Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RERE	473	broad.mit.edu	37	1	8420555	8420556	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:8420555_8420556GG>AA	uc001ape.2	-	19	3821_3822	c.3011_3012CC>TT	c.(3010-3012)CCC>CTT	p.P1004L	RERE_uc001apf.2_Missense_Mutation_p.P1004L|RERE_uc010nzx.1_Missense_Mutation_p.P736L|RERE_uc001apd.2_Missense_Mutation_p.P450L	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1004	Pro-rich.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		TCAGCCCGGGGGGCTGGGCGGG	0.723													8	3					0	0	0.004672	0	0
PDPN	10630	broad.mit.edu	37	1	13940906	13940906	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:13940906C>T	uc001avd.2	+	5	759	c.710C>T	c.(709-711)TCG>TTG	p.S237L	PDPN_uc001avc.2_Intron|PDPN_uc009vob.2_Missense_Mutation_p.S119L|PDPN_uc009voc.2_Missense_Mutation_p.S119L|PDPN_uc001ave.2_Intron|PDPN_uc001avf.2_Missense_Mutation_p.S119L	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	161	Cytoplasmic (Potential).				cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		GGAAGGTACTCGTAAGTAAAT	0.393													49	32					0	0	0.014410	0	0
NT5C1A	84618	broad.mit.edu	37	1	40126862	40126862	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:40126862G>A	uc001cdq.1	-	5	630	c.630C>T	c.(628-630)TTC>TTT	p.F210F		NM_032526	NP_115915	Q9BXI3	5NT1A_HUMAN	5'-nucleotidase, cytosolic IA	210					purine base metabolic process|purine nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CGTCCCCATCGAAGGCCACGC	0.612													43	11					0	0	0.006999	0	0
SLC6A9	6536	broad.mit.edu	37	1	44466702	44466702	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:44466702A>T	uc001cll.2	-	11	1772	c.1580T>A	c.(1579-1581)ATG>AAG	p.M527K	SLC6A9_uc009vxe.2_Missense_Mutation_p.M383K|SLC6A9_uc010okm.1_Missense_Mutation_p.M454K|SLC6A9_uc001clm.2_Missense_Mutation_p.M473K|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Missense_Mutation_p.M458K|SLC6A9_uc001cln.2_Missense_Mutation_p.M454K|SLC6A9_uc010oko.1_Missense_Mutation_p.M343K|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	527						integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	ATAGTTGTCCATCAGCAGCAG	0.627													24	47					0	0	0.002780	0	0
DPYD	1806	broad.mit.edu	37	1	97981340	97981340	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:97981340C>T	uc001drv.2	-	13	1819	c.1682G>A	c.(1681-1683)CGA>CAA	p.R561Q		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	561					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AAAAGCTCTTCGAATCATTGA	0.388													37	17					0	0	0.011902	0	0
KIAA1324	57535	broad.mit.edu	37	1	109745567	109745567	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:109745567G>A	uc001dwq.2	+	23	3111	c.2975G>A	c.(2974-2976)AGG>AAG	p.R992K	KIAA1324_uc009wey.2_Missense_Mutation_p.R905K|KIAA1324_uc010ovg.1_Silent_p.E900E|KIAA1324_uc001dwr.2_Missense_Mutation_p.R642K	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	992	Cytoplasmic (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CTCTTTCAGAGGACTCCTGAT	0.537													64	91					0	0	0.014410	0	0
POGZ	23126	broad.mit.edu	37	1	151396447	151396447	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:151396447T>G	uc001eyd.1	-	9	1807	c.1501A>C	c.(1501-1503)AAA>CAA	p.K501Q	POGZ_uc001eye.1_Missense_Mutation_p.K448Q|POGZ_uc010pdb.1_Missense_Mutation_p.K492Q|POGZ_uc001eyf.1_Missense_Mutation_p.K448Q|POGZ_uc010pdc.1_Missense_Mutation_p.K439Q|POGZ_uc009wmv.1_Missense_Mutation_p.K406Q|POGZ_uc010pdd.1_Intron	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	501	C2H2-type 2.				cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TTTAGCCTTTTGGTACAATGT	0.398													21	100					0	0	0.014323	0	0
S100A7L2	645922	broad.mit.edu	37	1	153410686	153410686	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:153410686G>A	uc010pdx.1	-	2	231	c.153C>T	c.(151-153)TTC>TTT	p.F51F		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGAAGTTGGGGAAGTTCTCCT	0.507													25	49					0	0	0.007291	0	0
ETV3L	440695	broad.mit.edu	37	1	157069119	157069119	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:157069119C>T	uc001fqq.1	-	2	395	c.110G>A	c.(109-111)CGG>CAG	p.R37Q		NM_001004341	NP_001004341	Q6ZN32	ETV3L_HUMAN	ets variant 3-like	37						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Hepatocellular(266;0.158)	Prostate(1639;0.184)				CTGGATCTGCCGGGAGCCTGG	0.622													26	44					0	0	0.006320	0	0
FCRL3	115352	broad.mit.edu	37	1	157650538	157650538	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:157650538C>T	uc001frb.2	-	13	2272	c.1980G>A	c.(1978-1980)CCG>CCA	p.P660P	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.P660P|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Silent_p.P386P|FCRL3_uc001frc.1_Silent_p.P660P	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	660	ITIM motif 2.|Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					GGGAATAAATCGGGTTGCTAT	0.413													46	88					0	0	0.014410	0	0
OR10R2	343406	broad.mit.edu	37	1	158449791	158449791	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:158449791G>A	uc010pik.1	+	1	124	c.124G>A	c.(124-126)GAA>AAA	p.E42K	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	42	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					CAGCCTTGGTGAAATTCAGCT	0.423													67	107					0	0	0.014410	0	0
PVRL4	81607	broad.mit.edu	37	1	161044509	161044509	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:161044509C>T	uc001fxo.2	-	5	1191	c.892G>A	c.(892-894)GAC>AAC	p.D298N	PVRL4_uc010pjy.1_5'Flank|PVRL4_uc010pjz.1_Missense_Mutation_p.D32N	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	298	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CCCAAAGTGTCCCCATCCACT	0.597													26	33					0	0	0.003954	0	0
KLHL20	27252	broad.mit.edu	37	1	173702979	173702979	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:173702979C>T	uc001gjc.2	+	3	330	c.151C>T	c.(151-153)CCT>TCT	p.P51S	KLHL20_uc010pmr.1_Intron|KLHL20_uc009wwf.2_Missense_Mutation_p.P33S|KLHL20_uc001gjd.2_Missense_Mutation_p.P51S	NM_014458	NP_055273	Q9Y2M5	KLH20_HUMAN	kelch-like 20	51					cytoskeleton organization|negative regulation of apoptosis|proteasomal ubiquitin-dependent protein catabolic process|response to interferon-alpha	actin cytoskeleton|cell surface|Cul3-RING ubiquitin ligase complex|Golgi apparatus|perinuclear region of cytoplasm|PML body	actin binding|interferon-gamma binding|ubiquitin-protein ligase activity			ovary(1)	1						AGACAAGCACCCTCGACAAAC	0.527													18	116					0	0	0.008871	0	0
FAM129A	116496	broad.mit.edu	37	1	184772734	184772734	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:184772734C>T	uc001gra.2	-	12	1733	c.1539G>A	c.(1537-1539)GCG>GCA	p.A513A	FAM129A_uc001grb.1_Silent_p.A276A	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	513					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						TGCATGTGGACGCCAGTGCCT	0.433													49	87					0	0	0.014410	0	0
CACNA1S	779	broad.mit.edu	37	1	201022629	201022629	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:201022629T>G	uc001gvv.2	-	30	3980	c.3753A>C	c.(3751-3753)GAA>GAC	p.E1251D		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1251	Cytoplasmic (Potential).|IV.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TTCGCACTCCTTCTGCCCGGC	0.617													22	81					0	0	0.003954	0	0
IGFN1	91156	broad.mit.edu	37	1	201184809	201184809	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:201184809G>A	uc001gwc.2	+	4	1390	c.618G>A	c.(616-618)GTG>GTA	p.V206V	IGFN1_uc001gwb.2_Intron	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GGGCTGAGGTGGTGGGCAGCA	0.657													25	46					0	0	0.003330	0	0
C1orf198	84886	broad.mit.edu	37	1	230979330	230979330	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:230979330G>A	uc001hub.2	-	3	741	c.697C>T	c.(697-699)CCT>TCT	p.P233S	C1orf198_uc009xfh.1_Missense_Mutation_p.P103S|C1orf198_uc001huc.1_Missense_Mutation_p.P16S|C1orf198_uc001hud.1_Missense_Mutation_p.P195S	NM_032800	NP_116189	Q9H425	CA198_HUMAN	hypothetical protein LOC84886 isoform 1	233											0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				TTCGGGGCAGGTTCCTGCCGG	0.637													19	101					0	0	0.010504	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129469	248129469	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:248129469C>G	uc010pzd.1	+	1	836	c.836C>G	c.(835-837)TCC>TGC	p.S279C	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	279	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			AGGCCACACTCCTTGCGTTCC	0.483													18	59					0	0	0.004990	0	0
MYOF	26509	broad.mit.edu	37	10	95095700	95095700	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr10:95095700G>C	uc001kin.2	-	41	4664	c.4541C>G	c.(4540-4542)CCT>CGT	p.P1514R	MYOF_uc001kio.2_Missense_Mutation_p.P1501R|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1514	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						AACCACAGAAGGATCTTCATT	0.408													11	199					0	0	0.010729	0	0
ALDH18A1	5832	broad.mit.edu	37	10	97393334	97393334	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr10:97393334G>A	uc001kkz.2	-	6	873	c.631C>T	c.(631-633)CTT>TTT	p.L211F	ALDH18A1_uc001kky.2_Missense_Mutation_p.L211F|ALDH18A1_uc010qog.1_Missense_Mutation_p.L100F|ALDH18A1_uc010qoh.1_5'UTR	NM_002860	NP_002851	P54886	P5CS_HUMAN	pyrroline-5-carboxylate synthetase isoform 1	211	Glutamate 5-kinase.				proline biosynthetic process	mitochondrial inner membrane	ATP binding|glutamate 5-kinase activity|glutamate-5-semialdehyde dehydrogenase activity			pancreas(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0402)		Epithelial(162;9.1e-07)|all cancers(201;2.55e-05)	L-Glutamic Acid(DB00142)	TTCATTCTAAGGAGTTCATGA	0.438													38	77					0	0	0.005524	0	0
NKX2-3	159296	broad.mit.edu	37	10	101293025	101293025	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr10:101293025T>G	uc009xwj.2	+	1	336	c.137T>G	c.(136-138)ATG>AGG	p.M46R	uc001kps.1_5'Flank	NM_145285	NP_660328	Q8TAU0	NKX23_HUMAN	NK2 transcription factor related, locus 3	46						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;4.72e-10)|all cancers(201;3.45e-08)		GCGCCCTGCATGCTGGCCGCC	0.572													7	30					0	0	0.003080	0	0
CPXM2	119587	broad.mit.edu	37	10	125521537	125521537	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr10:125521537G>T	uc001lhk.1	-	11	1953	c.1628C>A	c.(1627-1629)CCC>CAC	p.P543H	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	543					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GTGGTCGTCGGGGGTGGGGGT	0.672													35	55					4.65686e-17	5.50873e-17	0.003755	1	0
MKI67	4288	broad.mit.edu	37	10	129911718	129911718	+	Silent	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr10:129911718A>G	uc001lke.2	-	8	1824	c.1629T>C	c.(1627-1629)ACT>ACC	p.T543T	MKI67_uc001lkf.2_Silent_p.T183T|MKI67_uc009yav.1_Silent_p.T118T|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	543					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GGACAGGTGGAGTGTGCATTA	0.473													50	135					0	0	0.014410	0	0
MUC2	4583	broad.mit.edu	37	11	1080564	1080564	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr11:1080564C>T	uc001lsx.1	+	9	1233	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	402	VWFD 2.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	TCACCACCTTCGATGGGAAGA	0.652													17	5					0	0	0.006122	0	0
PHF21A	51317	broad.mit.edu	37	11	45991416	45991416	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr11:45991416G>T	uc001ncc.3	-	8	1273	c.649C>A	c.(649-651)CAG>AAG	p.Q217K	PHF21A_uc001ncb.3_Missense_Mutation_p.Q218K|PHF21A_uc009ykx.2_Missense_Mutation_p.Q218K|PHF21A_uc001nce.2_Missense_Mutation_p.Q218K|PHF21A_uc001nca.1_5'UTR	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	217					blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						GGGATAAACTGTGGTACTTTG	0.423													6	17					2.0095e-06	2.27978e-06	0.001984	1	0
TMEM216	51259	broad.mit.edu	37	11	61161357	61161357	+	Silent	SNP	T	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr11:61161357T>G	uc010rlj.1	+	3	410	c.117T>G	c.(115-117)GGT>GGG	p.G39G	TMEM216_uc001nrn.1_5'UTR	NM_016499	NP_057583	Q9P0N5	TM216_HUMAN	transmembrane protein 216	39						integral to membrane					0						TATTGGCAGGTGTCCTGCTAC	0.438													11	30					0	0	0.003330	0	0
CCDC88B	283234	broad.mit.edu	37	11	64112234	64112234	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr11:64112234G>A	uc001nzy.2	+	14	2265	c.2221G>A	c.(2221-2223)GCT>ACT	p.A741T	CCDC88B_uc009ypo.1_Missense_Mutation_p.A738T|CCDC88B_uc001nzz.1_Missense_Mutation_p.A390T	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	741	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GAGGAGAAAGGCTGAGGCCCT	0.662													23	23					0	0	0.014323	0	0
KDM4D	55693	broad.mit.edu	37	11	94731152	94731152	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr11:94731152C>T	uc001pfe.2	+	3	1448	c.616C>T	c.(616-618)CTT>TTT	p.L206F		NM_018039	NP_060509	Q6B0I6	KDM4D_HUMAN	jumonji domain containing 2D	206	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CTACCTGCACCTTGGGGAGCC	0.557													70	24					0	0	0.014410	0	0
IL10RA	3587	broad.mit.edu	37	11	117866368	117866368	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr11:117866368C>T	uc001prv.2	+	6	830	c.753C>T	c.(751-753)GCC>GCT	p.A251A	IL10RA_uc010rxl.1_Silent_p.A231A|IL10RA_uc010rxm.1_Silent_p.A231A|IL10RA_uc010rxn.1_Silent_p.A102A|IL10RA_uc001prw.2_Silent_p.A102A	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	251	Helical; (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		GAGCCCTCGCCTACTGCCTGG	0.592													44	16					0	0	0.009718	0	0
BCL9L	283149	broad.mit.edu	37	11	118769345	118769345	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr11:118769345G>A	uc001pug.2	-	8	5244	c.4279C>T	c.(4279-4281)CTC>TTC	p.L1427F	BCL9L_uc009zal.2_Missense_Mutation_p.L1422F	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1427					negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		TGGGTCATGAGGCCTTGTGGA	0.662													26	12					0	0	0.003954	0	0
MGP	4256	broad.mit.edu	37	12	15035126	15035126	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr12:15035126C>T	uc001rcn.1	-	4	362	c.259G>A	c.(259-261)GGA>AGA	p.G87R		NM_000900	NP_000891	P08493	MGP_HUMAN	matrix Gla protein precursor	87	Gla.				cartilage condensation|cell differentiation|ossification|regulation of bone mineralization	proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent|structural constituent of bone			ovary(1)	1						GCATTGTATCCATAAACCATG	0.483													60	170					0	0	0.014410	0	0
MYO1A	4640	broad.mit.edu	37	12	57424845	57424845	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr12:57424845C>T	uc001smw.3	-	23	2706	c.2463G>A	c.(2461-2463)CAG>CAA	p.Q821Q	MYO1A_uc010sqz.1_Silent_p.Q659Q|MYO1A_uc009zpd.2_Silent_p.Q821Q	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	821					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						AGAAGAGCTGCTGCAGCTCCT	0.532													37	49					0	0	0.006230	0	0
GLT8D2	83468	broad.mit.edu	37	12	104390557	104390557	+	Missense_Mutation	SNP	C	T	T	rs7133444		TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr12:104390557C>T	uc001tkh.1	-	8	962	c.556G>A	c.(556-558)GAT>AAT	p.D186N	GLT8D2_uc001tki.1_Missense_Mutation_p.D186N	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	186	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						GAGGGCAAATCGCAGTCATCT	0.502													60	30					0	0	0.014410	0	0
ACAD10	80724	broad.mit.edu	37	12	112182552	112182552	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr12:112182552A>T	uc001tsq.2	+	13	2020	c.1820A>T	c.(1819-1821)GAG>GTG	p.E607V	ACAD10_uc001tsp.2_Missense_Mutation_p.E607V|ACAD10_uc009zvx.2_Missense_Mutation_p.E638V|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	607							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						GTTTTCAAAGAGATGCCCTTC	0.537													19	50					0	0	0.007413	0	0
DTX1	1840	broad.mit.edu	37	12	113515335	113515335	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr12:113515335T>G	uc001tuk.1	+	2	702	c.366T>G	c.(364-366)GAT>GAG	p.D122E		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	122	WWE 2.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						CGGCCTACGATATGGACATCT	0.622													6	68					0	0	0.001984	0	0
PABPC3	5042	broad.mit.edu	37	13	25670378	25670378	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr13:25670378C>T	uc001upy.2	+	1	103	c.42C>T	c.(40-42)TAC>TAT	p.Y14Y		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	14	RRM 1.				mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		CCTCGCTCTACGTGGGGGACC	0.637													23	65					0	0	0.003954	0	0
C13orf30	144809	broad.mit.edu	37	13	43360951	43360951	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr13:43360951A>G	uc010tfk.1	+	3	275	c.152A>G	c.(151-153)AAC>AGC	p.N51S	C13orf30_uc010tfl.1_Missense_Mutation_p.N51S	NM_182508	NP_872314	Q8N7L0	CM030_HUMAN	hypothetical protein LOC144809	51											0		Lung NSC(96;0.000369)|Prostate(109;0.0305)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.000512)|OV - Ovarian serous cystadenocarcinoma(117;0.000563)|BRCA - Breast invasive adenocarcinoma(63;0.0677)		AGGATTTACAACTCCAGGCCC	0.502													51	159					0	0	0.014410	0	0
OR4K1	79544	broad.mit.edu	37	14	20404268	20404268	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr14:20404268C>T	uc001vwj.1	+	1	443	c.443C>T	c.(442-444)TCC>TTC	p.S148F		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GTGTCTATTTCCTGGGCGGTG	0.453													15	101					0	0	0.004990	0	0
OR4K15	81127	broad.mit.edu	37	14	20443798	20443798	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr14:20443798C>T	uc010tkx.1	+	1	121	c.121C>T	c.(121-123)CTG>TTG	p.L41L		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	41	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTTGCTGGGACTGTCTAGTTC	0.408													61	86					0	0	0.014410	0	0
OR4L1	122742	broad.mit.edu	37	14	20528800	20528800	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr14:20528800C>T	uc001vwn.1	+	1	597	c.597C>T	c.(595-597)GTC>GTT	p.V199V		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AATTATTTGTCATTGCTGACA	0.423													55	90					0	0	0.014410	0	0
SALL2	6297	broad.mit.edu	37	14	21993455	21993455	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr14:21993455C>A	uc001wbe.2	-	2	689	c.407G>T	c.(406-408)GGA>GTA	p.G136V	SALL2_uc010tly.1_Missense_Mutation_p.G134V|SALL2_uc010tlz.1_Intron|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Intron|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	136	Poly-Gly.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		GCCCCCGCCTCCCCCAGCCGC	0.682													26	36					1.68575e-08	1.93513e-08	0.007291	1	0
SLC7A8	23428	broad.mit.edu	37	14	23609687	23609687	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr14:23609687G>A	uc001wiz.2	-	5	1507	c.781C>T	c.(781-783)CCC>TCC	p.P261S	SLC7A8_uc001wix.2_Missense_Mutation_p.P58S|SLC7A8_uc010tnk.1_Intron|SLC7A8_uc010tnl.1_Missense_Mutation_p.P156S|SLC7A8_uc001wiy.2_RNA|SLC7A8_uc010akj.2_Missense_Mutation_p.P261S	NM_012244	NP_036376	Q9UHI5	LAT2_HUMAN	solute carrier family 7 (cationic amino acid	261					blood coagulation|cellular amino acid metabolic process|leukocyte migration|metal ion homeostasis|response to toxin	basolateral plasma membrane|cytoplasm|integral to plasma membrane	neutral amino acid transmembrane transporter activity|organic cation transmembrane transporter activity|peptide antigen binding|protein binding|toxin transporter activity			ovary(1)	1	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.00809)	L-Alanine(DB00160)|L-Glutamine(DB00130)|L-Phenylalanine(DB00120)	CACTTGTAGGGATCAACAAGC	0.557													61	118					0	0	0.014410	0	0
SIX4	51804	broad.mit.edu	37	14	61180388	61180388	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr14:61180388G>A	uc001xfc.2	-	3	2083	c.2083C>T	c.(2083-2085)CAG>TAG	p.Q695*		NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	695						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		TGACCTACCTGATCTTCAGCT	0.453													19	26					0	0	0.006122	0	0
TRPM1	4308	broad.mit.edu	37	15	31341578	31341578	+	Silent	SNP	T	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr15:31341578T>A	uc001zfm.2	-	12	1634	c.1506A>T	c.(1504-1506)ACA>ACT	p.T502T	TRPM1_uc010azy.2_Silent_p.T409T|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	502	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		GAGCACTCACTGTGTTATAAA	0.463													52	115					0	0	0.014410	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350174	51350174	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr15:51350174G>A	uc001zyy.2	-	3	883	c.783C>T	c.(781-783)TTC>TTT	p.F261F		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	261											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		GGGTGGAGAGGAACTCCACAT	0.517													43	43					0	0	0.010771	0	0
BAIAP3	8938	broad.mit.edu	37	16	1392990	1392990	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr16:1392990A>G	uc002clk.1	+	14	1343	c.1343A>G	c.(1342-1344)AAC>AGC	p.N448S	BAIAP3_uc002clj.2_Missense_Mutation_p.N430S|BAIAP3_uc010uuz.1_Missense_Mutation_p.N413S|BAIAP3_uc010uva.1_Missense_Mutation_p.N385S|BAIAP3_uc010uvc.1_Missense_Mutation_p.N377S	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	448					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				GCCCAGAGCAACCTGTCACCC	0.687													23	45					0	0	0.004656	0	0
EMP2	2013	broad.mit.edu	37	16	10626808	10626808	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr16:10626808G>A	uc002czx.2	-	5	652	c.458C>T	c.(457-459)ACC>ATC	p.T153I		NM_001424	NP_001415	P54851	EMP2_HUMAN	epithelial membrane protein 2	153	Helical; (Potential).				cell proliferation	integral to membrane					0						GCTGATGAAGGTGCAGGCGAA	0.522													34	76					0	0	0.003755	0	0
SULT1A1	6817	broad.mit.edu	37	16	28617511	28617511	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr16:28617511G>A	uc002dqi.2	-	6	1114	c.641C>T	c.(640-642)TCC>TTC	p.S214F	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.S214F|SULT1A1_uc002dqk.2_Missense_Mutation_p.S214F|SULT1A1_uc002dql.2_Missense_Mutation_p.S214F|SULT1A1_uc002dqm.2_Missense_Mutation_p.S136F|SULT1A1_uc002dqn.2_Missense_Mutation_p.S305F|SULT1A1_uc002dqo.2_Missense_Mutation_p.S214F|SULT1A1_uc002dqp.2_Missense_Mutation_p.S214F	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	214	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						CTCTGGCAGGGAGCGCCCCAC	0.547													62	52					0	0	0.014410	0	0
TUFM	7284	broad.mit.edu	37	16	28857367	28857367	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr16:28857367G>A	uc002drh.2	-	2	252	c.113C>T	c.(112-114)GCA>GTA	p.A38V	uc010vct.1_Intron|SH2B1_uc002dri.2_5'Flank	NM_003321	NP_003312	P49411	EFTU_HUMAN	Tu translation elongation factor, mitochondrial	35						mitochondrial nucleoid	GTP binding|GTPase activity|protein binding|translation elongation factor activity			ovary(1)	1						GAGAGGCAATGCCGGGGCTTT	0.652													22	75					0	0	0.003330	0	0
FBRS	64319	broad.mit.edu	37	16	30680186	30680186	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr16:30680186C>T	uc002dzd.3	+	11	955	c.692C>T	c.(691-693)CCT>CTT	p.P231L	FBRS_uc002dzc.3_Missense_Mutation_p.P143L	NM_001105079	NP_001098549	Q9HAH7	FBRS_HUMAN	fibrosin	231										ovary(1)	1			Colorectal(24;0.103)			CACCGCAGTCCTCTGACCTTT	0.701													11	12					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr16:32070612A>C	uc002ecv.1	+	1		c.65A>C								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GGTCTCCTGCAAGGCTTCTGG	0.552													7	117					0	0	0.008291	0	0
TEKT1	83659	broad.mit.edu	37	17	6722611	6722611	+	Missense_Mutation	SNP	T	A	A	rs143710127		TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:6722611T>A	uc002gdt.2	-	3	367	c.257A>T	c.(256-258)AAT>ATT	p.N86I	TEKT1_uc010vth.1_Intron	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	86	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				ATCAGTTACATTCACAAGCTG	0.458													15	98					0	0	0.004990	0	0
GUCY2D	3000	broad.mit.edu	37	17	7918671	7918671	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:7918671T>G	uc002gjt.2	+	15	2869	c.2795T>G	c.(2794-2796)ATG>AGG	p.M932R		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	932	Guanylate cyclase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				GACGCCTATATGGTGGCCTCG	0.577													38	45					0	0	0.009718	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8215734	8215734	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:8215734C>A	uc002glc.2	+	2	498	c.377C>A	c.(376-378)TCA>TAA	p.S126*	ARHGEF15_uc002glb.1_Nonsense_Mutation_p.S126*|ARHGEF15_uc002gld.2_Nonsense_Mutation_p.S126*|ARHGEF15_uc010vuw.1_Nonsense_Mutation_p.S126*	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	126	Pro-rich.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCGTCTGGGTCACCCTGCACG	0.672													21	184					8.10497e-08	9.2492e-08	0.010504	1	0
MYH13	8735	broad.mit.edu	37	17	10212567	10212567	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:10212567T>G	uc002gmk.1	-	35	5243	c.5153A>C	c.(5152-5154)CAG>CCG	p.Q1718P		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1718	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GTGCAGGAGCTGCACGCGGTC	0.672													15	54					0	0	0.004007	0	0
MYH8	4626	broad.mit.edu	37	17	10307679	10307679	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:10307679C>T	uc002gmm.2	-	22	2751	c.2656G>A	c.(2656-2658)GAG>AAG	p.E886K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	886	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TCATTTTTCTCTTTTAAGAGA	0.408									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				75	48					0	0	0.014410	0	0
CDRT15P	94158	broad.mit.edu	37	17	13927900	13927900	+	RNA	SNP	T	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:13927900T>C	uc002god.1	+	1		c.86T>C				NR_003261				Homo sapiens CMT1A duplicated region transcript 15 pseudogene (CDRT15P), non-coding RNA.												0						GAGCCTTTTCTGACGATGCCG	0.572													3	52					0	0	0.009096	0	0
JUP	3728	broad.mit.edu	37	17	39925418	39925418	+	Silent	SNP	C	T	T	rs140539043	byFrequency	TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:39925418C>T	uc002hxq.2	-	4	787	c.510G>A	c.(508-510)TCG>TCA	p.S170S	JUP_uc010wfs.1_Silent_p.S170S|JUP_uc002hxr.2_Silent_p.S170S|JUP_uc002hxs.2_Silent_p.S170S	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	170	ARM 1.				adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		CCTCCTTCTTCGACAGCTGGT	0.657													59	6					0	0	0.014410	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342311	60342311	+	RNA	SNP	G	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:60342311G>T	uc010woz.1	-	14		c.1818C>A				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						AAAACGAGGAGGCGAAGCTTG	0.458													12	101					1.06801e-11	1.25572e-11	0.009535	1	0
EVPL	2125	broad.mit.edu	37	17	74011093	74011093	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:74011093T>C	uc002jqi.2	-	17	2354	c.2126A>G	c.(2125-2127)AAC>AGC	p.N709S	EVPL_uc010wss.1_Missense_Mutation_p.N731S|EVPL_uc010wst.1_Missense_Mutation_p.N179S	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	709	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CTCCTGGAAGTTGTTCTGCAG	0.682													69	24					0	0	0.014410	0	0
C18orf34	374864	broad.mit.edu	37	18	30847243	30847243	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr18:30847243C>T	uc002kxn.2	-	12	1337	c.1195G>A	c.(1195-1197)GTT>ATT	p.V399I	C18orf34_uc010dme.1_5'Flank|C18orf34_uc010xbr.1_Missense_Mutation_p.V399I|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.V399I|C18orf34_uc002kxp.2_Missense_Mutation_p.V399I	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	399	Potential.									ovary(1)	1						TGGTCATAAACTCTTCTCAAA	0.279													34	109					0	0	0.003271	0	0
ZNF271	10778	broad.mit.edu	37	18	32887691	32887691	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr18:32887691G>A	uc002kyq.3	+	3	2095	c.1103G>A	c.(1102-1104)AGC>AAC	p.S368N	ZNF271_uc002kyp.3_Missense_Mutation_p.S368N|ZNF271_uc002kyr.3_Missense_Mutation_p.S368N	NR_024565				SubName: Full=cDNA FLJ13394 fis, clone PLACE1001304, highly similar to Homo sapiens zinc finger protein 271 (ZNF271), mRNA;												0						GTTCAGTGCAGCAGAAGTTGT	0.428													9	45					0	0	0.006214	0	0
SLC44A2	57153	broad.mit.edu	37	19	10747072	10747072	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:10747072C>T	uc002mpf.2	+	15	1446	c.1307C>T	c.(1306-1308)TCG>TTG	p.S436L	SLC44A2_uc002mpe.3_Missense_Mutation_p.S434L|SLC44A2_uc002mpg.1_Missense_Mutation_p.S156L|SLC44A2_uc002mph.2_5'UTR	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	436	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	GGTGGTGAGTCGGGCTACCAC	0.622													37	121					0	0	0.003271	0	0
SFRS14	10147	broad.mit.edu	37	19	19121075	19121075	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:19121075T>C	uc002nkx.2	-	5	2073	c.1927A>G	c.(1927-1929)AAC>GAC	p.N643D	SFRS14_uc002nkz.1_Missense_Mutation_p.N657D|SFRS14_uc002nla.1_Missense_Mutation_p.N643D|SFRS14_uc002nlb.2_Missense_Mutation_p.N643D|SFRS14_uc010xqk.1_Missense_Mutation_p.N412D	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	643					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			CCTCGCAAGTTCTCGCTCATC	0.488													62	283					0	0	0.014410	0	0
ZNF493	284443	broad.mit.edu	37	19	21606712	21606712	+	Silent	SNP	T	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:21606712T>C	uc002npx.2	+	2	1147	c.867T>C	c.(865-867)TCT>TCC	p.S289S	ZNF493_uc002npw.2_Silent_p.S417S|ZNF493_uc002npy.2_Silent_p.S289S	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	289	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATAAGGAGTCTTCACACCTTA	0.348													3	77					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	19	22785490	22785490	+	RNA	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:22785490G>A	uc002nqu.3	+	8		c.1579G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		CAGCTCTCTGGAGAGACAGAC	0.612													54	88					0	0	0.014410	0	0
ZNF536	9745	broad.mit.edu	37	19	31038958	31038958	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:31038958C>T	uc002nsu.1	+	4	2570	c.2432C>T	c.(2431-2433)CCG>CTG	p.P811L	ZNF536_uc010edd.1_Missense_Mutation_p.P811L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	811					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGGGCTGGGCCGCTGTCTGGG	0.567													64	30					0	0	0.014410	0	0
PSG1	5669	broad.mit.edu	37	19	43372258	43372258	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:43372258A>G	uc002ovb.2	-	5	1376	c.1238T>C	c.(1237-1239)GTC>GCC	p.V413A	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_Intron|PSG1_uc002our.1_Missense_Mutation_p.V413A|PSG1_uc010eio.1_Missense_Mutation_p.V413A|PSG1_uc002oux.1_Missense_Mutation_p.V342A|PSG1_uc002ouy.1_Missense_Mutation_p.V320A|PSG1_uc002ouz.1_Missense_Mutation_p.V413A|PSG1_uc002ova.1_Missense_Mutation_p.V320A|PSG1_uc002ovc.2_Missense_Mutation_p.V320A|PSG1_uc002ovd.1_Missense_Mutation_p.V413A	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	413					female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				CTTACCAGAGACTTCGACTGT	0.463													98	336					0	0	0.014410	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52000671	52000671	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:52000671C>T	uc002pwx.1	-	6	1490	c.1434G>A	c.(1432-1434)ACG>ACA	p.T478T	SIGLEC12_uc002pww.1_Silent_p.T360T|SIGLEC12_uc010eoy.1_Silent_p.T205T	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	478	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		ATGCCCCTAGCGTCACTCCTG	0.547													56	90					0	0	0.014410	0	0
ZNF845	91664	broad.mit.edu	37	19	53856702	53856702	+	Missense_Mutation	SNP	G	A	A	rs150688663	by1000genomes	TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:53856702G>A	uc010ydv.1	+	4	2891	c.2774G>A	c.(2773-2775)CGT>CAT	p.R925H	ZNF845_uc010ydw.1_Missense_Mutation_p.R925H	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	925	C2H2-type 26.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAACCTTCCGTCACAATTCA	0.363													3	37					0	0	0.009096	0	0
ZNF845	91664	broad.mit.edu	37	19	53856730	53856730	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:53856730G>A	uc010ydv.1	+	4	2919	c.2802G>A	c.(2800-2802)AAG>AAA	p.K934K	ZNF845_uc010ydw.1_Silent_p.K934K	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	934	C2H2-type 26.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAATTCATAAGACAATTCATA	0.368													3	33					0	0	0.009096	0	0
VSTM1	284415	broad.mit.edu	37	19	54545555	54545555	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:54545555T>G	uc002qcw.3	-	5	639	c.463A>C	c.(463-465)ATC>CTC	p.I155L	VSTM1_uc010erb.2_RNA|VSTM1_uc002qcx.3_Intron	NM_198481	NP_940883	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1	155	Helical; (Potential).					integral to membrane					0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)		CTGTAGATGATGAAGACTGAG	0.507													25	32					0	0	0.003954	0	0
NLRP4	147945	broad.mit.edu	37	19	56363606	56363606	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:56363606G>A	uc002qmd.3	+	2	582	c.160G>A	c.(160-162)GAA>AAA	p.E54K		NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	54	DAPIN.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ATCCCGGGAAGAACTTGCAAA	0.403													55	75					0	0	0.014410	0	0
ZNF274	10782	broad.mit.edu	37	19	58718389	58718389	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr19:58718389A>G	uc002qrq.1	+	7	1019	c.560A>G	c.(559-561)CAC>CGC	p.H187R	ZNF274_uc010yhu.1_RNA|ZNF274_uc010yhv.1_RNA|ZNF274_uc002qrr.1_Missense_Mutation_p.H155R|ZNF274_uc002qrs.1_Missense_Mutation_p.H82R|ZNF274_uc010eum.1_5'UTR	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	187	SCAN box.				viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		GAGCTGTGTCACCAGTGGCTA	0.627													6	20					0	0	0.001168	0	0
OTOF	9381	broad.mit.edu	37	2	26725240	26725240	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:26725240C>T	uc002rhk.2	-	7	765	c.638G>A	c.(637-639)GGA>GAA	p.G213E	OTOF_uc010ylb.1_RNA	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	213	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGTCCATCTCCTAGCCGAAT	0.567													23	19					0	0	0.012319	0	0
FOSL2	2355	broad.mit.edu	37	2	28627176	28627176	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:28627176T>G	uc002rma.2	+	2	1114	c.305T>G	c.(304-306)GTG>GGG	p.V102G	FOSL2_uc010ymi.1_Missense_Mutation_p.V63G	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	102					cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					AGACCTGGCGTGATCAAGACC	0.637													35	136					0	0	0.006230	0	0
MAL	4118	broad.mit.edu	37	2	95713853	95713853	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:95713853G>A	uc002stx.1	+	2	302	c.243G>A	c.(241-243)GAG>GAA	p.E81E	MAL_uc002sty.1_Intron|MAL_uc002stz.1_Silent_p.E81E|MAL_uc002sua.1_Intron	NM_002371	NP_002362	P21145	MAL_HUMAN	T-lymphocyte maturation-associated protein	81	Cytoplasmic (Potential).|MARVEL.				apical protein localization|cell differentiation|central nervous system development|induction of apoptosis|membrane raft polarization|myelination	apical plasma membrane|endoplasmic reticulum|endosome|integral to plasma membrane|membrane raft	apoptotic protease activator activity|channel activity|lipid binding|structural constituent of myelin sheath				0				STAD - Stomach adenocarcinoma(1183;0.18)		ACGGTGGAGAGACTTCCTGGG	0.602													31	43					0	0	0.010818	0	0
NPHP1	4867	broad.mit.edu	37	2	110922252	110922252	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:110922252A>T	uc002tfn.3	-	8	878	c.784T>A	c.(784-786)TGT>AGT	p.C262S	NPHP1_uc002tfm.3_Intron|NPHP1_uc002tfl.3_Missense_Mutation_p.C262S|NPHP1_uc002tfo.3_Intron|NPHP1_uc010ywx.1_Intron|NPHP1_uc010fjv.1_Intron	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	262					actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						TTAACAAGACAGAAGATGCCC	0.468													39	111					0	0	0.014410	0	0
IMP4	92856	broad.mit.edu	37	2	131103834	131103834	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:131103834C>T	uc002tra.1	+	8	767	c.750C>T	c.(748-750)CGC>CGT	p.R250R		NM_033416	NP_219484	Q96G21	IMP4_HUMAN	IMP4, U3 small nucleolar ribonucleoprotein,	250	Brix.				rRNA processing|translation	nucleolus|ribonucleoprotein complex	aminoacyl-tRNA ligase activity|ATP binding|protein binding			central_nervous_system(2)	2	Colorectal(110;0.1)					TCGGGCCCCGCTTTGAGCTGA	0.617													13	32					0	0	0.003163	0	0
LRP1B	53353	broad.mit.edu	37	2	141243054	141243054	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:141243054C>T	uc002tvj.1	-	59	10255	c.9283G>A	c.(9283-9285)GAT>AAT	p.D3095N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3095	Extracellular (Potential).|LDL-receptor class B 28.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCAATCCAATCGACAGCAAGT	0.373										TSP Lung(27;0.18)			44	13					0	0	0.013114	0	0
TTN	7273	broad.mit.edu	37	2	179464170	179464170	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:179464170G>A	uc010zfg.1	-	239	48870	c.48646C>T	c.(48646-48648)CGT>TGT	p.R16216C	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R9911C|TTN_uc010zfi.1_Missense_Mutation_p.R9844C|TTN_uc010zfj.1_Missense_Mutation_p.R9719C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17143							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGCCAGGACGACCTAAAATG	0.368													55	20					0	0	0.014410	0	0
VWC2L	402117	broad.mit.edu	37	2	215279277	215279277	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:215279277G>A	uc002vet.2	+	2	490	c.360G>A	c.(358-360)GGG>GGA	p.G120G	VWC2L_uc010zjl.1_Silent_p.G120G	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	120	VWFC 2.					extracellular region					0						AATATCACGGGAAAAATTACA	0.358													16	4					0	0	0.006122	0	0
CCDC108	255101	broad.mit.edu	37	2	219894796	219894796	+	Silent	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:219894796A>G	uc002vjl.1	-	10	1380	c.1296T>C	c.(1294-1296)ACT>ACC	p.T432T	CCDC108_uc010fwa.1_5'UTR|CCDC108_uc010zkp.1_Silent_p.T421T|CCDC108_uc010zkq.1_Silent_p.T367T	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	432						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGTGTCCAGAGTCTTGGGGT	0.557											OREG0015211	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	45					0	0	0.004656	0	0
ALPPL2	251	broad.mit.edu	37	2	233272555	233272555	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:233272555G>T	uc002vss.3	+	5	529	c.476G>T	c.(475-477)GGA>GTA	p.G159V		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	159					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	TCACCCTCAGGAAAGTCAGTG	0.617													44	8					1.5731e-28	1.88384e-28	0.011902	1	0
ALPI	248	broad.mit.edu	37	2	233321670	233321670	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:233321670G>A	uc002vst.3	+	4	439	c.362G>A	c.(361-363)GGG>GAG	p.G121E	ALPI_uc002vsu.3_Missense_Mutation_p.G32E	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	121					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		TACCTGTGCGGGGTCAAGGCC	0.607													16	7					0	0	0.006122	0	0
HJURP	55355	broad.mit.edu	37	2	234750609	234750609	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr2:234750609G>A	uc002vvg.2	-	8	883	c.817C>T	c.(817-819)CGG>TGG	p.R273W	HJURP_uc010znd.1_Missense_Mutation_p.R212W|HJURP_uc010zne.1_Missense_Mutation_p.R181W	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	273					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		CTCAACAGCCGGCTCATGGAG	0.493													91	34					0	0	0.014410	0	0
NCOA6	23054	broad.mit.edu	37	20	33345550	33345550	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr20:33345550G>A	uc002xav.2	-	8	3572	c.1001C>T	c.(1000-1002)TCT>TTT	p.S334F	NCOA6_uc002xaw.2_Missense_Mutation_p.S334F|NCOA6_uc010gew.1_Missense_Mutation_p.S291F	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	334	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						TGTGCCCAGAGAACCCTGGGC	0.587													56	62					0	0	0.014410	0	0
GGT7	2686	broad.mit.edu	37	20	33449261	33449261	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr20:33449261G>A	uc002xay.2	-	4	705	c.662C>T	c.(661-663)TCC>TTC	p.S221F	GGT7_uc002xaz.1_Missense_Mutation_p.S238F|GGT7_uc002xba.1_Missense_Mutation_p.S221F	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	221	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						GGTCTCCCAGGATCTTTGCAG	0.527													32	58					0	0	0.008361	0	0
PPP1R3D	5509	broad.mit.edu	37	20	58514314	58514314	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr20:58514314C>T	uc002ybb.2	-	1	1039	c.673G>A	c.(673-675)GGG>AGG	p.G225R	C20orf177_uc002yba.2_Intron|C20orf177_uc010zzx.1_5'Flank|C20orf177_uc002ybc.2_5'Flank	NM_006242	NP_006233	O95685	PPR3D_HUMAN	protein phosphatase 1, regulatory subunit 3D	225	CBM21.				glycogen metabolic process		protein binding|protein serine/threonine phosphatase activity				0	all_lung(29;0.00391)		BRCA - Breast invasive adenocarcinoma(7;5.12e-09)			CCTGCGGGCCCGCGCCACCGC	0.692													13	60					0	0	0.003163	0	0
DSCAM	1826	broad.mit.edu	37	21	41505858	41505858	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr21:41505858C>T	uc002yyq.1	-	19	3937	c.3485G>A	c.(3484-3486)AGC>AAC	p.S1162N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1162	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CACCTGGATGCTGTAGTTGGT	0.567													28	58					0	0	0.005443	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43808546	43808546	+	Missense_Mutation	SNP	C	T	T	rs140614903	byFrequency	TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr21:43808546C>T	uc002zbb.2	-	5	613	c.412G>A	c.(412-414)GCA>ACA	p.A138T	TMPRSS3_uc002zaz.2_Missense_Mutation_p.A11T|TMPRSS3_uc002zba.2_Missense_Mutation_p.A11T|TMPRSS3_uc002zbc.2_Missense_Mutation_p.A138T|TMPRSS3_uc002zbd.2_Missense_Mutation_p.A138T	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	138	SRCR.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						GCAACATTTGCGTAGTGACCC	0.512													30	85					0	0	0.010818	0	0
DNMT3L	29947	broad.mit.edu	37	21	45671560	45671560	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr21:45671560C>T	uc002zeg.1	-	9	1199	c.715G>A	c.(715-717)GAT>AAT	p.D239N	DNMT3L_uc002zeh.1_Missense_Mutation_p.D239N	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	239					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		TACACAAGATCGAAGGGTCCC	0.652													30	33					0	0	0.010818	0	0
TRPM2	7226	broad.mit.edu	37	21	45802618	45802618	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr21:45802618G>A	uc002zet.1	+	10	1446	c.1233G>A	c.(1231-1233)CGG>CGA	p.R411R	TRPM2_uc002zeu.1_Silent_p.R411R|TRPM2_uc002zew.1_Silent_p.R411R|TRPM2_uc010gpt.1_Silent_p.R411R|TRPM2_uc002zex.1_Silent_p.R197R	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	411	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATATCGTCCGGAGGCGGCAGC	0.562													16	19					0	0	0.004007	0	0
TADA3	10474	broad.mit.edu	37	3	9831606	9831606	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr3:9831606G>A	uc003bsx.1	-	3	797	c.249C>T	c.(247-249)TTC>TTT	p.F83F	TADA3_uc010hcn.1_Silent_p.F83F|TADA3_uc003bsy.2_Silent_p.F83F|ARPC4_uc003bsz.1_5'Flank|ARPC4_uc003bta.1_5'Flank|ARPC4_uc003btb.1_5'Flank|ARPC4_uc003btc.1_5'Flank	NM_006354	NP_006345	O75528	TADA3_HUMAN	transcriptional adaptor 3 isoform a	83					estrogen receptor signaling pathway|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	ligand-dependent nuclear receptor binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity				0						CCAGCTTCAGGAATCGTCTGT	0.522													43	20					0	0	0.013114	0	0
GUCA1C	9626	broad.mit.edu	37	3	108672598	108672598	+	Silent	SNP	G	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr3:108672598G>T	uc003dxj.2	-	1	80	c.12C>A	c.(10-12)GGC>GGA	p.G4G	GUCA1C_uc003dxk.2_Silent_p.G4G	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	4					signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						CTATAGATTTGCCATTCCCCA	0.428													52	107					5.39261e-20	6.4182e-20	0.014410	1	0
ARGFX	503582	broad.mit.edu	37	3	121305296	121305296	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr3:121305296C>T	uc003eef.2	+	5	892	c.797C>T	c.(796-798)TCC>TTC	p.S266F		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	266						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		GGACAGGGTTCCTCTCTCAGC	0.478													47	70					0	0	0.011902	0	0
PLXNA1	5361	broad.mit.edu	37	3	126733579	126733579	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr3:126733579A>C	uc003ejg.2	+	13	2717	c.2713A>C	c.(2713-2715)AGC>CGC	p.S905R		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	928	IPT/TIG 1.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CGGGGACGCCAGCTCCGTGCG	0.582													6	31					0	0	0.001168	0	0
LOC729375	729375	broad.mit.edu	37	3	129821754	129821754	+	RNA	SNP	C	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr3:129821754C>A	uc003ene.2	-	2		c.162G>T			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						CAATACAGCACGTCTACGGTG	0.587													6	71					3.86212e-05	4.35611e-05	0.008291	1	0
CLDN18	51208	broad.mit.edu	37	3	137743456	137743456	+	Silent	SNP	T	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr3:137743456T>C	uc003ero.1	+	3	446	c.393T>C	c.(391-393)TGT>TGC	p.C131C	CLDN18_uc003erp.1_Silent_p.C131C|CLDN18_uc010hue.1_Intron	NM_001002026	NP_001002026	P56856	CLD18_HUMAN	claudin 18 isoform 2	131	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity			upper_aerodigestive_tract(1)|ovary(1)	2						CAGGTCTTTGTGCAATTGCTG	0.453													45	229					0	0	0.014410	0	0
NLGN1	22871	broad.mit.edu	37	3	173998380	173998380	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr3:173998380C>T	uc003fio.1	+	7	2182	c.1759C>T	c.(1759-1761)CAT>TAT	p.H587Y	NLGN1_uc003fip.1_Missense_Mutation_p.H587Y	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	604	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			ACTTTATCTCCATATTGGATT	0.398													64	88					0	0	0.014410	0	0
PDZD2	23037	broad.mit.edu	37	5	31799634	31799634	+	Silent	SNP	C	T	T	rs146790239		TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr5:31799634C>T	uc003jhl.2	+	2	667	c.279C>T	c.(277-279)TTC>TTT	p.F93F	PDZD2_uc003jhm.2_Silent_p.F93F	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	93	PDZ 1.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TCCCTGTTTTCGGGGACTATG	0.567													78	29					0	0	0.014410	0	0
LOC644936	644936	broad.mit.edu	37	5	79596090	79596090	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr5:79596090C>A	uc010jai.2	-	1	208	c.67G>T	c.(67-69)GAC>TAC	p.D23Y		NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						CCAGTCAGGTCCAGACACAGG	0.552													18	6					7.07596e-05	7.93489e-05	0.006122	1	0
SRP19	6728	broad.mit.edu	37	5	112227799	112227799	+	Missense_Mutation	SNP	A	G	G	rs712665	by1000genomes	TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr5:112227799A>G	uc011cvv.1	+	4	793	c.538A>G	c.(538-540)AGT>GGT	p.S180G	SRP19_uc011cvu.1_Missense_Mutation_p.S165G|REEP5_uc011cvw.1_Intron|REEP5_uc003kqe.1_Intron|REEP5_uc011cvx.1_Intron|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_Intron			P09132	SRP19_HUMAN	SubName: Full=Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2;	Error:Variant_position_missing_in_P09132_after_alignment					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		TTTAGAAAATAGTACCACATG	0.328													4	56					0	0	0.000602	0	0
SRP19	6728	broad.mit.edu	37	5	112227939	112227939	+	Silent	SNP	T	C	C	rs712666	by1000genomes	TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr5:112227939T>C	uc011cvv.1	+	4	933	c.678T>C	c.(676-678)TCT>TCC	p.S226S	SRP19_uc011cvu.1_Silent_p.S211S|REEP5_uc011cvw.1_Intron|REEP5_uc003kqe.1_Intron|REEP5_uc011cvx.1_Intron|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_Intron			P09132	SRP19_HUMAN	SubName: Full=Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2;	Error:Variant_position_missing_in_P09132_after_alignment					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		TCCCAACATCTAGTCCTACCC	0.453													3	97					0	0	0.000602	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801461	140801461	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr5:140801461C>T	uc003lkq.1	+	1	925	c.667C>T	c.(667-669)CGA>TGA	p.R223*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Nonsense_Mutation_p.R223*|PCDHGA11_uc003lkp.1_Nonsense_Mutation_p.R223*	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	223	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGATCCCATCCGAAAGGGCGC	0.522													44	24					0	0	0.008740	0	0
ARAP3	64411	broad.mit.edu	37	5	141051859	141051859	+	Silent	SNP	G	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr5:141051859G>T	uc003llm.2	-	10	1473	c.1395C>A	c.(1393-1395)GCC>GCA	p.A465A	ARAP3_uc011dbe.1_Silent_p.A127A|ARAP3_uc003lln.2_Silent_p.A387A|ARAP3_uc003llo.1_Silent_p.A465A	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	465	PH 2.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						CCCCAGACTCGGCTGTGAAGC	0.627													27	50					7.38237e-10	8.57592e-10	0.006320	1	0
PPARGC1B	133522	broad.mit.edu	37	5	149206305	149206305	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr5:149206305G>A	uc003lrc.2	+	3	364	c.322G>A	c.(322-324)GTG>ATG	p.V108M	PPARGC1B_uc003lrb.1_Missense_Mutation_p.V108M|PPARGC1B_uc003lrd.2_Missense_Mutation_p.V108M|PPARGC1B_uc003lrf.2_Missense_Mutation_p.V87M|PPARGC1B_uc003lre.1_Missense_Mutation_p.V87M	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	108					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TGAAGATGACGTGGGTCTGGC	0.622													38	41					0	0	0.004878	0	0
OR2J2	26707	broad.mit.edu	37	6	29141738	29141738	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:29141738G>A	uc011dlm.1	+	1	428	c.326G>A	c.(325-327)GGA>GAA	p.G109E		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTGCACTGGGAATCACAGAG	0.488													122	149					0	0	0.014410	0	0
HLA-H	3136	broad.mit.edu	37	6	29856463	29856463	+	Missense_Mutation	SNP	T	G	G	rs151026547	by1000genomes	TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:29856463T>G	uc010jro.2	+	3	510	c.458T>G	c.(457-459)TTC>TGC	p.F153C	HLA-G_uc011dmb.1_Intron|HLA-H_uc003nod.2_RNA					SubName: Full=cDNA FLJ52667, highly similar to HLA class I histocompatibility antigen, alpha chain H;												0						GAGGGCGAGTTCGTGGAGTGG	0.687													9	60					0	0	0.002450	0	0
PGC	5225	broad.mit.edu	37	6	41712139	41712139	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:41712139G>A	uc003ora.1	-	3	373	c.324C>T	c.(322-324)GCC>GCT	p.A108A		NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	108					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			ACTCACTGCAGGCCTGGCTCT	0.612													71	70					0	0	0.014410	0	0
TINAG	27283	broad.mit.edu	37	6	54212203	54212203	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:54212203C>T	uc003pcj.2	+	6	933	c.787C>T	c.(787-789)CGA>TGA	p.R263*	TINAG_uc010jzt.2_Intron	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	263					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GTCTAAGGGTCGATACACGGC	0.418													23	27					0	0	0.014323	0	0
SLC17A5	26503	broad.mit.edu	37	6	74320250	74320250	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:74320250A>G	uc003phn.3	-	9	1260	c.1132T>C	c.(1132-1134)TTC>CTC	p.F378L	SLC17A5_uc010kax.2_Missense_Mutation_p.F37L|SLC17A5_uc010kay.2_RNA|SLC17A5_uc011dyo.1_Intron	NM_012434	NP_036566	Q9NRA2	S17A5_HUMAN	sialin	378	Helical; (Potential).				anion transport	integral to plasma membrane|lysosomal membrane|membrane fraction	sialic acid:hydrogen symporter activity			skin(5)|central_nervous_system(1)	6						GCTACCAGGAATACTGCAGGT	0.383													31	93					0	0	0.013726	0	0
FILIP1	27145	broad.mit.edu	37	6	76023848	76023848	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:76023848T>C	uc003pia.2	-	5	2073	c.1700A>G	c.(1699-1701)AAC>AGC	p.N567S	FILIP1_uc003phy.1_Missense_Mutation_p.N567S|FILIP1_uc003phz.2_Missense_Mutation_p.N468S|FILIP1_uc010kbe.2_Missense_Mutation_p.N570S|FILIP1_uc003pib.1_Missense_Mutation_p.N319S	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	567	Potential.									skin(3)|ovary(1)	4						TCTTGTCAAGTTGTATACTTT	0.313													22	49					0	0	0.012319	0	0
MDN1	23195	broad.mit.edu	37	6	90468045	90468045	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:90468045G>A	uc003pnn.1	-	19	2747	c.2631C>T	c.(2629-2631)TTC>TTT	p.F877F	MDN1_uc003pno.1_Silent_p.F296F	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	877					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CAAATAAACGGAAGTCAGGAT	0.433													12	9					0	0	0.013537	0	0
REV3L	5980	broad.mit.edu	37	6	111695074	111695074	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:111695074G>A	uc003puy.3	-	13	4807	c.4484C>T	c.(4483-4485)TCG>TTG	p.S1495L	REV3L_uc003pux.3_Missense_Mutation_p.S1417L|REV3L_uc003puz.3_Missense_Mutation_p.S1417L	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1495					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TTCTGATAACGACCTCGGTTT	0.388								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					36	122					0	0	0.003755	0	0
NKAIN2	154215	broad.mit.edu	37	6	125112530	125112530	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:125112530G>A	uc003pzo.2	+	5	797	c.520G>A	c.(520-522)GAA>AAA	p.E174K	NKAIN2_uc003pzp.2_Missense_Mutation_p.E173K|NKAIN2_uc010keq.2_Missense_Mutation_p.E107K|NKAIN2_uc010ker.2_Missense_Mutation_p.E84K	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	174						integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		ATGTATAACTGAAGAAGAGGA	0.408													12	41					0	0	0.001855	0	0
IGF2R	3482	broad.mit.edu	37	6	160501173	160501173	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr6:160501173G>A	uc003qta.2	+	39	5847	c.5699G>A	c.(5698-5700)GGC>GAC	p.G1900D		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	1900	13.|Lumenal (Potential).|Fibronectin type-II.				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		ACCGATGACGGCGTCCCCTGT	0.532													35	105					0	0	0.004289	0	0
ITGB8	3696	broad.mit.edu	37	7	20449354	20449354	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:20449354A>G	uc003suu.2	+	13	2845	c.2140A>G	c.(2140-2142)AAT>GAT	p.N714D	ITGB8_uc011jyh.1_Missense_Mutation_p.N579D	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	714	Cytoplasmic (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						ATGGAATAGTAATAAAATTAA	0.323													59	92					0	0	0.014410	0	0
PLEKHA8	84725	broad.mit.edu	37	7	30094403	30094403	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:30094403A>G	uc003tam.1	+	8	966	c.875A>G	c.(874-876)GAC>GGC	p.D292G	PLEKHA8_uc003tao.2_Missense_Mutation_p.D176G|PLEKHA8_uc003tap.1_Missense_Mutation_p.D292G|PLEKHA8_uc003tan.2_Missense_Mutation_p.D292G	NM_032639	NP_116028	Q96JA3	PKHA8_HUMAN	pleckstrin homology domain containing, family A	292					protein transport	cytoplasm	glycolipid binding|glycolipid transporter activity			breast(3)|ovary(1)	4						TCTGGATCAGACTCAAGTTGC	0.388													39	123					0	0	0.006230	0	0
NSUN5P2	260294	broad.mit.edu	37	7	72420461	72420461	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:72420461C>T	uc003twn.2	-	7	839	c.127G>A	c.(127-129)GCT>ACT	p.A43T	POM121_uc010lam.1_3'UTR|NSUN5P2_uc003twl.2_RNA|NSUN5P2_uc003twm.2_Missense_Mutation_p.A43T|NSUN5P2_uc003two.2_Missense_Mutation_p.A43T|NSUN5P2_uc003twq.2_Missense_Mutation_p.A43T|NSUN5P2_uc010lan.1_5'UTR|NSUN5P2_uc003twp.2_Missense_Mutation_p.A43T	NM_032158	NP_115534			NOL1/NOP2/Sun domain family, member 5C isoform												0						GACATGGGAGCCTGGCGGGGG	0.627													16	80					0	0	0.007413	0	0
C7orf51	222950	broad.mit.edu	37	7	100086290	100086290	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:100086290A>G	uc003uvd.1	+	4	1105	c.946A>G	c.(946-948)ACC>GCC	p.T316A	C7orf51_uc003uve.1_Missense_Mutation_p.T98A	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	316	Pro-rich.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CGGGACGCCCACCAAGACCAC	0.672													28	146					0	0	0.012213	0	0
SLC13A1	6561	broad.mit.edu	37	7	122821122	122821122	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:122821122C>T	uc003vkm.2	-	2	158	c.133G>A	c.(133-135)GCC>ACC	p.A45T	SLC13A1_uc010lks.2_5'UTR	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	45	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	CAAAATGTGGCGACCACAAAG	0.428													25	81					0	0	0.005443	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				42	80					0	0	0.009718	0	0
TRY6	154754	broad.mit.edu	37	7	142480063	142480063	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:142480063C>A	uc011ksq.1	+	2	278	c.195C>A	c.(193-195)TAC>TAA	p.Y65*	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						GTCACTGCTACAAGCCGTAAG	0.567													10	81					2.89027e-11	3.37778e-11	0.014323	1	0
TAS2R39	259285	broad.mit.edu	37	7	142880577	142880577	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:142880577C>T	uc011ksw.1	+	1	66	c.66C>T	c.(64-66)TGC>TGT	p.C22C		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	22	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					CTAAACTCTGCGATCCTGCAG	0.408													14	49					0	0	0.002450	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417709	150417709	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:150417709G>A	uc003whq.2	+	3	704	c.617G>A	c.(616-618)GGG>GAG	p.G206E	GIMAP1_uc003whp.2_Missense_Mutation_p.G214E	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	206	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAGCTGCTGGGGATGGTCGAG	0.692													15	15					0	0	0.002450	0	0
PDGFRL	5157	broad.mit.edu	37	8	17447069	17447069	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr8:17447069C>T	uc003wxr.2	+	2	209	c.148C>T	c.(148-150)CCT>TCT	p.P50S		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	50						extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		GCCCAAAATTCCTAAAATGAA	0.468													114	34					0	0	0.014410	0	0
C8orf34	116328	broad.mit.edu	37	8	69434077	69434077	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr8:69434077T>C	uc010lyz.2	+	6	600	c.551T>C	c.(550-552)ATT>ACT	p.I184T	C8orf34_uc010lyy.1_Missense_Mutation_p.I184T|C8orf34_uc003xyb.2_Missense_Mutation_p.I159T	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	184					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CCCCGTGTGATTGGAGAATGG	0.403													58	60					0	0	0.014410	0	0
PABPC1	26986	broad.mit.edu	37	8	101717163	101717163	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr8:101717163G>A	uc003yjs.1	-	13	2313	c.1809C>T	c.(1807-1809)CTC>CTT	p.L603L	PABPC1_uc011lhc.1_Silent_p.L571L|PABPC1_uc011lhd.1_Silent_p.L558L|PABPC1_uc003yjt.1_Silent_p.L600L|PABPC1_uc003yju.2_RNA	NM_002568	NP_002559	P11940	PABP1_HUMAN	poly(A) binding protein, cytoplasmic 1	603	PABC.				mRNA polyadenylation|mRNA stabilization|negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|translation	catalytic step 2 spliceosome|cytosol	nucleotide binding|poly(A) RNA binding|protein C-terminus binding|translation activator activity				0	all_cancers(14;6.8e-05)|all_epithelial(15;3.16e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;6.37e-11)|all cancers(13;1.11e-08)|OV - Ovarian serous cystadenocarcinoma(57;3.91e-05)|STAD - Stomach adenocarcinoma(118;0.206)			CCTTAGAACGGAGTGACTCTG	0.393													54	90					0	0	0.014410	0	0
ZNF34	80778	broad.mit.edu	37	8	145999097	145999097	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr8:145999097G>A	uc003zdy.3	-	6	1339	c.1237C>T	c.(1237-1239)CAC>TAC	p.H413Y	ZNF34_uc010mgb.2_Missense_Mutation_p.H310Y|ZNF34_uc003zdx.3_Missense_Mutation_p.H392Y	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	413	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		TCTCCAGTGTGAATTCTCTGA	0.438													19	24					0	0	0.008871	0	0
FREM1	158326	broad.mit.edu	37	9	14824925	14824925	+	Silent	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr9:14824925C>T	uc003zlm.2	-	11	2537	c.1947G>A	c.(1945-1947)CGG>CGA	p.R649R	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	649	CSPG 4.		R -> W (in BNAR).		cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CAACCAAATGCCGAGAAACTC	0.393													21	16					0	0	0.012319	0	0
ELAVL2	1993	broad.mit.edu	37	9	23692762	23692762	+	Silent	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr9:23692762G>A	uc003zpu.2	-	7	1148	c.873C>T	c.(871-873)ATC>ATT	p.I291I	ELAVL2_uc003zps.2_Silent_p.I278I|ELAVL2_uc003zpt.2_Silent_p.I278I|ELAVL2_uc003zpv.2_Silent_p.I291I|ELAVL2_uc003zpw.2_Silent_p.I278I	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	291	RRM 3.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		TTTGCCACAGGATACTCTCAT	0.458													67	23					0	0	0.014410	0	0
SPINK4	27290	broad.mit.edu	37	9	33246632	33246632	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr9:33246632G>A	uc003zsh.2	+	3	132	c.121G>A	c.(121-123)GTA>ATA	p.V41I	SUGT1P1_uc010mjq.1_Intron	NM_014471	NP_055286	O60575	ISK4_HUMAN	serine peptidase inhibitor, Kazal type 4	41	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity				0			LUSC - Lung squamous cell carcinoma(29;0.00506)			TGAACACATGGTAGAGTCTCC	0.557													47	73					0	0	0.014410	0	0
ZCCHC7	84186	broad.mit.edu	37	9	37357180	37357180	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr9:37357180G>A	uc003zzq.2	+	9	1720	c.1547G>A	c.(1546-1548)GGC>GAC	p.G516D	ZCCHC7_uc011lqh.1_Missense_Mutation_p.G226D|ZCCHC7_uc011lqi.1_Missense_Mutation_p.G515D|ZCCHC7_uc010mlt.2_Missense_Mutation_p.G515D	NM_032226	NP_115602	Q8N3Z6	ZCHC7_HUMAN	zinc finger, CCHC domain containing 7	516							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.0137)		GGCAAGAGGGGCAAGCAGAAG	0.443													4	84					0	0	0.009096	0	0
TRPM6	140803	broad.mit.edu	37	9	77370293	77370293	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr9:77370293T>C	uc004ajl.1	-	28	5120	c.4882A>G	c.(4882-4884)ACA>GCA	p.T1628A	TRPM6_uc004ajk.1_Missense_Mutation_p.T1623A|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.T579A|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.T584A	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1628	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTGGACACTGTGAACCAGTTC	0.458													30	126					0	0	0.012213	0	0
TNC	3371	broad.mit.edu	37	9	117848377	117848377	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr9:117848377C>T	uc004bjj.3	-	3	1995	c.1633G>A	c.(1633-1635)GGG>AGG	p.G545R	TNC_uc010mvf.2_Missense_Mutation_p.G545R	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	545	EGF-like 13.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						ACGCACTGCCCATTCACACAG	0.592													21	42					0	0	0.010504	0	0
SCAI	286205	broad.mit.edu	37	9	127762264	127762264	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr9:127762264A>G	uc004bpe.2	-	13	1231	c.1150T>C	c.(1150-1152)TAT>CAT	p.Y384H	SCAI_uc004bpd.2_Missense_Mutation_p.Y407H|SCAI_uc010mwu.2_RNA	NM_001144877	NP_001138349	Q8N9R8	SCAI_HUMAN	suppressor of cancer cell invasion isoform 2	384					negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|integral to membrane|nucleus	protein binding|transcription corepressor activity			ovary(2)|breast(2)|central_nervous_system(1)	5						CCAAAATCATAAGGACCTATA	0.378													32	138					0	0	0.012213	0	0
SRPX	8406	broad.mit.edu	37	X	38079978	38079978	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chrX:38079978A>G	uc004ddy.1	-	1	154	c.68T>C	c.(67-69)CTG>CCG	p.L23P	SRPX_uc004ddz.1_Missense_Mutation_p.L23P|SRPX_uc011mkh.1_Missense_Mutation_p.L23P|SRPX_uc011mki.1_Missense_Mutation_p.L23P	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	23			Missing.		cell adhesion	cell surface|membrane					0						CGGGACGCgcagcagcagcag	0.572											OREG0019726	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	10					0	0	0.000602	0	0
AKAP4	8852	broad.mit.edu	37	X	49958737	49958737	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chrX:49958737A>C	uc004dow.1	-	5	751	c.627T>G	c.(625-627)GAT>GAG	p.D209E	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Missense_Mutation_p.D31E|AKAP4_uc004dou.1_Missense_Mutation_p.D200E	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	209					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					AACATTCTCCATCAGGGGAAA	0.443													150	58					0	0	0.014410	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994526	140994526	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chrX:140994526C>T	uc004fbt.2	+	4	1622	c.1336C>T	c.(1336-1338)CCT>TCT	p.P446S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	446							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTCCAGATTCCTGTGAGCTC	0.463										HNSCC(15;0.026)			139	140					0	0	0.014410	0	0
MDS2	259283	broad.mit.edu	37	1	23953539	23953540	+	RNA	DEL	GA	-	-			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr1:23953539_23953540delGA	uc001bhi.3	+	3		c.829_830delGA			MDS2_uc001bhj.3_RNA					Homo sapiens MDS2 gene.											ovary(2)	2						AAAGGGAGGGGAGAGAGAGAGA	0.208			T	ETV6	MDS								2	4	---	---	---	---					
ALPK3	57538	broad.mit.edu	37	15	85382960	85382971	+	In_Frame_Del	DEL	CCAGGCCTCTGC	-	-			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr15:85382960_85382971delCCAGGCCTCTGC	uc002ble.2	+	5	1223_1234	c.1056_1067delCCAGGCCTCTGC	c.(1054-1068)TACCAGGCCTCTGCC>TAC	p.QASA353del		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	353_356	Ig-like 1.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CCGCCATCTACCAGGCCTCTGCCCAGAACAGC	0.627													11	92	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	16725606	16725607	+	RNA	INS	-	C	C			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr17:16725606_16725607insC	uc002gqq.1	-	1		c.287_288insG								full-length cDNA clone CS0DI013YN06 of Placenta Cot 25-normalized of Homo sapiens (human).																		CGCCATAGCCGCCCCCCAGCCT	0.475													10	21	---	---	---	---					
MLL3	58508	broad.mit.edu	37	7	151874148	151874148	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A2ND-06A-11D-A196-08	TCGA-ER-A2ND-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	844cd78e-19d6-45e2-9dba-8cd6cdb71a5d	d5708200-6909-4714-8798-66f9caa736ca	g.chr7:151874148delT	uc003wla.2	-	38	8609	c.8390delA	c.(8389-8391)AAGfs	p.K2797fs	MLL3_uc003wkz.2_Frame_Shift_Del_p.K1858fs|MLL3_uc003wky.2_Frame_Shift_Del_p.K306fs	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2797				K -> R (in Ref. 1; AAK00583).	intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding	p.K2797fs*26(18)		large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TTCTTGTTCCTTTTTTTTTGG	0.348			N		medulloblastoma								8	175	---	---	---	---					
