T	uc011lti.1	-	4	1400	c.1371G>A	c.(1369-1371)ATG>ATA	p.M457I						SubName: Full=cDNA FLJ59639;																		CACGTTGCCCCATGTGTTGCT	0.537													35	97					0	0	0.004878	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375576	93375576	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:93375576G>A	uc004aqx.1	-	2	645	c.534C>T	c.(532-534)ATC>ATT	p.I178I		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	178					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						TTTTCCCGTCGATCTGGAGAC	0.547													40	37					0	0	0.006230	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112899797	112899797	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:112899797T>C	uc004bei.2	+	9	2861	c.2669T>C	c.(2668-2670)TTA>TCA	p.L890S	PALM2-AKAP2_uc004bek.3_Missense_Mutation_p.L658S|PALM2-AKAP2_uc004bej.3_Missense_Mutation_p.L658S|PALM2-AKAP2_uc004bel.1_Missense_Mutation_p.L468S|AKAP2_uc011lwi.1_Missense_Mutation_p.L516S|AKAP2_uc004bem.2_Missense_Mutation_p.L516S|PALM2-AKAP2_uc010mtw.1_Missense_Mutation_p.L476S|AKAP2_uc011lwj.1_Missense_Mutation_p.L427S|PALM2-AKAP2_uc004ben.2_Missense_Mutation_p.L427S	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	427							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						CGTGGGCCCTTATCTAAACTG	0.577													42	72					0	0	0.002852	0	0
DFNB31	25861	broad.mit.edu	37	9	117168831	117168831	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:117168831G>A	uc004biz.3	-	9	2689	c.2040C>T	c.(2038-2040)TTC>TTT	p.F680F	DFNB31_uc004bix.2_Silent_p.F329F|DFNB31_uc004biy.3_Silent_p.F297F|DFNB31_uc004bja.3_Silent_p.F680F	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	680	Pro-rich.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GGACCCGTGGGAAGGGGCCGA	0.677													33	94					0	0	0.003755	0	0
CRB2	286204	broad.mit.edu	37	9	126132428	126132428	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:126132428C>T	uc004bnx.1	+	7	1188	c.1096C>T	c.(1096-1098)CCC>TCC	p.P366S	CRB2_uc004bnw.1_Missense_Mutation_p.P366S	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	366	Extracellular (Potential).|EGF-like 8; calcium-binding (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CCTGTCGGATCCCTGCCTGCA	0.577													20	81					0	0	0.001882	0	0
TTC16	158248	broad.mit.edu	37	9	130489606	130489606	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:130489606G>A	uc004brq.1	+	12	1693	c.1626G>A	c.(1624-1626)TGG>TGA	p.W542*	PTRH1_uc011mah.1_5'Flank|TTC16_uc011mai.1_Nonsense_Mutation_p.W529*|TTC16_uc004brr.1_Nonsense_Mutation_p.W392*|TTC16_uc010mxn.1_Nonsense_Mutation_p.W138*	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	542							binding				0						AGCACTCATGGAAGCAGGGGG	0.612													9	24					0	0	0.000673	0	0
DNM1	1759	broad.mit.edu	37	9	130984863	130984863	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:130984863C>T	uc011mau.1	+	8	1203	c.1116C>T	c.(1114-1116)TTC>TTT	p.F372F	DNM1_uc010mxr.2_Silent_p.F372F|DNM1_uc011mat.1_Silent_p.F372F	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	372					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						GCTTCCCTTTCGAGCTGGTCA	0.587													53	66					0	0	0.003610	0	0
C9orf119	375757	broad.mit.edu	37	9	131038524	131038524	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:131038524C>T	uc004bup.2	+	1	100	c.100C>T	c.(100-102)CCT>TCT	p.P34S	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.P34S	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	34					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						GGCCGGCTTTCCTTGGGTGCG	0.682													11	18					0	0	0.000673	0	0
CERCAM	51148	broad.mit.edu	37	9	131198142	131198142	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:131198142C>T	uc004buz.3	+	12	2144	c.1746C>T	c.(1744-1746)AGC>AGT	p.S582S	CERCAM_uc004buy.1_Silent_p.S504S|CERCAM_uc010mxz.2_Silent_p.S504S	NM_016174	NP_057258	Q5T4B2	GT253_HUMAN	cerebral endothelial cell adhesion molecule 1	582					cellular component movement|leukocyte cell-cell adhesion|lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen|plasma membrane				pancreas(1)	1						TGACTGGCAGCAGCGGGCACA	0.667													4	13					0	0	0.000602	0	0
CCBL1	883	broad.mit.edu	37	9	131600339	131600339	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:131600339G>A	uc004bwh.2	-	5	614	c.429C>T	c.(427-429)TCC>TCT	p.S143S	CCBL1_uc004bwf.2_Silent_p.S177S|CCBL1_uc004bwg.2_RNA|CCBL1_uc010myn.2_Silent_p.S143S|CCBL1_uc004bwj.2_Silent_p.S93S|CCBL1_uc011mbl.1_Silent_p.S237S|CCBL1_uc004bwi.2_RNA|CCBL1_uc010myo.2_Silent_p.S143S	NM_004059	NP_004050	Q16773	KAT1_HUMAN	kynurenine aminotransferase I isoform a	143					kynurenine metabolic process|L-phenylalanine catabolic process|tryptophan catabolic process	cytosol|nucleus	1-aminocyclopropane-1-carboxylate synthase activity|cysteine-S-conjugate beta-lyase activity|glutamine-phenylpyruvate transaminase activity|kynurenine-oxoglutarate transaminase activity|L-glutamine:pyruvate aminotransferase activity|L-phenylalanine:pyruvate aminotransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamine(DB00130)|Pyridoxal Phosphate(DB00114)	CCGGCTTCAGGGACACAAACA	0.522													98	118					0	0	0.003610	0	0
LRRC8A	56262	broad.mit.edu	37	9	131671143	131671143	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:131671143T>C	uc004bwl.3	+	3	1954	c.1700T>C	c.(1699-1701)GTG>GCG	p.V567A	LRRC8A_uc010myp.2_Missense_Mutation_p.V567A|LRRC8A_uc010myq.2_Missense_Mutation_p.V567A	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	567	LRR 8.				pre-B cell differentiation	integral to membrane					0						GATGTGGGCGTGCACCTGCAG	0.577													3	47					0	0	0.004672	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134464268	134464268	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:134464268G>A	uc004cbc.2	-	17	2545	c.2415C>T	c.(2413-2415)ATC>ATT	p.I805I	RAPGEF1_uc004cbb.2_Silent_p.I823I	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	805	N-terminal Ras-GEF.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		CCTTGTCCAGGATGTTCTTCC	0.612													22	18					0	0	0.002780	0	0
ENTPD2	954	broad.mit.edu	37	9	139945979	139945979	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr9:139945979C>T	uc004ckw.1	-	3	425	c.369G>A	c.(367-369)GCG>GCA	p.A123A	ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Silent_p.A123A	NM_203468	NP_982293	Q9Y5L3	ENTP2_HUMAN	ectonucleoside triphosphate diphosphohydrolase 2	123	Extracellular (Potential).					integral to membrane	ATP binding				0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GGCGCATACCCGCTGTGGCTC	0.642													11	41					0	0	0.000978	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999147	27999147	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:27999147T>C	uc004dbx.1	-	1	420	c.305A>G	c.(304-306)GAG>GGG	p.E102G		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	102	Glu-rich.									ovary(3)|skin(1)	4						ttcttcttcctcctccCTTTC	0.373													31	12					0	0	0.002096	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999149	27999149	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:27999149C>T	uc004dbx.1	-	1	418	c.303G>A	c.(301-303)GAG>GAA	p.E101E		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	101	Glu-rich.									ovary(3)|skin(1)	4						cttcttcctcctccCTTTCTG	0.368													33	13					0	0	0.003271	0	0
MAGEB3	4114	broad.mit.edu	37	X	30254464	30254464	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:30254464C>T	uc004dca.1	+	5	1160	c.423C>T	c.(421-423)GTC>GTT	p.V141V		NM_002365	NP_002356	O15480	MAGB3_HUMAN	melanoma antigen family B, 3	141	MAGE.										0						TAAAAATTGTCCAAAAAAGCC	0.358													21	7					0	0	0.001523	0	0
CCNB3	85417	broad.mit.edu	37	X	50051948	50051948	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:50051948C>T	uc004dox.3	+	6	1077	c.779C>T	c.(778-780)TCC>TTC	p.S260F	CCNB3_uc004doy.2_Missense_Mutation_p.S260F|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	260					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GAAGAGGATTCCTTCTTTATG	0.403													36	19					0	0	0.003755	0	0
SHROOM4	57477	broad.mit.edu	37	X	50345803	50345803	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:50345803G>A	uc004dpe.2	-	7	3798	c.3772C>T	c.(3772-3774)CAG>TAG	p.Q1258*	SHROOM4_uc004dpd.3_RNA	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	1258	ASD2.				actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					GAAAAGTGCTGAAACTCTTGT	0.448													21	7					0	0	0.001882	0	0
CYLC1	1538	broad.mit.edu	37	X	83129493	83129493	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:83129493G>A	uc004eei.1	+	4	1798	c.1777G>A	c.(1777-1779)GAA>AAA	p.E593K	CYLC1_uc004eeh.1_Missense_Mutation_p.E592K	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	593					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						TGAAAAAGGGGAAAAAGCAAG	0.423													13	1					0	0	0.001368	0	0
TMEM35	59353	broad.mit.edu	37	X	100349606	100349606	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:100349606G>A	uc004egw.2	+	2	321	c.165G>A	c.(163-165)AAG>AAA	p.K55K		NM_021637	NP_067650	Q53FP2	TMM35_HUMAN	transmembrane protein 35	55						cytoplasmic membrane-bounded vesicle|integral to membrane|peroxisomal membrane					0						CTCTGCTGAAGAAAATGGGGA	0.453													47	11					0	0	0.003610	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450652	105450652	+	Silent	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:105450652G>A	uc004emf.1	+	4	1876	c.1227G>A	c.(1225-1227)GTG>GTA	p.V409V	MUM1L1_uc004emg.1_Silent_p.V409V	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	409	PWWP.									ovary(2)|pancreas(1)|skin(1)	4						GGCCAGCAGTGATAAAAAGTA	0.348													9	5					0	0	0.006214	0	0
MUM1L1	139221	broad.mit.edu	37	X	105451179	105451179	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:105451179C>T	uc004emf.1	+	4	2403	c.1754C>T	c.(1753-1755)TCA>TTA	p.S585L	MUM1L1_uc004emg.1_Missense_Mutation_p.S585L	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	585										ovary(2)|pancreas(1)|skin(1)	4						TGGCTGAAATCATTTTTGAAT	0.398													9	3					0	0	0.000673	0	0
COL4A5	1287	broad.mit.edu	37	X	107863576	107863576	+	Missense_Mutation	SNP	G	T	T	rs104886188		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:107863576G>T	uc004enz.1	+	31	2799	c.2597G>T	c.(2596-2598)GGG>GTG	p.G866V	COL4A5_uc011mso.1_Missense_Mutation_p.G866V|COL4A5_uc004eob.1_Missense_Mutation_p.G474V	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	866	Triple-helical region.		Missing (in APSX).|G -> E (in APSX; adult type).		axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGCAGTCCAGGGATCCCCGGA	0.512									Alport_syndrome_with_Diffuse_Leiomyomatosis				32	14					7.11191e-15	1.16969e-14	0.002836	1	0
PAK3	5063	broad.mit.edu	37	X	110439090	110439090	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:110439090C>T	uc004epa.2	+	12	1203	c.1176C>T	c.(1174-1176)TTC>TTT	p.F392F	PAK3_uc010npt.1_Silent_p.F377F|PAK3_uc010npu.1_Silent_p.F377F|PAK3_uc004eoy.1_Silent_p.F132F|PAK3_uc004eoz.2_Silent_p.F377F|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Silent_p.F413F|PAK3_uc010npw.1_Silent_p.F398F	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	392	Protein kinase.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						CTTTGGATTTCCTGCACTCAA	0.323										TSP Lung(19;0.15)			42	25					0	0	0.003214	0	0
Unknown	0	broad.mit.edu	37	X	114953385	114953385	+	RNA	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:114953385C>T	uc004eqf.2	-	1		c.280G>A								full-length cDNA clone CS0DJ015YA07 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).																		TGATCTGCCTCACTGACAATC	0.453													27	7					0	0	0.006320	0	0
KIAA1210	57481	broad.mit.edu	37	X	118222545	118222545	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:118222545C>T	uc004era.3	-	11	2648	c.2648G>A	c.(2647-2649)GGA>GAA	p.G883E		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	883										ovary(4)|skin(1)	5						TTTGGGCTTTCCCAAGGCCTG	0.463													16	9					0	0	0.004007	0	0
IGSF1	3547	broad.mit.edu	37	X	130410986	130410986	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:130410986C>T	uc004ewd.2	-	14	2773	c.2535G>A	c.(2533-2535)GGG>GGA	p.G845G	IGSF1_uc004ewe.3_Silent_p.G839G|IGSF1_uc004ewf.2_Silent_p.G825G	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	845	Extracellular (Potential).|Ig-like C2-type 8.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						AGCTGTAATTCCCTCCATCAC	0.537													125	44					0	0	0.003610	0	0
USP26	83844	broad.mit.edu	37	X	132161249	132161249	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:132161249G>A	uc010nrm.1	-	6	1470	c.1000C>T	c.(1000-1002)CCC>TCC	p.P334S	USP26_uc011mvf.1_Missense_Mutation_p.P334S	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	334					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					GCATTAAGGGGAATTTTACCC	0.368													20	9					0	0	0.002299	0	0
SLC9A6	10479	broad.mit.edu	37	X	135092682	135092682	+	Silent	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:135092682C>T	uc004ezj.2	+	7	961	c.885C>T	c.(883-885)TTC>TTT	p.F295F	SLC9A6_uc004ezk.2_Silent_p.F327F|SLC9A6_uc011mvx.1_Silent_p.F275F	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	295	Helical; (Potential).				regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TTGGGATCTTCCTTGGAATCT	0.413													40	19					0	0	0.006999	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135770138	135770138	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:135770138C>T	uc004fab.2	-	11	1660	c.1198G>A	c.(1198-1200)GAT>AAT	p.D400N	ARHGEF6_uc011mwd.1_Missense_Mutation_p.D273N|ARHGEF6_uc011mwe.1_Missense_Mutation_p.D246N	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	400	DH.				apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					TCCTGATGATCTGGATGAGTA	0.214													5	59					0	0	0.000602	0	0
ZNF185	7739	broad.mit.edu	37	X	152128322	152128322	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chrX:152128322G>A	uc010ntv.1	+	17	1523	c.1486G>A	c.(1486-1488)GGT>AGT	p.G496S	ZNF185_uc011myg.1_Missense_Mutation_p.G528S|ZNF185_uc011myh.1_Missense_Mutation_p.G499S|ZNF185_uc011myi.1_Missense_Mutation_p.G467S|ZNF185_uc011myj.1_Missense_Mutation_p.G437S|ZNF185_uc011myk.1_Missense_Mutation_p.G497S|ZNF185_uc004fgw.3_Missense_Mutation_p.G275S|ZNF185_uc004fgu.2_Missense_Mutation_p.G125S|ZNF185_uc004fgv.2_Missense_Mutation_p.G193S|ZNF185_uc004fgx.2_Missense_Mutation_p.G134S	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	496						cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGCCCCAAGAGGTGGCCAAGG	0.582													10	7					0	0	0.006214	0	0
EPS8	2059	broad.mit.edu	37	12	15800062	15800062	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr12:15800062delT	uc009zif.2	-	15	1661	c.1567delA	c.(1567-1569)AGAfs	p.R523fs	EPS8_uc001rdb.2_Frame_Shift_Del_p.R523fs|EPS8_uc009zig.2_Frame_Shift_Del_p.R263fs|EPS8_uc010shv.1_Frame_Shift_Del_p.R263fs	NM_004447	NP_004438	Q12929	EPS8_HUMAN	epidermal growth factor receptor pathway	523					cell proliferation|epidermal growth factor receptor signaling pathway		SH3/SH2 adaptor activity			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		all_epithelial(100;1.87e-05)|Breast(259;0.000286)|Hepatocellular(102;0.244)		BRCA - Breast invasive adenocarcinoma(232;4.29e-05)|GBM - Glioblastoma multiforme(207;0.0264)		AAATGTTACCTATCTATATGG	0.438													19	78	---	---	---	---					
FASN	2194	broad.mit.edu	37	17	80042479	80042499	+	In_Frame_Del	DEL	CAGGGCAGGTGGGCTGGGCAT	-	-	rs142506451		TCGA-ER-A2NC-06A-11D-A197-08	TCGA-ER-A2NC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9311f745-0a8f-40d4-af40-de42157e51bf	1f1ed143-f6c2-4b1f-90ba-059a30ed53fa	g.chr17:80042479_80042499delCAGGGCAGGTGGGCTGGGCAT	uc002kdu.2	-	27	4775_4795	c.4658_4678delATGCCCAGCCCACCTGCCCTG	c.(4657-4680)CATGCCCAGCCCACCTGCCCTGGC>CGC	p.1553_1560HAQPTCPG>R	FASN_uc002kdv.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1553_1560					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	AGCTGGGCGCCAGGGCAGGTGGGCTGGGCATGGCGCAGCGA	0.656													6	11	---	---	---	---					
