Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C1QC	714	broad.mit.edu	37	1	22973839	22973839	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:22973839C>T	uc001bgc.3	+	3	404	c.301C>T	c.(301-303)CCC>TCC	p.P101S	C1QC_uc001bga.3_Missense_Mutation_p.P101S|C1QC_uc001bgb.2_Missense_Mutation_p.P101S	NM_172369	NP_758957	P02747	C1QC_HUMAN	complement component 1, q subcomponent, C chain	101	Collagen-like.				complement activation, classical pathway|innate immune response|negative regulation of granulocyte differentiation|negative regulation of macrophage differentiation	collagen					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.21e-27)|Colorectal(126;1.5e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.61e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000538)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.196)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGTGCCCGGCCCCATGGGCAT	0.642000													30	59					0	0	0.037714	0	0
FGR	2268	broad.mit.edu	37	1	27939461	27939461	+	Silent	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:27939461G>A	uc001boj.2	-	11	1700	c.1554C>T	c.(1552-1554)TCC>TCT	p.S518S	FGR_uc001boi.2_Silent_p.S221S|FGR_uc001bok.2_Silent_p.S518S|FGR_uc001bol.2_Silent_p.S518S|FGR_uc001bom.2_Silent_p.S518S	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	518					platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GTGGTTCAGCGGAGGTGAAGT	0.612000													21	35					0	0	0.012319	0	0
CHI3L2	1117	broad.mit.edu	37	1	111773481	111773481	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:111773481T>G	uc001eam.2	+	3	259	c.188T>G	c.(187-189)TTC>TGC	p.F63C	CHI3L2_uc001ean.2_Missense_Mutation_p.F53C|CHI3L2_uc001eao.2_Translation_Start_Site|CHI3L2_uc009wga.2_Translation_Start_Site	NM_004000	NP_003991	Q15782	CH3L2_HUMAN	chitinase 3-like 2 isoform a	63					chitin catabolic process	extracellular space	cation binding|chitinase activity			central_nervous_system(1)	1		all_cancers(81;1.89e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0171)|Colorectal(144;0.0387)|all cancers(265;0.0464)|LUSC - Lung squamous cell carcinoma(189;0.0872)|Epithelial(280;0.0994)|COAD - Colon adenocarcinoma(174;0.141)		ATCTATTCATTCGCCAGCATC	0.463000													23	47					0	0	0.014323	0	0
DDX20	11218	broad.mit.edu	37	1	112308358	112308358	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:112308358G>A	uc001ebs.2	+	11	1670	c.1313_splice	c.e11-1	p.D438_splice	DDX20_uc010owf.1_Splice_Site_p.D200_splice|DDX20_uc001ebt.2_Splice_Site_p.D46_splice	NM_007204	NP_009135	Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20						assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding			lung(1)|kidney(1)	2		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTTTATGTAGATCCCATTCC	0.348000													61	107					0	0	0.014410	0	0
NBPF9	400818	broad.mit.edu	37	1	144619403	144619403	+	Missense_Mutation	SNP	A	G	G	rs4067646		TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:144619403A>G	uc009wig.1	+	7	626	c.550A>G	c.(550-552)AAA>GAA	p.K184E	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.K184E|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Missense_Mutation_p.K115E|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Missense_Mutation_p.K115E|NBPF9_uc010oyg.1_Missense_Mutation_p.K149E|NBPF9_uc009wii.1_Intron	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	184	NBPF 1.					cytoplasm					0						GAAAGTGCAGAAATCATCTGC	0.413000													8	346					0	0	0.010729	0	0
HMCN1	83872	broad.mit.edu	37	1	185704142	185704142	+	Silent	SNP	T	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:185704142T>A	uc001grq.1	+	1	460	c.231T>A	c.(229-231)CCT>CCA	p.P77P		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	77	VWFA.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CTAAAAGACCTCTTTTCAACT	0.368000													34	81					0	0	0.021022	0	0
CR1	1378	broad.mit.edu	37	1	207758161	207758161	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:207758161C>T	uc001hfy.2	+	25	4260	c.4120C>T	c.(4120-4122)CCT>TCT	p.P1374S	CR1_uc009xcl.1_Missense_Mutation_p.P924S|CR1_uc001hfx.2_Missense_Mutation_p.P1824S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1374	Extracellular (Potential).|Sushi 21.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CACAAGTGACCCTCATGGGAA	0.512000													7	217					0	0	0.029380	0	0
SORCS1	114815	broad.mit.edu	37	10	108389146	108389146	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr10:108389146C>A	uc001kym.2	-	19	2484	c.2476G>T	c.(2476-2478)GGT>TGT	p.G826C	SORCS1_uc001kyl.2_Missense_Mutation_p.G826C|SORCS1_uc009xxs.2_Missense_Mutation_p.G826C|SORCS1_uc001kyn.1_Missense_Mutation_p.G826C|SORCS1_uc001kyo.2_Missense_Mutation_p.G826C	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	826	Lumenal (Potential).|PKD.					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TGAACATCACCCTGAAAAACA	0.517000													13	11					1.49906e-05	6.371e-05	0.020292	1	0
MOB2	81532	broad.mit.edu	37	11	1491656	1491656	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr11:1491656C>T	uc010qwz.1	-	5	743	c.553G>A	c.(553-555)GTG>ATG	p.V185M	MOB2_uc001lto.1_Missense_Mutation_p.V69M|MOB2_uc001ltp.1_Translation_Start_Site|MOB2_uc001ltq.1_Missense_Mutation_p.V148M|MOB2_uc010qwy.1_Missense_Mutation_p.V69M	NM_053005	NP_443731	Q70IA6	MOB2_HUMAN	HCCA2 protein	154						nucleus|perinuclear region of cytoplasm	metal ion binding				0						TGTGCCAGCACGTGGAACAGG	0.582000													18	27					0	0	0.006122	0	0
AHNAK	79026	broad.mit.edu	37	11	62290254	62290254	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr11:62290254C>G	uc001ntl.2	-	5	11935	c.11635G>C	c.(11635-11637)GAT>CAT	p.D3879H	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3879					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				AGGTTAAGATCAATGTCAGGC	0.458000													12	288					0	0	0.013537	0	0
ELK3	2004	broad.mit.edu	37	12	96653537	96653537	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr12:96653537G>A	uc001teo.1	+	4	1310	c.1031G>A	c.(1030-1032)AGT>AAT	p.S344N		NM_005230	NP_005221	P41970	ELK3_HUMAN	ELK3 protein	344					negative regulation of transcription, DNA-dependent|signal transduction	mitochondrion	protein binding|purine-rich negative regulatory element binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	all_cancers(2;0.00173)					CTGACTCCGAGTCCACTGCTC	0.527000													38	74					0	0	0.019004	0	0
TMEM119	338773	broad.mit.edu	37	12	108985340	108985340	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr12:108985340A>G	uc001tng.2	-	2	983	c.820T>C	c.(820-822)TGT>CGT	p.C274R	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	274	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						CTGCAAGCACAGGGGCTTTCG	0.652000													3	140					0	0	0.009096	0	0
FLT3	2322	broad.mit.edu	37	13	28601295	28601295	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr13:28601295T>C	uc001urw.2	-	17	2219	c.2137A>G	c.(2137-2139)ACT>GCT	p.T713A	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.T713A	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	713	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCTGTCCAAGTCCTGTGAAAT	0.358000			Mis|O		AML|ALL								20	109					0	0	0.010504	0	0
IPO5	3843	broad.mit.edu	37	13	98645421	98645421	+	Silent	SNP	C	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr13:98645421C>A	uc001vnf.1	+	8	920	c.855C>A	c.(853-855)ACC>ACA	p.T285T	IPO5_uc001vne.2_Silent_p.T303T|IPO5_uc010tik.1_Silent_p.T160T|IPO5_uc010til.1_Silent_p.T225T	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	285					interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						TGATCGTCACCCTCTCTGAGA	0.388000													16	26					2.23348e-06	9.64298e-06	0.028581	1	0
TC2N	123036	broad.mit.edu	37	14	92251698	92251698	+	Silent	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr14:92251698G>A	uc001xzu.3	-	11	1361	c.1170C>T	c.(1168-1170)TTC>TTT	p.F390F	TC2N_uc001xzt.3_Silent_p.F390F|TC2N_uc010auc.2_Silent_p.F326F|TC2N_uc001xzv.3_Silent_p.F390F	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	390	C2.					nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		CCACCTTCACGAAAAAACCTA	0.323000													48	121					0	0	0.013114	0	0
SPPL2A	84888	broad.mit.edu	37	15	51012138	51012138	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:51012138T>A	uc001zyv.2	-	14	1667	c.1487A>T	c.(1486-1488)CAG>CTG	p.Q496L		NM_032802	NP_116191	Q8TCT8	PSL2_HUMAN	signal peptide peptidase-like 2A	496						integral to membrane	aspartic-type endopeptidase activity				0				all cancers(107;0.000712)|GBM - Glioblastoma multiforme(94;0.00314)		AGCACATACCTGATAGCTGTT	0.398000													14	48					0	0	0.016723	0	0
ZNF609	23060	broad.mit.edu	37	15	64792343	64792343	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:64792343T>C	uc002ann.2	+	1	725	c.725T>C	c.(724-726)CTA>CCA	p.L242P	ZNF609_uc010bgy.2_Missense_Mutation_p.L242P	NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	242						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						TGTCGCCTGCTAAAGAAAGTC	0.517000													11	31					0	0	0.008291	0	0
UNC45A	55898	broad.mit.edu	37	15	91496480	91496480	+	Silent	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:91496480C>T	uc002bqg.2	+	19	2857	c.2517C>T	c.(2515-2517)GCC>GCT	p.A839A	UNC45A_uc002bqd.2_Silent_p.A824A|UNC45A_uc010uqr.1_Silent_p.A231A|UNC45A_uc002bqi.2_Silent_p.A117A|RCCD1_uc002bqj.2_5'Flank|RCCD1_uc002bqk.2_5'Flank|RCCD1_uc002bql.2_5'Flank	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	839					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GGGCAGCTGCCGGGGGCTTGG	0.632000													35	314					0	0	0.017118	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652000													7	11					0	0	0.004482	0	0
CDH11	1009	broad.mit.edu	37	16	64984722	64984722	+	Silent	SNP	G	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr16:64984722G>T	uc002eoi.2	-	12	2276	c.1842C>A	c.(1840-1842)GGC>GGA	p.G614G	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Silent_p.G614G|CDH11_uc010vin.1_Silent_p.G488G	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	614	Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		CTGTGCTCAGGCCGGCGTTCA	0.627000			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			18	53					1.56452e-12	6.86372e-12	0.007413	1	0
MYO15A	51168	broad.mit.edu	37	17	18023082	18023082	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr17:18023082C>T	uc010vxh.1	+	2	1306	c.968C>T	c.(967-969)TCG>TTG	p.S323L		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	323	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TCGGGGTACTCGTCTCCTTAC	0.607000													21	68					0	0	0.012319	0	0
TLK2	11011	broad.mit.edu	37	17	60600509	60600509	+	Silent	SNP	A	C	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr17:60600509A>C	uc010ddp.2	+	5	506	c.238A>C	c.(238-240)AGG>CGG	p.R80R	TLK2_uc002izx.3_5'UTR|TLK2_uc002izz.3_Silent_p.R80R|TLK2_uc002jaa.3_Silent_p.R80R|TLK2_uc010wpd.1_Silent_p.R80R	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	80					cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						AGGCACTCCTAGGGGACATAA	0.269000													4	13					0	0	0.004482	0	0
CD300E	342510	broad.mit.edu	37	17	72613315	72613315	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr17:72613315C>G	uc002jlb.1	-	2	371	c.330G>C	c.(328-330)TGG>TGC	p.W110C		NM_181449	NP_852114	Q496F6	CLM2_HUMAN	CD300e molecule precursor	110	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AATCCAGGACCCACACTGTCT	0.547000													25	106					0	0	0.030593	0	0
HSPBP1	23640	broad.mit.edu	37	19	55785939	55785939	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr19:55785939G>A	uc002qjx.2	-	3	715	c.605C>T	c.(604-606)GCG>GTG	p.A202V	HSPBP1_uc002qjy.2_Missense_Mutation_p.A156V|HSPBP1_uc002qkb.2_Missense_Mutation_p.A156V|HSPBP1_uc002qka.2_Missense_Mutation_p.A156V|HSPBP1_uc002qkd.2_Missense_Mutation_p.A156V|HSPBP1_uc002qkc.2_Missense_Mutation_p.A156V	NM_012267	NP_036399	Q9NZL4	HPBP1_HUMAN	hsp70-interacting protein	159	ARM 1.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein folding		enzyme inhibitor activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		CGCAGCCCCCGCCTCCAGGTA	0.632000													13	19					0	0	0.024245	0	0
NLRP8	126205	broad.mit.edu	37	19	56466013	56466013	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr19:56466013A>G	uc002qmh.2	+	3	660	c.589A>G	c.(589-591)AGA>GGA	p.R197G	NLRP8_uc010etg.2_Missense_Mutation_p.R197G	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	197						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCTGCCCAAAAGACCCCAGGG	0.522000													3	69					0	0	0.009096	0	0
DUXA	503835	broad.mit.edu	37	19	57666725	57666725	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr19:57666725G>A	uc002qoa.1	-	5	499	c.454C>T	c.(454-456)CGA>TGA	p.R152*		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	152	Homeobox 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		CTAGATCTTCGATTTTGGAAC	0.383000													12	58					0	0	0.010729	0	0
LCLAT1	253558	broad.mit.edu	37	2	30785013	30785013	+	Silent	SNP	T	C	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr2:30785013T>C	uc002rnj.2	+	5	689	c.480T>C	c.(478-480)GGT>GGC	p.G160G	LCLAT1_uc010ymp.1_5'UTR|LCLAT1_uc002rnk.1_Silent_p.G160G|LCLAT1_uc002rnl.2_Silent_p.G122G|LCLAT1_uc010ymq.1_Silent_p.G122G	NM_182551	NP_872357	Q6UWP7	LCLT1_HUMAN	lysocardiolipin acyltransferase 1 isoform 1	160					multicellular organismal development|phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			ovary(2)	2						TGATTCTAGGTTGGGCCATGC	0.313000													9	28					0	0	0.006214	0	0
TNS1	7145	broad.mit.edu	37	2	218757693	218757693	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr2:218757693G>A	uc002vgt.2	-	9	783	c.385C>T	c.(385-387)CAC>TAC	p.H129Y	TNS1_uc002vgr.2_Missense_Mutation_p.H129Y|TNS1_uc002vgs.2_Missense_Mutation_p.H129Y|TNS1_uc010zjv.1_Missense_Mutation_p.H129Y|TNS1_uc010fvj.1_Missense_Mutation_p.H197Y|TNS1_uc010fvk.1_Missense_Mutation_p.H254Y|TNS1_uc002vgu.3_Missense_Mutation_p.H160Y	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	129	Phosphatase tensin-type.					cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		TTGCTGTAGTGCATGTAAGCC	0.542000													25	82					0	0	0.027356	0	0
UGT1A8	54576	broad.mit.edu	37	2	234526363	234526363	+	Missense_Mutation	SNP	A	G	G	rs150485330		TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr2:234526363A>G	uc002vup.2	+	1	73	c.10A>G	c.(10-12)ACA>GCA	p.T4A	UGT1A8_uc010zmv.1_Missense_Mutation_p.T4A	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	4					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		CATGGCTCGCACAGGGTGGAC	0.562000													4	51					0	0	0.009096	0	0
EDN3	1908	broad.mit.edu	37	20	57896118	57896118	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr20:57896118G>A	uc002yap.2	+	3	781	c.412G>A	c.(412-414)GGC>AGC	p.G138S	EDN3_uc002yao.1_Missense_Mutation_p.G138S|EDN3_uc002yaq.2_Missense_Mutation_p.G138S|EDN3_uc002yar.2_Missense_Mutation_p.G138S|EDN3_uc002yas.2_Missense_Mutation_p.G138S	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	138					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					AAGCTTCCGGGGCAAGAGGTC	0.597000													32	77					0	0	0.015359	0	0
C20orf200	253868	broad.mit.edu	37	20	61143603	61143603	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr20:61143603G>A	uc002ycz.1	-	3	736	c.245C>T	c.(244-246)CCC>CTC	p.P82L	C20orf200_uc002ycy.2_RNA	NM_152757	NP_689970			hypothetical protein LOC253868												0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;7.17e-06)			GGGGGCTAAGGGGCCACTTGG	0.652000													18	56					0	0	0.033300	0	0
BAGE2	85319	broad.mit.edu	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr21:11058322C>T	uc002yit.1	-	3	326	c.118G>A	c.(118-120)GAT>AAT	p.D40N	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AAATGCACATCGCTGAAAGGG	0.383000													14	157					0	0	0.024245	0	0
SAMSN1	64092	broad.mit.edu	37	21	15884826	15884826	+	Silent	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr21:15884826C>T	uc002yju.1	-	4	430	c.348G>A	c.(346-348)GAG>GAA	p.E116E	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Silent_p.E184E	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	116					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		GGGACACCTTCTCTGTGTGGG	0.478000													61	144					0	0	0.014410	0	0
BSN	8927	broad.mit.edu	37	3	49690423	49690423	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr3:49690423G>A	uc003cxe.3	+	5	3548	c.3434G>A	c.(3433-3435)CGG>CAG	p.R1145Q		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1145					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGCCCTAGCCGGCTTTACAAG	0.612000													13	66					0	0	0.016723	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	G	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr3:126707544T>G	uc003ejg.2	+	1	43	c.39T>G	c.(37-39)GGT>GGG	p.G13G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	36	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.567000													8	35					0	0	0.014323	0	0
DDX60	55601	broad.mit.edu	37	4	169176878	169176878	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr4:169176878C>T	uc003irp.2	-	26	3833	c.3541G>A	c.(3541-3543)GAG>AAG	p.E1181K		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1181							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTTTGTTTCTCTATGGATTTT	0.348000													11	49					0	0	0.013537	0	0
SORBS2	8470	broad.mit.edu	37	4	186545335	186545335	+	Silent	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr4:186545335C>T	uc003iyl.2	-	13	2094	c.1236G>A	c.(1234-1236)GAG>GAA	p.E412E	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Silent_p.E512E|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Silent_p.E316E|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Silent_p.E526E|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	412						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		CCTTGGAGTCCTCCTCACATA	0.592000													17	67					0	0	0.028581	0	0
C6orf146	222826	broad.mit.edu	37	6	4069856	4069856	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr6:4069856C>T	uc003mvx.2	-	7	941	c.601G>A	c.(601-603)GAT>AAT	p.D201N	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Missense_Mutation_p.D138N	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	201										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TCACTTTCATCTGTGAAATTT	0.323000													34	103					0	0	0.012213	0	0
SLC44A4	80736	broad.mit.edu	37	6	31833529	31833529	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr6:31833529A>G	uc010jti.2	-	15	1586	c.1520T>C	c.(1519-1521)CTC>CCC	p.L507P	NEU1_uc003nxq.3_5'Flank|NEU1_uc010jtg.2_5'Flank|NEU1_uc003nxr.3_5'Flank|NEU1_uc010jth.2_5'Flank|NEU1_uc003nxs.3_5'Flank	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	507	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	GGTCAGGATGAGGGCTCCAAA	0.567000													4	506					0	0	0.009096	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333705	33333705	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr6:33333705C>T	uc003shx.2	-	1	435	c.301G>A	c.(301-303)GAA>AAA	p.E101K		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						TTCTTCATTTCATGCTCAATC	0.582000													31	66					0	0	0.019004	0	0
DNAH8	1769	broad.mit.edu	37	6	38830108	38830108	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr6:38830108G>A	uc003ooe.1	+	42	6133	c.5533G>A	c.(5533-5535)GCA>ACA	p.A1845T		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGGTGCTCCCGCAGGACCTGC	0.458000													38	79					0	0	0.021022	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				27	65					0	0	0.030593	0	0
DPP6	1804	broad.mit.edu	37	7	154143335	154143335	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr7:154143335A>G	uc003wlk.2	+	2	409	c.280A>G	c.(280-282)AAA>GAA	p.K94E	DPP6_uc003wli.2_Missense_Mutation_p.K30E|DPP6_uc003wlj.2_Missense_Mutation_p.K94E|DPP6_uc010lqh.1_Missense_Mutation_p.K32E|DPP6_uc003wlm.2_Missense_Mutation_p.K32E|DPP6_uc011kvq.1_Missense_Mutation_p.K32E	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	94	Cytoplasmic (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			GAGGAATTGGAAAGGAATAGC	0.428000													29	85					0	0	0.013726	0	0
RBM33	155435	broad.mit.edu	37	7	155530778	155530778	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr7:155530778G>A	uc010lqk.1	+	11	1786	c.1418G>A	c.(1417-1419)AGC>AAC	p.S473N	RBM33_uc011kvv.1_Missense_Mutation_p.S282N	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	473	Pro-rich.						nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		AGATTCCCGAGCCATCTTTTT	0.468000													40	116					0	0	0.033182	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37729629	37729629	+	Silent	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr8:37729629G>A	uc003xkm.1	-	4	2735	c.2691C>T	c.(2689-2691)GTC>GTT	p.V897V	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_Silent_p.V226V|RAB11FIP1_uc003xko.1_Silent_p.V226V|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	897					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding	p.V897V(1)		ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CACTCATGGGGACTTCGGAGA	0.597000													21	59					0	0	0.010504	0	0
CA2	760	broad.mit.edu	37	8	86386612	86386612	+	Silent	SNP	T	C	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr8:86386612T>C	uc003ydk.2	+	4	591	c.411T>C	c.(409-411)CCT>CCC	p.P137P		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	137					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	TGCAGCAACCTGATGGACTGG	0.398000													7	252					0	0	0.006214	0	0
TMEM74	157753	broad.mit.edu	37	8	109796547	109796547	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr8:109796547G>A	uc003ymy.1	-	2	886	c.781C>T	c.(781-783)CGT>TGT	p.R261C	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	261					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			CTGTTTCGACGATAGAGCTCC	0.512000													17	51					0	0	0.033300	0	0
DFNB31	25861	broad.mit.edu	37	9	117266602	117266602	+	Silent	SNP	C	T	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr9:117266602C>T	uc004biz.3	-	1	1129	c.480G>A	c.(478-480)TCG>TCA	p.S160S	DFNB31_uc004biy.3_5'Flank|DFNB31_uc004bja.3_Silent_p.S160S|DFNB31_uc004bjb.2_Silent_p.S160S	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	160	PDZ 1.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium		p.S160W(1)		ovary(4)|central_nervous_system(1)|pancreas(1)	6						CGCCGTGCTCCGAGCCCCCAC	0.682000													38	56					0	0	0.025465	0	0
PPP6C	5537	broad.mit.edu	37	9	127912061	127912061	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr9:127912061G>A	uc004bpg.3	-	7	1030	c.809C>T	c.(808-810)TCG>TTG	p.S270L	PPP6C_uc010mwv.2_Missense_Mutation_p.S307L|PPP6C_uc010mww.2_Missense_Mutation_p.S248L|PPP6C_uc011lzr.1_Missense_Mutation_p.S123L	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	270					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						GACCATGATCGAAGCAATATT	0.408000													35	19					0	0	0.017118	0	0
FMN2	56776	broad.mit.edu	37	1	240255569	240255571	+	In_Frame_Del	DEL	GGC	-	-	rs35817759		TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:240255569_240255571delGGC	uc010pyd.1	+	1	385_387	c.160_162delGGC	c.(160-162)GGCdel	p.G59del	FMN2_uc010pye.1_In_Frame_Del_p.G59del	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	59					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GGGGGGAgggggcggcggcggcg	0.557													11	16	---	---	---	---					
MESP2	145873	broad.mit.edu	37	15	90320121	90320144	+	In_Frame_Del	DEL	AGGGGCAGGGGCAAGGGCAGGGGC	-	-	rs66601910		TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:90320121_90320144delAGGGGCAGGGGCAAGGGCAGGGGC	uc002bon.2	+	1	533_556	c.533_556delAGGGGCAGGGGCAAGGGCAGGGGC	c.(532-558)GAGGGGCAGGGGCAAGGGCAGGGGCAG>GAG	p.GQGQGQGQ195del	MESP2_uc010uqa.1_Intron	NM_001039958	NP_001035047	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog	195_202	13 X 2 AA tandem repeats of G-Q.|12.			Missing (in Ref. 2; AAI11414).	Notch signaling pathway	nucleus	DNA binding				0	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			ACGCaggcggaggggcaggggcaagggcaggggcaggggcaggg	0.473													5	9	---	---	---	---					
THNSL2	55258	broad.mit.edu	37	2	88474921	88474922	+	Splice_Site	DEL	GT	-	-			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr2:88474921_88474922delGT	uc002ssz.3	+	4	724	c.571_splice	c.e4+1	p.V191_splice	THNSL2_uc002ssv.2_Splice_Site|THNSL2_uc002ssw.3_Splice_Site_p.V191_splice|THNSL2_uc002ssx.3_Splice_Site_p.V159_splice|THNSL2_uc002sta.3_Splice_Site_p.V33_splice|THNSL2_uc002ssy.3_Splice_Site_p.V191_splice|THNSL2_uc010fhe.2_Splice_Site_p.V33_splice	NM_018271	NP_060741	Q86YJ6	THNS2_HUMAN	threonine synthase-like 2						threonine biosynthetic process		threonine synthase activity			ovary(1)	1						GTGTTTGGAGGTGTGTGCTGAG	0.505													16	42	---	---	---	---					
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	GGGGCGCAGCAGCTG	GGGGCGCAGCAGCTG			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr21:46012219_46012220insGGGGCGCAGCAGCTG	uc002zfm.2	-	1	167_168	c.146_147insCAGCTGCTGCGCCCC	c.(145-147)CCG>CCCAGCTGCTGCGCCCCG	p.49_49P>PSCCAP	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	49	2.|29 X 5 AA repeats of C-C-X(3).					keratin filament					0						GGCAGGGGGCCGGGGCGCAGCA	0.688													8	40	---	---	---	---					
BAT2	7916	broad.mit.edu	37	6	31597456	31597457	+	Frame_Shift_Ins	INS	-	C	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr6:31597456_31597457insC	uc003nvb.3	+	14	2337_2338	c.2088_2089insC	c.(2086-2091)CCACCCfs	p.P696fs	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Frame_Shift_Ins_p.P696fs	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	696_697	Poly-Pro.|4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						CACAGGCTCCACCCCCGCCCCC	0.594													8	60	---	---	---	---					
PRDM12	59335	broad.mit.edu	37	9	133543701	133543702	+	Splice_Site	DEL	GT	-	-			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr9:133543701_133543702delGT	uc004bzt.1	+	3	630	c.570_splice	c.e3+1	p.E190_splice		NM_021619	NP_067632	Q9H4Q4	PRD12_HUMAN	PR domain containing 12						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		GGCCATTGAGGTGTGTGTGTGT	0.594													9	80	---	---	---	---					
