Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOC2L	26155	broad.mit.edu	37	1	892513	892513	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:892513T>G	uc001abz.3	-	3	379	c.320A>C	c.(319-321)GAG>GCG	p.E107A	NOC2L_uc001aby.3_5'UTR|NOC2L_uc009vjq.2_Missense_Mutation_p.E107A	NM_015658	NP_056473	Q9Y3T9	NOC2L_HUMAN	nucleolar complex associated 2 homolog	107	Poly-Glu.					nucleolus	protein binding			ovary(1)|skin(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.86e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.08e-23)|Colorectal(212;0.000161)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(365;0.000475)|Kidney(185;0.00231)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		GAACGGCCCCTCTTCCTCCTC	0.582													43	63					0	0	0.002852	0	0
CHD5	26038	broad.mit.edu	37	1	6188267	6188268	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:6188267_6188268CC>TT	uc001amb.1	-	25	3841_3842	c.3741_3742GG>AA	c.(3739-3744)AAGGAC>AAAAAC	p.D1248N	CHD5_uc001alz.1_Missense_Mutation_p.D105N|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1248					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TCCTCCACGTCCTTGTTGTCAC	0.584													38	3					0	0	0.004672	0	0
UBIAD1	29914	broad.mit.edu	37	1	11333829	11333829	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:11333829C>T	uc001asg.2	+	1	575	c.241C>T	c.(241-243)CCC>TCC	p.P81S		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	81					menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		TGTCCTGGATCCCAGGCTCTT	0.597													49	59					0	0	0.003610	0	0
PTCHD2	57540	broad.mit.edu	37	1	11574475	11574475	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:11574475G>A	uc001ash.3	+	4	1483	c.1345G>A	c.(1345-1347)GAC>AAC	p.D449N	PTCHD2_uc001asi.1_Missense_Mutation_p.D449N	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	449	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TGGGGGGACAGACCTGTTTGA	0.517													52	6					0	0	0.003610	0	0
VPS13D	55187	broad.mit.edu	37	1	12371954	12371954	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:12371954A>G	uc001atv.2	+	29	7048	c.6907A>G	c.(6907-6909)AGA>GGA	p.R2303G	VPS13D_uc001atw.2_Missense_Mutation_p.R2303G|VPS13D_uc001atx.2_Missense_Mutation_p.R1491G|VPS13D_uc001aty.1_Missense_Mutation_p.R41G	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2303					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AGATCCAAAAAGAAAAGAAGG	0.378													27	31					0	0	0.006320	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12855621	12855621	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:12855621A>C	uc001auj.1	+	4	1004	c.901A>C	c.(901-903)ACT>CCT	p.T301P		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	301											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTTGGAATTAACTTATGGCTA	0.473													88	7					0	0	0.003610	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887231	12887231	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:12887231G>A	uc001auk.2	-	3	822	c.626C>T	c.(625-627)TCC>TTC	p.S209F		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	209	LRR 1.										0						CTGCTCTGGGGAAACGTAGCG	0.493													189	20					0	0	0.003610	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12942094	12942094	+	Silent	SNP	G	A	A	rs148045269	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:12942094G>A	uc001aun.2	-	3	527	c.456C>T	c.(454-456)TTC>TTT	p.F152F		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	152										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AAAGTTCTACGAACACAGTCA	0.498													209	26					0	0	0.003610	0	0
PRAMEF14	729528	broad.mit.edu	37	1	13669144	13669144	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:13669144C>T	uc009vnw.1	-	4	1225	c.1042G>A	c.(1042-1044)GAC>AAC	p.D348N		NM_001099854	NP_001093324	Q5SWL7	PRA14_HUMAN	PRAME family member 14	348											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CACAACAGGTCCTTCAGGGCA	0.542													54	73					0	0	0.003610	0	0
SLC25A34	284723	broad.mit.edu	37	1	16064662	16064662	+	Silent	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:16064662T>A	uc001axb.1	+	3	691	c.519T>A	c.(517-519)GCT>GCA	p.A173A	SLC25A34_uc009vok.1_5'Flank	NM_207348	NP_997231	Q6PIV7	S2534_HUMAN	solute carrier family 25, member 34	173	Solcar 2.|Helical; Name=4; (Potential).				transport	integral to membrane|mitochondrial inner membrane					0		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTGGTGGGGCTGTGCCCCGAG	0.662													35	2					0	0	0.004878	0	0
EPHA2	1969	broad.mit.edu	37	1	16474942	16474942	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:16474942C>T	uc001aya.1	-	3	891	c.754G>A	c.(754-756)GAG>AAG	p.E252K	EPHA2_uc010oca.1_Missense_Mutation_p.E252K	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	252	Extracellular (Potential).|Cys-rich.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	ACCAGCCACTCGCCATCCACT	0.652													58	3					0	0	0.003610	0	0
ARHGEF19	128272	broad.mit.edu	37	1	16534707	16534707	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:16534707C>T	uc001ayc.1	-	3	563	c.426G>A	c.(424-426)CGG>CGA	p.R142R	ARHGEF19_uc009voo.1_5'Flank|ARHGEF19_uc001ayb.1_5'Flank	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	142					regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		GCTGGTACACCCGCATCTTGC	0.682													20	0					0	0	0.001882	0	0
SPATA21	374955	broad.mit.edu	37	1	16736220	16736220	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:16736220C>T	uc001ayn.2	-	6	946	c.463G>A	c.(463-465)GGA>AGA	p.G155R	SPATA21_uc001ayl.1_RNA|SPATA21_uc010occ.1_Missense_Mutation_p.G132R	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21	155	Pro-rich.						calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		ACCGGGGCTCCCATGGGGGCA	0.697													10	9					0	0	0.006214	0	0
MST1P2	11209	broad.mit.edu	37	1	16976345	16976345	+	RNA	SNP	T	C	C	rs139809665	by1000genomes	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:16976345T>C	uc010och.1	+	13		c.2190T>C			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTTGCTGAATGTCATCTCCA	0.582													3	46					0	0	0.003080	0	0
IGSF21	84966	broad.mit.edu	37	1	18692055	18692055	+	Silent	SNP	G	A	A	rs35594539		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:18692055G>A	uc001bau.1	+	6	1262	c.879G>A	c.(877-879)CCG>CCA	p.P293P	IGSF21_uc001bav.1_Silent_p.P114P	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	293						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		GCCGCACCCCGAGCAGTGACG	0.632													54	7					0	0	0.003610	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809786	18809786	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:18809786G>A	uc001bax.2	+	1	2363	c.2311G>A	c.(2311-2313)GAT>AAT	p.D771N	KLHDC7A_uc009vpg.2_Intron	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	771						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCACCCCCGATTTGCCTCA	0.657													59	5					0	0	0.003610	0	0
TAS1R2	80834	broad.mit.edu	37	1	19168269	19168269	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:19168269G>A	uc001bba.1	-	5	1546	c.1545C>T	c.(1543-1545)TTC>TTT	p.F515F		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	515	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CGATGCACTCGAAGCAGCAGA	0.473													60	3					0	0	0.003610	0	0
UBR4	23352	broad.mit.edu	37	1	19445392	19445392	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:19445392G>A	uc001bbi.2	-	71	10519	c.10515C>T	c.(10513-10515)ACC>ACT	p.T3505T	UBR4_uc001bbj.1_5'Flank	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3505					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TGGGGTGGTTGGTAAGAATAT	0.423													44	6					0	0	0.003610	0	0
HSPG2	3339	broad.mit.edu	37	1	22168773	22168773	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:22168773G>A	uc001bfj.2	-	68	9051	c.9011C>T	c.(9010-9012)TCC>TTC	p.S3004F	HSPG2_uc009vqd.2_Missense_Mutation_p.S3005F	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3004	Ig-like C2-type 15.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GACTGTGAAGGAGGCTTCTTG	0.652													9	20					0	0	0.008291	0	0
CNR2	1269	broad.mit.edu	37	1	24201950	24201950	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:24201950G>A	uc001bif.2	-	2	285	c.158C>T	c.(157-159)GCT>GTT	p.A53V		NM_001841	NP_001832	P34972	CNR2_HUMAN	cannabinoid receptor 2 (macrophage)	53	Helical; Name=1; (Potential).				behavior|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	dendrite|integral to plasma membrane|perikaryon	cannabinoid receptor activity			skin(2)|central_nervous_system(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.32e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;2.9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.146)	Nabilone(DB00486)	ATAGAGCACAGCCACGTTCTC	0.562													41	2					0	0	0.003610	0	0
MYOM3	127294	broad.mit.edu	37	1	24433595	24433595	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:24433595G>A	uc001bin.3	-	4	533	c.370C>T	c.(370-372)CAG>TAG	p.Q124*	MYOM3_uc001bio.2_Nonsense_Mutation_p.Q124*|MYOM3_uc001bip.1_5'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	124	Potential.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TCCCGCCTCTGGCGCAGCAGC	0.692													10	0					0	0	0.001368	0	0
C1orf63	57035	broad.mit.edu	37	1	25573264	25573264	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:25573264G>A	uc001bjw.2	-	2	443	c.191C>T	c.(190-192)TCC>TTC	p.S64F		NM_020317	NP_064713	Q9BUV0	CA063_HUMAN	hypothetical protein LOC57035	64	Arg-rich.									pancreas(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;7.9e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;6.43e-07)|STAD - Stomach adenocarcinoma(196;0.000333)|BRCA - Breast invasive adenocarcinoma(304;0.000443)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.000932)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TCGGGAACGGGACCTGGACTT	0.657													52	4					0	0	0.003610	0	0
CCDC21	64793	broad.mit.edu	37	1	26597588	26597588	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:26597588C>T	uc001bls.1	+	10	1864	c.1733C>T	c.(1732-1734)TCG>TTG	p.S578L	CCDC21_uc001blr.2_Missense_Mutation_p.S578L|CCDC21_uc010ofa.1_Missense_Mutation_p.S527L|CCDC21_uc001blt.1_Missense_Mutation_p.S10L	NM_022778	NP_073615	Q6P2H3	CEP85_HUMAN	coiled-coil domain containing 21	578	Potential.					centrosome|nucleolus|spindle pole					0		all_cancers(24;7e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.6e-26)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;9.48e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00917)|READ - Rectum adenocarcinoma(331;0.0649)		CGATACGATTCGCTCCAAAAG	0.507													60	5					0	0	0.003610	0	0
SYTL1	84958	broad.mit.edu	37	1	27680248	27680248	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:27680248G>A	uc001bnw.1	+	15	1761	c.1594G>A	c.(1594-1596)GAG>AAG	p.E532K	SYTL1_uc001bnv.1_Missense_Mutation_p.E520K|SYTL1_uc009vsu.1_Missense_Mutation_p.E467K|SYTL1_uc009vsv.1_Missense_Mutation_p.E532K	NM_032872	NP_116261	Q8IYJ3	SYTL1_HUMAN	synaptotagmin-like 1	532					exocytosis|intracellular protein transport	extrinsic to plasma membrane|melanosome|soluble fraction	neurexin binding|Rab GTPase binding			ovary(1)	1		Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0908)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.0013)|KIRC - Kidney renal clear cell carcinoma(1967;0.00158)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		TTCCACACCTGAGGAGAAGCA	0.637													28	1					0	0	0.005443	0	0
RNF19B	127544	broad.mit.edu	37	1	33402701	33402701	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:33402701G>A	uc010oho.1	-	9	1905	c.1905C>T	c.(1903-1905)CCC>CCT	p.P635P	RNF19B_uc001bwm.3_3'UTR|RNF19B_uc010ohp.1_Silent_p.P634P	NM_153341	NP_699172	Q6ZMZ0	RN19B_HUMAN	ring finger protein 19B isoform a	635						integral to membrane	ligase activity|protein binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				GTCTGCAGGGGGGATCCTCTT	0.562													102	5					0	0	0.003610	0	0
RNF19B	127544	broad.mit.edu	37	1	33404039	33404039	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:33404039A>G	uc010oho.1	-	8	1704	c.1704T>C	c.(1702-1704)GCT>GCC	p.A568A	RNF19B_uc001bwm.3_Silent_p.A567A|RNF19B_uc010ohp.1_Silent_p.A567A	NM_153341	NP_699172	Q6ZMZ0	RN19B_HUMAN	ring finger protein 19B isoform a	568						integral to membrane	ligase activity|protein binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				AACCGGCCATAGCACGAGTGC	0.463													3	114					0	0	0.004672	0	0
CSMD2	114784	broad.mit.edu	37	1	33985159	33985159	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:33985159C>T	uc001bxn.1	-	69	10452	c.10423G>A	c.(10423-10425)GAG>AAG	p.E3475K	CSMD2_uc001bxm.1_Missense_Mutation_p.E3619K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3475	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AACTCCGCCTCGCTGGCCATG	0.612													178	8					0	0	0.003610	0	0
CSMD2	114784	broad.mit.edu	37	1	34068071	34068071	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:34068071G>A	uc001bxn.1	-	44	6643	c.6614C>T	c.(6613-6615)TCC>TTC	p.S2205F	CSMD2_uc001bxm.1_Missense_Mutation_p.S2203F|CSMD2_uc001bxo.1_Missense_Mutation_p.S1076F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2205	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACAGTCCTGGGAGCTGGAGTA	0.597													38	3					0	0	0.006999	0	0
CSMD2	114784	broad.mit.edu	37	1	34209078	34209078	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:34209078G>A	uc001bxn.1	-	14	1885	c.1856C>T	c.(1855-1857)GCC>GTC	p.A619V	CSMD2_uc001bxm.1_Missense_Mutation_p.A659V	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	619	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTCGTTGAAGGCCAGGTGGAT	0.602													67	6					0	0	0.003610	0	0
HMGB4	127540	broad.mit.edu	37	1	34330057	34330057	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:34330057G>A	uc001bxp.2	+	2	2008	c.265G>A	c.(265-267)GAT>AAT	p.D89N	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_Missense_Mutation_p.D15N	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	89						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GAGAAAGCGGGATCCCCAGGA	0.517													81	7					0	0	0.003610	0	0
DLGAP3	58512	broad.mit.edu	37	1	35365784	35365784	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:35365784C>T	uc001byc.2	-	2	1198	c.1198G>A	c.(1198-1200)GCC>ACC	p.A400T		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	400					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				TCCCCCATGGCTTTGATGTAG	0.647													77	4					0	0	0.003610	0	0
SMAP2	64744	broad.mit.edu	37	1	40879873	40879873	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:40879873C>T	uc001cfj.2	+	6	597	c.532C>T	c.(532-534)CCG>TCG	p.P178S	SMAP2_uc010ojh.1_Missense_Mutation_p.P178S|SMAP2_uc001cfk.2_Missense_Mutation_p.P148S|SMAP2_uc010oji.1_Missense_Mutation_p.P95S|SMAP2_uc010ojj.1_5'UTR	NM_022733	NP_073570	Q8WU79	SMAP2_HUMAN	small ArfGAP2	178	Interaction with clathrin heavy chains (By similarity).				regulation of ARF GTPase activity	cytoplasm|nucleus	ARF GTPase activator activity|zinc ion binding				0	Lung NSC(20;1.56e-05)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.04e-17)			GAAAAGCTCCCCGAAATCCAC	0.423													44	5					0	0	0.003610	0	0
KCNQ4	9132	broad.mit.edu	37	1	41283850	41283850	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:41283850C>T	uc001cgh.1	+	3	502	c.420C>T	c.(418-420)ATC>ATT	p.I140I	KCNQ4_uc001cgi.1_Silent_p.I140I	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	140	Helical; Name=Segment S2; (Potential).				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			TCGTGATGATCGTGGTTTTCG	0.627													58	4					0	0	0.003610	0	0
YIPF1	54432	broad.mit.edu	37	1	54332570	54332570	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:54332570G>A	uc001cvu.2	-	8	846	c.509C>T	c.(508-510)GCC>GTC	p.A170V	YIPF1_uc001cvv.2_RNA|YIPF1_uc001cvw.2_RNA|YIPF1_uc001cvx.2_RNA|YIPF1_uc001cvy.2_RNA	NM_018982	NP_061855	Q9Y548	YIPF1_HUMAN	Yip1 domain family, member 1	170	Helical; (Potential).					integral to membrane|transport vesicle				large_intestine(1)|ovary(1)	2						CCAGGCATAGGCATAGATGAT	0.453													55	2					0	0	0.003610	0	0
PCSK9	255738	broad.mit.edu	37	1	55512301	55512301	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:55512301G>A	uc001cyf.1	+	3	796	c.505G>A	c.(505-507)GAT>AAT	p.D169N	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_Intron	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	169	Peptidase S8.				cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GTACCGGGCGGATGAATACCA	0.622													185	15					0	0	0.003610	0	0
C1orf168	199920	broad.mit.edu	37	1	57254736	57254736	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:57254736G>A	uc001cym.3	-	3	1235	c.829C>T	c.(829-831)CCT>TCT	p.P277S	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.P277S	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	277										ovary(3)|skin(2)	5						GGGGGAGGAGGACCCAGGGAG	0.517													61	4					0	0	0.003610	0	0
C1orf168	199920	broad.mit.edu	37	1	57258448	57258448	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:57258448C>T	uc001cym.3	-	2	444	c.38G>A	c.(37-39)CGA>CAA	p.R13Q	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.R13Q	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	13										ovary(3)|skin(2)	5						AAATTTGGCTCGAAGTTCCTT	0.343													179	13					0	0	0.003610	0	0
C8B	732	broad.mit.edu	37	1	57397551	57397551	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:57397551C>T	uc001cyp.2	-	11	1620	c.1553G>A	c.(1552-1554)GGA>GAA	p.G518E	C8B_uc010oon.1_Missense_Mutation_p.G456E|C8B_uc010ooo.1_Missense_Mutation_p.G466E	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	518	EGF-like.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ACAGCGTGATCCTGAGAAGAC	0.502													32	3					0	0	0.004878	0	0
DAB1	1600	broad.mit.edu	37	1	57476384	57476384	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:57476384G>A	uc001cys.1	-	16	2326	c.1652C>T	c.(1651-1653)CCA>CTA	p.P551L	DAB1_uc001cyt.1_Missense_Mutation_p.P549L|DAB1_uc001cyq.1_Missense_Mutation_p.P549L|DAB1_uc001cyr.1_Missense_Mutation_p.P465L|DAB1_uc009vzw.1_Missense_Mutation_p.P533L|DAB1_uc009vzx.1_Missense_Mutation_p.P551L	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	584					cell differentiation|nervous system development					skin(2)|ovary(1)	3						ACCGGCCTGTGGACTTATATT	0.468													84	6					0	0	0.003610	0	0
DAB1	1600	broad.mit.edu	37	1	57476871	57476871	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:57476871C>T	uc001cys.1	-	15	2193	c.1519G>A	c.(1519-1521)GAC>AAC	p.D507N	DAB1_uc001cyt.1_Missense_Mutation_p.D505N|DAB1_uc001cyq.1_Missense_Mutation_p.D505N|DAB1_uc001cyr.1_Missense_Mutation_p.D421N|DAB1_uc009vzw.1_Missense_Mutation_p.D489N|DAB1_uc009vzx.1_Missense_Mutation_p.D507N	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	540					cell differentiation|nervous system development					skin(2)|ovary(1)	3						TCAAAGATGTCATCTGTGGTA	0.443													80	5					0	0	0.003610	0	0
SGIP1	84251	broad.mit.edu	37	1	67147816	67147816	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:67147816C>T	uc001dcr.2	+	15	1296	c.1079C>T	c.(1078-1080)CCC>CTC	p.P360L	SGIP1_uc010opd.1_Intron|SGIP1_uc001dcs.2_Intron|SGIP1_uc001dct.2_Intron|SGIP1_uc009wat.2_Missense_Mutation_p.P127L	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	360	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						CCCACAGGCCCCCCAGGGCCT	0.572													156	11					0	0	0.003610	0	0
C1orf173	127254	broad.mit.edu	37	1	75036996	75036996	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:75036996C>T	uc001dgg.2	-	14	4617	c.4398G>A	c.(4396-4398)CAG>CAA	p.Q1466Q		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1466	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTCCTGTCTCCTGCCTCCCAT	0.587													100	10					0	0	0.003610	0	0
CLCA4	22802	broad.mit.edu	37	1	87043668	87043668	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:87043668C>T	uc009wcs.2	+	12	2079	c.2035C>T	c.(2035-2037)CGG>TGG	p.R679W	CLCA4_uc009wct.2_Missense_Mutation_p.R442W|CLCA4_uc009wcu.2_Missense_Mutation_p.R499W	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	679						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		CTTAAAAGTTCGGGCTCATGG	0.438													32	3					0	0	0.002836	0	0
CLCA4	22802	broad.mit.edu	37	1	87043677	87043678	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:87043677_87043678GG>AA	uc009wcs.2	+	12	2088_2089	c.2044_2045GG>AA	c.(2044-2046)GGA>AAA	p.G682K	CLCA4_uc009wct.2_Missense_Mutation_p.G445K|CLCA4_uc009wcu.2_Missense_Mutation_p.G502K	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	682						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TCGGGCTCATGGAGGAGCAAAC	0.431													26	3					0	0	0.004672	0	0
HS2ST1	9653	broad.mit.edu	37	1	87570169	87570169	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:87570169T>C	uc010osk.1	+	7	1246	c.861T>C	c.(859-861)CTT>CTC	p.L287L	LOC339524_uc001dme.1_Intron	NM_012262	NP_036394	Q7LGA3	HS2ST_HUMAN	heparan sulfate 2-O-sulfotransferase 1 isoform	287	Lumenal (Potential).					Golgi membrane|integral to membrane				central_nervous_system(1)	1		Lung NSC(277;0.153)		all cancers(265;0.00699)|Epithelial(280;0.0261)		AATCTCATCTTAGGAAAACCA	0.353													65	4					0	0	0.003610	0	0
FNBP1L	54874	broad.mit.edu	37	1	93996314	93996314	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:93996314C>T	uc001dpw.2	+	7	513	c.513C>T	c.(511-513)GCC>GCT	p.A171A	FNBP1L_uc001dpv.2_Silent_p.A171A|FNBP1L_uc010otk.1_5'UTR	NM_001024948	NP_001020119	Q5T0N5	FBP1L_HUMAN	formin binding protein 1-like isoform 1	171	Induction of membrane tubulation (By similarity).|Potential.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	lipid binding				0		all_lung(203;0.00206)|Lung NSC(277;0.00902)|Melanoma(281;0.155)		all cancers(265;0.00666)|GBM - Glioblastoma multiforme(16;0.0378)|Epithelial(280;0.111)		GCCCCTAGGCCAAACAGCAGT	0.313													9	1					0	0	0.001368	0	0
ABCD3	5825	broad.mit.edu	37	1	94982685	94982685	+	Nonstop_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:94982685G>C	uc001dqn.3	+	23	2082	c.1980G>C	c.(1978-1980)TAG>TAC	p.*660Y	ABCD3_uc010oto.1_Nonstop_Mutation_p.*684Y|ABCD3_uc010otp.1_Nonstop_Mutation_p.*587Y|ABCD3_uc009wdr.2_Nonstop_Mutation_p.*550Y|ABCD3_uc001dqo.3_Nonstop_Mutation_p.*348Y	NM_002858	NP_002849	P28288	ABCD3_HUMAN	ATP-binding cassette, sub-family D, member 3	660					peroxisomal long-chain fatty acid import|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(1)	1		all_lung(203;0.000434)|Lung NSC(277;0.0019)		all cancers(265;0.0261)|Epithelial(280;0.165)		TTGGCTCTTAGAGAAATCTGG	0.343													82	5					0	0	0.003610	0	0
COL11A1	1301	broad.mit.edu	37	1	103385916	103385916	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:103385916G>A	uc001dul.2	-	49	4031	c.3713C>T	c.(3712-3714)CCA>CTA	p.P1238L	COL11A1_uc001duk.2_Missense_Mutation_p.P434L|COL11A1_uc001dum.2_Missense_Mutation_p.P1250L|COL11A1_uc001dun.2_Missense_Mutation_p.P1199L|COL11A1_uc009weh.2_Missense_Mutation_p.P1122L	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1238	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GGGTCCTTGTGGTCCCTGCAG	0.358													140	12					0	0	0.003610	0	0
KIAA1324	57535	broad.mit.edu	37	1	109731707	109731707	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:109731707A>G	uc001dwq.2	+	11	1375	c.1239A>G	c.(1237-1239)GCA>GCG	p.A413A	KIAA1324_uc009wex.1_Silent_p.A363A|KIAA1324_uc009wey.2_Silent_p.A326A|KIAA1324_uc010ovg.1_Silent_p.A311A|KIAA1324_uc001dwr.2_Silent_p.A63A	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	413	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		GCTGCCCTGCAGGGACTGAAC	0.532													65	7					0	0	0.003610	0	0
GPR61	83873	broad.mit.edu	37	1	110086229	110086229	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:110086229T>C	uc001dxy.2	+	2	1268	c.585T>C	c.(583-585)TGT>TGC	p.C195C		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	195	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		CCCCAGGCTGTTCACTCCAGT	0.572													63	0					0	0	0.003610	0	0
LRIG2	9860	broad.mit.edu	37	1	113662058	113662058	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:113662058C>T	uc001edf.1	+	17	3082	c.2884C>T	c.(2884-2886)CCG>TCG	p.P962S	LRIG2_uc009wgn.1_Missense_Mutation_p.P859S	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	962	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		GAGCCTGATACCGTCAGCCAA	0.493													33	45					0	0	0.002836	0	0
TRIM33	51592	broad.mit.edu	37	1	114942115	114942115	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:114942115G>A	uc001eew.2	-	18	3168	c.3084C>T	c.(3082-3084)GTC>GTT	p.V1028V	TRIM33_uc010owr.1_Silent_p.V642V|TRIM33_uc010ows.1_Silent_p.V660V|TRIM33_uc001eex.2_Silent_p.V1028V	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	1028	Bromo.				negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGATCAAACGGACATCGGCCA	0.343			T	RET	papillary thyroid								164	10					0	0	0.003610	0	0
DENND2C	163259	broad.mit.edu	37	1	115079237	115079237	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:115079237G>A	uc001eez.2	-	29		c.4406C>T				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAGCAAGAAGGGTGTGAACCT	0.542													54	0					0	0	0.003610	0	0
NRAS	4893	broad.mit.edu	37	1	115258681	115258681	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:115258681G>A	uc009wgu.2	-	2	355	c.101C>T	c.(100-102)CCC>CTC	p.P34L		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	34	Effector region.				activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity			haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTCTATGGTGGGATCATATTC	0.473		50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			47	2					0	0	0.003610	0	0
NGF	4803	broad.mit.edu	37	1	115829023	115829023	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:115829023C>T	uc001efu.1	-	3	563	c.394G>A	c.(394-396)GAA>AAA	p.E132K		NM_002506	NP_002497	P01138	NGF_HUMAN	nerve growth factor, beta polypeptide precursor	132					activation of MAPKK activity|activation of phospholipase C activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of cell cycle|nerve growth factor processing|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|Golgi lumen	growth factor activity|nerve growth factor receptor binding			upper_aerodigestive_tract(2)	2	Lung SC(450;0.211)	all_cancers(81;1.07e-06)|all_epithelial(167;4.43e-06)|all_lung(203;2.86e-05)|Lung NSC(69;4.99e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)	Clenbuterol(DB01407)	ACCGAGAATTCGCCCCTGTGG	0.567													44	1					0	0	0.009718	0	0
VANGL1	81839	broad.mit.edu	37	1	116225035	116225035	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:116225035C>T	uc001efv.1	+	5	1134	c.863C>T	c.(862-864)ACC>ATC	p.T288I	VANGL1_uc009wgy.1_Missense_Mutation_p.T286I	NM_138959	NP_620409	Q8TAA9	VANG1_HUMAN	vang-like 1	288	Cytoplasmic (Potential).				multicellular organismal development	integral to membrane	protein binding			central_nervous_system(1)	1	Lung SC(450;0.211)	all_cancers(81;1.24e-06)|all_epithelial(167;1.02e-06)|all_lung(203;7.95e-06)|Lung NSC(69;4.97e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		AAAGATTTCACCATCTATAAC	0.418													62	4					0	0	0.003610	0	0
SPAG17	200162	broad.mit.edu	37	1	118624248	118624248	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:118624248C>T	uc001ehk.2	-	14	1848	c.1780G>A	c.(1780-1782)GAA>AAA	p.E594K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	594						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CGTTCTACTTCATTCCAGCTC	0.458													55	4					0	0	0.003610	0	0
ADAM30	11085	broad.mit.edu	37	1	120437687	120437687	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:120437687G>A	uc001eij.2	-	1	1427	c.1273C>T	c.(1273-1275)CGG>TGG	p.R425W		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	425	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TGGCAACACCGATCTTTCTGA	0.448													516	36					0	0	0.003610	0	0
NBPF9	400818	broad.mit.edu	37	1	144815953	144815953	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:144815953A>G	uc009wig.1	+	12	1400	c.1324A>G	c.(1324-1326)AAT>GAT	p.N442D	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.N442D|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF9_uc009wii.1_Missense_Mutation_p.N171D|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.N102D	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	442	NBPF 2.					cytoplasm					0						CAACGATGACAATGAAGATGT	0.423													7	15					0	0	0.004482	0	0
NBPF9	400818	broad.mit.edu	37	1	144828599	144828599	+	Missense_Mutation	SNP	G	A	A	rs28736716		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:144828599G>A	uc009wig.1	+	23	2720	c.2644G>A	c.(2644-2646)GGA>AGA	p.G882R	NBPF9_uc010oxn.1_Missense_Mutation_p.G780R|NBPF9_uc010oxo.1_Missense_Mutation_p.G807R|NBPF9_uc010oxr.1_Missense_Mutation_p.G909R|NBPF9_uc010oxt.1_Missense_Mutation_p.G697R|NBPF9_uc001ekg.1_Missense_Mutation_p.G209R|NBPF9_uc001ekk.1_Missense_Mutation_p.G453R|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Missense_Mutation_p.G209R|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.G542R|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	882	NBPF 7.					cytoplasm					0						CTCACTGGATGGATGTTATTC	0.463													22	33					0	0	0.007291	0	0
LOC728989	728989	broad.mit.edu	37	1	146494537	146494537	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:146494537C>T	uc001epd.2	-	4	536	c.462G>A	c.(460-462)GCG>GCA	p.A154A		NR_024442				SubName: Full=cDNA FLJ59595, highly similar to Homo sapiens phosphodiesterase 4D interacting protein, transcript variant 1, mRNA;												0						TTGGCAGGGCCGCTCTCCAGA	0.567													6	25					0	0	0.006214	0	0
ACP6	51205	broad.mit.edu	37	1	147131765	147131765	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:147131765C>T	uc001epr.2	-	2	809	c.345G>A	c.(343-345)CTG>CTA	p.L115L	ACP6_uc009wjj.1_Intron	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	115					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					TGCTCACCTTCAGGGTGGTCT	0.502													125	2					0	0	0.003610	0	0
LOC645166	645166	broad.mit.edu	37	1	148932920	148932920	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:148932920G>A	uc010pbc.1	+	2		c.235G>A			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						CGTCCTGCAAGGTAAGGTCCC	0.597													11	151					0	0	0.003163	0	0
LCE1F	353137	broad.mit.edu	37	1	152748928	152748928	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:152748928G>A	uc010pdv.1	+	1	81	c.81G>A	c.(79-81)CCG>CCA	p.P27P		NM_178354	NP_848131	Q5T754	LCE1F_HUMAN	late cornified envelope 1F	27	Pro-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			gccccacaccgaagtgccccc	0.393													80	3					0	0	0.003610	0	0
LCE1B	353132	broad.mit.edu	37	1	152784973	152784973	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:152784973C>G	uc001faq.2	+	1	527	c.51C>G	c.(49-51)ATC>ATG	p.I17M		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	17	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			ccaagtgcatccccaagtgcc	0.478													144	2					0	0	0.003610	0	0
LOR	4014	broad.mit.edu	37	1	153234258	153234258	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:153234258G>A	uc001fbm.2	+	2	887	c.833G>A	c.(832-834)GGA>GAA	p.G278E		NM_000427	NP_000418	P23490	LORI_HUMAN	loricrin	278					keratinization|peptide cross-linking	cornified envelope|cytoplasm|insoluble fraction|nucleoplasm	protein binding, bridging|structural constituent of cytoskeleton				0	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGTTCCTCTGGAGGCGGCGGC	0.597													30	2					0	0	0.007291	0	0
S100A8	6279	broad.mit.edu	37	1	153362683	153362684	+	Missense_Mutation	DNP	TA	GC	GC			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:153362683_153362684TA>GC	uc001fbs.2	-	3	232_233	c.177_178TA>GC	c.(175-180)GATATC>GAGCTC	p.59_60DI>EL		NM_002964	NP_002955	P05109	S10A8_HUMAN	S100 calcium-binding protein A8	59_60	2; high affinity.|EF-hand 2.				chemotaxis	cytoplasm|cytoskeleton|plasma membrane	calcium ion binding|protein binding				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCAGTGTTGATATCCAACTCTT	0.46													44	182					0	0	0.004672	0	0
NUP210L	91181	broad.mit.edu	37	1	154090246	154090246	+	Silent	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:154090246A>T	uc001fdw.2	-	12	1647	c.1575T>A	c.(1573-1575)GTT>GTA	p.V525V	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Silent_p.V525V	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	525						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CTCGGGCCAAAACAGTACTAT	0.423													126	4					0	0	0.003610	0	0
CLK2	1196	broad.mit.edu	37	1	155239408	155239408	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:155239408G>A	uc001fjy.2	-	3	560	c.270C>T	c.(268-270)TAC>TAT	p.Y90Y	RAG1AP1_uc010pey.1_Intron|CLK2_uc001fjw.2_Silent_p.Y90Y|CLK2_uc001fjx.2_5'UTR|CLK2_uc009wqm.2_Silent_p.Y90Y	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	90						nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CTGTGTCATAGTAGGCATCTC	0.572								Other_conserved_DNA_damage_response_genes					261	9					0	0	0.003610	0	0
OR10K2	391107	broad.mit.edu	37	1	158390140	158390140	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:158390140G>A	uc010pii.1	-	1	517	c.517C>T	c.(517-519)CAA>TAA	p.Q173*		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TGATGTAGTTGATTGGAGGAA	0.463													96	4					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158645977	158645977	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:158645977G>A	uc001fst.1	-	8	1265	c.1066C>T	c.(1066-1068)CGT>TGT	p.R356C		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	356	Spectrin 4.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCCAGGGCACGAATATGCTCC	0.483													255	8					0	0	0.003610	0	0
CADM3	57863	broad.mit.edu	37	1	159163743	159163743	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:159163743G>A	uc001ftl.2	+	5	746	c.604G>A	c.(604-606)GAT>AAT	p.D202N	CADM3_uc009wsy.1_Intron|CADM3_uc001ftk.2_Missense_Mutation_p.D236N	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	202	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					TACCCGGGAGGATGATGGGGC	0.502													83	3					0	0	0.003610	0	0
FCRL6	343413	broad.mit.edu	37	1	159778147	159778147	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:159778147C>T	uc001fud.3	+	3	274	c.232C>T	c.(232-234)CGT>TGT	p.R78C	FCRL6_uc010pix.1_Missense_Mutation_p.R73C|FCRL6_uc001fuc.2_Missense_Mutation_p.R85C|FCRL6_uc009wsz.1_Missense_Mutation_p.R78C|FCRL6_uc009wta.2_Missense_Mutation_p.R78C	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	78	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					AGTGCAGAGCCGTGGCCAGTA	0.488													59	1					0	0	0.003610	0	0
FCRLA	84824	broad.mit.edu	37	1	161683039	161683039	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:161683039C>T	uc001gbe.2	+	6	1260	c.1018C>T	c.(1018-1020)CTG>TTG	p.L340L	FCRLA_uc001gbd.2_Silent_p.L334L|FCRLA_uc001gbf.2_Silent_p.L245L|FCRLA_uc001gbg.2_Silent_p.L194L|FCRLA_uc009wuo.2_Silent_p.L200L|FCRLA_uc009wup.2_Silent_p.L150L|FCRLA_uc009wuq.2_Silent_p.L99L	NM_032738	NP_116127	Q7L513	FCRLA_HUMAN	Fc receptor-like and mucin-like 1	317				L -> P (in Ref. 1; AAL27307).	cell differentiation	cytoplasm|extracellular region					0	all_cancers(52;2.55e-15)|all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00301)			AGATCCTCATCTGTATCACCA	0.567													114	3					0	0	0.003610	0	0
SH2D1B	117157	broad.mit.edu	37	1	162372562	162372562	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:162372562G>A	uc001gbz.1	-	2	287	c.165C>T	c.(163-165)ATC>ATT	p.I55I	SH2D1B_uc001gca.1_Silent_p.I55I	NM_053282	NP_444512	O14796	SH21B_HUMAN	SH2 domain containing 1B	55	SH2.									pancreas(1)	1	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			TCTCTCTGAAGATTCGGTATG	0.378													22	109					0	0	0.005443	0	0
LMX1A	4009	broad.mit.edu	37	1	165218847	165218847	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:165218847G>A	uc001gcy.1	-	3	515	c.294C>T	c.(292-294)TTC>TTT	p.F98F	LMX1A_uc001gcz.1_Silent_p.F98F	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	98	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CGATGGCCTCGAAGCAGCCCC	0.542													38	0					0	0	0.007835	0	0
UCK2	7371	broad.mit.edu	37	1	165859599	165859599	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:165859599G>A	uc001gdp.2	+	2	439	c.258G>A	c.(256-258)CCG>CCA	p.P86P	UCK2_uc010plb.1_5'UTR	NM_012474	NP_036606	Q9BZX2	UCK2_HUMAN	uridine-cytidine kinase 2	86					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity			ovary(1)	1	all_hematologic(923;0.048)|Acute lymphoblastic leukemia(8;0.155)					TTGACCACCCGGGTGAGTCGG	0.443													57	3					0	0	0.003610	0	0
DUSP27	92235	broad.mit.edu	37	1	167096085	167096085	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:167096085G>A	uc001geb.1	+	5	1717	c.1717G>A	c.(1717-1719)GAG>AAG	p.E573K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	573					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GCCCGGTGCAGAGGAGGCAGT	0.552													78	2					0	0	0.003610	0	0
SELP	6403	broad.mit.edu	37	1	169576202	169576202	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:169576202G>A	uc001ggi.3	-	9	1569	c.1504C>T	c.(1504-1506)CCT>TCT	p.P502S	SELP_uc001ggh.2_Missense_Mutation_p.P337S|SELP_uc009wvr.2_Missense_Mutation_p.P502S	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	502	Extracellular (Potential).|Sushi 5.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CATTCTGGAGGAACAGAATTC	0.433													138	4					0	0	0.003610	0	0
SELE	6401	broad.mit.edu	37	1	169699697	169699697	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:169699697C>T	uc001ggm.3	-	5	748	c.591G>A	c.(589-591)CTG>CTA	p.L197L	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	197	Sushi 1.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TGAAGTTTCCCAGTGGGTGAC	0.493													108	1					0	0	0.003610	0	0
C1orf129	80133	broad.mit.edu	37	1	170941020	170941020	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:170941020G>A	uc001ghg.2	+	8	742	c.612G>A	c.(610-612)CAG>CAA	p.Q204Q	C1orf129_uc009wvy.2_Silent_p.Q11Q|C1orf129_uc010plz.1_Silent_p.Q204Q	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	204							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CACGGTGTCAGAACGGTAAGA	0.433													256	14					0	0	0.003610	0	0
TNFSF18	8995	broad.mit.edu	37	1	173010752	173010752	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:173010752T>A	uc001giu.2	-	3	356	c.355A>T	c.(355-357)ATT>TTT	p.I119F		NM_005092	NP_005083	Q9UNG2	TNF18_HUMAN	tumor necrosis factor (ligand) superfamily,	119	Extracellular (Potential).				anti-apoptosis|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						TGGCCATAAATTAAATATAAG	0.403													248	7					0	0	0.003610	0	0
SLC9A11	284525	broad.mit.edu	37	1	173490494	173490494	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:173490494A>C	uc001giz.2	-	22	3108	c.2685T>G	c.(2683-2685)TGT>TGG	p.C895W	SLC9A11_uc009wwe.2_Missense_Mutation_p.C453W	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	895	cNMP.				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						CACCTCCTTTACAAATGGTAT	0.323													84	4					0	0	0.003610	0	0
TNN	63923	broad.mit.edu	37	1	175046622	175046622	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:175046622C>T	uc001gkl.1	+	2	181	c.68C>T	c.(67-69)TCG>TTG	p.S23L	TNN_uc010pmx.1_Missense_Mutation_p.S23L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	23					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CTGGTGGCTTCGGCCCCAGCC	0.592													100	4					0	0	0.003610	0	0
TNR	7143	broad.mit.edu	37	1	175365852	175365852	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:175365852C>T	uc001gkp.1	-	3	1149	c.1068G>A	c.(1066-1068)GTG>GTA	p.V356V	TNR_uc009wwu.1_Silent_p.V356V|TNR_uc010pmz.1_Intron	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	356	Fibronectin type-III 1.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GGTAAGAGATCACATATTCCG	0.622													28	134					0	0	0.008361	0	0
PAPPA2	60676	broad.mit.edu	37	1	176708800	176708800	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:176708800T>A	uc001gkz.2	+	13	5001	c.3837T>A	c.(3835-3837)TTT>TTA	p.F1279L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1279					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GAGCAATTTTTATTTTTTTGA	0.443													39	125					0	0	0.002522	0	0
FAM5B	57795	broad.mit.edu	37	1	177249596	177249596	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:177249596G>A	uc001glf.2	+	8	1596	c.1284G>A	c.(1282-1284)GGG>GGA	p.G428G	FAM5B_uc001glg.2_Silent_p.G323G	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	428						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TCTACTGTGGGGAAAGCACCT	0.542													118	3					0	0	0.003610	0	0
SEC16B	89866	broad.mit.edu	37	1	177908848	177908848	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:177908848C>T	uc001gli.1	-	18	2282	c.2192G>A	c.(2191-2193)GGA>GAA	p.G731E	SEC16B_uc001glk.1_Missense_Mutation_p.G408E|SEC16B_uc009wwy.1_Missense_Mutation_p.G286E|SEC16B_uc001glh.1_Missense_Mutation_p.G390E|SEC16B_uc009wwz.1_Missense_Mutation_p.G390E|SEC16B_uc001glj.1_Missense_Mutation_p.G732E	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	731					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						TGTTGTTGTTCCTCCGGCTCC	0.418													14	1					0	0	0.004990	0	0
ANGPTL1	9068	broad.mit.edu	37	1	178820428	178820428	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:178820428C>T	uc001gma.2	-	6	1788	c.1312G>A	c.(1312-1314)GGA>AGA	p.G438R	RALGPS2_uc001gly.1_Intron|RALGPS2_uc001glz.2_Intron|RALGPS2_uc010pnb.1_Intron|ANGPTL1_uc001gmb.2_Missense_Mutation_p.G438R	NM_004673	NP_004664	O95841	ANGL1_HUMAN	angiopoietin-like 1 precursor	438	Fibrinogen C-terminal.					extracellular space	receptor binding				0						CACCAGCCTCCTTTATGAAAG	0.403													17	86					0	0	0.007413	0	0
XPR1	9213	broad.mit.edu	37	1	180832944	180832944	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:180832944G>T	uc001goi.2	+	12	1794	c.1602G>T	c.(1600-1602)TGG>TGT	p.W534C	XPR1_uc009wxn.2_Missense_Mutation_p.W469C	NM_004736	NP_004727	Q9UBH6	XPR1_HUMAN	xenotropic and polytropic retrovirus receptor	534	EXS.|Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0						AGATGGACTGGGGTCTCTTCG	0.418													8	211					0.00448238	0.00706789	0.004482	1	0
CACNA1E	777	broad.mit.edu	37	1	181686331	181686331	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:181686331T>G	uc001gow.2	+	11	1583	c.1418T>G	c.(1417-1419)GTT>GGT	p.V473G	CACNA1E_uc009wxs.2_Missense_Mutation_p.V380G	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	473	Cytoplasmic (Potential).|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CGCCACATGGTTAAATCCCAG	0.537													137	3					0	0	0.003610	0	0
CACNA1E	777	broad.mit.edu	37	1	181702848	181702848	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:181702848C>T	uc001gow.2	+	21	3389	c.3224C>T	c.(3223-3225)CCC>CTC	p.P1075L	CACNA1E_uc009wxs.2_Missense_Mutation_p.P963L|CACNA1E_uc001gox.1_Missense_Mutation_p.P301L|CACNA1E_uc009wxt.2_Missense_Mutation_p.P301L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1075	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTCGCCATCCCCGACGTGGAC	0.652													11	44					0	0	0.001855	0	0
HMCN1	83872	broad.mit.edu	37	1	186062788	186062788	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:186062788G>A	uc001grq.1	+	66	10412	c.10183G>A	c.(10183-10185)GGA>AGA	p.G3395R		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3395	Ig-like C2-type 32.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ACTGGCAGCAGGACAAGTTAT	0.433													37	126					0	0	0.009718	0	0
FAM5C	339479	broad.mit.edu	37	1	190067264	190067264	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:190067264G>A	uc001gse.1	-	8	2417	c.2185C>T	c.(2185-2187)CGT>TGT	p.R729C	FAM5C_uc010pot.1_Missense_Mutation_p.R627C	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	729						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AGTCTATGACGAAGCAAGCAA	0.463													56	128					0	0	0.003610	0	0
FAM5C	339479	broad.mit.edu	37	1	190067595	190067595	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:190067595C>T	uc001gse.1	-	8	2086	c.1854G>A	c.(1852-1854)TGG>TGA	p.W618*	FAM5C_uc010pot.1_Nonsense_Mutation_p.W516*	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	618						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AAAATGTCTTCCATTTGTTCC	0.433													484	26					0	0	0.003610	0	0
RGS21	431704	broad.mit.edu	37	1	192321268	192321268	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:192321268G>A	uc001gsh.2	+	4	354	c.180G>A	c.(178-180)ACG>ACA	p.T60T		NM_001039152	NP_001034241	Q2M5E4	RGS21_HUMAN	regulator of G-protein signaling 21	60	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|skin(1)	2						TTAAGAAAACGAAAAATGCAG	0.353													74	2					0	0	0.003610	0	0
KCNT2	343450	broad.mit.edu	37	1	196309516	196309516	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:196309516G>A	uc001gtd.1	-	16	1798	c.1738C>T	c.(1738-1740)CAT>TAT	p.H580Y	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.H530Y|KCNT2_uc001gtf.1_Missense_Mutation_p.H580Y|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.H580Y|KCNT2_uc001gth.1_Missense_Mutation_p.H101Y	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	580	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GAAGGTCCATGATAAAACGAC	0.289													131	10					0	0	0.003610	0	0
F13B	2165	broad.mit.edu	37	1	197026252	197026252	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:197026252A>G	uc001gtt.1	-	7	1106	c.1062T>C	c.(1060-1062)TAT>TAC	p.Y354Y		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	354	Sushi 6.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CCCCATTGTAATAAATCTTAG	0.413													103	3					0	0	0.003610	0	0
ZBTB41	360023	broad.mit.edu	37	1	197159928	197159928	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:197159928G>A	uc001gtx.1	-	3	1431	c.1362C>T	c.(1360-1362)TCC>TCT	p.S454S	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	454					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						TCTTCTTAATGGAAATAAATT	0.279													29	0					0	0	0.002445	0	0
ZBTB41	360023	broad.mit.edu	37	1	197160868	197160868	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:197160868T>A	uc001gtx.1	-	2	1351	c.1282A>T	c.(1282-1284)AAT>TAT	p.N428Y	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	428	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						TGAAGTTTATTACAATAAGGG	0.343													27	33					0	0	0.005443	0	0
CRB1	23418	broad.mit.edu	37	1	197390648	197390648	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:197390648G>A	uc001gtz.2	+	6	1825	c.1690G>A	c.(1690-1692)GAT>AAT	p.D564N	CRB1_uc010poz.1_Missense_Mutation_p.D495N|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.D452N|CRB1_uc010ppb.1_Missense_Mutation_p.D564N|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.D45N|CRB1_uc001gub.1_Missense_Mutation_p.D213N	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	564	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CAACACCAGCGATGGAGAGTG	0.458													231	9					0	0	0.003610	0	0
CACNA1S	779	broad.mit.edu	37	1	201060870	201060870	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:201060870G>A	uc001gvv.2	-	5	819	c.592C>T	c.(592-594)CAC>TAC	p.H198Y		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	198	I.|Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AGGGCGATGTGAAAGAGGGGG	0.552													62	1					0	0	0.003610	0	0
SOX13	9580	broad.mit.edu	37	1	204093774	204093774	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:204093774C>T	uc001ham.2	+	13	1976	c.1381C>T	c.(1381-1383)CGC>TGC	p.R461C	SOX13_uc010pqp.1_Missense_Mutation_p.R460C|SOX13_uc010pqq.1_Missense_Mutation_p.R328C	NM_005686	NP_005677	Q9UN79	SOX13_HUMAN	SRY-box 13	461	HMG box.				anatomical structure morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2	all_cancers(21;0.0754)|Breast(84;0.116)|all_epithelial(62;0.189)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)			GTCAGGATCTCGCTGGAAGTC	0.607													20	0					0	0	0.002780	0	0
NFASC	23114	broad.mit.edu	37	1	204943867	204943867	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:204943867C>T	uc001hbj.2	+	14	1802	c.1474C>T	c.(1474-1476)CGC>TGC	p.R492C	NFASC_uc001hbh.2_Missense_Mutation_p.R492C|NFASC_uc010pqz.1_Missense_Mutation_p.R486C|NFASC_uc010pra.1_Missense_Mutation_p.R503C|NFASC_uc001hbi.2_Missense_Mutation_p.R503C|NFASC_uc010prb.1_Missense_Mutation_p.R503C|NFASC_uc010prc.1_Missense_Mutation_p.R59C|NFASC_uc001hbk.1_Missense_Mutation_p.R313C	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	492	Extracellular (Potential).|Ig-like C2-type 5.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TAAGATGATCCGCAAAGAGGA	0.507													181	7					0	0	0.003610	0	0
PM20D1	148811	broad.mit.edu	37	1	205813229	205813229	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:205813229C>T	uc001hdj.2	-	5	738	c.693G>A	c.(691-693)AAG>AAA	p.K231K	PM20D1_uc009xbr.2_RNA	NM_152491	NP_689704	Q6GTS8	P20D1_HUMAN	peptidase M20 domain containing 1 precursor	231						extracellular region	metal ion binding|peptidase activity			skin(1)	1	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			CGATGGGCTTCTTGAAGTTAG	0.537													193	5					0	0	0.003610	0	0
CR2	1380	broad.mit.edu	37	1	207646436	207646436	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:207646436T>G	uc001hfw.2	+	10	1984	c.1890T>G	c.(1888-1890)TGT>TGG	p.C630W	CR2_uc001hfv.2_Missense_Mutation_p.C630W|CR2_uc009xch.2_Missense_Mutation_p.C630W|CR2_uc009xci.1_Missense_Mutation_p.C115W	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	630	Sushi 10.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CATTCAAGTGTTATAGTGGAT	0.408													129	6					0	0	0.003610	0	0
C1orf74	148304	broad.mit.edu	37	1	209956583	209956583	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:209956583G>A	uc001hhp.1	-	2	640	c.397C>T	c.(397-399)CAG>TAG	p.Q133*		NM_152485	NP_689698	Q96LT6	CA074_HUMAN	hypothetical protein LOC148304	133										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0328)		TTCAAGTCCTGAAGCTGGTCC	0.547													37	43					0	0	0.005524	0	0
RPS6KC1	26750	broad.mit.edu	37	1	213434904	213434904	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:213434904T>C	uc010ptr.1	+	13	3074	c.2915T>C	c.(2914-2916)GTT>GCT	p.V972A	RPS6KC1_uc001hkd.2_Missense_Mutation_p.V960A|RPS6KC1_uc010pts.1_Missense_Mutation_p.V760A|RPS6KC1_uc010ptt.1_Missense_Mutation_p.V760A|RPS6KC1_uc010ptu.1_Missense_Mutation_p.V791A|RPS6KC1_uc010ptv.1_Missense_Mutation_p.V507A|RPS6KC1_uc001hke.2_Missense_Mutation_p.V791A	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	972	Protein kinase 2.				cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		TGGTTAGAGGTTGGAGCAATC	0.403													428	14					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	215972453	215972453	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:215972453G>A	uc001hku.1	-	50	10141	c.9754C>T	c.(9754-9756)CCA>TCA	p.P3252S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3252	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGTTCATCTGGACAGCATACT	0.403										HNSCC(13;0.011)			56	3					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	216497555	216497555	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:216497555C>T	uc001hku.1	-	7	1670	c.1283G>A	c.(1282-1284)GGA>GAA	p.G428E	USH2A_uc001hkv.2_Missense_Mutation_p.G428E	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	428	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTCCAAATCTCCATTGTTTTT	0.318										HNSCC(13;0.011)			57	1					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	216595659	216595659	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:216595659G>A	uc001hku.1	-	2	407	c.20C>T	c.(19-21)TCA>TTA	p.S7L	USH2A_uc001hkv.2_Missense_Mutation_p.S7L	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	7					maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGAGCCCAATGAAAGAACTGG	0.408										HNSCC(13;0.011)			82	4					0	0	0.003610	0	0
ESRRG	2104	broad.mit.edu	37	1	216850662	216850662	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:216850662C>T	uc001hkw.1	-	2	394	c.228G>A	c.(226-228)CAG>CAA	p.Q76Q	ESRRG_uc001hky.1_Silent_p.Q53Q|ESRRG_uc009xdp.1_Silent_p.Q53Q|ESRRG_uc001hkz.1_Silent_p.Q53Q|ESRRG_uc010puc.1_Silent_p.Q53Q|ESRRG_uc001hla.1_Silent_p.Q53Q|ESRRG_uc001hlb.1_Silent_p.Q53Q|ESRRG_uc010pud.1_Intron|ESRRG_uc001hlc.1_Silent_p.Q53Q|ESRRG_uc001hld.1_Silent_p.Q53Q|ESRRG_uc001hkx.1_Silent_p.Q81Q|ESRRG_uc009xdo.1_Silent_p.Q53Q|ESRRG_uc001hle.1_Silent_p.Q53Q	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	76					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	CAAGTCCGTTCTGATGGCCAT	0.572													91	2					0	0	0.003610	0	0
SRP9	6726	broad.mit.edu	37	1	225971047	225971047	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:225971047G>C	uc001hpg.2	+	2	246	c.118G>C	c.(118-120)GTT>CTT	p.V40L	SRP9_uc001hpf.3_RNA|SRP9_uc001hph.2_Missense_Mutation_p.V40L|SRP9_uc001hpi.3_RNA|SRP9_uc001hpj.1_Intron	NM_003133	NP_003124	P49458	SRP09_HUMAN	signal recognition particle 9kDa isoform 2	40					negative regulation of translational elongation|SRP-dependent cotranslational protein targeting to membrane	cytosol|signal recognition particle receptor complex|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|signal recognition particle binding				0						GAACTTGTGTGTTAAAGTAAC	0.269													153	4					0	0	0.003610	0	0
LEFTY1	10637	broad.mit.edu	37	1	226076643	226076643	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:226076643T>G	uc001hpo.2	-	1	194	c.124A>C	c.(124-126)ACC>CCC	p.T42P	LEFTY1_uc010pvj.1_Intron|LEFTY1_uc009xej.1_Missense_Mutation_p.T42P	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	42					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					CTGTCCAGGGTGGGCACCTCT	0.731													17	1					0	0	0.002299	0	0
PRSS38	339501	broad.mit.edu	37	1	228003849	228003849	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:228003849G>A	uc001hrh.2	+	2	207	c.207G>A	c.(205-207)AGG>AGA	p.R69R		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	69	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						CGCCCGAGAGGAAGTGGCCGT	0.667													145	6					0	0	0.003610	0	0
URB2	9816	broad.mit.edu	37	1	229773816	229773816	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:229773816C>T	uc001hts.1	+	4	3592	c.3456C>T	c.(3454-3456)GCC>GCT	p.A1152A	URB2_uc009xfd.1_Silent_p.A1152A	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	1152						nucleolus				central_nervous_system(2)|ovary(1)	3						CCCATGTTGCCCTCTACCAGG	0.562													73	3					0	0	0.003610	0	0
DISC1	27185	broad.mit.edu	37	1	231954091	231954091	+	Silent	SNP	G	A	A	rs117884450	by1000genomes	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:231954091G>A	uc001huz.2	+	9	1862	c.1809G>A	c.(1807-1809)ACG>ACA	p.T603T	TSNAX-DISC1_uc010pwg.1_Silent_p.T592T|TSNAX-DISC1_uc010pwh.1_Silent_p.T558T|TSNAX-DISC1_uc010pwi.1_Silent_p.T558T|TSNAX-DISC1_uc010pwj.1_Silent_p.T592T|TSNAX-DISC1_uc010pwk.1_Missense_Mutation_p.R558Q|TSNAX-DISC1_uc010pwl.1_RNA|DISC1_uc010pwr.1_Silent_p.T603T|DISC1_uc010pws.1_Missense_Mutation_p.R569Q|DISC1_uc010pwt.1_Missense_Mutation_p.G551S|DISC1_uc010pwu.1_Missense_Mutation_p.G201S|DISC1_uc010pwv.1_RNA|DISC1_uc010pww.1_Silent_p.T603T|DISC1_uc010pwx.1_RNA|DISC1_uc010pwy.1_RNA|DISC1_uc010pwz.1_RNA|DISC1_uc010pxa.1_RNA|DISC1_uc001huy.2_Silent_p.T603T|DISC1_uc010pxb.1_Silent_p.T603T|DISC1_uc010pxc.1_Intron|DISC1_uc010pxd.1_Silent_p.T248T|DISC1_uc010pxe.1_Silent_p.T603T|DISC1_uc009xfr.2_Silent_p.T558T|DISC1_uc010pxf.1_Silent_p.T603T|DISC1_uc010pxg.1_Intron|DISC1_uc010pxh.1_Silent_p.T635T|DISC1_uc010pxi.1_RNA|DISC1_uc010pxj.1_Silent_p.T248T|DISC1_uc010pxk.1_RNA|DISC1_uc010pxl.1_RNA|DISC1_uc010pxm.1_Silent_p.T481T|DISC1_uc010pxn.1_Silent_p.T248T|DISC1_uc001hva.2_Silent_p.T603T|DISC2_uc001hvd.2_RNA	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L	603	Potential.|Necessary and sufficient for interaction with PCNT and localization at the centrosome.|Interaction with TRAF3IP1.|Interaction with ATF4 and ATF5.				microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				ATTTCTGGACGGCTAAAGACC	0.478													35	143					0	0	0.004289	0	0
PCNXL2	80003	broad.mit.edu	37	1	233134073	233134073	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:233134073C>T	uc001hvl.2	-	32	5950	c.5715G>A	c.(5713-5715)CAG>CAA	p.Q1905Q	PCNXL2_uc001hvk.1_Silent_p.Q557Q|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1905						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CGCTGCTCTCCTGGCTGCCAC	0.627													57	1					0	0	0.003610	0	0
NID1	4811	broad.mit.edu	37	1	236212091	236212091	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:236212091A>G	uc001hxo.2	-	2	526	c.424T>C	c.(424-426)TTC>CTC	p.F142L	NID1_uc009xgd.2_Missense_Mutation_p.F142L	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	142	NIDO.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	ATCTCCGGGAACCCTCTGTGG	0.587													38	40					0	0	0.006230	0	0
RYR2	6262	broad.mit.edu	37	1	237995876	237995876	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:237995876C>T	uc001hyl.1	+	105	14953	c.14833C>T	c.(14833-14835)CAA>TAA	p.Q4945*	RYR2_uc010pyb.1_3'UTR	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4945					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAAGATGTATCAAGAAAGGTG	0.383													47	4					0	0	0.003610	0	0
FMN2	56776	broad.mit.edu	37	1	240371124	240371124	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:240371124C>T	uc010pyd.1	+	5	3237	c.3012C>T	c.(3010-3012)CCC>CCT	p.P1004P	FMN2_uc010pye.1_Silent_p.P1008P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1004	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCACTTCCCGGAGCGGGCA	0.721													18	37					0	0	0.004656	0	0
GREM2	64388	broad.mit.edu	37	1	240656347	240656347	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:240656347G>A	uc001hys.2	-	2	709	c.429C>T	c.(427-429)CCC>CCT	p.P143P		NM_022469	NP_071914	Q9H772	GREM2_HUMAN	gremlin 2 precursor	143	CTCK.				BMP signaling pathway	extracellular space	cytokine activity				0		all_cancers(173;0.0196)	OV - Ovarian serous cystadenocarcinoma(106;0.0123)			TGAGTCGGAAGGGTGGGTCCA	0.637													107	1					0	0	0.003610	0	0
KMO	8564	broad.mit.edu	37	1	241755436	241755436	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:241755436C>T	uc009xgp.2	+	15	1507	c.1442C>T	c.(1441-1443)TCC>TTC	p.S481F		NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	481					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			GAACAAATTTCCAATCTCATT	0.418													42	2					0	0	0.009718	0	0
PLD5	200150	broad.mit.edu	37	1	242271122	242271122	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:242271122C>T	uc001hzn.1	-	8	1217	c.1090G>A	c.(1090-1092)GAT>AAT	p.D364N	PLD5_uc001hzl.3_Missense_Mutation_p.D302N|PLD5_uc001hzm.3_Missense_Mutation_p.D154N|PLD5_uc001hzo.1_Missense_Mutation_p.D272N			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	364						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			ATTTTTGCATCCAAGTCTGGC	0.348													23	147					0	0	0.001882	0	0
SCCPDH	51097	broad.mit.edu	37	1	246903475	246903475	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:246903475T>A	uc001ibr.2	+	4	733	c.386T>A	c.(385-387)TTT>TAT	p.F129Y		NM_016002	NP_057086	Q8NBX0	SCPDH_HUMAN	saccharopine dehydrogenase (putative)	129						midbody	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity			ovary(1)	1	all_cancers(71;6.8e-05)|all_epithelial(71;7.93e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0545)|Lung NSC(105;0.0618)	all_cancers(173;0.0343)	OV - Ovarian serous cystadenocarcinoma(106;0.00323)	GBM - Glioblastoma multiforme(49;0.0896)		ATTTTTTAGTTTCTGGAACTA	0.343													105	2					0	0	0.003610	0	0
NLRP3	114548	broad.mit.edu	37	1	247582364	247582364	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:247582364G>A	uc001icr.2	+	3	406	c.268G>A	c.(268-270)GAT>AAT	p.D90N	NLRP3_uc001ics.2_Missense_Mutation_p.D90N|NLRP3_uc001icu.2_Missense_Mutation_p.D90N|NLRP3_uc001icw.2_Missense_Mutation_p.D90N|NLRP3_uc001icv.2_Missense_Mutation_p.D90N|NLRP3_uc010pyw.1_Missense_Mutation_p.D88N|NLRP3_uc001ict.1_Missense_Mutation_p.D88N	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	90	DAPIN.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AGCAAAAAGAGATGAGCCGAA	0.348													50	2					0	0	0.003610	0	0
NLRP3	114548	broad.mit.edu	37	1	247587682	247587682	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:247587682G>A	uc001icr.2	+	5	1075	c.937G>A	c.(937-939)GAG>AAG	p.E313K	NLRP3_uc001ics.2_Missense_Mutation_p.E313K|NLRP3_uc001icu.2_Missense_Mutation_p.E313K|NLRP3_uc001icw.2_Missense_Mutation_p.E313K|NLRP3_uc001icv.2_Missense_Mutation_p.E313K|NLRP3_uc010pyw.1_Missense_Mutation_p.E311K|NLRP3_uc001ict.1_Missense_Mutation_p.E311K	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	313	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding	p.E313D(1)		lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TGCCTTTGACGAGCACATAGG	0.577													125	6					0	0	0.003610	0	0
OR2C3	81472	broad.mit.edu	37	1	247695083	247695083	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:247695083G>A	uc009xgy.2	-	2	1093	c.731C>T	c.(730-732)TCC>TTC	p.S244F	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AGCCACGTGGGAAGAACAGGT	0.557													56	74					0	0	0.003610	0	0
OR2C3	81472	broad.mit.edu	37	1	247695172	247695172	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:247695172G>A	uc009xgy.2	-	2	1004	c.642C>T	c.(640-642)CTC>CTT	p.L214L	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AGACCAGGATGAGCCCCAGAG	0.547													74	2					0	0	0.003610	0	0
C1orf150	148823	broad.mit.edu	37	1	247737503	247737503	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:247737503C>T	uc001idf.2	+	5	272	c.227C>T	c.(226-228)CCC>CTC	p.P76L	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	76											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AATCACATCCCCCATCAGAGA	0.453													114	1					0	0	0.003610	0	0
OR6F1	343169	broad.mit.edu	37	1	247875604	247875604	+	Missense_Mutation	SNP	C	A	A	rs138812909	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:247875604C>A	uc001idj.1	-	1	454	c.454G>T	c.(454-456)GGT>TGT	p.G152C		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GCCACGAAACCACACACCCAG	0.582													56	85					7.82978e-24	1.24666e-23	0.003610	1	0
OR6F1	343169	broad.mit.edu	37	1	247875848	247875848	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:247875848C>T	uc001idj.1	-	1	210	c.210G>A	c.(208-210)GAG>GAA	p.E70E		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TATACCAAATCTCCAGGAAGG	0.473													130	2					0	0	0.003610	0	0
OR1C1	26188	broad.mit.edu	37	1	247921673	247921673	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:247921673G>A	uc010pza.1	-	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CCAGAAGGACGAATTCCCTGA	0.408													18	39					0	0	0.007413	0	0
OR2L1P	26247	broad.mit.edu	37	1	248153829	248153829	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:248153829G>A	uc001idv.1	+	1	261	c.17G>A	c.(16-18)GGA>GAA	p.G6E	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						TTTCTGTATGGAAACAAGTCT	0.423													248	6					0	0	0.003610	0	0
OR2L3	391192	broad.mit.edu	37	1	248224664	248224664	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:248224664G>A	uc001idx.1	+	1	681	c.681G>A	c.(679-681)ATG>ATA	p.M227I	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TCTACCACATGAAATCTGCAG	0.468													285	8					0	0	0.003610	0	0
OR2M4	26245	broad.mit.edu	37	1	248402794	248402794	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:248402794C>T	uc010pzh.1	+	1	564	c.564C>T	c.(562-564)TCC>TCT	p.S188S		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TACCTCTATCCTGCACAGAAA	0.403													194	5					0	0	0.003610	0	0
OR2M7	391196	broad.mit.edu	37	1	248487244	248487244	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:248487244G>A	uc010pzk.1	-	1	627	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTGCAACAGGGAAAACAAGCA	0.418													434	15					0	0	0.003610	0	0
AKR1C4	1109	broad.mit.edu	37	10	5248263	5248263	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:5248263G>A	uc001ihw.2	+	5	506	c.473G>A	c.(472-474)GGA>GAA	p.G158E		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	158					androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	AAGGATGCAGGATTGGCCAAG	0.488													38	36					0	0	0.004878	0	0
PRKCQ	5588	broad.mit.edu	37	10	6527122	6527122	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:6527122C>T	uc001ijj.1	-	10	1085	c.1010G>A	c.(1009-1011)GGA>GAA	p.G337E	PRKCQ_uc009xim.1_Missense_Mutation_p.G337E|PRKCQ_uc001iji.1_Missense_Mutation_p.G370E|PRKCQ_uc009xin.1_Missense_Mutation_p.G301E|PRKCQ_uc010qax.1_Missense_Mutation_p.G212E	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	337					axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						ACCTCTTTTTCCCGGTGTCGG	0.433													86	90					0	0	0.003610	0	0
ITIH5	80760	broad.mit.edu	37	10	7618605	7618605	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:7618605C>T	uc001ijq.2	-	10	1868	c.1789G>A	c.(1789-1791)GAG>AAG	p.E597K	ITIH5_uc001ijp.2_Missense_Mutation_p.E383K|ITIH5_uc001ijr.1_Missense_Mutation_p.E597K	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	597					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CGCTCCTTCTCCGGTTCATCG	0.637													13	25					0	0	0.002299	0	0
FRMD4A	55691	broad.mit.edu	37	10	13698879	13698879	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:13698879G>A	uc001ims.2	-	22	3062	c.2710C>T	c.(2710-2712)CTG>TTG	p.L904L	FRMD4A_uc009xjf.1_Silent_p.L904L	NM_018027	NP_060497	Q9P2Q2	FRM4A_HUMAN	FERM domain containing 4A	904						cytoplasm|cytoskeleton	binding			ovary(1)|skin(1)|pancreas(1)	3						GGAGTCCGCAGGATCTGCGAT	0.746													5	1					0	0	0.000602	0	0
CUBN	8029	broad.mit.edu	37	10	16882450	16882450	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:16882450G>A	uc001ioo.2	-	62	9963	c.9911C>T	c.(9910-9912)TCC>TTC	p.S3304F		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3304	CUB 25.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AGTACAGATGGAAAATGGGAC	0.473													14	18					0	0	0.001855	0	0
CUBN	8029	broad.mit.edu	37	10	17152983	17152983	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:17152983G>A	uc001ioo.2	-	9	1002	c.950C>T	c.(949-951)TCT>TTT	p.S317F		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	317	EGF-like 4; calcium-binding (Potential).				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TGGAGCCACAGAACAGCCGCC	0.493													21	23					0	0	0.004656	0	0
KIAA1217	56243	broad.mit.edu	37	10	24669980	24669980	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:24669980G>A	uc001iru.3	+	3	940	c.537G>A	c.(535-537)ACG>ACA	p.T179T	KIAA1217_uc001irs.2_Silent_p.T99T|KIAA1217_uc001irt.3_Silent_p.T179T|KIAA1217_uc010qcy.1_Silent_p.T179T|KIAA1217_uc010qcz.1_Silent_p.T179T|KIAA1217_uc001irv.1_Silent_p.T29T|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	179					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CCAACCAGACGAAAGAAAGAT	0.478													25	35					0	0	0.004656	0	0
KIAA1217	56243	broad.mit.edu	37	10	24809118	24809118	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:24809118G>A	uc001iru.3	+	11	2647	c.2244G>A	c.(2242-2244)CTG>CTA	p.L748L	KIAA1217_uc001irs.2_Silent_p.L668L|KIAA1217_uc001irt.3_Silent_p.L713L|KIAA1217_uc010qcy.1_Silent_p.L713L|KIAA1217_uc010qcz.1_Silent_p.L713L|KIAA1217_uc001irv.1_Silent_p.L563L|KIAA1217_uc010qda.1_Intron|KIAA1217_uc001irw.2_Silent_p.L431L|KIAA1217_uc001irz.2_Silent_p.L431L|KIAA1217_uc001irx.2_Silent_p.L431L|KIAA1217_uc001iry.2_Silent_p.L431L	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	748					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TGGTTACTCTGAAAGACGTGG	0.552													75	92					0	0	0.003610	0	0
KIAA1217	56243	broad.mit.edu	37	10	24816960	24816960	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:24816960C>T	uc001iru.3	+	14	3397	c.2994C>T	c.(2992-2994)ATC>ATT	p.I998I	KIAA1217_uc001irs.2_Silent_p.I918I|KIAA1217_uc001irt.3_Silent_p.I963I|KIAA1217_uc010qcy.1_Silent_p.I963I|KIAA1217_uc010qcz.1_Silent_p.I963I|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Silent_p.I681I|KIAA1217_uc001irz.2_Silent_p.I681I|KIAA1217_uc001irx.2_Silent_p.I681I|KIAA1217_uc001iry.2_Silent_p.I681I	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	998					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGGCCAATATCATGAAGTCAA	0.478													40	46					0	0	0.009718	0	0
GPR158	57512	broad.mit.edu	37	10	25701203	25701203	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:25701203C>T	uc001isj.2	+	4	1196	c.1136C>T	c.(1135-1137)TCA>TTA	p.S379L		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	379	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CAGCATATTTCAGGAAGTACA	0.468													48	64					0	0	0.003610	0	0
ACBD5	91452	broad.mit.edu	37	10	27499923	27499923	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:27499923G>A	uc010qdp.1	-	9	1215	c.1024C>T	c.(1024-1026)CGT>TGT	p.R342C	ACBD5_uc010qdm.1_Missense_Mutation_p.R340C|ACBD5_uc010qdn.1_Missense_Mutation_p.R233C|ACBD5_uc010qdo.1_Missense_Mutation_p.R165C|ACBD5_uc001ito.2_Missense_Mutation_p.R307C|ACBD5_uc001itp.2_Missense_Mutation_p.R233C|ACBD5_uc001itq.2_Missense_Mutation_p.R233C|ACBD5_uc001itr.1_Missense_Mutation_p.R131C	NM_145698	NP_663736	Q5T8D3	ACBD5_HUMAN	acyl-Coenzyme A binding domain containing 5	351					transport	integral to membrane|peroxisomal membrane	fatty-acyl-CoA binding				0						ATATCTTCACGAAATCCAGAA	0.418													71	76					0	0	0.003610	0	0
ARMC4	55130	broad.mit.edu	37	10	28196667	28196667	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:28196667G>A	uc009xky.2	-	17	2633	c.2535C>T	c.(2533-2535)TCC>TCT	p.S845S	ARMC4_uc010qds.1_Silent_p.S370S|ARMC4_uc010qdt.1_Silent_p.S537S|ARMC4_uc001itz.2_Silent_p.S845S	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	845	ARM 6.						binding			ovary(4)|skin(2)	6						TTTTCAGCAGGGACCACAACA	0.433													21	26					0	0	0.004656	0	0
ARMC4	55130	broad.mit.edu	37	10	28196681	28196681	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:28196681G>A	uc009xky.2	-	17	2619	c.2521C>T	c.(2521-2523)CGT>TGT	p.R841C	ARMC4_uc010qds.1_Missense_Mutation_p.R366C|ARMC4_uc010qdt.1_Missense_Mutation_p.R533C|ARMC4_uc001itz.2_Missense_Mutation_p.R841C	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	841	ARM 6.						binding			ovary(4)|skin(2)	6						CACAACAAACGAACTCCATCT	0.423													23	23					0	0	0.007291	0	0
ARMC4	55130	broad.mit.edu	37	10	28225794	28225794	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:28225794C>T	uc009xky.2	-	15	2211	c.2113G>A	c.(2113-2115)GAA>AAA	p.E705K	ARMC4_uc010qds.1_Missense_Mutation_p.E230K|ARMC4_uc010qdt.1_Missense_Mutation_p.E397K|ARMC4_uc001itz.2_Missense_Mutation_p.E705K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	705							binding			ovary(4)|skin(2)	6						TCCCGGGTTTCCTTATCTTCA	0.488													21	25					0	0	0.010504	0	0
ARMC4	55130	broad.mit.edu	37	10	28283985	28283985	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:28283985C>T	uc009xky.2	-	2	185	c.87G>A	c.(85-87)GCG>GCA	p.A29A	ARMC4_uc001itz.2_Silent_p.A29A	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	29							binding			ovary(4)|skin(2)	6						CTTTCAATATCGCTTCATTTA	0.433													16	29					0	0	0.006122	0	0
ARMC4	55130	broad.mit.edu	37	10	28284003	28284003	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:28284003G>A	uc009xky.2	-	2	167	c.69C>T	c.(67-69)ATC>ATT	p.I23I	ARMC4_uc001itz.2_Silent_p.I23I	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	23							binding			ovary(4)|skin(2)	6						TTAGAGGGGTGATTTCGAGGA	0.448													16	32					0	0	0.006122	0	0
ARMC4	55130	broad.mit.edu	37	10	28284008	28284008	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:28284008C>T	uc009xky.2	-	2	162	c.64G>A	c.(64-66)GAA>AAA	p.E22K	ARMC4_uc001itz.2_Missense_Mutation_p.E22K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	22							binding			ovary(4)|skin(2)	6						GGGGTGATTTCGAGGATTCCA	0.453													16	35					0	0	0.004990	0	0
WAC	51322	broad.mit.edu	37	10	28897159	28897159	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:28897159C>T	uc001iuf.2	+	8	1049	c.964C>T	c.(964-966)CCT>TCT	p.P322S	WAC_uc001iud.2_Missense_Mutation_p.P277S|WAC_uc001iue.2_Intron|WAC_uc009xlb.2_Missense_Mutation_p.P277S|WAC_uc001iug.2_Missense_Mutation_p.P219S|WAC_uc001iuh.2_Missense_Mutation_p.P277S	NM_016628	NP_057712	Q9BTA9	WAC_HUMAN	WW domain-containing adapter with a coiled-coil	322					cell cycle checkpoint|histone H2B conserved C-terminal lysine ubiquitination|histone monoubiquitination|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nuclear speck	chromatin binding|RNA polymerase II core binding			large_intestine(1)|ovary(1)	2						TTGCACAACTCCTTCCACGTC	0.448													44	56					0	0	0.003610	0	0
NRP1	8829	broad.mit.edu	37	10	33502610	33502610	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:33502610C>T	uc001iwx.3	-	9	1841	c.1318G>A	c.(1318-1320)GGA>AGA	p.G440R	NRP1_uc001iwv.3_Missense_Mutation_p.G440R|NRP1_uc009xlz.2_Missense_Mutation_p.G440R|NRP1_uc001iww.3_Missense_Mutation_p.G259R|NRP1_uc001iwy.3_Missense_Mutation_p.G440R|NRP1_uc001iwz.2_Missense_Mutation_p.G440R|NRP1_uc001ixa.2_Missense_Mutation_p.G440R|NRP1_uc001ixb.1_Missense_Mutation_p.G440R|NRP1_uc001ixc.1_Missense_Mutation_p.G440R	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	440	Extracellular (Potential).|F5/8 type C 2.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	GAAATAAGTCCAGACACCATA	0.458													32	50					0	0	0.003271	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37507968	37507968	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:37507968G>A	uc001iza.1	+	34	3259	c.3160G>A	c.(3160-3162)GAA>AAA	p.E1054K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1110	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GTTGAAAAAGGAAATTGCCAT	0.289													22	19					0	0	0.010504	0	0
ZNF33B	7582	broad.mit.edu	37	10	43089079	43089079	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:43089079G>A	uc001jaf.1	-	5	1434	c.1319C>T	c.(1318-1320)CCC>CTC	p.P440L	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Missense_Mutation_p.P328L|ZNF33B_uc001jad.2_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	440						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACATTCATAGGGTTTCTGCCC	0.408													40	28					0	0	0.006999	0	0
BMS1	9790	broad.mit.edu	37	10	43312841	43312841	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:43312841G>A	uc001jaj.2	+	15	2837	c.2479G>A	c.(2479-2481)GAT>AAT	p.D827N		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	827					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						AAAGCATTTGGATAAGAAGAG	0.328													11	23					0	0	0.001855	0	0
RET	5979	broad.mit.edu	37	10	43596097	43596097	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:43596097C>T	uc001jal.2	+	2	454	c.264C>T	c.(262-264)ATC>ATT	p.I88I	RET_uc001jak.1_Silent_p.I88I	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	88	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	GGATCTGCATCCAGGAGGACA	0.647		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				6	6					0	0	0.001168	0	0
RET	5979	broad.mit.edu	37	10	43615600	43615600	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:43615600C>T	uc001jal.2	+	15	2869	c.2679C>T	c.(2677-2679)TTC>TTT	p.F893F	RET_uc001jak.1_Silent_p.F893F|RET_uc010qez.1_Silent_p.F639F	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	893	Protein kinase.|Cytoplasmic (Potential).		F -> L (in HSCR1; sporadic form).		homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	TTTCGGATTTCGGCTTGTCCC	0.567		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				10	15					0	0	0.001368	0	0
C10orf10	11067	broad.mit.edu	37	10	45473304	45473304	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:45473304C>T	uc001jbr.3	-	2	465	c.175G>A	c.(175-177)GCC>ACC	p.A59T	RASSF4_uc001jbo.2_Intron|RASSF4_uc001jbp.2_Intron|RASSF4_uc009xmn.2_Intron|RASSF4_uc001jbq.2_Intron	NM_007021	NP_008952	Q9NTK1	DEPP_HUMAN	fasting-induced protein	59						mitochondrion					0						TGGCCCTGGGCCGTGGCCTTG	0.667													12	20					0	0	0.001368	0	0
ANUBL1	93550	broad.mit.edu	37	10	46159002	46159002	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:46159002G>A	uc001jcp.3	-	2	414	c.172C>T	c.(172-174)CGA>TGA	p.R58*	ANUBL1_uc001jcm.3_Nonsense_Mutation_p.R58*|ANUBL1_uc009xmu.2_5'UTR|ANUBL1_uc001jcn.3_5'UTR|ANUBL1_uc001jco.3_Nonsense_Mutation_p.R58*|ANUBL1_uc001jcq.2_RNA|ANUBL1_uc001jcr.2_Nonsense_Mutation_p.R58*	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	58	Ubiquitin-like.						zinc ion binding				0						TCCAATCTTCGAATTTTTGCT	0.308													9	18					0	0	0.008291	0	0
FRMPD2	143162	broad.mit.edu	37	10	49400782	49400782	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:49400782C>T	uc001jgi.2	-	16	2217	c.2110G>A	c.(2110-2112)GAT>AAT	p.D704N	FRMPD2_uc001jgh.2_Missense_Mutation_p.D672N|FRMPD2_uc001jgj.2_Missense_Mutation_p.D682N	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	704					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TTGAAGTTATCCATTGATGTA	0.522													25	26					0	0	0.004656	0	0
LRRC18	474354	broad.mit.edu	37	10	50121985	50121985	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:50121985G>A	uc001jhd.2	-	1	296	c.216C>T	c.(214-216)TTC>TTT	p.F72F	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.F72F	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	72	LRR 2.					cytoplasm				ovary(1)|pancreas(1)	2						GGAGGTTCTGGAACTTGGAGA	0.532													23	24					0	0	0.003330	0	0
C10orf71	118461	broad.mit.edu	37	10	50531107	50531107	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:50531107C>T	uc010qgp.1	+	3	856	c.517C>T	c.(517-519)CCT>TCT	p.P173S		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	173											0						TCTGAAAAATCCTCCCAAATT	0.502													18	23					0	0	0.004990	0	0
DRGX	644168	broad.mit.edu	37	10	50594888	50594888	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:50594888C>T	uc010qgq.1	-	4	266	c.266G>A	c.(265-267)AGA>AAA	p.R89K		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	89					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TTTGGCCCTTCTGTTCTGGAA	0.547													93	97					0	0	0.003610	0	0
OGDHL	55753	broad.mit.edu	37	10	50947747	50947747	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:50947747T>A	uc001jie.2	-	17	2421	c.2279A>T	c.(2278-2280)AAT>ATT	p.N760I	OGDHL_uc009xog.2_Missense_Mutation_p.N787I|OGDHL_uc010qgt.1_Missense_Mutation_p.N703I|OGDHL_uc010qgu.1_Missense_Mutation_p.N551I	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	760					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CACAATGCCATTATGCCGCAC	0.642													17	27					0	0	0.010504	0	0
ASAH2	56624	broad.mit.edu	37	10	52005019	52005019	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:52005019C>T	uc001jjd.2	-	2	323	c.323G>A	c.(322-324)CGA>CAA	p.R108Q	ASAH2_uc009xos.2_Missense_Mutation_p.R108Q	NM_019893	NP_063946	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase 2 isoform a	108	Lumenal (Potential).				apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						GCAGTCAGCTCGTCCAACACC	0.448													117	133					0	0	0.003610	0	0
PCDH15	65217	broad.mit.edu	37	10	55569229	55569229	+	Silent	SNP	G	A	A	rs12359240		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:55569229G>A	uc010qhs.1	-	37	4991	c.4596C>T	c.(4594-4596)ATC>ATT	p.I1532I	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Silent_p.I1525I|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTGGTTTTTCGATAGTTACAA	0.368										HNSCC(58;0.16)			91	126					0	0	0.003610	0	0
UBE2D1	7321	broad.mit.edu	37	10	60124590	60124590	+	Silent	SNP	C	T	T	rs144227480	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:60124590C>T	uc001jke.1	+	5	481	c.258C>T	c.(256-258)CTC>CTT	p.L86L		NM_003338	NP_003329	P51668	UB2D1_HUMAN	ubiquitin-conjugating enzyme E2D 1	86					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|BMP signaling pathway|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K48-linked ubiquitination|transforming growth factor beta receptor signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|ubiquitin-protein ligase activity			skin(2)	2						GTATTTGTCTCGATATTCTGA	0.323													28	34					0	0	0.009535	0	0
CCDC6	8030	broad.mit.edu	37	10	61552677	61552677	+	Nonstop_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:61552677A>G	uc001jks.3	-	9	2059	c.1423T>C	c.(1423-1425)TAA>CAA	p.*475Q		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	475						cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		CTCATGCATTAAGGCTGGGAG	0.562													45	73					0	0	0.003610	0	0
ANK3	288	broad.mit.edu	37	10	61831521	61831521	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:61831521C>T	uc001jky.2	-	37	9310	c.9118G>A	c.(9118-9120)GAA>AAA	p.E3040K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3040					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTTTCGGTTTCCTCGAGAGGT	0.423													44	54					0	0	0.003610	0	0
ANK3	288	broad.mit.edu	37	10	61973199	61973199	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:61973199G>A	uc001jky.2	-	9	1159	c.967C>T	c.(967-969)CGA>TGA	p.R323*	ANK3_uc010qih.1_Nonsense_Mutation_p.R306*|ANK3_uc001jkz.3_Nonsense_Mutation_p.R317*|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	323	ANK 8.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGGGCAGCTCGATCAAGCAAC	0.418													29	24					0	0	0.003755	0	0
ANK3	288	broad.mit.edu	37	10	62021678	62021678	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:62021678C>T	uc001jky.2	-	7	929	c.737G>A	c.(736-738)GGA>GAA	p.G246E	ANK3_uc010qih.1_Missense_Mutation_p.G229E|ANK3_uc001jkz.3_Missense_Mutation_p.G240E|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	246	ANK 6.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ATTGATATTTCCATAGTGAGC	0.468													22	26					0	0	0.003954	0	0
TMEM26	219623	broad.mit.edu	37	10	63188716	63188716	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:63188716G>A	uc001jlo.2	-	4	942	c.573C>T	c.(571-573)TTC>TTT	p.F191F	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlq.2_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	191	Helical; (Potential).					integral to membrane					0	Prostate(12;0.0112)					TCTCACTTGTGAATTCCAGTA	0.463													21	31					0	0	0.004656	0	0
ARID5B	84159	broad.mit.edu	37	10	63852113	63852113	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:63852113G>T	uc001jlt.1	+	10	2917	c.2891G>T	c.(2890-2892)GGC>GTC	p.G964V		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	964					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					ACCATGTCAGGCCCTAAAAAA	0.522													52	41					1.32667e-27	2.11527e-27	0.003610	1	0
ARID5B	84159	broad.mit.edu	37	10	63852711	63852711	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:63852711C>T	uc001jlt.1	+	10	3515	c.3489C>T	c.(3487-3489)TAC>TAT	p.Y1163Y		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	1163					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					ACAGCATTTACCCTTTAGCTG	0.488													43	55					0	0	0.007835	0	0
JMJD1C	221037	broad.mit.edu	37	10	64973570	64973570	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:64973570G>A	uc001jmn.2	-	8	2657	c.2357C>T	c.(2356-2358)CCA>CTA	p.P786L	JMJD1C_uc001jml.2_Missense_Mutation_p.P567L|JMJD1C_uc001jmm.2_Missense_Mutation_p.P498L|JMJD1C_uc010qiq.1_Missense_Mutation_p.P604L|JMJD1C_uc009xpi.2_Missense_Mutation_p.P604L|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmp.1_Missense_Mutation_p.P498L	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	786					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					AGCATGGTGTGGACCACTAGT	0.498													16	10					0	0	0.004007	0	0
DNA2	1763	broad.mit.edu	37	10	70182479	70182479	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:70182479G>A	uc001jof.2	-	15	2635	c.2635C>T	c.(2635-2637)CCC>TCC	p.P879S	DNA2_uc001jog.1_Intron|DNA2_uc001joh.1_RNA	NM_001080449	NP_001073918	P51530	DNA2L_HUMAN	DNA replication helicase 2 homolog	793					base-excision repair|DNA replication, removal of RNA primer|mitochondrial DNA repair|mitochondrial DNA replication|positive regulation of DNA replication|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	mitochondrial nucleoid|nucleoplasm	5'-flap endonuclease activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|site-specific endodeoxyribonuclease activity, specific for altered base				0						AGCACCAGGGGAGGAAGCTGC	0.413													13	21					0	0	0.001855	0	0
HKDC1	80201	broad.mit.edu	37	10	71010086	71010086	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:71010086C>T	uc001jpf.3	+	11	1744	c.1611C>T	c.(1609-1611)AAC>AAT	p.N537N	HKDC1_uc010qje.1_Silent_p.N400N	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	537	ATP (Potential).				glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						GGGGAACCAACTTCCGGGTCC	0.547													62	92					0	0	0.003610	0	0
TACR2	6865	broad.mit.edu	37	10	71174875	71174875	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:71174875G>A	uc001jpn.2	-	2	1008	c.413C>T	c.(412-414)CCC>CTC	p.P138L		NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	138	Cytoplasmic (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	AGGCTGGAAGGGGTGGACGAT	0.637													17	23					0	0	0.008871	0	0
KIAA1274	27143	broad.mit.edu	37	10	72289707	72289707	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:72289707C>T	uc001jrd.3	+	4	632	c.351C>T	c.(349-351)AGC>AGT	p.S117S		NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	117										ovary(2)|central_nervous_system(1)	3						CCGTGGGAAGCTGTGGGGCCC	0.642													17	17					0	0	0.004007	0	0
KIAA1274	27143	broad.mit.edu	37	10	72324221	72324221	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:72324221C>T	uc001jrd.3	+	19	2645	c.2364C>T	c.(2362-2364)CTC>CTT	p.L788L	KIAA1274_uc001jre.3_Silent_p.L79L	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	788										ovary(2)|central_nervous_system(1)	3						ACGCGTACCTCCACCTGGAGA	0.642													43	55					0	0	0.003610	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72468448	72468448	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:72468448G>A	uc001jrh.2	+	4	784	c.784G>A	c.(784-786)GAG>AAG	p.E262K	ADAMTS14_uc001jrg.2_Missense_Mutation_p.E262K	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	262	Peptidase M12B.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CTACAGCATCGAGGTGCTGCT	0.612													42	51					0	0	0.003610	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72498703	72498703	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:72498703G>A	uc001jrh.2	+	11	1705	c.1705G>A	c.(1705-1707)GGG>AGG	p.G569R	ADAMTS14_uc001jrg.2_Missense_Mutation_p.G572R|ADAMTS14_uc001jri.1_Missense_Mutation_p.G92R	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	569	TSP type-1 1.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						GCGGTCATGTGGGGGCGGGGT	0.647													16	17					0	0	0.004990	0	0
UNC5B	219699	broad.mit.edu	37	10	73055576	73055576	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:73055576G>A	uc001jro.2	+	14	2629	c.2184G>A	c.(2182-2184)CTG>CTA	p.L728L	UNC5B_uc001jrp.2_Silent_p.L717L	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	728	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						AGGAGGTGCTGGAGCTGGAGC	0.642													15	6					0	0	0.003163	0	0
CDH23	64072	broad.mit.edu	37	10	73437276	73437276	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:73437276C>T	uc001jrx.3	+	15	1955	c.1578C>T	c.(1576-1578)ATC>ATT	p.I526I	CDH23_uc001jry.2_Silent_p.I142I|CDH23_uc001jrz.2_Silent_p.I142I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	526	Cadherin 5.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ATGAGCTCATCCAGCGCTTCA	0.602													4	11					0	0	0.000602	0	0
KCNMA1	3778	broad.mit.edu	37	10	78846346	78846346	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:78846346G>T	uc001jxn.2	-	11	1517	c.1340C>A	c.(1339-1341)TCC>TAC	p.S447Y	KCNMA1_uc001jxj.2_Missense_Mutation_p.S447Y|KCNMA1_uc001jxk.1_Missense_Mutation_p.S62Y|KCNMA1_uc009xrt.1_Missense_Mutation_p.S267Y|KCNMA1_uc001jxl.1_Missense_Mutation_p.S101Y|KCNMA1_uc001jxo.2_Missense_Mutation_p.S447Y|KCNMA1_uc001jxm.2_Missense_Mutation_p.S447Y|KCNMA1_uc001jxq.2_Missense_Mutation_p.S447Y	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	447	RCK N-terminal.|Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CAGGTTGGGGGAGATGCTACA	0.478													15	22					1.37285e-15	2.17978e-15	0.004007	1	0
KCNMA1	3778	broad.mit.edu	37	10	78850189	78850189	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:78850189C>T	uc001jxn.2	-	10	1480	c.1303G>A	c.(1303-1305)GAC>AAC	p.D435N	KCNMA1_uc001jxj.2_Missense_Mutation_p.D435N|KCNMA1_uc001jxk.1_Missense_Mutation_p.D50N|KCNMA1_uc009xrt.1_Missense_Mutation_p.D255N|KCNMA1_uc001jxl.1_Missense_Mutation_p.D89N|KCNMA1_uc001jxo.2_Missense_Mutation_p.D435N|KCNMA1_uc001jxm.2_Missense_Mutation_p.D435N|KCNMA1_uc001jxq.2_Missense_Mutation_p.D435N	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	435	RCK N-terminal.|Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	ACATTGACGTCATCCCGGTCC	0.522													40	34					0	0	0.009718	0	0
MBL1P	8512	broad.mit.edu	37	10	81667602	81667602	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:81667602G>A	uc001kbf.2	+	3		c.540G>A								Homo sapiens mannose-binding protein-A pseudogene (MBL1P1) mRNA sequence.												0						GCCCTGTGATGATCGTGTCAG	0.483													23	20					0	0	0.002780	0	0
SFTPD	6441	broad.mit.edu	37	10	81701771	81701771	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:81701771G>A	uc001kbh.2	-	5	532	c.489C>T	c.(487-489)GGC>GGT	p.G163G	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	163	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			CTCCCTTAGGGCCTGCGAGGC	0.617													28	42					0	0	0.005443	0	0
DYDC2	84332	broad.mit.edu	37	10	82122713	82122713	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:82122713G>A	uc001kca.1	+	4	534	c.154G>A	c.(154-156)GAA>AAA	p.E52K	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Missense_Mutation_p.E52K	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	52							protein binding				0			Colorectal(32;0.229)			CCAGAATAGGGAAAAGAAGAT	0.493													62	90					0	0	0.003610	0	0
NRG3	10718	broad.mit.edu	37	10	84118499	84118499	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:84118499G>A	uc001kco.2	+	2	855	c.828G>A	c.(826-828)ACG>ACA	p.T276T	NRG3_uc010qlz.1_Silent_p.T276T|NRG3_uc001kcp.2_Silent_p.T55T|NRG3_uc001kcq.2_5'UTR	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	276	Ser/Thr-rich.|Extracellular (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity	p.T276R(1)		lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		TGACAGATACGACGACATATT	0.517													41	35					0	0	0.003214	0	0
CDHR1	92211	broad.mit.edu	37	10	85968030	85968030	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:85968030G>A	uc001kcv.2	+	11	1064	c.1064G>A	c.(1063-1065)GGA>GAA	p.G355E	CDHR1_uc001kcw.2_Missense_Mutation_p.G355E|CDHR1_uc009xst.2_Missense_Mutation_p.G114E	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	355	Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						ACATTCTATGGAGAGAGCGGA	0.592													17	22					0	0	0.007413	0	0
OPN4	94233	broad.mit.edu	37	10	88417789	88417789	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:88417789G>A	uc001kdq.2	+	3	518	c.291G>A	c.(289-291)AGG>AGA	p.R97R	OPN4_uc001kdp.2_Silent_p.Q108Q|OPN4_uc010qmk.1_Silent_p.Q108Q|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	97	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						ATCCTCCCAGGAGCAGAAGCC	0.572													25	23					0	0	0.003330	0	0
LDB3	11155	broad.mit.edu	37	10	88476342	88476342	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:88476342C>T	uc001kdv.2	+	9	1513	c.1490C>T	c.(1489-1491)TCC>TTC	p.S497F	LDB3_uc010qml.1_Missense_Mutation_p.S434F|LDB3_uc010qmm.1_Missense_Mutation_p.S502F|LDB3_uc001kdu.2_Missense_Mutation_p.S387F|LDB3_uc009xsz.2_Missense_Mutation_p.S126F|LDB3_uc009xta.1_5'Flank	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	497						cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						GATAGCTTCTCCCAGAAGTTT	0.622													36	57					0	0	0.006999	0	0
ATAD1	84896	broad.mit.edu	37	10	89550090	89550090	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:89550090G>A	uc001key.1	-	3	642	c.359C>T	c.(358-360)TCC>TTC	p.S120F	ATAD1_uc010qmr.1_Missense_Mutation_p.S62F|ATAD1_uc009xth.1_RNA|ATAD1_uc001kez.1_Missense_Mutation_p.S120F	NM_032810	NP_116199	Q8NBU5	ATAD1_HUMAN	ATPase family, AAA domain containing 1	120						peroxisome	ATP binding|nucleoside-triphosphatase activity			large_intestine(1)|ovary(1)	2		all_cancers(4;6.78e-12)|Prostate(4;3.56e-12)|all_epithelial(4;5.58e-09)|Melanoma(5;0.0273)|Breast(4;0.0424)|all_hematologic(4;0.0846)|Colorectal(252;0.207)|Glioma(4;0.217)|all_neural(4;0.224)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00131)|GBM - Glioblastoma multiforme(1;1.1e-32)|Lung(2;1.4e-05)|LUSC - Lung squamous cell carcinoma(2;2.69e-05)|Colorectal(12;7.09e-05)|COAD - Colon adenocarcinoma(12;0.000261)|STAD - Stomach adenocarcinoma(243;0.235)		CAGAAGCCTGGAATTCTCAAA	0.368													24	33					0	0	0.004656	0	0
LIPK	643414	broad.mit.edu	37	10	90497538	90497538	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:90497538G>A	uc010qmv.1	+	6	816	c.816G>A	c.(814-816)ATG>ATA	p.M272I		NM_001080518	NP_001073987	Q5VXJ0	LIPK_HUMAN	lipase, family member K precursor	272					lipid catabolic process	extracellular region	hydrolase activity			ovary(2)	2		Colorectal(252;0.0381)		Colorectal(12;7.03e-05)|COAD - Colon adenocarcinoma(12;8.33e-05)		ACTTAAATATGGTAGGTGTAA	0.388													53	74					0	0	0.003610	0	0
ANKRD22	118932	broad.mit.edu	37	10	90591670	90591670	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:90591670G>A	uc001kfj.3	-	2	503	c.135C>T	c.(133-135)ATC>ATT	p.I45I		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	45	ANK 1.										0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		TGCAAGCACAGATCAGGGGCG	0.473													113	128					0	0	0.003610	0	0
PLCE1	51196	broad.mit.edu	37	10	95791437	95791437	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:95791437G>A	uc001kjk.2	+	2	1268	c.634G>A	c.(634-636)GAT>AAT	p.D212N	PLCE1_uc010qnx.1_Missense_Mutation_p.D212N	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	212					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AATTTTAGACGATTGTGGAAA	0.388													22	33					0	0	0.002299	0	0
PLCE1	51196	broad.mit.edu	37	10	95987188	95987188	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:95987188G>A	uc001kjk.2	+	5	2569	c.1935G>A	c.(1933-1935)ATG>ATA	p.M645I	PLCE1_uc010qnx.1_Missense_Mutation_p.M645I|PLCE1_uc001kjm.2_Missense_Mutation_p.M337I	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	645	Ras-GEF.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ACGCTGTCATGGAGTTCTTGG	0.493													77	99					0	0	0.003610	0	0
PLCE1	51196	broad.mit.edu	37	10	96064324	96064324	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:96064324G>A	uc001kjk.2	+	25	6178	c.5544G>A	c.(5542-5544)AAG>AAA	p.K1848K	PLCE1_uc010qnx.1_Silent_p.K1832K|PLCE1_uc001kjm.2_Silent_p.K1540K|PLCE1_uc001kjp.2_Silent_p.K206K	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1848					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				TGTGGGACAAGAACTGCCCCA	0.413													51	72					0	0	0.003610	0	0
CYP2C9	1559	broad.mit.edu	37	10	96701699	96701699	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:96701699G>A	uc001kka.3	+	2	278	c.253G>A	c.(253-255)GAA>AAA	p.E85K	CYP2C9_uc009xut.2_Missense_Mutation_p.E85K|CYP2C9_uc001kjz.2_Missense_Mutation_p.E85K	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	85					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	AGCAGTGAAGGAAGCCCTGAT	0.473													82	92					0	0	0.003610	0	0
CCNJ	54619	broad.mit.edu	37	10	97816608	97816608	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:97816608T>C	uc001klm.2	+	4	790	c.431T>C	c.(430-432)CTT>CCT	p.L144P	uc001klg.1_Intron|uc001klj.1_Intron|uc009xvb.1_Intron|CCNJ_uc010qoq.1_Missense_Mutation_p.L144P|CCNJ_uc001kln.2_Missense_Mutation_p.L144P	NM_019084	NP_061957	Q5T5M9	CCNJ_HUMAN	cyclin J isoform 2	144						nucleus				ovary(1)	1				Epithelial(162;6.1e-08)|all cancers(201;2.32e-06)		AACCTCTGCCTTCCAACAGCC	0.378													46	43					0	0	0.003610	0	0
SLIT1	6585	broad.mit.edu	37	10	98820540	98820540	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:98820540C>T	uc001kmw.2	-	9	1050	c.798G>A	c.(796-798)CAG>CAA	p.Q266Q	SLIT1_uc009xvh.1_Silent_p.Q266Q	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	266					axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CCGCTTCTCCCTGGCCTGCAG	0.637													9	5					0	0	0.006214	0	0
DHDPSL	112817	broad.mit.edu	37	10	99359866	99359866	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:99359866G>A	uc001kny.2	+	5	1005	c.646G>A	c.(646-648)GAT>AAT	p.D216N	DHDPSL_uc001knx.2_3'UTR|DHDPSL_uc001knz.2_Intron|PI4K2A_uc010qoy.1_Intron	NM_138413	NP_612422	Q86XE5	HOGA1_HUMAN	DHDPS-like protein isoform 1	216					glyoxylate catabolic process	mitochondrion	4-hydroxy-2-oxoglutarate aldolase activity				0						CAGGAAGCAGGATTTTCAGGT	0.547													58	79					0	0	0.003610	0	0
WNT8B	7479	broad.mit.edu	37	10	102238824	102238824	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:102238824C>T	uc001krb.2	+	2	198	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_003393	NP_003384	Q93098	WNT8B_HUMAN	wingless-type MMTV integration site family,	28					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|determination of dorsal identity|endoderm development|eye development|gastrulation|hypothalamus development|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|otic placode formation|positive regulation of gene expression|response to estradiol stimulus|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(1)|breast(1)|large_intestine(1)|skin(1)	4		Colorectal(252;0.117)		Epithelial(162;1.87e-10)|all cancers(201;1.64e-08)		TGAACAATTTCCTGATGACTG	0.333													18	19					0	0	0.010504	0	0
CNNM2	54805	broad.mit.edu	37	10	104816573	104816573	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:104816573C>T	uc001kwm.2	+	4	2049	c.1925C>T	c.(1924-1926)TCC>TTC	p.S642F	CNNM2_uc001kwn.2_Missense_Mutation_p.S642F	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	642					ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		TTTAGCCCATCCCAGATGTCA	0.363													22	25					0	0	0.001882	0	0
C10orf79	80217	broad.mit.edu	37	10	105926332	105926332	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:105926332C>T	uc001kxw.2	-	23	3069	c.2953G>A	c.(2953-2955)GAT>AAT	p.D985N	C10orf79_uc009xxq.2_Missense_Mutation_p.D293N	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	985											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		ACCCCAAAATCAGTACTCAGA	0.373													35	28					0	0	0.003755	0	0
SORCS3	22986	broad.mit.edu	37	10	106918692	106918693	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:106918692_106918693CC>TT	uc001kyi.1	+	11	1899_1900	c.1672_1673CC>TT	c.(1672-1674)CCA>TTA	p.P558L		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	558	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CTCTGAAAATCCATATTCCTCA	0.45													26	39					0	0	0.004672	0	0
ACSL5	51703	broad.mit.edu	37	10	114177625	114177625	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:114177625C>T	uc001kzs.2	+	14	1381	c.1240C>T	c.(1240-1242)CGT>TGT	p.R414C	ACSL5_uc001kzt.2_Missense_Mutation_p.R414C|ACSL5_uc001kzu.2_Missense_Mutation_p.R470C|ACSL5_uc009xxz.2_Missense_Mutation_p.R414C|ACSL5_uc010qrj.1_Missense_Mutation_p.R196C	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	414	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		CGGAAGGGTTCGTGTAATTGT	0.383													51	64					0	0	0.003610	0	0
PNLIP	5406	broad.mit.edu	37	10	118306806	118306806	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:118306806G>A	uc001lcm.2	+	3	90	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	16					lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	GGGATTGCAGGAAAAGAAGTT	0.418													24	28					0	0	0.004656	0	0
PNLIP	5406	broad.mit.edu	37	10	118320013	118320013	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:118320013C>T	uc001lcm.2	+	11	1189	c.1146C>T	c.(1144-1146)AAC>AAT	p.N382N		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	382	PLAT.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	ATAAAGGAAACTCTAAGCAGT	0.269													9	19					0	0	0.006214	0	0
PNLIPRP2	5408	broad.mit.edu	37	10	118389458	118389458	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:118389458G>A	uc001lcq.2	+	9	608	c.585G>A	c.(583-585)CTG>CTA	p.L195L	PNLIPRP2_uc009xyu.1_RNA|PNLIPRP2_uc009xyv.1_RNA	NM_005396	NP_005387	P54317	LIPR2_HUMAN	pancreatic lipase-related protein 2	194					galactolipid catabolic process|lipid digestion|phospholipid catabolic process|triglyceride metabolic process	extracellular space	acylglycerol lipase activity|calcium ion binding|galactolipase activity|phospholipase activity|triglyceride lipase activity			large_intestine(1)	1				all cancers(201;0.015)		TTTCAGGGCTGGATCCAGCAG	0.532													6	4					0	0	0.001168	0	0
KCNK18	338567	broad.mit.edu	37	10	118969431	118969431	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:118969431G>A	uc010qsr.1	+	3	776	c.776G>A	c.(775-777)GGA>GAA	p.G259E		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	259	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		CTGGTGTTGGGAAGACTCTCA	0.517													37	33					0	0	0.005524	0	0
SFXN4	119559	broad.mit.edu	37	10	120917536	120917536	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:120917536G>A	uc001leb.2	-	7	444	c.399C>T	c.(397-399)TCC>TCT	p.S133S	SFXN4_uc001ldy.2_Silent_p.S17S|SFXN4_uc001ldz.2_Silent_p.S17S|SFXN4_uc001lea.2_RNA	NM_213649	NP_998814	Q6P4A7	SFXN4_HUMAN	sideroflexin 4	133	Helical; (Potential).				iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0261)		GTAAAATCACGGACTTGATCC	0.428													24	40					0	0	0.005443	0	0
C10orf119	79892	broad.mit.edu	37	10	121618633	121618633	+	Missense_Mutation	SNP	G	A	A	rs139316442		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:121618633G>A	uc001ler.2	-	3	503	c.205C>T	c.(205-207)CGT>TGT	p.R69C	C10orf119_uc001les.1_5'UTR	NM_024834	NP_079110	Q9BTE3	MCMBP_HUMAN	chromosome 10 open reading frame 119	69					cell division|DNA-dependent DNA replication|mitosis|S phase of mitotic cell cycle|sister chromatid cohesion	nucleus	chromatin binding				0		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.0044)		ATCATGCAACGAAATTTCACA	0.343													26	27					0	0	0.003330	0	0
WDR11	55717	broad.mit.edu	37	10	122665480	122665480	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:122665480C>T	uc010qtf.1	+	27	3622	c.3384C>T	c.(3382-3384)CTC>CTT	p.L1128L	WDR11_uc010qte.1_Silent_p.L730L|WDR11_uc001lfd.1_Silent_p.L646L|WDR11_uc009xzn.2_Silent_p.L419L|uc001lfe.1_5'Flank	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	1128	Helical; (Potential).					integral to membrane					0						CAAAGGCTCTCCTGGTTCTCC	0.522													41	38					0	0	0.003610	0	0
TACC2	10579	broad.mit.edu	37	10	123842253	123842254	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:123842253_123842254CC>TT	uc001lfv.2	+	4	598_599	c.238_239CC>TT	c.(238-240)CCA>TTA	p.P80L	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P80L|TACC2_uc010qtv.1_Missense_Mutation_p.P80L	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	80						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GGTGACTGAGCCAAGGAAGGAC	0.609													34	42					0	0	0.004672	0	0
TACC2	10579	broad.mit.edu	37	10	123844737	123844737	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:123844737G>A	uc001lfv.2	+	4	3082	c.2722G>A	c.(2722-2724)GGC>AGC	p.G908S	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.G908S|TACC2_uc010qtv.1_Missense_Mutation_p.G908S	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	908						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GCTCCCCAAAGGCACCCTGTC	0.488													17	31					0	0	0.004007	0	0
CHST15	51363	broad.mit.edu	37	10	125805533	125805533	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:125805533C>T	uc001lhl.2	-	1	709	c.196G>A	c.(196-198)GAA>AAA	p.E66K	CHST15_uc001lhm.2_Missense_Mutation_p.E66K|CHST15_uc001lhn.2_Missense_Mutation_p.E66K|CHST15_uc010que.1_Missense_Mutation_p.E66K|CHST15_uc001lho.2_Missense_Mutation_p.E66K	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	66	Cytoplasmic (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						CCCCAGTTTTCGTTCCCTTCA	0.463													25	34					0	0	0.004656	0	0
PTPRE	5791	broad.mit.edu	37	10	129866536	129866536	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:129866536C>T	uc001lkb.2	+	12	1272	c.993C>T	c.(991-993)ATC>ATT	p.I331I	PTPRE_uc009yat.2_Silent_p.I342I|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Silent_p.I331I|PTPRE_uc001lkd.2_Silent_p.I273I|PTPRE_uc010quq.1_Silent_p.I232I	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	331	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				CTGGGCCCATCGTGGTCCACT	0.612													20	23					0	0	0.002299	0	0
PTPRE	5791	broad.mit.edu	37	10	129875896	129875896	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:129875896G>A	uc001lkb.2	+	19	2020	c.1741G>A	c.(1741-1743)GAG>AAG	p.E581K	PTPRE_uc009yat.2_Missense_Mutation_p.E592K|PTPRE_uc009yau.2_Missense_Mutation_p.E581K|PTPRE_uc001lkd.2_Missense_Mutation_p.E523K|PTPRE_uc010quq.1_Missense_Mutation_p.E482K	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	581	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				GGCCCGCCAGGAGGAGCAGGT	0.667													10	11					0	0	0.001855	0	0
PWWP2B	170394	broad.mit.edu	37	10	134218812	134218812	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr10:134218812C>T	uc001lll.3	+	2	837	c.808C>T	c.(808-810)CCC>TCC	p.P270S	PWWP2B_uc009ybe.2_Missense_Mutation_p.P270S	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	270											0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		GGTCAAGATCCCCTCCCGCGT	0.706													5	9					0	0	0.001984	0	0
IFITM2	10581	broad.mit.edu	37	11	308250	308250	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:308250G>A	uc001lox.3	+	1	144	c.58G>A	c.(58-60)GAG>AAG	p.E20K		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	20	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		TCCCAACTACGAGATGCTCAA	0.597													58	69					0	0	0.003610	0	0
ANO9	338440	broad.mit.edu	37	11	429596	429596	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:429596C>T	uc001lpi.2	-	11	974	c.889G>A	c.(889-891)GAC>AAC	p.D297N	ANO9_uc001lph.2_5'UTR|ANO9_uc010qvv.1_Missense_Mutation_p.D153N	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	297	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						ACGTACAGGTCCCAGTGCAGG	0.701													10	12					0	0	0.006214	0	0
CDHR5	53841	broad.mit.edu	37	11	618892	618892	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:618892C>T	uc001lqj.2	-	13	1772	c.1667G>A	c.(1666-1668)GGA>GAA	p.G556E	IRF7_uc001lqh.2_5'Flank|IRF7_uc001lqi.2_5'Flank|IRF7_uc010qwh.1_5'Flank|CDHR5_uc001lqk.2_Intron|CDHR5_uc009ycc.2_Missense_Mutation_p.G390E|CDHR5_uc009ycd.2_Missense_Mutation_p.G550E|CDHR5_uc001lql.2_Missense_Mutation_p.G556E	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	556	4 X 31 AA approximate tandem repeats.|1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GGTGCTGGTTCCCACACCGGG	0.652													41	43					0	0	0.003214	0	0
MUC2	4583	broad.mit.edu	37	11	1087502	1087502	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:1087502G>A	uc001lsx.1	+	24	3280	c.3253G>A	c.(3253-3255)GGT>AGT	p.G1085S		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1085						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CTGTGACACGGGTGGGGACTG	0.662													16	16					0	0	0.004990	0	0
MUC5B	727897	broad.mit.edu	37	11	1270696	1270696	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:1270696G>A	uc009ycr.1	+	51	14131	c.14005G>A	c.(14005-14007)GAC>AAC	p.D4669N	MUC5B_uc001ltb.2_Missense_Mutation_p.D4199N	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4196	7 X Cys-rich subdomain repeats.|Thr-rich.|Cys-rich subdomain 7.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ATGCAGCCTGGACTTTGGCCT	0.632													44	50					0	0	0.003610	0	0
ART1	417	broad.mit.edu	37	11	3680495	3680495	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:3680495G>A	uc001lye.1	+	2	153	c.52G>A	c.(52-54)GAA>AAA	p.E18K	ART1_uc009yeb.1_Missense_Mutation_p.E18K	NM_004314	NP_004305	P52961	NAR1_HUMAN	ADP-ribosyltransferase 1 precursor	18					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane|sarcoplasmic reticulum membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity				0		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0351)|LUSC - Lung squamous cell carcinoma(625;0.195)	Becaplermin(DB00102)	GGGCCTCATGGAAGCACTTCA	0.413													33	32					0	0	0.006999	0	0
NUP98	4928	broad.mit.edu	37	11	3781853	3781853	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:3781853G>A	uc001lyh.2	-	10	1381	c.1090C>T	c.(1090-1092)CTG>TTG	p.L364L	NUP98_uc001lyi.2_Silent_p.L364L|NUP98_uc001lyj.1_Silent_p.L364L|NUP98_uc001lyk.1_Silent_p.L364L	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	364	Gly/Thr-rich.				carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		TTGCCAAACAGGGTCTAAAAA	0.403			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								26	50					0	0	0.007291	0	0
TRIM21	6737	broad.mit.edu	37	11	4406957	4406957	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:4406957G>A	uc001lyy.1	-	7	1099	c.986C>T	c.(985-987)CCT>CTT	p.P329L		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	329	B30.2/SPRY.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		CAGGACCATAGGATAACTATC	0.507													5	4					0	0	0.001168	0	0
OR52M1	119772	broad.mit.edu	37	11	4566853	4566853	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:4566853C>T	uc010qyf.1	+	1	433	c.433C>T	c.(433-435)CGT>TGT	p.R145C		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGTGGTGGGTCGTTTGGGGCT	0.522													19	31					0	0	0.008871	0	0
OR52I2	143502	broad.mit.edu	37	11	4608812	4608812	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:4608812G>A	uc010qyh.1	+	1	770	c.770G>A	c.(769-771)GGT>GAT	p.G257D		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	257	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCAGTATTTGGTCTCTCCTCA	0.473													32	67					0	0	0.003610	0	0
OR51D1	390038	broad.mit.edu	37	11	4661092	4661092	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:4661092C>T	uc010qyk.1	+	1	72	c.72C>T	c.(70-72)TTC>TTT	p.F24F		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGCATACTTCCTTTTGGTGG	0.502													49	60					0	0	0.003610	0	0
OR52R1	119695	broad.mit.edu	37	11	4824732	4824732	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:4824732G>A	uc010qym.1	-	1	1116	c.1116C>T	c.(1114-1116)ATC>ATT	p.I372I		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	293	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTCCATAAATGATGGGGTTGA	0.473													49	71					0	0	0.003610	0	0
OR51F2	119694	broad.mit.edu	37	11	4843076	4843076	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:4843076G>A	uc010qyn.1	+	1	461	c.461G>A	c.(460-462)CGA>CAA	p.R154Q		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCAATGCCCGAATTGCCAAG	0.463													83	110					0	0	0.003610	0	0
OR51G1	79324	broad.mit.edu	37	11	4944777	4944777	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:4944777G>A	uc010qyr.1	-	1	793	c.793C>T	c.(793-795)CGC>TGC	p.R265C		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCACCAAAGCGATGCACAAGA	0.517													34	46					0	0	0.003271	0	0
OR52J3	119679	broad.mit.edu	37	11	5068617	5068617	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:5068617C>T	uc010qyv.1	+	1	862	c.862C>T	c.(862-864)CTC>TTC	p.L288F		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCCACCCTCTCTCAACCCCAT	0.388													35	35					0	0	0.003755	0	0
OR52A4	390053	broad.mit.edu	37	11	5142614	5142614	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:5142614G>A	uc001lzz.1	-	1	195	c.195C>T	c.(193-195)ATC>ATT	p.I65I	OR52A4_uc001maa.2_RNA	NM_001005222	NP_001005222			olfactory receptor, family 52, subfamily A,											ovary(2)	2		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.7e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TGGCCAGGAAGATATACATGG	0.418													23	28					0	0	0.003330	0	0
OR51B6	390058	broad.mit.edu	37	11	5372815	5372815	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:5372815C>T	uc010qzb.1	+	1	78	c.78C>T	c.(76-78)TTC>TTT	p.F26F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTGGATATTCATCCCATTAT	0.468													31	21					0	0	0.002445	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443766	5443766	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:5443766G>A	uc010qzd.1	+	1	336	c.336G>A	c.(334-336)ATG>ATA	p.M112I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTCCTTTATGGAGTCTTCTG	0.488													61	72					0	0	0.003610	0	0
OR51I2	390064	broad.mit.edu	37	11	5475583	5475583	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:5475583C>T	uc010qzf.1	+	1	865	c.865C>T	c.(865-867)CCT>TCT	p.P289S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTGCTCAACCCTCTCATTTA	0.463													68	80					0	0	0.003610	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5626672	5626672	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:5626672G>A	uc001mbf.2	+	4	953	c.709G>A	c.(709-711)GAG>AAG	p.E237K	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Missense_Mutation_p.E183K|TRIM6_uc010qzj.1_Missense_Mutation_p.E34K|TRIM6_uc001mbc.1_Missense_Mutation_p.E209K|TRIM6_uc001mbe.2_Missense_Mutation_p.E34K|TRIM6_uc010qzk.1_Missense_Mutation_p.E34K|TRIM6_uc010qzl.1_Missense_Mutation_p.E34K|TRIM6_uc001mbd.2_Missense_Mutation_p.E237K|TRIM6_uc001mbg.1_Missense_Mutation_p.E34K|TRIM6_uc009yep.1_Missense_Mutation_p.E34K	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	237						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		GGAACAGGAAGAGAAGAAGGG	0.512											OREG0003723	type=REGULATORY REGION|Gene=TRIM6|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	29	42					0	0	0.007291	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5664584	5664584	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:5664584C>T	uc001mbf.2	+	14	2418	c.2174C>T	c.(2173-2175)TCC>TTC	p.S725F	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Missense_Mutation_p.S371F|TRIM34_uc009yeq.2_Missense_Mutation_p.S126F|TRIM34_uc001mbi.2_Missense_Mutation_p.S371F|TRIM78P_uc009yer.2_Intron	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	725						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		AGAACATATTCCCGCCATATG	0.423													23	23					0	0	0.001882	0	0
OR52N4	390072	broad.mit.edu	37	11	5776411	5776411	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:5776411G>A	uc001mbu.2	+	1	489	c.441G>A	c.(439-441)GGG>GGA	p.G147G	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		CAAAGGTTGGGACTGCCACCT	0.493													51	54					0	0	0.003610	0	0
OR52E6	390078	broad.mit.edu	37	11	5862509	5862509	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:5862509G>A	uc010qzq.1	-	1	619	c.619C>T	c.(619-621)CTC>TTC	p.L207F	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AATAACAAGAGAGAAATACTG	0.473													21	36					0	0	0.008871	0	0
CNGA4	1262	broad.mit.edu	37	11	6261362	6261362	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:6261362G>A	uc001mco.2	+	4	445	c.338G>A	c.(337-339)TGG>TAG	p.W113*	CNGA4_uc010raa.1_Intron|CNGA4_uc001mcn.2_Nonsense_Mutation_p.W73*	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	113	Helical; Name=H3; (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTTCGCACCTGGAGTTTCTTC	0.617													51	75					0	0	0.003610	0	0
APBB1	322	broad.mit.edu	37	11	6424402	6424402	+	Silent	SNP	G	A	A	rs146910788		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:6424402G>A	uc001mdb.1	-	6	1177	c.1077C>T	c.(1075-1077)CCC>CCT	p.P359P	APBB1_uc001mcz.1_5'Flank|APBB1_uc001mdd.3_Silent_p.P139P|APBB1_uc001mda.2_Intron|APBB1_uc001mdc.1_Silent_p.P359P|APBB1_uc010rab.1_5'Flank|APBB1_uc010rac.1_5'Flank|APBB1_uc010rad.1_5'Flank|APBB1_uc010rae.1_Silent_p.P124P|APBB1_uc010raf.1_Silent_p.P100P|APBB1_uc009yfa.2_Silent_p.P100P|APBB1_uc009yey.2_Silent_p.P100P|APBB1_uc010rag.1_Silent_p.P100P|APBB1_uc009yfb.2_Silent_p.P100P|APBB1_uc001mde.2_Silent_p.P100P|APBB1_uc010rah.1_Silent_p.P100P	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	359					apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding			breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		TATTCCGTGGGGGAAGCTTCT	0.547													34	52					0	0	0.004289	0	0
NLRP14	338323	broad.mit.edu	37	11	7091629	7091629	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:7091629G>C	uc001mfb.1	+	11	3411	c.3088G>C	c.(3088-3090)GGA>CGA	p.G1030R		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	1030	LRR 11.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		AGGATATGAAGGAATTGTGAA	0.383													18	35					0	0	0.004990	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111474	7111474	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:7111474G>A	uc001mfc.2	+	1	1310	c.1123G>A	c.(1123-1125)GGC>AGC	p.G375S		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	375	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GGTGCCCAGGGGCGGAGGCCG	0.607													4	4					0	0	0.000602	0	0
OR5P2	120065	broad.mit.edu	37	11	7818403	7818403	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:7818403G>A	uc001mfp.1	-	1	87	c.87C>T	c.(85-87)ATC>ATT	p.I29I		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCATGAAGAGGATGACTCGAA	0.433													10	10					0	0	0.008291	0	0
OR5P3	120066	broad.mit.edu	37	11	7847181	7847181	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:7847181G>A	uc010rbg.1	-	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CAGCCAGCAGGAAGCACTCGG	0.547													42	54					0	0	0.003214	0	0
IPO7	10527	broad.mit.edu	37	11	9446716	9446716	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:9446716T>C	uc001mho.2	+	12	1384	c.1242T>C	c.(1240-1242)TTT>TTC	p.F414F		NM_006391	NP_006382	O95373	IPO7_HUMAN	importin 7	414					interspecies interaction between organisms|signal transduction	Golgi apparatus|nuclear pore|soluble fraction	protein transporter activity|Ran GTPase binding|small GTPase regulator activity			lung(1)|breast(1)	2				all cancers(16;8.29e-09)|Epithelial(150;4.76e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0217)		CTATGGGATTTTGTTACCAGA	0.358													38	56					0	0	0.007835	0	0
DKK3	27122	broad.mit.edu	37	11	11987475	11987475	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:11987475C>T	uc001mju.2	-	6	768	c.711G>A	c.(709-711)GAG>GAA	p.E237E	DKK3_uc010rcf.1_Silent_p.E209E|DKK3_uc001mjv.2_Silent_p.E237E|DKK3_uc001mjw.2_Silent_p.E237E|DKK3_uc010rcg.1_Silent_p.E237E	NM_001018057	NP_001018067	Q9UBP4	DKK3_HUMAN	dickkopf homolog 3 precursor	237	DKK-type Cys-2.				adrenal gland development|anatomical structure morphogenesis|negative regulation of aldosterone biosynthetic process|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cortisol biosynthetic process|negative regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	extracellular space				breast(1)	1				Epithelial(150;0.000502)		AAAGCTCGCCCTCCACGGGCA	0.652													11	13					0	0	0.000978	0	0
SPON1	10418	broad.mit.edu	37	11	14284316	14284316	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:14284316G>A	uc001mle.2	+	16	2593	c.2055G>A	c.(2053-2055)GGG>GGA	p.G685G		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	685	TSP type-1 5.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		AGTCATGTGGGAAAGGCCACG	0.532													16	11					0	0	0.003163	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16812573	16812573	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:16812573C>T	uc001mmo.2	-	20	2934	c.2919G>A	c.(2917-2919)GTG>GTA	p.V973V	PLEKHA7_uc010rcu.1_Silent_p.V974V|PLEKHA7_uc001mmm.2_Silent_p.V76V|PLEKHA7_uc010rcv.1_Silent_p.V548V|PLEKHA7_uc001mmn.2_Silent_p.V682V	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	973					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						AATCCCCATTCACACACTGCC	0.627													12	16					0	0	0.002450	0	0
ABCC8	6833	broad.mit.edu	37	11	17483175	17483175	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:17483175G>A	uc001mnc.2	-	5	903	c.777C>T	c.(775-777)GCC>GCT	p.A259A	ABCC8_uc010rcy.1_Silent_p.A259A	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	259	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	AGTTGGTGAGGGCCCTCATGG	0.587													169	192					0	0	0.003610	0	0
LDHC	3948	broad.mit.edu	37	11	18456337	18456337	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:18456337C>T	uc001mon.3	+	5	581	c.469C>T	c.(469-471)CGT>TGT	p.R157C	LDHC_uc001mom.3_Missense_Mutation_p.R157C|LDHC_uc009yhp.2_Missense_Mutation_p.R157C|LDHC_uc001moo.3_Missense_Mutation_p.R41C|LDHC_uc009yhq.2_RNA|LDHC_uc009yhr.2_Missense_Mutation_p.R41C	NM_017448	NP_059144	P07864	LDHC_HUMAN	L-lactate dehydrogenase C	157					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	ACCTGTAACTCGTGTAATTGG	0.368													63	82					0	0	0.003610	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956018	18956018	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:18956018G>A	uc001mpg.2	-	1	532	c.314C>T	c.(313-315)TCC>TTC	p.S105F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	105	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TGCAAAGTAGGAAAACATCAT	0.547													49	112					0	0	0.003610	0	0
ANO5	203859	broad.mit.edu	37	11	22257816	22257816	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:22257816C>T	uc001mqi.2	+	8	1073	c.756C>T	c.(754-756)CTC>CTT	p.L252L	ANO5_uc001mqj.2_Silent_p.L251L	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	252	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						CCTATCCACTCCATGATGTAT	0.383													16	22					0	0	0.004990	0	0
GAS2	2620	broad.mit.edu	37	11	22747927	22747927	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:22747927G>A	uc009yie.2	+	4	663	c.357G>A	c.(355-357)TGG>TGA	p.W119*	GAS2_uc001mqm.2_Nonsense_Mutation_p.W119*|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Nonsense_Mutation_p.W119*	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	119	CH.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						TCTTATCCTGGTGCCGAGATT	0.393													34	38					0	0	0.004878	0	0
LUZP2	338645	broad.mit.edu	37	11	24759789	24759789	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:24759789G>A	uc001mqs.2	+	4	508	c.274G>A	c.(274-276)GAG>AAG	p.E92K	LUZP2_uc009yif.2_Missense_Mutation_p.E6K|LUZP2_uc009yig.2_Missense_Mutation_p.E92K	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	92	Potential.					extracellular region				ovary(1)|skin(1)	2						GTCTCTTCAGGAGGCCCTGCA	0.368													27	24					0	0	0.002096	0	0
ANO3	63982	broad.mit.edu	37	11	26620405	26620405	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:26620405G>A	uc001mqt.3	+	16	1676	c.1531G>A	c.(1531-1533)GAA>AAA	p.E511K	ANO3_uc010rdr.1_Missense_Mutation_p.E495K|ANO3_uc010rds.1_Missense_Mutation_p.E350K|ANO3_uc010rdt.1_Missense_Mutation_p.E365K	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	511	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TCTCTCATAGGAAACACTTCG	0.383													12	16					0	0	0.003163	0	0
ANO3	63982	broad.mit.edu	37	11	26664794	26664794	+	Missense_Mutation	SNP	T	G	G	rs11825056		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:26664794T>G	uc001mqt.3	+	23	2486	c.2341T>G	c.(2341-2343)TTA>GTA	p.L781V	ANO3_uc010rdr.1_Missense_Mutation_p.L765V|ANO3_uc010rds.1_Missense_Mutation_p.L620V|ANO3_uc010rdt.1_Missense_Mutation_p.L635V	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	781	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TTTGGCTTTGTTAAACAATAT	0.408													44	45					0	0	0.003610	0	0
FIBIN	387758	broad.mit.edu	37	11	27016437	27016437	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:27016437G>A	uc001mrd.2	+	1	810	c.364G>A	c.(364-366)GAG>AAG	p.E122K		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	122						extracellular region|Golgi apparatus					0						CCTGCGGCGGGAGTCCCACCA	0.612													17	20					0	0	0.010504	0	0
Unknown	0	broad.mit.edu	37	11	31115658	31115658	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:31115658C>T	uc009yjk.1	-	4	470	c.401G>A	c.(400-402)AGC>AAC	p.S134N	uc009yjl.1_Missense_Mutation_p.S62N|DCDC1_uc001msu.1_Missense_Mutation_p.S305N					RecName: Full=Doublecortin domain-containing protein 5;																		TTGACTCCTGCTGCTTGCTTC	0.478													38	44					0	0	0.004878	0	0
WIT1	51352	broad.mit.edu	37	11	32460426	32460426	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:32460426G>A	uc010rec.1	+	2		c.1144G>A			WIT1_uc010red.1_RNA|WIT1_uc010ree.1_RNA	NR_023920				full-length cDNA clone CS0DC024YP12 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0	Breast(20;0.247)					AGAGCTAATGGGATGCAGAGG	0.303													7	16					0	0	0.003080	0	0
PAMR1	25891	broad.mit.edu	37	11	35456238	35456238	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:35456238C>T	uc001mwg.2	-	10	1491	c.1448G>A	c.(1447-1449)GGA>GAA	p.G483E	PAMR1_uc001mwf.2_Missense_Mutation_p.G500E|PAMR1_uc010rew.1_Missense_Mutation_p.G372E|PAMR1_uc010rex.1_Missense_Mutation_p.G443E	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	483	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						GAACCACGCTCCCTTGTGTAG	0.607													32	30					0	0	0.002096	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136969	40136969	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:40136969G>A	uc001mxa.1	-	2	2838	c.874C>T	c.(874-876)CAT>TAT	p.H292Y	LRRC4C_uc001mxc.1_Missense_Mutation_p.H288Y|LRRC4C_uc001mxd.1_Missense_Mutation_p.H288Y|LRRC4C_uc001mxb.1_Missense_Mutation_p.H288Y	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	292					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				CGCTCTAGATGATGCAAGGGA	0.468													55	55					0	0	0.003610	0	0
CHST1	8534	broad.mit.edu	37	11	45672072	45672072	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:45672072G>A	uc001mys.1	-	4	1073	c.402C>T	c.(400-402)TTC>TTT	p.F134F		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	134	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		AGTTCTCCAGGAAGTAGAGGT	0.697													40	47					0	0	0.003214	0	0
MAPK8IP1	9479	broad.mit.edu	37	11	45924119	45924119	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:45924119C>T	uc001nbr.2	+	5	971	c.801C>T	c.(799-801)ATC>ATT	p.I267I		NM_005456	NP_005447	Q9UQF2	JIP1_HUMAN	mitogen-activated protein kinase 8 interacting	267	JNK-binding domain (JBD).				vesicle-mediated transport	nucleus|perinuclear region of cytoplasm	kinesin binding|MAP-kinase scaffold activity|protein kinase inhibitor activity			ovary(2)|breast(1)|skin(1)	4				GBM - Glioblastoma multiforme(35;0.231)		GAGACCGAATCCACTACCAGG	0.687													9	12					0	0	0.006214	0	0
MYBPC3	4607	broad.mit.edu	37	11	47364144	47364144	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:47364144C>T	uc001nfa.3	-	16	1664	c.1609G>A	c.(1609-1611)GAG>AAG	p.E537K	MYBPC3_uc010rhl.1_RNA	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	536	Ig-like C2-type 3.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		ACAATGAGCTCAGCCAGCGCC	0.617													12	5					0	0	0.000978	0	0
AGBL2	79841	broad.mit.edu	37	11	47689234	47689234	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:47689234C>T	uc001ngg.2	-	15	2329	c.2229G>A	c.(2227-2229)AAG>AAA	p.K743K	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Silent_p.K705K	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	743					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						TAAACATCTTCTTTTTCTGAG	0.378													25	33					0	0	0.003954	0	0
NUP160	23279	broad.mit.edu	37	11	47833673	47833673	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:47833673G>A	uc001ngm.2	-	17	2269	c.2184C>T	c.(2182-2184)TTC>TTT	p.F728F	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	728					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						TGCAGATCAGGAAACGAGTAC	0.418													17	20					0	0	0.006122	0	0
LOC440040	440040	broad.mit.edu	37	11	49597902	49597902	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:49597902C>T	uc010rhy.1	+	2	493	c.15C>T	c.(13-15)ATC>ATT	p.I5I	LOC440040_uc009ymb.2_Silent_p.I5I	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						TGGGTGACATCATTATTGGAG	0.498													23	14					0	0	0.002780	0	0
LOC440040	440040	broad.mit.edu	37	11	49598031	49598031	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:49598031G>A	uc010rhy.1	+	2	622	c.144G>A	c.(142-144)AGG>AGA	p.R48R	LOC440040_uc009ymb.2_Silent_p.R48R	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						CCCTGGAAAGGATCAATTCAG	0.537													7	7					0	0	0.001984	0	0
LOC646813	646813	broad.mit.edu	37	11	50379486	50379486	+	RNA	SNP	T	A	A	rs79893782		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:50379486T>A	uc001nhe.2	+	6		c.969T>A			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						tgttttgttttTTTGCCTGTC	0.289													4	4					0	0	0.009096	0	0
OR4A5	81318	broad.mit.edu	37	11	51412363	51412363	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:51412363G>A	uc001nhi.1	-	1	33	c.33C>T	c.(31-33)GTC>GTT	p.V11V		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				AGCCCAGGAGGACAAATTCTG	0.423													9	18					0	0	0.008291	0	0
OR5I1	10798	broad.mit.edu	37	11	55703181	55703181	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:55703181A>G	uc010ris.1	-	1	696	c.696T>C	c.(694-696)TCT>TCC	p.S232S		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCCACTGAAAGAGCGGATCT	0.458													6	7					0	0	0.001168	0	0
OR5I1	10798	broad.mit.edu	37	11	55703736	55703736	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:55703736C>T	uc010ris.1	-	1	141	c.141G>A	c.(139-141)TTG>TTA	p.L47L		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCAACAGCATCAATCCAATGT	0.388													12	14					0	0	0.001855	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735759	55735759	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:55735759C>T	uc010rit.1	-	1	181	c.181G>A	c.(181-183)GAA>AAA	p.E61K		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					TAACAGATTTCCAAAAGGGAA	0.353													33	43					0	0	0.004878	0	0
OR8H1	219469	broad.mit.edu	37	11	56057790	56057790	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:56057790A>T	uc010rje.1	-	1	749	c.749T>A	c.(748-750)TTT>TAT	p.F250Y		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					AGTTCCATAAAAGATGGTGAC	0.363													30	24					0	0	0.006320	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756472	56756472	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:56756472C>T	uc010rjp.1	+	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GTATCCTCTTCATTGTATTCC	0.393													41	66					0	0	0.008740	0	0
OR5B17	219965	broad.mit.edu	37	11	58125899	58125899	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:58125899G>A	uc010rke.1	-	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GAACAGATAGGAAATCAAGGT	0.373													10	22					0	0	0.006214	0	0
OR5B17	219965	broad.mit.edu	37	11	58126218	58126218	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:58126218C>T	uc010rke.1	-	1	325	c.325G>A	c.(325-327)GAA>AAA	p.E109K		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AGGTAATTTTCCACAGTGGCA	0.473													24	20					0	0	0.003330	0	0
GLYATL2	219970	broad.mit.edu	37	11	58602185	58602185	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:58602185C>T	uc001nnd.3	-	6	733	c.602G>A	c.(601-603)GGA>GAA	p.G201E	GLYATL2_uc009ymq.2_Missense_Mutation_p.G201E	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	201						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	CACACCAAATCCTAGAAAATC	0.463													16	23					0	0	0.004007	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722348	58722348	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:58722348A>G	uc001nnf.2	+	6	668	c.292A>G	c.(292-294)AAA>GAA	p.K98E	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.K129E|GLYATL1_uc001nni.1_Missense_Mutation_p.K98E|GLYATL1_uc001nnj.1_Missense_Mutation_p.K98E			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	98						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	CGTAAACTGGAAACAGAGACT	0.299													6	14					0	0	0.003080	0	0
MS4A1	931	broad.mit.edu	37	11	60233401	60233401	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:60233401G>A	uc001npp.2	+	6	760	c.344G>A	c.(343-345)GGA>GAA	p.G115E	MS4A1_uc001npq.2_Missense_Mutation_p.G115E|MS4A1_uc009yna.2_Missense_Mutation_p.G115E|MS4A1_uc009ymz.2_Missense_Mutation_p.G115E|MS4A1_uc010rlc.1_Intron	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member	115					B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	CAGGTCAAAGGAAAAATGATA	0.338													26	33					0	0	0.009535	0	0
TMEM132A	54972	broad.mit.edu	37	11	60702236	60702236	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:60702236G>A	uc001nqj.2	+	9	2029	c.1836G>A	c.(1834-1836)GAG>GAA	p.E612E	TMEM132A_uc001nqi.2_Silent_p.E613E|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	612	Binds to HSPA5/GRP78 (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CCTCCATTGAGGTAAGCAGCT	0.662													14	17					0	0	0.004990	0	0
AHNAK	79026	broad.mit.edu	37	11	62285540	62285541	+	Missense_Mutation	DNP	GG	AA	AA	rs139375615	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:62285540_62285541GG>AA	uc001ntl.2	-	5	16648_16649	c.16348_16349CC>TT	c.(16348-16350)CCG>TTG	p.P5450L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	5450					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GTCCACATTCGGTGCTGAAATC	0.564													33	50					0	0	0.004672	0	0
AHNAK	79026	broad.mit.edu	37	11	62301352	62301352	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:62301352T>A	uc001ntl.2	-	5	837	c.537A>T	c.(535-537)GAA>GAT	p.E179D	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	179					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TGATCTTGAATTCAGGGCTAC	0.542													48	45					0	0	0.003610	0	0
SLC22A24	283238	broad.mit.edu	37	11	62911098	62911098	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:62911098G>T	uc009yop.2	-	1	596	c.154C>A	c.(154-156)CCC>ACC	p.P52T		NM_001136506	NP_001129978			solute carrier family 22, member 24												0						TCCAGGAGGGGGACCCAGCAG	0.502													17	7					2.94398e-08	4.65712e-08	0.007413	1	0
RTN3	10313	broad.mit.edu	37	11	63486256	63486256	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:63486256C>T	uc001nxq.2	+	3	469	c.282C>T	c.(280-282)AAC>AAT	p.N94N	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Silent_p.N75N|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Intron|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	94					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						AAATACATAACACTGGCCTTA	0.383													16	15					0	0	0.004007	0	0
PLCB3	5331	broad.mit.edu	37	11	64026159	64026159	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:64026159C>T	uc001nzb.2	+	11	1227	c.1227C>T	c.(1225-1227)ATC>ATT	p.I409I	PLCB3_uc009ypg.1_Silent_p.I409I|PLCB3_uc009yph.1_Silent_p.I342I|PLCB3_uc009ypi.2_Silent_p.I409I	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	409	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						ACCCCGTCATCCTCTCCTTCG	0.597													26	42					0	0	0.009535	0	0
SF1	7536	broad.mit.edu	37	11	64534462	64534462	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:64534462G>A	uc001obb.1	-	12	1869	c.1492C>T	c.(1492-1494)CCC>TCC	p.P498S	SF1_uc010rnm.1_Missense_Mutation_p.P190S|SF1_uc010rnn.1_Missense_Mutation_p.P472S|SF1_uc001oaz.1_Missense_Mutation_p.P623S|SF1_uc001oba.1_Missense_Mutation_p.P498S|SF1_uc001obc.1_Missense_Mutation_p.P498S|SF1_uc001obd.1_Missense_Mutation_p.S499F|SF1_uc001obe.1_Missense_Mutation_p.S384F|SF1_uc010rno.1_Missense_Mutation_p.P383S	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	498	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						TGCCATGGGGGAAGAGGACCA	0.662													37	26					0	0	0.004878	0	0
FRMD8	83786	broad.mit.edu	37	11	65172502	65172502	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:65172502G>A	uc001odu.3	+	10	1431	c.1239G>A	c.(1237-1239)CGG>CGA	p.R413R	FRMD8_uc009yqj.2_Silent_p.R357R|FRMD8_uc010rof.1_Silent_p.R379R	NM_031904	NP_114110	Q9BZ67	FRMD8_HUMAN	FERM domain containing 8	413						cytoskeleton	binding			lung(1)|pancreas(1)	2						TGTCCAGCCGGATCCAGCATC	0.652													22	31					0	0	0.005443	0	0
MALAT1	378938	broad.mit.edu	37	11	65268805	65268805	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:65268805C>T	uc010roh.1	+	1		c.3573C>T			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						ACAAGAAAATCCAATATCAGG	0.413													12	18					0	0	0.001855	0	0
MALAT1	378938	broad.mit.edu	37	11	65273927	65273927	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:65273927G>A	uc010roh.1	+	1		c.8695G>A				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TAATAAAAATGGAGAAGCTCT	0.363													7	12					0	0	0.006214	0	0
SIPA1	6494	broad.mit.edu	37	11	65408595	65408595	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:65408595C>T	uc001ofb.2	+	2	370	c.203C>T	c.(202-204)CCC>CTC	p.P68L	SIPA1_uc010rom.1_Missense_Mutation_p.P68L|SIPA1_uc001ofd.2_Missense_Mutation_p.P68L	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	68					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						CCAGCCAGCCCCCGTGCCCGT	0.731													14	12					0	0	0.002450	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65714972	65714972	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:65714972G>A	uc001ogk.1	+	5	708	c.676G>A	c.(676-678)GAG>AAG	p.E226K	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	226											0						TGAGGAGGCCGAGAGGGGTCT	0.657													17	23					0	0	0.010504	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793332	65793332	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:65793332G>A	uc001ogt.2	-	1	657	c.519C>T	c.(517-519)TCC>TCT	p.S173S		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	173	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CACCATGGTGGGAAGCCTCAC	0.577													26	19					0	0	0.009535	0	0
TMEM151A	256472	broad.mit.edu	37	11	66063101	66063101	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:66063101G>A	uc001ohl.2	+	2	1496	c.1384G>A	c.(1384-1386)GGG>AGG	p.G462R		NM_153266	NP_694998	Q8N4L1	T151A_HUMAN	transmembrane protein 151A	462						integral to membrane				central_nervous_system(1)	1						CGGCTGCCAGGGGGATGGGCA	0.662													3	2					0	0	0.004672	0	0
NPAS4	266743	broad.mit.edu	37	11	66190155	66190155	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:66190155C>T	uc001ohx.1	+	4	617	c.441C>T	c.(439-441)TTC>TTT	p.F147F	NPAS4_uc010rpc.1_5'UTR	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	147					transcription, DNA-dependent		DNA binding|signal transducer activity				0						ATCGCCTCTTCCGCTGCCGCT	0.547													22	25					0	0	0.002780	0	0
NPAS4	266743	broad.mit.edu	37	11	66192549	66192549	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:66192549G>A	uc001ohx.1	+	7	2364	c.2188G>A	c.(2188-2190)GAT>AAT	p.D730N	NPAS4_uc010rpc.1_Missense_Mutation_p.D520N	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	730					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GGGCTCAGGGGATCCTGAGGC	0.592													21	23					0	0	0.002299	0	0
SSH3	54961	broad.mit.edu	37	11	67079175	67079175	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:67079175C>T	uc001okj.2	+	14	1975	c.1797C>T	c.(1795-1797)TCC>TCT	p.S599S	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_Silent_p.S453S	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	599					regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			CCCTGAAGTCCCGCCAGTCAG	0.532													27	16					0	0	0.006320	0	0
TMEM134	80194	broad.mit.edu	37	11	67235031	67235031	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:67235031G>A	uc001olq.1	-	3	338	c.270C>T	c.(268-270)TCC>TCT	p.S90S	TMEM134_uc001olp.1_Silent_p.S81S|TMEM134_uc001olr.1_Silent_p.S90S|TMEM134_uc001ols.1_RNA|TMEM134_uc001olt.1_RNA|TMEM134_uc010rpt.1_Silent_p.S81S|TMEM134_uc009yrx.2_Silent_p.S90S|TMEM134_uc010rpu.1_Missense_Mutation_p.P85L|TMEM134_uc001olu.3_Missense_Mutation_p.P94L	NM_025124	NP_079400	Q9H6X4	TM134_HUMAN	transmembrane protein 134 isoform a	90	Cytoplasmic (Potential).					integral to membrane					0						AGGACCACTGGGAGCTGCGGA	0.657													29	30					0	0	0.009535	0	0
MYEOV	26579	broad.mit.edu	37	11	69063750	69063750	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:69063750G>A	uc001oov.2	+	3	1283	c.833G>A	c.(832-834)AGG>AAG	p.R278K	MYEOV_uc001oox.2_Intron|MYEOV_uc009ysl.2_Missense_Mutation_p.R278K|MYEOV_uc001oow.2_Missense_Mutation_p.R220K	NM_138768	NP_620123	Q96EZ4	MYEOV_HUMAN	myeloma overexpressed	278											0	all_lung(4;2.21e-19)|Lung NSC(4;6.13e-19)|Melanoma(5;0.00128)		LUSC - Lung squamous cell carcinoma(11;3.33e-11)|STAD - Stomach adenocarcinoma(18;0.00654)|LUAD - Lung adenocarcinoma(13;0.0713)	Kidney(183;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(183;3.23e-08)|Lung(977;0.00361)|LUSC - Lung squamous cell carcinoma(976;0.0153)		GGAGTTAGGAGGACTGGCCAG	0.498													3	6					0	0	0.004672	0	0
FGF3	2248	broad.mit.edu	37	11	69625228	69625228	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:69625228C>T	uc001oph.2	-	3	1056	c.565G>A	c.(565-567)GAG>AAG	p.E189K		NM_005247	NP_005238	P11487	FGF3_HUMAN	fibroblast growth factor 3 precursor	189					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of cardiac muscle tissue development|positive regulation of cell division|positive regulation of cell proliferation	extracellular region	growth factor activity			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(11;5.05e-15)|STAD - Stomach adenocarcinoma(18;0.0278)			CGCACCATCTCGTGGTCCCTG	0.692													8	3					0	0	0.006214	0	0
INPPL1	3636	broad.mit.edu	37	11	71944134	71944134	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:71944134C>T	uc001osf.2	+	17	2114	c.1967C>T	c.(1966-1968)TCC>TTC	p.S656F	INPPL1_uc001osg.2_Missense_Mutation_p.S414F	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	656					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						GAGGAGATCTCCTTCCCACCC	0.587													10	9					0	0	0.000978	0	0
CLPB	81570	broad.mit.edu	37	11	72012885	72012885	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:72012885G>A	uc001osj.2	-	12	1431	c.1381C>T	c.(1381-1383)CCA>TCA	p.P461S	CLPB_uc010rqx.1_Missense_Mutation_p.P416S|CLPB_uc010rqy.1_Missense_Mutation_p.P402S|CLPB_uc001osk.2_Missense_Mutation_p.P431S|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Missense_Mutation_p.P260S|CLPB_uc001osi.2_Missense_Mutation_p.P69S	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	461					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						AGCACATCTGGATGGGCCTTG	0.562													206	234					0	0	0.003610	0	0
GDPD5	81544	broad.mit.edu	37	11	75152259	75152259	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:75152259G>A	uc001owo.3	-	15	1959	c.1422C>T	c.(1420-1422)ACC>ACT	p.T474T	GDPD5_uc001owp.3_Silent_p.T474T|GDPD5_uc001own.3_Silent_p.T229T|GDPD5_uc009yuc.2_Silent_p.T336T|GDPD5_uc009yud.2_Silent_p.T355T	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	474	Extracellular (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						AGTTGTCAGAGGTGACGGATG	0.642													7	19					0	0	0.001984	0	0
GDPD5	81544	broad.mit.edu	37	11	75153561	75153561	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:75153561G>A	uc001owo.3	-	13	1551	c.1014C>T	c.(1012-1014)TCC>TCT	p.S338S	GDPD5_uc001owp.3_Silent_p.S338S|GDPD5_uc001own.3_Silent_p.S93S|GDPD5_uc009yuc.2_Silent_p.S200S|GDPD5_uc009yud.2_Silent_p.S219S	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	338	Extracellular (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						GGCTGCAGATGGACTGGTTCT	0.642													12	19					0	0	0.002450	0	0
PRKRIR	5612	broad.mit.edu	37	11	76062171	76062171	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:76062171G>A	uc001oxh.1	-	5	2023	c.2023C>T	c.(2023-2025)CCT>TCT	p.P675S	PRKRIR_uc010rrz.1_Missense_Mutation_p.P500S	NM_004705	NP_004696	O43422	P52K_HUMAN	protein-kinase, interferon-inducible double	675					negative regulation of cell proliferation|response to stress|signal transduction		DNA binding|metal ion binding|protein dimerization activity			ovary(2)|pancreas(1)	3						TACACATTAGGAAAAAACTTG	0.428													38	51					0	0	0.006999	0	0
KCTD14	65987	broad.mit.edu	37	11	77728220	77728220	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:77728220A>G	uc001oyw.3	-	2	212	c.187T>C	c.(187-189)TTC>CTC	p.F63L		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	63	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			AAGCTAGAGAACATCTCTGCC	0.597													25	20					0	0	0.006320	0	0
ODZ4	26011	broad.mit.edu	37	11	78380168	78380168	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:78380168C>T	uc001ozl.3	-	32	7685	c.7222G>A	c.(7222-7224)GAT>AAT	p.D2408N	ODZ4_uc001ozk.3_Missense_Mutation_p.D633N|ODZ4_uc009yvb.1_Missense_Mutation_p.D992N	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2408	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTGAGTGGATCATAGAGGCCA	0.517													8	12					0	0	0.003080	0	0
DLG2	1740	broad.mit.edu	37	11	84996306	84996306	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:84996306G>A	uc001pak.2	-	4	456	c.144C>T	c.(142-144)TCC>TCT	p.S48S		NM_001142699	NP_001136171	Q15700	DLG2_HUMAN	chapsyn-110 isoform 1	Error:Variant_position_missing_in_Q15700_after_alignment						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				GAGCAAGAAGGGATGTCTTCT	0.373													61	3					0	0	0.003610	0	0
HEPHL1	341208	broad.mit.edu	37	11	93754684	93754684	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:93754684G>A	uc001pep.2	+	1	307	c.150G>A	c.(148-150)GGG>GGA	p.G50G		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	50	Plastocyanin-like 1.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TTATTACTGGGAAAAGTTTCA	0.453													48	3					0	0	0.003610	0	0
PANX1	24145	broad.mit.edu	37	11	93912790	93912790	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:93912790C>T	uc001per.2	+	4	953	c.568C>T	c.(568-570)CAC>TAC	p.H190Y	PANX1_uc001peq.2_Missense_Mutation_p.H190Y	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	190	Cytoplasmic (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				ATCTGAAAGCCACTTCAAGTA	0.353													10	1					0	0	0.008291	0	0
PGR	5241	broad.mit.edu	37	11	100933403	100933403	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:100933403G>A	uc001pgh.2	-	4	2730	c.1987C>T	c.(1987-1989)CCA>TCA	p.P663S	PGR_uc001pgg.2_Missense_Mutation_p.P44S|PGR_uc001pgi.2_Intron|PGR_uc009yww.1_Intron|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	663					cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	CTTTCATTTGGAACGCCCACT	0.428													38	4					0	0	0.006999	0	0
TRPC6	7225	broad.mit.edu	37	11	101375405	101375405	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:101375405C>T	uc001pgk.3	-	2	720	c.295G>A	c.(295-297)GAG>AAG	p.E99K	TRPC6_uc009ywy.2_Missense_Mutation_p.E99K|TRPC6_uc009ywz.1_Missense_Mutation_p.E99K	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	99	Cytoplasmic (Potential).|ANK 1.				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		AAGCGTTCCTCCTCTATAGAT	0.478													67	3					0	0	0.003610	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103086451	103086451	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:103086451C>T	uc001pho.2	+	55	8840	c.8696C>T	c.(8695-8697)GCT>GTT	p.A2899V	DYNC2H1_uc001phn.1_Missense_Mutation_p.A2899V|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2899	Potential.|Stalk (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TTGATGTAGGCTGGTGTATCT	0.328													8	0					0	0	0.008291	0	0
GRIA4	2893	broad.mit.edu	37	11	105804641	105804641	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:105804641G>A	uc001pix.2	+	14	2686	c.2240G>A	c.(2239-2241)GGA>GAA	p.G747E	GRIA4_uc001piw.2_Missense_Mutation_p.G747E|GRIA4_uc010rvm.1_RNA|GRIA4_uc009yxl.1_RNA	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	747	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	AAAGTGGGAGGAAATCTGGAT	0.438													15	5					0	0	0.004007	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106810605	106810605	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:106810605G>A	uc001pjg.1	-	4	1177	c.787C>T	c.(787-789)CGG>TGG	p.R263W	GUCY1A2_uc010rvo.1_Missense_Mutation_p.R263W|GUCY1A2_uc009yxn.1_Missense_Mutation_p.R263W	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	263					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		ACATCCAGCCGATAGATCTTC	0.463													36	7					0	0	0.005524	0	0
ALKBH8	91801	broad.mit.edu	37	11	107431577	107431577	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:107431577C>T	uc010rvr.1	-	2	118	c.43G>A	c.(43-45)GAG>AAG	p.E15K	ALKBH8_uc009yxp.2_Missense_Mutation_p.E15K|ALKBH8_uc001pjl.2_RNA	NM_138775	NP_620130	Q96BT7	ALKB8_HUMAN	alkB, alkylation repair homolog 8	15					response to DNA damage stimulus	cytosol|nucleus	metal ion binding|nucleotide binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|protein binding|RNA binding|tRNA (uracil) methyltransferase activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00512)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.53e-05)|Epithelial(105;0.00029)|all cancers(92;0.00518)		AACTTCTTCTCAGTTTTACTG	0.373													19	1					0	0	0.007413	0	0
EXPH5	23086	broad.mit.edu	37	11	108382077	108382077	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:108382077C>T	uc001pkk.2	-	6	4268	c.4157G>A	c.(4156-4158)GGC>GAC	p.G1386D	EXPH5_uc010rvy.1_Missense_Mutation_p.G1198D|EXPH5_uc010rvz.1_Missense_Mutation_p.G1230D|EXPH5_uc010rwa.1_Missense_Mutation_p.G1310D	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1386					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CAACTTTTTGCCTCTTTCCTT	0.343													21	3					0	0	0.002780	0	0
ZC3H12C	85463	broad.mit.edu	37	11	110035405	110035405	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:110035405C>T	uc009yxw.2	+	6	1646	c.1595C>T	c.(1594-1596)CCC>CTC	p.P532L	ZC3H12C_uc010rwc.1_Missense_Mutation_p.P533L|ZC3H12C_uc010rwd.1_Missense_Mutation_p.P533L|ZC3H12C_uc001pkr.3_Missense_Mutation_p.P501L	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	532							endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		ACTGCAAAACCCCAAAGCACT	0.443													35	4					0	0	0.003271	0	0
RDX	5962	broad.mit.edu	37	11	110134900	110134900	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:110134900G>A	uc001pku.2	-	5	562	c.252C>T	c.(250-252)TTC>TTT	p.F84F	RDX_uc009yxx.1_RNA|RDX_uc009yxy.2_Silent_p.F84F|RDX_uc009yxz.2_Intron|RDX_uc009yya.2_Silent_p.F52F|RDX_uc010rwe.1_Intron	NM_002906	NP_002897	P35241	RADI_HUMAN	radixin	84	FERM.				actin filament capping	cleavage furrow|cytoskeleton|extrinsic to membrane|Golgi apparatus|nucleolus|plasma membrane	actin binding				0		all_cancers(61;7.18e-13)|all_epithelial(67;2.61e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.13e-06)|BRCA - Breast invasive adenocarcinoma(274;9.75e-06)|all cancers(92;5.9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0248)		CTTCAGGAAAGAATTTAGCTC	0.313													24	1					0	0	0.002780	0	0
APOA4	337	broad.mit.edu	37	11	116692365	116692365	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:116692365G>A	uc001pps.1	-	3	513	c.409C>T	c.(409-411)CCC>TCC	p.P137S		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		TCCGCGTagggctccaggcgc	0.343													70	9					0	0	0.003610	0	0
MLL	4297	broad.mit.edu	37	11	118344107	118344107	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:118344107C>T	uc001pta.2	+	3	2256	c.2233C>T	c.(2233-2235)CGA>TGA	p.R745*	MLL_uc001ptb.2_Nonsense_Mutation_p.R745*|MLL_uc001psz.1_Nonsense_Mutation_p.R778*|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	745					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		TAGTCCTATTCGATCTGAACC	0.438			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								43	3					0	0	0.003214	0	0
SORL1	6653	broad.mit.edu	37	11	121384872	121384872	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:121384872C>T	uc001pxx.2	+	8	1133	c.1053C>T	c.(1051-1053)ATC>ATT	p.I351I		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	351	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AATATTACATCGCAGATGCCT	0.438													25	3					0	0	0.008361	0	0
OR6T1	219874	broad.mit.edu	37	11	123814495	123814495	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:123814495G>A	uc010sab.1	-	1	51	c.51C>T	c.(49-51)TTC>TTT	p.F17F		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GGCTACTGGGGAAACCCAGAA	0.473													42	7					0	0	0.002852	0	0
OR8G2	26492	broad.mit.edu	37	11	124096207	124096207	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:124096207C>T	uc010saf.1	+	1	810	c.810C>T	c.(808-810)TTC>TTT	p.F270F		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	270						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		CTGCAGCATTCATGTACCTGC	0.517													19	3					0	0	0.003330	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130343277	130343277	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:130343277G>A	uc010scd.1	+	8	2414	c.2414G>A	c.(2413-2415)CGG>CAG	p.R805Q		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	805	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		AAAGAGCCTCGGGAGGACAAG	0.652													72	8					0	0	0.003610	0	0
SLC6A12	6539	broad.mit.edu	37	12	301744	301744	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:301744C>T	uc001qhz.2	-	16	2144	c.1601G>A	c.(1600-1602)TGG>TAG	p.W534*	SLC6A12_uc001qhx.2_Nonsense_Mutation_p.W191*|SLC6A12_uc001qhy.2_Nonsense_Mutation_p.W90*|SLC6A12_uc001qia.2_Nonsense_Mutation_p.W534*|SLC6A12_uc001qib.2_Nonsense_Mutation_p.W534*|SLC6A12_uc009zdh.1_Nonsense_Mutation_p.W534*	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	534					cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			GGAGTATCCCCAGGGCGGGTA	0.562													39	35					0	0	0.006999	0	0
SLC6A12	6539	broad.mit.edu	37	12	309836	309836	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:309836C>T	uc001qhz.2	-	8	1235	c.692G>A	c.(691-693)GGG>GAG	p.G231E	SLC6A12_uc001qhx.2_5'Flank|SLC6A12_uc001qhy.2_5'Flank|SLC6A12_uc001qia.2_Missense_Mutation_p.G231E|SLC6A12_uc001qib.2_Missense_Mutation_p.G231E|SLC6A12_uc009zdh.1_Missense_Mutation_p.G231E|SLC6A12_uc009zdi.1_RNA	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	231					cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			GGACTTGACCCCCTTCCAGAT	0.627													43	61					0	0	0.002852	0	0
CACNA1C	775	broad.mit.edu	37	12	2224556	2224556	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:2224556C>T	uc009zdu.1	+	2	529	c.216C>T	c.(214-216)ACC>ACT	p.T72T	CACNA1C_uc009zdv.1_Silent_p.T72T|CACNA1C_uc001qkb.2_Silent_p.T72T|CACNA1C_uc001qkc.2_Silent_p.T72T|CACNA1C_uc001qke.2_Silent_p.T72T|CACNA1C_uc001qkf.2_Silent_p.T72T|CACNA1C_uc001qjz.2_Silent_p.T72T|CACNA1C_uc001qkd.2_Silent_p.T72T|CACNA1C_uc001qkg.2_Silent_p.T72T|CACNA1C_uc009zdw.1_Silent_p.T72T|CACNA1C_uc001qkh.2_Silent_p.T72T|CACNA1C_uc001qkl.2_Silent_p.T72T|CACNA1C_uc001qkn.2_Silent_p.T72T|CACNA1C_uc001qko.2_Silent_p.T72T|CACNA1C_uc001qkp.2_Silent_p.T72T|CACNA1C_uc001qkr.2_Silent_p.T72T|CACNA1C_uc001qku.2_Silent_p.T72T|CACNA1C_uc001qkq.2_Silent_p.T72T|CACNA1C_uc001qks.2_Silent_p.T72T|CACNA1C_uc001qkt.2_Silent_p.T72T	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	72	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GCAATGCGACCATCTCCACAG	0.687													6	2					0	0	0.001168	0	0
ACSM4	341392	broad.mit.edu	37	12	7469768	7469768	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:7469768G>A	uc001qsx.1	+	4	656	c.656G>A	c.(655-657)GGA>GAA	p.G219E		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	219					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GTGGAAACAGGAAGTCAAGAA	0.502													8	14					0	0	0.004482	0	0
ACSM4	341392	broad.mit.edu	37	12	7475888	7475888	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:7475888G>A	uc001qsx.1	+	8	1184	c.1184G>A	c.(1183-1185)GGA>GAA	p.G395E		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	395					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						ATGGGGAAAGGAATGCTGCCC	0.383													8	13					0	0	0.004482	0	0
CD163	9332	broad.mit.edu	37	12	7632467	7632467	+	Nonstop_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:7632467A>T	uc001qsz.3	-	16	3597	c.3469T>A	c.(3469-3471)TAA>AAA	p.*1157K	CD163_uc001qta.3_3'UTR|CD163_uc009zfw.2_3'UTR	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1157					acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TCACTGGGTTATAAATTCCCA	0.388													20	29					0	0	0.002299	0	0
CD163	9332	broad.mit.edu	37	12	7635594	7635594	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:7635594G>A	uc001qsz.3	-	13	3223	c.3095C>T	c.(3094-3096)TCA>TTA	p.S1032L	CD163_uc001qta.3_Missense_Mutation_p.S1032L|CD163_uc009zfw.2_Missense_Mutation_p.S1065L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1032	Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TTTCTGCACTGAAATATCTGT	0.358													40	56					0	0	0.003214	0	0
DPPA3	359787	broad.mit.edu	37	12	7869615	7869615	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:7869615G>A	uc001qtf.2	+	4	500	c.422G>A	c.(421-423)TGG>TAG	p.W141*		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	141						cytoplasm|nucleus					0				Kidney(36;0.0887)		TCTAATGGATGGGATCCTTCT	0.368													87	97					0	0	0.003610	0	0
CLEC4D	338339	broad.mit.edu	37	12	8671720	8671720	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:8671720G>A	uc001qun.2	+	4	541	c.348G>A	c.(346-348)GGG>GGA	p.G116G		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D	116	C-type lectin.|Extracellular (Potential).				innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)					CAGGGATGGGGGCCCATCTGA	0.488													17	18					0	0	0.006122	0	0
PZP	5858	broad.mit.edu	37	12	9322148	9322148	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:9322148G>A	uc001qvl.2	-	16	1908	c.1879C>T	c.(1879-1881)CCT>TCT	p.P627S	PZP_uc009zgl.2_Missense_Mutation_p.P496S|PZP_uc010sgo.1_5'Flank|PZP_uc009zgm.1_5'UTR	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						ACATTGTCAGGAAAATTGGTG	0.418													13	30					0	0	0.001368	0	0
PRR4	11272	broad.mit.edu	37	12	10999761	10999761	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:10999761G>A	uc001qyz.3	-	3	345	c.306C>T	c.(304-306)CTC>CTT	p.L102L	PRR4_uc009zhp.2_Silent_p.L115L|PRH1_uc001qzb.3_RNA|PRR4_uc001qza.3_Intron	NM_007244	NP_009175	Q16378	PROL4_HUMAN	proline rich 4 (lacrimal) isoform 2	102					visual perception	extracellular space					0						GGGGTAGAGAGAGTTGACGGT	0.552													51	62					0	0	0.003610	0	0
PRB3	5544	broad.mit.edu	37	12	11420906	11420906	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:11420906G>A	uc001qzs.2	-	3	315	c.277C>T	c.(277-279)CCA>TCA	p.P93S	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	93	2.|10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|Pro-rich.					extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			GGACGAGGTGGGGGACCTTGG	0.632													111	135					0	0	0.003610	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18435229	18435229	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:18435229G>A	uc001rdt.2	+	2	330	c.214G>A	c.(214-216)GAC>AAC	p.D72N	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.D72N|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	72					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ACCAAAATGGGACTCAACAGG	0.413													48	59					0	0	0.003610	0	0
PLCZ1	89869	broad.mit.edu	37	12	18889170	18889170	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:18889170C>T	uc010sid.1	-	3	311	c.120G>A	c.(118-120)GTG>GTA	p.V40V	PLCZ1_uc001rdv.3_5'UTR|PLCZ1_uc001rdw.3_5'UTR|CAPZA3_uc001rdy.2_5'Flank	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	40	EF-hand.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					AAATCTGTTTCACATGAATAT	0.358													32	28					0	0	0.009535	0	0
GYS2	2998	broad.mit.edu	37	12	21693416	21693416	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:21693416G>A	uc001rfb.2	-	14	1992	c.1737C>T	c.(1735-1737)CGC>CGT	p.R579R		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	579					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TCCTTTGGCGGCGTGACTGTT	0.438													72	77					0	0	0.003610	0	0
ETNK1	55500	broad.mit.edu	37	12	22826574	22826574	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:22826574C>T	uc001rft.2	+	6	1214	c.1192C>T	c.(1192-1194)CAA>TAA	p.Q398*	ETNK1_uc009ziz.2_Nonsense_Mutation_p.Q398*	NM_018638	NP_061108	Q9HBU6	EKI1_HUMAN	ethanolamine kinase 1 isoform A	398					phosphatidylethanolamine biosynthetic process	cytoplasm	ATP binding|ethanolamine kinase activity				0						ACTCTTCATTCAAGTCAATCA	0.353													25	21					0	0	0.003954	0	0
C12orf35	55196	broad.mit.edu	37	12	32135303	32135303	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:32135303G>T	uc001rks.2	+	4	1828	c.1414G>T	c.(1414-1416)GTA>TTA	p.V472L		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	472										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			AACACCAACAGTAGTGGAATC	0.383													36	53					9.04072e-19	1.43812e-18	0.003271	1	0
ADAMTS20	80070	broad.mit.edu	37	12	43862493	43862493	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:43862493C>T	uc010skx.1	-	8	1133	c.1133G>A	c.(1132-1134)GGT>GAT	p.G378D		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	378	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACATATGGTACCTAAATATGA	0.313													35	40					0	0	0.004878	0	0
PUS7L	83448	broad.mit.edu	37	12	44142338	44142338	+	Missense_Mutation	SNP	G	A	A	rs140009727		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:44142338G>A	uc001rnq.3	-	3	1474	c.985C>T	c.(985-987)CCT>TCT	p.P329S	PUS7L_uc001rnr.3_Missense_Mutation_p.P329S|PUS7L_uc001rns.3_Missense_Mutation_p.P329S|PUS7L_uc009zkb.2_Missense_Mutation_p.P16S	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.	329					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		AAATCCGAAGGAATAACACCA	0.348													54	67					0	0	0.003610	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458398	45458398	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:45458398C>T	uc001rol.2	-	1		c.797G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TACCTGTTTTCCTTTGGCTCC	0.522													11	14					0	0	0.001368	0	0
ARID2	196528	broad.mit.edu	37	12	46244715	46244715	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:46244715C>T	uc001ros.1	+	15	2809	c.2809C>T	c.(2809-2811)CAA>TAA	p.Q937*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q937*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q393*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q564*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q271*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	937	Gln-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TCAACAAGGTCAAACTTATGC	0.468													52	72					0	0	0.003610	0	0
ARID2	196528	broad.mit.edu	37	12	46244787	46244787	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:46244787C>T	uc001ros.1	+	15	2881	c.2881C>T	c.(2881-2883)CAG>TAG	p.Q961*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q961*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q417*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q588*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q295*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	961	Gln-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TCAGACAGTTCAGCTAACTGG	0.483													36	47					0	0	0.004878	0	0
FAM113B	91523	broad.mit.edu	37	12	47629524	47629524	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:47629524C>T	uc001rpn.2	+	4	1409	c.678C>T	c.(676-678)CAC>CAT	p.H226H	FAM113B_uc010slj.1_Silent_p.H106H|FAM113B_uc001rpq.2_Silent_p.H226H	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	226							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					AGAACCTGCACTGGGACGGGG	0.632													6	7					0	0	0.001168	0	0
FAM113B	91523	broad.mit.edu	37	12	47629761	47629761	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:47629761C>T	uc001rpn.2	+	4	1646	c.915C>T	c.(913-915)TTC>TTT	p.F305F	FAM113B_uc010slj.1_Silent_p.F185F|FAM113B_uc001rpq.2_Silent_p.F305F	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	305	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					tgcttgggttcccaccccagc	0.274													22	22					0	0	0.002299	0	0
COL2A1	1280	broad.mit.edu	37	12	48374376	48374376	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:48374376G>A	uc001rqu.2	-	39	2767	c.2586C>T	c.(2584-2586)GCC>GCT	p.A862A	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Silent_p.A793A	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	862	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GAGGACCAGGGGCACCAGCAT	0.622													3	8					0	0	0.000602	0	0
OR8S1	341568	broad.mit.edu	37	12	48919622	48919622	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:48919622G>A	uc010slu.1	+	1	208	c.208G>A	c.(208-210)GAT>AAT	p.D70N		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTCTTTTGTTGATCTCTGCTT	0.478													64	45					0	0	0.003610	0	0
CCDC65	85478	broad.mit.edu	37	12	49314977	49314977	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:49314977G>A	uc001rso.2	+	8	1433	c.1206G>A	c.(1204-1206)GAG>GAA	p.E402E		NM_033124	NP_149115	Q8IXS2	CCD65_HUMAN	coiled-coil domain containing 65	402	Potential.									ovary(1)|skin(1)	2						TAGGAATGGAGAATTTCTGGA	0.517													17	20					0	0	0.008871	0	0
DDN	23109	broad.mit.edu	37	12	49390542	49390542	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:49390542C>T	uc001rsv.1	-	2	2135	c.2117G>A	c.(2116-2118)GGA>GAA	p.G706E	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	706	Interaction with CD2AP and NPHS1 (By similarity).					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						CTTCCTATTTCCCTGTTGGGT	0.552											OREG0021778	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	29					0	0	0.002299	0	0
MLL2	8085	broad.mit.edu	37	12	49433379	49433379	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:49433379G>A	uc001rta.3	-	32	8068	c.8068C>T	c.(8068-8070)CTG>TTG	p.L2690L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2690	Potential.|LXXLL motif 1.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TGCCGAATCAGCAGCTCTCGT	0.572			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			12	10					0	0	0.001855	0	0
MLL2	8085	broad.mit.edu	37	12	49448351	49448351	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:49448351G>A	uc001rta.3	-	3	360	c.360C>T	c.(358-360)TTC>TTT	p.F120F		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	120					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGCCCTCAGGGAAACCAATCT	0.597			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			5	8					0	0	0.003080	0	0
PRPH	5630	broad.mit.edu	37	12	49690308	49690308	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:49690308G>A	uc001rtu.2	+	3	775	c.700G>A	c.(700-702)GAG>AAG	p.E234K		NM_006262	NP_006253	P41219	PERI_HUMAN	peripherin	234	Coil 1B.|Rod.						structural molecule activity				0						GCTGCACGAGGAGGTAAGTGG	0.607											OREG0021790	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	17					0	0	0.003163	0	0
KCNH3	23416	broad.mit.edu	37	12	49942799	49942799	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:49942799G>A	uc001ruh.1	+	8	1571	c.1311G>A	c.(1309-1311)GGG>GGA	p.G437G	KCNH3_uc010smj.1_Silent_p.G377G	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	437	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						AGGCCAACGGGACGGGGCTGG	0.682													9	15					0	0	0.008291	0	0
BIN2	51411	broad.mit.edu	37	12	51685437	51685437	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:51685437C>T	uc001ryg.2	-	10	1505	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	BIN2_uc009zlz.2_Missense_Mutation_p.E453K|BIN2_uc001ryh.2_Missense_Mutation_p.E361K|BIN2_uc010sng.1_Missense_Mutation_p.E459K	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	485						cytoplasm	protein binding			ovary(1)	1						TGGATGTTTTCATTTTCTTTG	0.443													15	18					0	0	0.004990	0	0
SLC4A8	9498	broad.mit.edu	37	12	51888738	51888738	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:51888738C>T	uc001rys.1	+	21	2957	c.2779C>T	c.(2779-2781)CGT>TGT	p.R927C	SLC4A8_uc001rym.2_Missense_Mutation_p.R874C|SLC4A8_uc001ryn.2_Missense_Mutation_p.R874C|SLC4A8_uc001ryo.2_Missense_Mutation_p.R874C|SLC4A8_uc010snj.1_Missense_Mutation_p.R954C|SLC4A8_uc001ryr.2_Missense_Mutation_p.R927C	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	927	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		GTTCTTTGATCGTCTAAAGCT	0.478													26	22					0	0	0.006320	0	0
KRT80	144501	broad.mit.edu	37	12	52566020	52566020	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:52566020G>A	uc001rzx.2	-	7	1238	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I	KRT80_uc001rzw.2_Silent_p.I415I|KRT80_uc001rzy.2_Silent_p.I380I	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	380	Rod.|Coil 2.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		TGTAGGTGGCGATCTCGATGT	0.667													35	52					0	0	0.005524	0	0
KRT85	3891	broad.mit.edu	37	12	52756740	52756740	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:52756740C>T	uc001sag.2	-	6	1095	c.975G>A	c.(973-975)GTG>GTA	p.V325V		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	325	Rod.|Coil 2.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CATGCCTGATCACCGTGGCCT	0.582													22	29					0	0	0.003954	0	0
KRT6B	3854	broad.mit.edu	37	12	52840992	52840992	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:52840992C>T	uc001sak.2	-	9	1725	c.1677G>A	c.(1675-1677)AGG>AGA	p.R559R		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	559	Tail.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		TGTAGCTCTTCCTGCTGGAGG	0.617													24	37					0	0	0.007291	0	0
KRT6B	3854	broad.mit.edu	37	12	52845376	52845376	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:52845376C>T	uc001sak.2	-	1	535	c.487G>A	c.(487-489)GAG>AAG	p.E163K		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	163	Coil 1A.|Rod.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		TGCTCACGCTCCTCGGCCCGC	0.607													12	58					0	0	0.003330	0	0
KRT6A	3853	broad.mit.edu	37	12	52881690	52881690	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:52881690G>A	uc001sam.2	-	9	1718	c.1509C>T	c.(1507-1509)GTC>GTT	p.V503V		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	503	Tail.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		AGCCACTGCCGACACCACTGG	0.607													16	21					0	0	0.010504	0	0
KRT5	3852	broad.mit.edu	37	12	52908824	52908824	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:52908824G>A	uc001san.2	-	9	1838	c.1675C>T	c.(1675-1677)CGA>TGA	p.R559*		NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	559	Tail.|Ser-rich.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCCAGCCCTCGGCCACTGCTT	0.473													12	13					0	0	0.004990	0	0
KRT74	121391	broad.mit.edu	37	12	52962029	52962029	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:52962029C>T	uc001sap.1	-	7	1327	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	427	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		CTCATGAGCTCCTGGTACTCG	0.637													27	37					0	0	0.009535	0	0
KRT74	121391	broad.mit.edu	37	12	52962062	52962062	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:52962062C>T	uc001sap.1	-	7	1294	c.1246G>A	c.(1246-1248)GAG>AAG	p.E416K		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	416	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		GCCAGCTCCTCCTTGGCCTGG	0.652													30	33					0	0	0.009535	0	0
KRT1	3848	broad.mit.edu	37	12	53072416	53072416	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:53072416C>T	uc001sau.1	-	2	775	c.716G>A	c.(715-717)CGA>CAA	p.R239Q	KRT1_uc001sav.1_Missense_Mutation_p.R239Q	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	239	Coil 1B.|Rod.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						CACTCTCCTTCGGAGATTGTT	0.473													50	70					0	0	0.003610	0	0
KRT4	3851	broad.mit.edu	37	12	53207559	53207559	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:53207559C>T	uc001saz.2	-	1	777	c.506G>A	c.(505-507)GGT>GAT	p.G169D		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	95						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GCCACCCTTACCACTGAAGGA	0.617													13	24					0	0	0.004007	0	0
ITGB7	3695	broad.mit.edu	37	12	53594188	53594188	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:53594188G>A	uc009zmv.2	-	2	111	c.40C>T	c.(40-42)CTG>TTG	p.L14L	ITGB7_uc001scc.2_Silent_p.L14L|ITGB7_uc010snz.1_RNA|ITGB7_uc010soa.1_Silent_p.L14L	NM_000889	NP_000880	P26010	ITB7_HUMAN	integrin, beta 7 precursor	14					cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|regulation of immune response	integrin complex	identical protein binding|metal ion binding|receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|breast(1)	8						CCTCTGCTCAGGACCAGCAGC	0.552													15	15					0	0	0.004990	0	0
CALCOCO1	57658	broad.mit.edu	37	12	54107533	54107533	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:54107533G>A	uc001sef.2	-	13	1887	c.1743C>T	c.(1741-1743)CCC>CCT	p.P581P	CALCOCO1_uc001see.2_Silent_p.P82P|CALCOCO1_uc010som.1_Silent_p.P496P|CALCOCO1_uc010son.1_Silent_p.P458P|CALCOCO1_uc001seh.2_Silent_p.P581P|CALCOCO1_uc009znd.2_Silent_p.P581P|CALCOCO1_uc001seg.2_Silent_p.P406P	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform	581	C-terminal AD (CTNNB1 binding site) (By similarity).				steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						GAGGAGAAATGGGAGCCGGCT	0.622													47	42					0	0	0.003610	0	0
HOXC13	3229	broad.mit.edu	37	12	54333195	54333195	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:54333195G>A	uc001sei.2	+	1	620	c.505G>A	c.(505-507)GCC>ACC	p.A169T	HOXC13_uc010sop.1_RNA	NM_017410	NP_059106	P31276	HXC13_HUMAN	homeobox C13	169						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						GTCCTCTAGGGCCAAGGAGTT	0.672			T	NUP98	AML								6	7					0	0	0.001984	0	0
ITGA5	3678	broad.mit.edu	37	12	54799659	54799659	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:54799659C>T	uc001sga.2	-	10	1026	c.958G>A	c.(958-960)GAA>AAA	p.E320K	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	320	Extracellular (Potential).|FG-GAP 5.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CTTACCTGTTCCCCTGAGAAG	0.542													31	52					0	0	0.005524	0	0
MUCL1	118430	broad.mit.edu	37	12	55250568	55250568	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:55250568G>A	uc001sgk.2	+	3	183	c.115G>A	c.(115-117)GAT>AAT	p.D39N		NM_058173	NP_477521	Q96DR8	MUCL1_HUMAN	small breast epithelial mucin precursor	39	Thr-rich.					extracellular region|membrane					0						tcctgctgatgatgaagcccc	0.194													8	10					0	0	0.003080	0	0
OR10A7	121364	broad.mit.edu	37	12	55615027	55615027	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:55615027C>T	uc010spf.1	+	1	219	c.219C>T	c.(217-219)TTC>TTT	p.F73F		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						AAGTATGTTTCACCTTGGTTA	0.408													70	81					0	0	0.003610	0	0
OR6C3	254786	broad.mit.edu	37	12	55725661	55725661	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:55725661C>T	uc010spj.1	+	1	177	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTATTTCTTCCTCCGGAACT	0.383													68	79					0	0	0.003610	0	0
MMP19	4327	broad.mit.edu	37	12	56231370	56231370	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:56231370C>T	uc001sib.2	-	8	1278	c.1157G>A	c.(1156-1158)TGG>TAG	p.W386*	MMP19_uc001sia.2_Nonsense_Mutation_p.W100*|MMP19_uc001sid.2_RNA|MMP19_uc010spw.1_Intron	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	386	Hemopexin-like 3.				angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						GTTGAGAGGCCAATAGAGAGC	0.458													48	55					0	0	0.003610	0	0
KIF5A	3798	broad.mit.edu	37	12	57976384	57976384	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:57976384G>A	uc001sor.1	+	27	3201	c.2993_splice	c.e27-1	p.G998_splice	KIF5A_uc010srr.1_Splice_Site_p.G909_splice|uc001sos.2_5'Flank	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A						blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						GATCTCTTCAGGAAATGCCAC	0.438													82	104					0	0	0.003610	0	0
OS9	10956	broad.mit.edu	37	12	58111979	58111979	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:58111979C>T	uc001spj.2	+	11	1244	c.1185C>T	c.(1183-1185)GTC>GTT	p.V395V	OS9_uc010srx.1_Silent_p.V189V|OS9_uc001spk.2_Silent_p.V395V|OS9_uc001spl.2_Silent_p.V395V|OS9_uc001spm.2_Silent_p.V395V|OS9_uc001spn.2_Silent_p.V396V|OS9_uc010sry.1_Silent_p.V363V|OS9_uc010srz.1_Silent_p.V336V	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	395					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			CTGCAGAAGTCCCTCAGAGGG	0.398													16	17					0	0	0.004007	0	0
WIF1	11197	broad.mit.edu	37	12	65471619	65471619	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:65471619C>T	uc001ssk.2	-	3	449	c.304G>A	c.(304-306)GAA>AAA	p.E102K		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	102	WIF.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		GACAGGAATTCATAGAAGTAT	0.512			T	HMGA2	pleomorphic salivary gland adenoma								19	17					0	0	0.002299	0	0
GRIP1	23426	broad.mit.edu	37	12	66765699	66765699	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:66765699G>A	uc001stk.2	-	22	2872	c.2631C>T	c.(2629-2631)ATC>ATT	p.I877I	GRIP1_uc010sta.1_Silent_p.I821I|GRIP1_uc001stj.2_Silent_p.I644I|GRIP1_uc001stl.1_Silent_p.I754I|GRIP1_uc001stm.2_Silent_p.I862I	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	929					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		TCCCCGACATGATTGTTGCCT	0.527													30	41					0	0	0.002096	0	0
GRIP1	23426	broad.mit.edu	37	12	66771023	66771023	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:66771023C>T	uc001stk.2	-	20	2749	c.2508G>A	c.(2506-2508)GAG>GAA	p.E836E	GRIP1_uc010sta.1_Silent_p.E780E|GRIP1_uc001stj.2_Silent_p.E618E|GRIP1_uc001stl.1_Silent_p.E728E|GRIP1_uc001stm.2_Silent_p.E836E	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	888					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		ACCAGAAGTTCTCCTCTTGTT	0.458													76	91					0	0	0.003610	0	0
LRRC10	376132	broad.mit.edu	37	12	70004284	70004284	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:70004284T>G	uc001svc.2	-	1	659	c.335A>C	c.(334-336)GAC>GCC	p.D112A		NM_201550	NP_963844	Q5BKY1	LRC10_HUMAN	leucine rich repeat containing 10	112	LRR 3.					nucleus					0	all_cancers(2;2.83e-105)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;1.98e-18)|GBM - Glioblastoma multiforme(2;7.43e-12)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			ACTGGGGAGGTCGCAGAGTTT	0.572													29	28					0	0	0.002096	0	0
PTPRB	5787	broad.mit.edu	37	12	70932012	70932012	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:70932012C>T	uc001swb.3	-	26	5246	c.5216_splice	c.e26-1	p.Y1739_splice	uc001svz.2_RNA|PTPRB_uc010sto.1_Splice_Site_p.Y1649_splice|PTPRB_uc010stp.1_Splice_Site_p.Y1649_splice|PTPRB_uc001swc.3_Splice_Site_p.Y1957_splice|PTPRB_uc001swa.3_Splice_Site_p.Y1869_splice	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B						angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GTGGCATCATCTGGAAGGAGA	0.338													43	25					0	0	0.003610	0	0
PTPRB	5787	broad.mit.edu	37	12	70949790	70949790	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:70949790G>A	uc001swb.3	-	17	4229	c.4199C>T	c.(4198-4200)TCC>TTC	p.S1400F	PTPRB_uc010sto.1_Missense_Mutation_p.S1310F|PTPRB_uc010stp.1_Missense_Mutation_p.S1310F|PTPRB_uc001swc.3_Missense_Mutation_p.S1618F|PTPRB_uc001swa.3_Missense_Mutation_p.S1530F	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1400	Fibronectin type-III 16.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CAGCTTTCTGGAAAACTCAAC	0.473													31	26					0	0	0.004289	0	0
PTPRR	5801	broad.mit.edu	37	12	71095033	71095033	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:71095033G>A	uc001swi.1	-	7	1494	c.1078C>T	c.(1078-1080)CCA>TCA	p.P360S	PTPRR_uc001swh.1_Missense_Mutation_p.P115S|PTPRR_uc009zrs.2_Missense_Mutation_p.P209S|PTPRR_uc010stq.1_Missense_Mutation_p.P248S|PTPRR_uc010str.1_Missense_Mutation_p.P209S	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	360	Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		CGTGGTGTTGGTATAGACACA	0.458													34	51					0	0	0.004289	0	0
NAV3	89795	broad.mit.edu	37	12	78574770	78574770	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:78574770G>A	uc001syp.2	+	30	5810	c.5637G>A	c.(5635-5637)AGG>AGA	p.R1879R	NAV3_uc001syo.2_Silent_p.R1857R|NAV3_uc010sub.1_Silent_p.R1336R|NAV3_uc009zsf.2_Silent_p.R688R	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1879	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CATCTTCCAGGCAGTCATTAG	0.473										HNSCC(70;0.22)			40	52					0	0	0.008740	0	0
PPFIA2	8499	broad.mit.edu	37	12	81671177	81671177	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:81671177C>T	uc001szo.1	-	28	3390	c.3229G>A	c.(3229-3231)GGA>AGA	p.G1077R	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	976										ovary(3)|lung(2)|pancreas(1)	6						CACATAATTCCATATTGTAAA	0.308													5	14					0	0	0.000602	0	0
PPFIA2	8499	broad.mit.edu	37	12	82070582	82070582	+	Silent	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:82070582C>G	uc001szo.1	-	4	452	c.291G>C	c.(289-291)GGG>GGC	p.G97G	PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(3)|lung(2)|pancreas(1)	6						GTGGATCAGCCCCCTTAGAAC	0.403													13	12					0	0	0.003163	0	0
GALNT4	8693	broad.mit.edu	37	12	89917457	89917457	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:89917457G>A	uc001tbd.2	-	1	1079	c.870C>T	c.(868-870)CCC>CCT	p.P290P	POC1B_uc001tba.2_Intron|POC1B_uc001tbb.2_Intron|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Silent_p.P287P|GALNT4_uc010suo.1_Intron	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4	290	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						TTTCCTGTTTGGGGACAGAAT	0.443													26	31					0	0	0.005443	0	0
NTN4	59277	broad.mit.edu	37	12	96106999	96106999	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:96106999C>T	uc001tei.2	-	4	1431	c.982G>A	c.(982-984)GAG>AAG	p.E328K	NTN4_uc009ztf.2_Missense_Mutation_p.E328K|NTN4_uc009ztg.2_Missense_Mutation_p.E291K	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	328	Laminin EGF-like 1.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CTTCTGCACTCGTTGGGAGCC	0.502													19	22					0	0	0.008871	0	0
CCDC38	120935	broad.mit.edu	37	12	96292419	96292419	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:96292419G>A	uc001tek.1	-	6	694	c.460C>T	c.(460-462)CTC>TTC	p.L154F		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	154	Potential.									skin(1)	1						TCATCTTGGAGCTTTTTCTCT	0.403													52	40					0	0	0.003610	0	0
MIR135A2	406926	broad.mit.edu	37	12	97957657	97957657	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:97957657G>A	hsa-mir-135a-2|MI0000453	+			c.68G>A			RMST_uc001tfa.1_Intron|uc001tfb.2_RNA																	0						CTCATGTAGGGATGGAAGCCA	0.378													8	10					0	0	0.008291	0	0
ANKS1B	56899	broad.mit.edu	37	12	99145169	99145169	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:99145169G>A	uc001tge.1	-	25	4053	c.3636C>T	c.(3634-3636)CCC>CCT	p.P1212P	ANKS1B_uc001tgf.1_Silent_p.P728P|ANKS1B_uc001tgk.2_Silent_p.P509P|ANKS1B_uc010svd.1_Silent_p.P218P|ANKS1B_uc001tgd.1_Silent_p.P378P|ANKS1B_uc009ztq.2_Silent_p.P114P|ANKS1B_uc010sve.1_Silent_p.P242P|ANKS1B_uc001tgh.3_Silent_p.P218P|ANKS1B_uc001tgi.2_Silent_p.P462P|ANKS1B_uc009ztr.2_Silent_p.P402P|ANKS1B_uc001tgj.2_Silent_p.P378P|ANKS1B_uc009ztp.2_Silent_p.P243P|ANKS1B_uc010svf.1_Silent_p.P242P|ANKS1B_uc001tgg.3_Silent_p.P310P|ANKS1B_uc010svg.1_Silent_p.P347P|ANKS1B_uc009zts.1_Silent_p.P438P	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	1212	PID.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		GCTTGGGGATGGGTTTGGAGG	0.488													24	22					0	0	0.003330	0	0
ANKS1B	56899	broad.mit.edu	37	12	99640632	99640632	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:99640632G>A	uc001tge.1	-	13	2184	c.1767C>T	c.(1765-1767)TCC>TCT	p.S589S	ANKS1B_uc001tgf.1_Silent_p.S169S|ANKS1B_uc001tgk.2_5'UTR|ANKS1B_uc009ztt.1_Silent_p.S555S	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	589						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CATCCTGTCGGGAGAGGTCAT	0.478													76	89					0	0	0.003610	0	0
ANKS1B	56899	broad.mit.edu	37	12	99898347	99898347	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:99898347C>T	uc001tge.1	-	10	1762	c.1345G>A	c.(1345-1347)GAA>AAA	p.E449K	ANKS1B_uc001tgf.1_Missense_Mutation_p.E29K|ANKS1B_uc009ztt.1_Missense_Mutation_p.E415K	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	449						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TTCTCATTTTCTGAAGGAAAT	0.378													14	8					0	0	0.001855	0	0
ANKS1B	56899	broad.mit.edu	37	12	99898353	99898353	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:99898353G>A	uc001tge.1	-	10	1756	c.1339C>T	c.(1339-1341)CCT>TCT	p.P447S	ANKS1B_uc001tgf.1_Missense_Mutation_p.P27S|ANKS1B_uc009ztt.1_Missense_Mutation_p.P413S	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	447						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TTTTCTGAAGGAAATGTATCC	0.388													7	14					0	0	0.003080	0	0
SLC17A8	246213	broad.mit.edu	37	12	100751249	100751249	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:100751249A>T	uc010svi.1	+	1	393	c.80A>T	c.(79-81)GAT>GTT	p.D27V	SLC17A8_uc009ztx.2_Missense_Mutation_p.D27V	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	27	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						GCCGTGGGAGATTCTTTGGGA	0.403													29	47					0	0	0.008361	0	0
ANO4	121601	broad.mit.edu	37	12	101295595	101295595	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:101295595G>A	uc010svm.1	+	2	604	c.32G>A	c.(31-33)GGA>GAA	p.G11E	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.G11E|ANO4_uc001thx.2_Missense_Mutation_p.G11E	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	11	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ATCACTAATGGAAAAACCAAA	0.493										HNSCC(74;0.22)			27	65					0	0	0.006320	0	0
ANO4	121601	broad.mit.edu	37	12	101333101	101333101	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:101333101G>A	uc010svm.1	+	4	741	c.169G>A	c.(169-171)GAT>AAT	p.D57N	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.D22N|ANO4_uc001thx.2_Missense_Mutation_p.D57N	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	57	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AGTGGCCAAGGATGTCAATAT	0.383										HNSCC(74;0.22)			39	61					0	0	0.003610	0	0
UTP20	27340	broad.mit.edu	37	12	101750436	101750436	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:101750436C>T	uc001tia.1	+	42	5655	c.5499C>T	c.(5497-5499)TCC>TCT	p.S1833S		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1833					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						TAATGCAGTCCCTTCCACAAG	0.363													15	22					0	0	0.006122	0	0
SPIC	121599	broad.mit.edu	37	12	101880268	101880268	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:101880268A>T	uc001tid.2	+	6	625	c.466A>T	c.(466-468)AAA>TAA	p.K156*	SPIC_uc009zua.2_Nonsense_Mutation_p.K31*|SPIC_uc010svp.1_Nonsense_Mutation_p.K155*	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	156	ETS.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						GCTTTGGGGGAAAAGAAAAGG	0.423													22	35					0	0	0.010504	0	0
MYBPC1	4604	broad.mit.edu	37	12	102025435	102025435	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:102025435G>A	uc001tii.2	+	5	403	c.301G>A	c.(301-303)GAC>AAC	p.D101N	MYBPC1_uc001tif.1_Missense_Mutation_p.D114N|MYBPC1_uc001tig.2_Missense_Mutation_p.D126N|MYBPC1_uc010svq.1_Missense_Mutation_p.D88N|MYBPC1_uc001tih.2_Missense_Mutation_p.D126N|MYBPC1_uc001tij.2_Missense_Mutation_p.D101N|MYBPC1_uc010svr.1_Missense_Mutation_p.D101N|MYBPC1_uc010svs.1_Missense_Mutation_p.D101N|MYBPC1_uc010svt.1_Missense_Mutation_p.D89N|MYBPC1_uc010svu.1_Missense_Mutation_p.D101N|MYBPC1_uc001tik.2_Missense_Mutation_p.D75N	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	101	Ig-like C2-type 1.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						AAAATGGATGGACCTGGCCAG	0.498													36	53					0	0	0.004289	0	0
C12orf42	374470	broad.mit.edu	37	12	103696155	103696155	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:103696155G>A	uc001tjt.2	-	6	902	c.814C>T	c.(814-816)CCC>TCC	p.P272S	C12orf42_uc001tjs.2_Intron|C12orf42_uc009zuf.1_Missense_Mutation_p.P272S|C12orf42_uc001tju.2_Missense_Mutation_p.P177S	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	272										ovary(1)|central_nervous_system(1)	2						TTTCCGACGGGATTTCCGGAC	0.657													21	23					0	0	0.003330	0	0
C12orf42	374470	broad.mit.edu	37	12	103696160	103696160	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:103696160C>T	uc001tjt.2	-	6	897	c.809G>A	c.(808-810)GGA>GAA	p.G270E	C12orf42_uc001tjs.2_Intron|C12orf42_uc009zuf.1_Missense_Mutation_p.G270E|C12orf42_uc001tju.2_Missense_Mutation_p.G175E	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	270										ovary(1)|central_nervous_system(1)	2						GACGGGATTTCCGGACGCGCC	0.662													19	28					0	0	0.002299	0	0
CMKLR1	1240	broad.mit.edu	37	12	108685969	108685969	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:108685969C>A	uc009zuw.2	-	3	962	c.771G>T	c.(769-771)AAG>AAT	p.K257N	CMKLR1_uc001tmw.2_Missense_Mutation_p.K257N|CMKLR1_uc001tmv.2_Missense_Mutation_p.K255N|CMKLR1_uc009zuv.2_Missense_Mutation_p.K257N	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	257	Cytoplasmic (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						TCTTGAAGGGCTTCTTGGTCT	0.547													16	33					0.00498961	0.00786408	0.004990	1	0
FOXN4	121643	broad.mit.edu	37	12	109723114	109723114	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:109723114T>C	uc001toe.3	-	8	1001	c.896A>G	c.(895-897)AAC>AGC	p.N299S	FOXN4_uc009zvg.2_Missense_Mutation_p.N96S|FOXN4_uc001tof.3_Missense_Mutation_p.N119S	NM_213596	NP_998761	Q96NZ1	FOXN4_HUMAN	forkhead box N4	299					axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|lung(1)	2						CTCACCAGGGTTGGCCATACT	0.537													3	7					0	0	0.009096	0	0
CCDC63	160762	broad.mit.edu	37	12	111321968	111321968	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:111321968G>A	uc001trv.1	+	8	1183	c.988G>A	c.(988-990)GAG>AAG	p.E330K	CCDC63_uc010sye.1_Missense_Mutation_p.E290K|CCDC63_uc001trw.1_Missense_Mutation_p.E245K	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	330										skin(6)|ovary(1)|pancreas(1)	8						TCTGGCCAAGGAGGAGAAGAA	0.532													28	31					0	0	0.007291	0	0
CUX2	23316	broad.mit.edu	37	12	111748213	111748213	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:111748213G>A	uc001tsa.1	+	15	1780	c.1627G>A	c.(1627-1629)GCG>ACG	p.A543T		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	543						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TGGGGGCGGAGCGGCGGGGCC	0.706													4	8					0	0	0.001984	0	0
CUX2	23316	broad.mit.edu	37	12	111785488	111785489	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:111785488_111785489GA>AT	uc001tsa.1	+	22	3973_3974	c.3820_3821GA>AT	c.(3820-3822)GAA>ATA	p.E1274I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1274						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						AACCGTGAAGGAACTGGAGCTT	0.619													11	21					0	0	0.004672	0	0
MAPKAPK5	8550	broad.mit.edu	37	12	112308966	112308966	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:112308966T>C	uc001tta.2	+	7	820	c.561T>C	c.(559-561)CCT>CCC	p.P187P	MAPKAPK5_uc001tsz.2_Silent_p.P187P|MAPKAPK5_uc001ttb.2_Silent_p.P120P	NM_139078	NP_620777	Q8IW41	MAPK5_HUMAN	MAP kinase-activated protein kinase 5 isoform 2	187	Protein kinase.				signal transduction	cytoplasm|nucleus	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)	3						AGTTCACCCCTTATTATGTAG	0.448													43	54					0	0	0.003610	0	0
C12orf51	283450	broad.mit.edu	37	12	112677814	112677814	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:112677814C>T	uc009zwc.2	-	26	3728	c.3710G>A	c.(3709-3711)TGT>TAT	p.C1237Y		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CATCCCACCACATGTGAGTTC	0.502													33	32					0	0	0.004289	0	0
OAS3	4940	broad.mit.edu	37	12	113376405	113376405	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:113376405G>A	uc001tug.2	+	1	157	c.70G>A	c.(70-72)GAG>AAG	p.E24K	OAS3_uc001tue.2_Missense_Mutation_p.E24K|OAS3_uc001tuf.2_Missense_Mutation_p.E24K	NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	24	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						GCCGCGGAAGGAGTTCGTAGA	0.726													5	10					0	0	0.004482	0	0
RASAL1	8437	broad.mit.edu	37	12	113553507	113553507	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:113553507G>A	uc001tum.1	-	11	1229	c.936C>T	c.(934-936)CTC>CTT	p.L312L	RASAL1_uc010syp.1_Silent_p.L312L|RASAL1_uc001tul.2_Silent_p.L312L|RASAL1_uc001tun.1_Silent_p.L312L|RASAL1_uc010syq.1_Silent_p.L312L|RASAL1_uc001tuo.3_Silent_p.L312L|RASAL1_uc010syr.1_Silent_p.L312L	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	312	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						GGCCAAGAAAGAGTTTCACCA	0.647													16	22					0	0	0.006122	0	0
NOS1	4842	broad.mit.edu	37	12	117696239	117696239	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:117696239C>T	uc001twm.1	-	16	3180	c.2494G>A	c.(2494-2496)GAA>AAA	p.E832K	NOS1_uc001twn.1_Missense_Mutation_p.E2K	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	832	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TGCCTCATTTCCATCAAAGCA	0.498													26	33					0	0	0.005443	0	0
KSR2	283455	broad.mit.edu	37	12	118016958	118016958	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:118016958C>T	uc001two.2	-	7	1259	c.1204G>A	c.(1204-1206)GGG>AGG	p.G402R		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	431	Phorbol-ester/DAG-type.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAAAGCATCCCTTTCCCACAG	0.488													14	15					0	0	0.010504	0	0
KSR2	283455	broad.mit.edu	37	12	118199276	118199276	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:118199276C>T	uc001two.2	-	4	494	c.439G>A	c.(439-441)GGG>AGG	p.G147R		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	176					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTCTCCTTCCCCGTCTCTGTC	0.597													33	45					0	0	0.004878	0	0
GCN1L1	10985	broad.mit.edu	37	12	120575762	120575762	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:120575762G>A	uc001txo.2	-	48	6349	c.6336C>T	c.(6334-6336)ATC>ATT	p.I2112I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2112					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCGCTGGGAGGATCACGCCAA	0.597													12	15					0	0	0.002450	0	0
RNF10	9921	broad.mit.edu	37	12	121014413	121014413	+	Silent	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:121014413A>C	uc001typ.3	+	17	2863	c.2380A>C	c.(2380-2382)AGA>CGA	p.R794R	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Silent_p.R705R	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	794					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					aggaaagaaaagaaaaaaaca	0.378													34	48					0	0	0.003271	0	0
TMEM120B	144404	broad.mit.edu	37	12	122181600	122181600	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:122181600T>C	uc001ubc.3	+	2	279	c.135T>C	c.(133-135)AGT>AGC	p.S45S	TMEM120B_uc009zxh.2_Silent_p.S45S	NM_001080825	NP_001074294	A0PK00	T120B_HUMAN	transmembrane protein 120B	45	Potential.					integral to membrane					0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;5.75e-05)|Epithelial(86;0.000128)|BRCA - Breast invasive adenocarcinoma(302;0.238)		TGTGTAGCAGTTCCATCAGTA	0.547													27	34					0	0	0.002836	0	0
KNTC1	9735	broad.mit.edu	37	12	123060103	123060103	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:123060103C>T	uc001ucv.2	+	28	2559	c.2396C>T	c.(2395-2397)GCC>GTC	p.A799V	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	799					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		ATATTTGATGCCGTGCTCAAG	0.488													4	3					0	0	0.000602	0	0
GPR81	27198	broad.mit.edu	37	12	123214031	123214031	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:123214031G>A	uc001ucz.2	-	1	1099	c.856C>T	c.(856-858)CCC>TCC	p.P286S	GPR81_uc001ucw.1_RNA	NM_032554	NP_115943	Q9BXC0	HCAR1_HUMAN	G protein-coupled receptor 81	286	Cytoplasmic (Potential).				response to estradiol stimulus	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.14e-05)|Epithelial(86;3.25e-05)|BRCA - Breast invasive adenocarcinoma(302;0.197)		TAGAATTTGGGAAAGGAGGGG	0.498													58	69					0	0	0.003610	0	0
RILPL2	196383	broad.mit.edu	37	12	123915204	123915204	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:123915204C>T	uc001uey.1	-	2	639	c.342G>A	c.(340-342)GTG>GTA	p.V114V		NM_145058	NP_659495	Q969X0	RIPL2_HUMAN	Rab interacting lysosomal protein-like 2	114	Potential.					cytosol|plasma membrane	identical protein binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000546)|Epithelial(86;0.00179)|all cancers(50;0.0168)		GGCCCAGGTTCACCTGGAAGA	0.363													25	33					0	0	0.004656	0	0
EIF2B1	1967	broad.mit.edu	37	12	124118248	124118248	+	Splice_Site	SNP	C	T	T	rs11572912		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:124118248C>T	uc001ufm.2	-	1	1	c.-142_splice	c.e1-1		GTF2H3_uc001ufo.1_5'Flank|GTF2H3_uc010tau.1_5'Flank|EIF2B1_uc001ufn.2_Splice_Site|EIF2B1_uc010tat.1_Splice_Site	NM_001414	NP_001405	Q14232	EI2BA_HUMAN	eukaryotic translation initiation factor 2B,						cellular response to stimulus|oligodendrocyte development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex|membrane fraction|plasma membrane	protein binding|translation initiation factor activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.67e-05)|Epithelial(86;0.000353)|all cancers(50;0.00489)		CCGTACCCCTCTTCCGGCGCA	0.711													8	5					0	0	0.003080	0	0
DNAH10	196385	broad.mit.edu	37	12	124323164	124323164	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:124323164C>T	uc001uft.3	+	28	4735	c.4710C>T	c.(4708-4710)TTC>TTT	p.F1570F		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1570	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GGTTCTTCTTCATTTCTGACG	0.527													47	52					0	0	0.003610	0	0
DNAH10	196385	broad.mit.edu	37	12	124371737	124371737	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:124371737G>A	uc001uft.3	+	51	8543	c.8518G>A	c.(8518-8520)GAA>AAA	p.E2840K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2840	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CAGTTTCCGGGAAGACCTGAA	0.547													22	9					0	0	0.002299	0	0
CCDC92	80212	broad.mit.edu	37	12	124422086	124422086	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:124422086G>A	uc001ufw.1	-	5	662	c.515C>T	c.(514-516)TCC>TTC	p.S172F	CCDC92_uc001ufv.1_Missense_Mutation_p.S155F|CCDC92_uc001ufx.1_Missense_Mutation_p.S172F|CCDC92_uc001ufy.1_Missense_Mutation_p.S155F	NM_025140	NP_079416	Q53HC0	CCD92_HUMAN	coiled-coil domain containing 92	172											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.0002)|OV - Ovarian serous cystadenocarcinoma(86;0.000222)|all cancers(50;0.00129)|BRCA - Breast invasive adenocarcinoma(302;0.242)		GGTCCCGCTGGAGCTCATGAG	0.667													15	24					0	0	0.002450	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834317	125834317	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:125834317C>T	uc001uhe.1	+	2	380	c.372C>T	c.(370-372)ATC>ATT	p.I124I		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	124	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AATCCCACATCCTTGACAGCT	0.468													60	57					0	0	0.003610	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138670	126138670	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:126138670C>T	uc001uhe.1	+	9	2659	c.2651C>T	c.(2650-2652)CCT>CTT	p.P884L	TMEM132B_uc001uhf.1_Missense_Mutation_p.P396L	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	884	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CCCAATAATCCTAGTGACCTC	0.507													27	34					0	0	0.006320	0	0
TMEM132C	92293	broad.mit.edu	37	12	128899718	128899718	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:128899718G>A	uc001uhs.3	+	1	428	c.191G>A	c.(190-192)CGA>CAA	p.R64Q		NM_001136103	NP_001129575	Q8N3T6	T132C_HUMAN	transmembrane protein 132C	176	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						TTTGCTTTCCGAGAAACCAGA	0.637													4	6					0	0	0.000602	0	0
TMEM132D	121256	broad.mit.edu	37	12	130015696	130015696	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:130015696G>A	uc009zyl.1	-	3	1351	c.1023C>T	c.(1021-1023)TCC>TCT	p.S341S		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	341	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CATCCCAAATGGAAGGGCTGC	0.537													32	39					0	0	0.003755	0	0
FZD10	11211	broad.mit.edu	37	12	130648761	130648761	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:130648761G>A	uc001uii.2	+	1	1730	c.1274G>A	c.(1273-1275)AGG>AAG	p.R425K	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	425	Cytoplasmic (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		CACATCCGGAGGGTGATGAAG	0.622													24	31					0	0	0.003330	0	0
ULK1	8408	broad.mit.edu	37	12	132394824	132394824	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:132394824C>T	uc001uje.2	+	11	1102	c.834C>T	c.(832-834)CTC>CTT	p.L278L		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	278	Protein kinase.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		ACCCTTTCCTCGATGCCAGCC	0.632													67	65					0	0	0.003610	0	0
EP400	57634	broad.mit.edu	37	12	132491260	132491260	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:132491260C>T	uc001ujn.2	+	14	3177	c.3142C>T	c.(3142-3144)CCA>TCA	p.P1048S	EP400_uc001ujl.2_Missense_Mutation_p.P1047S|EP400_uc001ujm.2_Missense_Mutation_p.P1048S	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1084	Interactions with RUVBL1 and RUVBL2.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GTTTAATGCTCCATCTTTGTT	0.398													16	25					0	0	0.004990	0	0
DDX51	317781	broad.mit.edu	37	12	132625406	132625406	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:132625406C>T	uc001ujy.3	-	9	1449	c.1410G>A	c.(1408-1410)TCG>TCA	p.S470S		NM_175066	NP_778236	Q8N8A6	DDX51_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	470					rRNA processing	nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			lung(1)|pancreas(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.59e-08)|Epithelial(86;3.62e-07)|all cancers(50;2.13e-05)		CATACTTCCCCGAATCCCCGT	0.617													26	32					0	0	0.008361	0	0
LOC284232	284232	broad.mit.edu	37	13	19409639	19409639	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:19409639C>T	uc010tcj.1	-	1		c.36471G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AATAAAGCCTCTTTGGATATT	0.328													44	41					0	0	0.002522	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19622291	19622291	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:19622291G>A	uc001umb.1	-	10		c.3520C>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						TCAAGCAGGCGACGATGGGGG	0.577													15	16					0	0	0.002450	0	0
TPTE2	93492	broad.mit.edu	37	13	20000566	20000566	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:20000566G>A	uc001umd.2	-	19	1605	c.1394C>T	c.(1393-1395)TCG>TTG	p.S465L	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Missense_Mutation_p.S354L|TPTE2_uc001ume.2_Missense_Mutation_p.S388L|TPTE2_uc009zzm.2_Missense_Mutation_p.S136L|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.S136L	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	465	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ATTACTCACCGAAGAGAAAAA	0.368													11	85					0	0	0.004007	0	0
MPHOSPH8	54737	broad.mit.edu	37	13	20222625	20222625	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:20222625G>A	uc001umh.2	+	4	1291	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K	MPHOSPH8_uc001umg.2_Missense_Mutation_p.E428K|MPHOSPH8_uc001umi.2_Missense_Mutation_p.E125K	NM_017520	NP_059990	Q99549	MPP8_HUMAN	M-phase phosphoprotein 8	428					cell cycle	cytoplasm|nucleus					0		all_cancers(29;2.83e-16)|all_lung(29;1.16e-17)|all_epithelial(30;8.13e-16)|Lung NSC(5;6.91e-15)|Lung SC(185;0.0367)		all cancers(112;8.43e-05)|Epithelial(112;0.000426)|OV - Ovarian serous cystadenocarcinoma(117;0.00596)|Lung(94;0.015)|LUSC - Lung squamous cell carcinoma(192;0.0795)		TTCTGACAAGGAAGAAAAAGG	0.318													16	11					0	0	0.007413	0	0
GJB6	10804	broad.mit.edu	37	13	20797386	20797386	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:20797386G>A	uc001umz.3	-	3	787	c.234C>T	c.(232-234)GCC>GCT	p.A78A	GJB6_uc001unc.3_Silent_p.A78A|GJB6_uc001una.3_Silent_p.A78A|GJB6_uc001und.3_Silent_p.A78A|GJB6_uc001unb.3_Silent_p.A78A	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	78	Helical; (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		TCAGCTGGAGGGCCCACAGCC	0.572													16	20					0	0	0.004007	0	0
IL17D	53342	broad.mit.edu	37	13	21295856	21295856	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:21295856C>T	uc001unm.2	+	3	480	c.372C>T	c.(370-372)TTC>TTT	p.F124F		NM_138284	NP_612141	Q8TAD2	IL17D_HUMAN	interleukin 17D precursor	124					inflammatory response	extracellular space	cytokine activity				0		all_cancers(29;9.63e-24)|all_epithelial(30;1.09e-19)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000301)|Epithelial(112;0.000633)|OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Lung(94;0.0154)|LUSC - Lung squamous cell carcinoma(192;0.0414)		CCGGGCTGTTCGGCGAGGAGG	0.706													20	34					0	0	0.010504	0	0
FGF9	2254	broad.mit.edu	37	13	22275471	22275471	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:22275471G>A	uc001uog.2	+	3	1361	c.524G>A	c.(523-525)GGG>GAG	p.G175E		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	175					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		CCGAGAGAAGGGACTAGGACT	0.418													26	24					0	0	0.004656	0	0
SACS	26278	broad.mit.edu	37	13	23907395	23907395	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:23907395G>A	uc001uon.2	-	10	11209	c.10620C>T	c.(10618-10620)TTC>TTT	p.F3540F	SACS_uc001uoo.2_Silent_p.F3393F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3540					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TTCTATCATAGAAATGCTTTG	0.299													14	12					0	0	0.001855	0	0
MIPEP	4285	broad.mit.edu	37	13	24433009	24433009	+	Missense_Mutation	SNP	G	A	A	rs149545169	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:24433009G>A	uc001uox.3	-	10	1196	c.1096C>T	c.(1096-1098)CGT>TGT	p.R366C		NM_005932	NP_005923	Q99797	MIPEP_HUMAN	mitochondrial intermediate peptidase precursor	366					protein processing involved in protein targeting to mitochondrion|proteolysis	mitochondrial matrix	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		all_cancers(29;1.83e-22)|all_epithelial(30;8.75e-19)|all_lung(29;9.17e-18)|Lung SC(185;0.0225)|Breast(139;0.14)		all cancers(112;0.00389)|Epithelial(112;0.0266)|OV - Ovarian serous cystadenocarcinoma(117;0.0717)|Lung(94;0.207)|GBM - Glioblastoma multiforme(144;0.232)		CTTTCTGCACGAATCACACCA	0.408													16	20					0	0	0.010504	0	0
CDX2	1045	broad.mit.edu	37	13	28539094	28539094	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:28539094C>T	uc001urv.2	-	2	774	c.600G>A	c.(598-600)GAG>GAA	p.E200E		NM_001265	NP_001256	Q99626	CDX2_HUMAN	caudal type homeobox 2	200	Homeobox.				organ morphogenesis|transcription from RNA polymerase II promoter		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(110;0.191)|all_hematologic(3;0.0447)|Acute lymphoblastic leukemia(6;0.155)	Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0407)|all cancers(112;0.0491)|OV - Ovarian serous cystadenocarcinoma(117;0.199)		CCTTCTCCAGCTCCAGCCGCT	0.582			T	ETV6	AML								6	14					0	0	0.001984	0	0
FLT3	2322	broad.mit.edu	37	13	28589385	28589385	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:28589385G>A	uc001urw.2	-	22	2744	c.2662C>T	c.(2662-2664)CCT>TCT	p.P888S	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.P847S	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	888	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity	p.G885fs*4(1)		haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	CCAGGGTAAGGATTCACACCT	0.289			Mis|O		AML|ALL								6	9					0	0	0.001984	0	0
FLT3	2322	broad.mit.edu	37	13	28636006	28636006	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:28636006G>C	uc001urw.2	-	3	448	c.366C>G	c.(364-366)AAC>AAG	p.N122K	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.N122K	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	122	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	CCACTTACCTGTTTTGTAAAT	0.388			Mis|O		AML|ALL								15	22					0	0	0.004007	0	0
MTUS2	23281	broad.mit.edu	37	13	29933550	29933550	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:29933550G>A	uc001usl.3	+	6	3145	c.3087G>A	c.(3085-3087)CTG>CTA	p.L1029L		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1019	Localization to the growing distal tip of microtubules.|Potential.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AAGGGGAGCTGAAGAGGGCCA	0.627													8	6					0	0	0.004482	0	0
B3GALTL	145173	broad.mit.edu	37	13	31850896	31850896	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:31850896C>T	uc010aaz.2	+	10	948	c.838C>T	c.(838-840)CAT>TAT	p.H280Y	B3GALTL_uc001utn.3_RNA	NM_194318	NP_919299	Q6Y288	B3GLT_HUMAN	beta 1,3-galactosyltransferase-like	280	Lumenal (Potential).				fucose metabolic process	endoplasmic reticulum membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2		Lung SC(185;0.0257)		all cancers(112;0.00436)|Epithelial(112;0.0285)|OV - Ovarian serous cystadenocarcinoma(117;0.0512)|GBM - Glioblastoma multiforme(144;0.184)		CAAGAAATTTCATGGTGACAG	0.313													34	30					0	0	0.003755	0	0
RXFP2	122042	broad.mit.edu	37	13	32366148	32366148	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:32366148G>A	uc001utt.2	+	15	1422	c.1351G>A	c.(1351-1353)GCT>ACT	p.A451T	RXFP2_uc010aba.2_Missense_Mutation_p.A410T	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	451	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TACAACTCACGCTATGTCCAT	0.328													25	28					0	0	0.004656	0	0
RXFP2	122042	broad.mit.edu	37	13	32376410	32376410	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:32376410G>A	uc001utt.2	+	18	2204	c.2133G>A	c.(2131-2133)AGG>AGA	p.R711R	RXFP2_uc010aba.2_Silent_p.R670R	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	711	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		AACATCAGAGGAAATCAATTT	0.353													48	60					0	0	0.003610	0	0
STARD13	90627	broad.mit.edu	37	13	33701591	33701591	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:33701591C>T	uc001uuw.2	-	6	1967	c.1841G>A	c.(1840-1842)AGC>AAC	p.S614N	STARD13_uc001uuu.2_Missense_Mutation_p.S606N|STARD13_uc001uuv.2_Missense_Mutation_p.S496N|STARD13_uc001uux.2_Missense_Mutation_p.S579N|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.S599N	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	614					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		CTGGAGCAGGCTCAGCTGGCT	0.627													3	4					0	0	0.004672	0	0
DCLK1	9201	broad.mit.edu	37	13	36379876	36379876	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:36379876C>T	uc001uvf.2	-	15	2137	c.1904G>A	c.(1903-1905)CGA>CAA	p.R635Q	DCLK1_uc001uve.3_Missense_Mutation_p.R328Q|DCLK1_uc010teh.1_Missense_Mutation_p.R328Q|DCLK1_uc010abk.2_Missense_Mutation_p.R155Q	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	635	Protein kinase.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		AGCAGAAAATCGCTGATCTAC	0.413													52	63					0	0	0.003610	0	0
FOXO1	2308	broad.mit.edu	37	13	41134661	41134661	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:41134661T>C	uc001uxl.3	-	2	1352	c.967A>G	c.(967-969)ACT>GCT	p.T323A	FOXO1_uc010acc.1_Missense_Mutation_p.T138A	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	323					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		CCACTAATAGTACTAGCATTT	0.483													68	55					0	0	0.003610	0	0
KBTBD7	84078	broad.mit.edu	37	13	41766769	41766769	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:41766769C>T	uc001uxw.1	-	1	1934	c.1625G>A	c.(1624-1626)GGA>GAA	p.G542E	uc001uxv.1_Intron	NM_032138	NP_115514	Q8WVZ9	KBTB7_HUMAN	kelch repeat and BTB (POZ) domain containing 7	542	Kelch 4.						protein binding			ovary(1)	1		Lung NSC(96;0.000105)|Breast(139;0.00715)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.21e-09)|Epithelial(112;6.99e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000196)|GBM - Glioblastoma multiforme(144;0.000857)|BRCA - Breast invasive adenocarcinoma(63;0.0669)		CCTCCATTCTCCCCTAGCTGG	0.418													49	54					0	0	0.003610	0	0
KIAA0564	23078	broad.mit.edu	37	13	42179322	42179322	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:42179322G>A	uc001uyj.2	-	40	5038	c.4968C>T	c.(4966-4968)ATC>ATT	p.I1656I		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1656						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TATCCAGGATGATTCGGAGGG	0.433													43	42					0	0	0.003610	0	0
THSD1P1	374500	broad.mit.edu	37	13	52854826	52854826	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:52854826C>T	uc001vgm.1	-	5		c.446G>A								Homo sapiens cDNA FLJ14630 fis, clone NT2RP2000459.												0						CCATCACTTTCGTATCACCTT	0.284													23	80					0	0	0.004656	0	0
DACH1	1602	broad.mit.edu	37	13	72255972	72255972	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:72255972G>A	uc010thn.1	-	3	1342	c.919C>T	c.(919-921)CAT>TAT	p.H307Y	DACH1_uc010tho.1_Missense_Mutation_p.H307Y|DACH1_uc010thp.1_Missense_Mutation_p.H307Y	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	307	Interaction with SIX6 and HDAC3 (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		GGGACAGAATGCGGCATGATG	0.423													28	32					0	0	0.002445	0	0
TBC1D4	9882	broad.mit.edu	37	13	75863085	75863085	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:75863085G>A	uc001vjl.1	-	20	3995	c.3648C>T	c.(3646-3648)CTC>CTT	p.L1216L	TBC1D4_uc010tht.1_Silent_p.L426L|TBC1D4_uc010thu.1_Silent_p.L373L|TBC1D4_uc010aer.2_Silent_p.L1208L|TBC1D4_uc010aes.2_Silent_p.L1153L	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1216						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		ATTTTTCTAGGAGGTCCATGT	0.408													40	48					0	0	0.009718	0	0
MYCBP2	23077	broad.mit.edu	37	13	77642739	77642739	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:77642739G>A	uc001vkf.2	-	71	12109	c.12018C>T	c.(12016-12018)TTC>TTT	p.F4006F	MYCBP2_uc010aev.2_Silent_p.F3410F|MYCBP2_uc001vke.2_Silent_p.F623F	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4006					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GAAGCAGCGAGAAGAGATCCT	0.473													19	22					0	0	0.006122	0	0
MYCBP2	23077	broad.mit.edu	37	13	77642939	77642939	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:77642939G>A	uc001vkf.2	-	71	11909	c.11818C>T	c.(11818-11820)CGC>TGC	p.R3940C	MYCBP2_uc010aev.2_Missense_Mutation_p.R3344C|MYCBP2_uc001vke.2_Missense_Mutation_p.R557C	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3940					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GCTTCCATGCGAATAGCTTGG	0.388													42	42					0	0	0.003610	0	0
RNF219	79596	broad.mit.edu	37	13	79189831	79189831	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:79189831G>A	uc001vkw.1	-	6	2124	c.2065C>T	c.(2065-2067)CCT>TCT	p.P689S	uc001vku.1_RNA|RNF219_uc010afb.1_Missense_Mutation_p.P499S|RNF219_uc010afc.2_Intron	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	689	Ser-rich.						zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		GTAGACCAAGGAGACTGAAGG	0.398													49	55					0	0	0.003610	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368512	86368512	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:86368512C>T	uc001vll.1	-	2	2591	c.2132G>A	c.(2131-2133)GGA>GAA	p.G711E	SLITRK6_uc010afe.1_Missense_Mutation_p.G164E	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	711	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TGCATCACTTCCTTCTTTCTC	0.413													98	114					0	0	0.003610	0	0
SLITRK6	84189	broad.mit.edu	37	13	86369238	86369238	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:86369238T>C	uc001vll.1	-	2	1865	c.1406A>G	c.(1405-1407)AAC>AGC	p.N469S	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	469	Extracellular (Potential).|LRR 10.			N -> H (in Ref. 1).		integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TTGGAGGAGGTTGTTATTTAA	0.328													42	42					0	0	0.002522	0	0
CLDN10	9071	broad.mit.edu	37	13	96205164	96205164	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:96205164T>G	uc001vmh.2	+	1	218	c.157T>G	c.(157-159)TGC>GGC	p.C53G	CLDN10_uc001vmg.2_Intron|CLDN10_uc010tii.1_Intron	NM_006984	NP_008915	P78369	CLD10_HUMAN	claudin 10 isoform b	53	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.18)			GTGGAAGGCGTGCGTTACCGA	0.647													19	15					0	0	0.002780	0	0
UGGT2	55757	broad.mit.edu	37	13	96553067	96553067	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:96553067A>G	uc001vmt.2	-	22	2798	c.2628T>C	c.(2626-2628)AAT>AAC	p.N876N		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	876					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						TTACTCTCCCATTGCTGACAA	0.393													26	39					0	0	0.002096	0	0
IPO5	3843	broad.mit.edu	37	13	98671974	98671974	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:98671974C>T	uc001vne.2	+	27	3210	c.3030C>T	c.(3028-3030)GTC>GTT	p.V1010V		NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	992					interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						TTGAAGAGGTCCTTCCACACT	0.408													31	48					0	0	0.002836	0	0
FARP1	10160	broad.mit.edu	37	13	99037972	99037972	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:99037972G>A	uc001vnj.2	+	8	999	c.663G>A	c.(661-663)CGG>CGA	p.R221R	FARP1_uc001vnh.2_Silent_p.R221R	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	221	FERM.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			TTGCCCGTCGGCTAGAGATGT	0.488													48	47					0	0	0.003610	0	0
NALCN	259232	broad.mit.edu	37	13	101721152	101721152	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:101721152C>T	uc001vox.1	-	38	4414	c.4225G>A	c.(4225-4227)GAA>AAA	p.E1409K		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1409	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TATGTAAATTCATCTGGAGTA	0.398													15	19					0	0	0.004007	0	0
LIG4	3981	broad.mit.edu	37	13	108862926	108862926	+	Missense_Mutation	SNP	G	A	A	rs3093765		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:108862926G>A	uc001vqn.2	-	2	964	c.691C>T	c.(691-693)CCT>TCT	p.P231S	LIG4_uc001vqo.2_Missense_Mutation_p.P231S|LIG4_uc010agg.1_Missense_Mutation_p.P164S|LIG4_uc010agf.2_Missense_Mutation_p.P231S|LIG4_uc001vqp.2_Missense_Mutation_p.P231S	NM_002312	NP_002303	P49917	DNLI4_HUMAN	DNA ligase IV	231					cell cycle|cell division|cell proliferation|central nervous system development|chromosome organization|DNA ligation involved in DNA recombination|DNA ligation involved in DNA repair|DNA replication|double-strand break repair via nonhomologous end joining|in utero embryonic development|initiation of viral infection|isotype switching|negative regulation of neuron apoptosis|neuron apoptosis|nucleotide-excision repair, DNA gap filling|positive regulation of fibroblast proliferation|positive regulation of neurogenesis|pro-B cell differentiation|provirus integration|response to gamma radiation|response to X-ray|single strand break repair|somatic stem cell maintenance|T cell differentiation in thymus|T cell receptor V(D)J recombination	condensed chromosome|cytoplasm|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|focal adhesion|nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding|protein C-terminus binding				0	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					CCTACAGAAGGATCATGCAGT	0.363								NHEJ					23	22					0	0	0.002780	0	0
MYO16	23026	broad.mit.edu	37	13	109672187	109672187	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:109672187G>A	uc001vqt.1	+	23	2784	c.2658G>A	c.(2656-2658)ATG>ATA	p.M886I	MYO16_uc010agk.1_Missense_Mutation_p.M908I|MYO16_uc001vqu.1_Missense_Mutation_p.M686I|MYO16_uc010tjh.1_Missense_Mutation_p.M398I	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	886	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			ACTCCCCCATGAAGGATGGGA	0.433													26	47					0	0	0.006320	0	0
MYO16	23026	broad.mit.edu	37	13	109707898	109707898	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:109707898G>A	uc001vqt.1	+	27	3350	c.3224G>A	c.(3223-3225)CGA>CAA	p.R1075Q	MYO16_uc010agk.1_Missense_Mutation_p.R1097Q|MYO16_uc001vqu.1_Missense_Mutation_p.R875Q|MYO16_uc010tjh.1_Missense_Mutation_p.R587Q	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1075	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			AAGATCTTCCGATATGGATAC	0.438													73	75					0	0	0.003610	0	0
COL4A1	1282	broad.mit.edu	37	13	110850904	110850904	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:110850904G>A	uc001vqw.3	-	21	1317	c.1195C>T	c.(1195-1197)CCT>TCT	p.P399S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	399	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GATGTACCAGGAAATCCTCGG	0.607													31	31					0	0	0.002836	0	0
CARKD	55739	broad.mit.edu	37	13	111277558	111277558	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:111277558T>C	uc001vrb.2	+	4	333	c.319T>C	c.(319-321)TTC>CTC	p.F107L	CARKD_uc010tji.1_Intron|CARKD_uc010tjj.1_Missense_Mutation_p.F89L|CARKD_uc001vqz.2_RNA|CARKD_uc001vra.2_Intron|CARKD_uc010tjk.1_Intron|CARKD_uc010tjl.1_Intron|CARKD_uc001vrc.2_Missense_Mutation_p.F107L			Q8IW45	CARKD_HUMAN	RecName: Full=Carbohydrate kinase domain-containing protein; Flags: Precursor;	107	YjeF C-terminal.									skin(1)	1						GTCCCACGTGTTCTGTGCCAG	0.642													16	25					0	0	0.006122	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111768020	111768020	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr13:111768020C>T	uc001vrs.2	+	1	397	c.147C>T	c.(145-147)CTC>CTT	p.L49L	ARHGEF7_uc001vrr.2_Silent_p.L49L|ARHGEF7_uc001vrt.2_Silent_p.L49L	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	49	CH.				apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			AGCGCCTGCTCCCCGGGACCA	0.473													6	8					0	0	0.001168	0	0
POTEG	404785	broad.mit.edu	37	14	19553590	19553590	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:19553590G>A	uc001vuz.1	+	1	226	c.174G>A	c.(172-174)AGG>AGA	p.R58R	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	58										ovary(1)	1						AGACACTCAGGAGCAAGATGG	0.612													75	473					0	0	0.003610	0	0
POTEG	404785	broad.mit.edu	37	14	19573107	19573107	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:19573107C>T	uc001vuz.1	+	8	1257	c.1205C>T	c.(1204-1206)TCT>TTT	p.S402F	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	402										ovary(1)	1						CAGGAAATGTCTCAAGAACCA	0.289													13	132					0	0	0.001882	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215761	20215761	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:20215761C>T	uc010tkt.1	+	1	175	c.175C>T	c.(175-177)CCT>TCT	p.P59S		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTCCAATCTCCTATGTATTA	0.408													71	137					0	0	0.003610	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216380	20216380	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:20216380G>A	uc010tkt.1	+	1	794	c.794G>A	c.(793-795)AGC>AAC	p.S265N		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCTTTCTGCAGCTTCTCTGTG	0.453													57	134					0	0	0.003610	0	0
OR4K5	79317	broad.mit.edu	37	14	20388892	20388892	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:20388892C>T	uc010tkw.1	+	1	127	c.127C>T	c.(127-129)CTT>TTT	p.L43F		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTGGGAAATCTTCTCATTAT	0.403													44	108					0	0	0.003610	0	0
OR4N5	390437	broad.mit.edu	37	14	20611898	20611898	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:20611898G>A	uc010tla.1	+	1	4	c.4G>A	c.(4-6)GAA>AAA	p.E2K		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		AGAAATTATGGAAACACAGAA	0.368													39	44					0	0	0.007835	0	0
OR11G2	390439	broad.mit.edu	37	14	20665809	20665809	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:20665809C>T	uc010tlb.1	+	1	315	c.315C>T	c.(313-315)TCC>TCT	p.S105S		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	105	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		CCAACTTCTCCTTCTTGGAGA	0.532													34	24					0	0	0.004289	0	0
RNASE8	122665	broad.mit.edu	37	14	21526300	21526300	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:21526300G>T	uc010tlm.1	+	1	249	c.249G>T	c.(247-249)CAG>CAT	p.Q83H	NDRG2_uc010tll.1_Intron	NM_138331	NP_612204	Q8TDE3	RNAS8_HUMAN	ribonuclease, RNase A family, 8 precursor	83						extracellular region	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;3.42e-11)|Epithelial(56;5.57e-09)|all cancers(55;2.36e-08)	GBM - Glioblastoma multiforme(265;0.0188)		TCACCTGCCAGACCCCCAACA	0.547													24	47					1.04121e-07	1.64635e-07	0.005443	1	0
OR10G3	26533	broad.mit.edu	37	14	22038829	22038829	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:22038829C>T	uc010tmb.1	-	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_001005465	NP_001005465	Q8NGC4	O10G3_HUMAN	olfactory receptor, family 10, subfamily G,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;0.000987)			GBM - Glioblastoma multiforme(265;0.0139)		ATACGGAATTCCTGTCAGGAT	0.398													18	18					0	0	0.008871	0	0
OR10G2	26534	broad.mit.edu	37	14	22102815	22102815	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:22102815G>A	uc010tmc.1	-	1	184	c.184C>T	c.(184-186)CGC>TGC	p.R62C		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		TACATGGGGCGAGCACAGAGC	0.512													34	21					0	0	0.003755	0	0
MMP14	4323	broad.mit.edu	37	14	23313662	23313662	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:23313662C>G	uc001whc.2	+	7	1328	c.1094C>G	c.(1093-1095)CCT>CGT	p.P365R		NM_004995	NP_004986	P50281	MMP14_HUMAN	matrix metalloproteinase 14 preproprotein	365	Hemopexin-like 1.|Extracellular (Potential).					extracellular matrix|integral to plasma membrane|melanosome	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0	all_cancers(95;9.47e-05)			GBM - Glioblastoma multiforme(265;0.00551)		CGGGGCCTGCCTGCGTCCATC	0.557													63	87					0	0	0.003610	0	0
SLC7A8	23428	broad.mit.edu	37	14	23634518	23634518	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:23634518G>A	uc001wiz.2	-	3	1210	c.484C>T	c.(484-486)CGG>TGG	p.R162W	SLC7A8_uc010akj.2_Missense_Mutation_p.R162W	NM_012244	NP_036376	Q9UHI5	LAT2_HUMAN	solute carrier family 7 (cationic amino acid	162	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|leukocyte migration|metal ion homeostasis|response to toxin	basolateral plasma membrane|cytoplasm|integral to plasma membrane	neutral amino acid transmembrane transporter activity|organic cation transmembrane transporter activity|peptide antigen binding|protein binding|toxin transporter activity			ovary(1)	1	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.00809)	L-Alanine(DB00160)|L-Glutamine(DB00130)|L-Phenylalanine(DB00120)	GCCAGGAGCCGAAGGCCAGAC	0.478													11	17					0	0	0.000978	0	0
MYH6	4624	broad.mit.edu	37	14	23870036	23870036	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:23870036G>T	uc001wjv.2	-	13	1359	c.1292C>A	c.(1291-1293)GCA>GAA	p.A431E	MYH6_uc010akp.1_Missense_Mutation_p.A431E	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	431	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CTCATACACTGCCTTGGCCAG	0.582													39	50					2.66277e-13	4.22395e-13	0.006999	1	0
RNF31	55072	broad.mit.edu	37	14	24620500	24620500	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:24620500C>T	uc001wmn.1	+	9	1898	c.1649C>T	c.(1648-1650)TCC>TTC	p.S550F	RNF31_uc001wml.1_Missense_Mutation_p.S399F|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Intron|RNF31_uc001wmo.1_Missense_Mutation_p.S17F|RNF31_uc001wmp.2_RNA	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	550					CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		GGTGCCTTTTCCTGTCAGGAG	0.607													22	20					0	0	0.002780	0	0
HEATR5A	25938	broad.mit.edu	37	14	31762523	31762523	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:31762523G>A	uc001wrf.3	-	30	5327	c.5250C>T	c.(5248-5250)ACC>ACT	p.T1750T	HEATR5A_uc010ami.2_Silent_p.T1573T	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	2037							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		AGAGGAAACTGGTCTTTAATT	0.353													46	50					0	0	0.003610	0	0
ARHGAP5	394	broad.mit.edu	37	14	32560773	32560773	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:32560773C>T	uc001wrl.2	+	2	1137	c.898C>T	c.(898-900)CAT>TAT	p.H300Y	ARHGAP5_uc001wrm.2_Missense_Mutation_p.H300Y|ARHGAP5_uc001wrn.2_Missense_Mutation_p.H300Y|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	300	FF 1.				cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		ATTAAAAAATCATCCTGATTA	0.313													49	87					0	0	0.003610	0	0
LRFN5	145581	broad.mit.edu	37	14	42356124	42356124	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:42356124G>A	uc001wvm.2	+	3	1494	c.296G>A	c.(295-297)CGA>CAA	p.R99Q	LRFN5_uc010ana.2_Missense_Mutation_p.R99Q	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	99	Extracellular (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		GCTGACCTACGAAATTTGAGG	0.358										HNSCC(30;0.082)			39	29					0	0	0.005524	0	0
FSCB	84075	broad.mit.edu	37	14	44974330	44974330	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:44974330C>T	uc001wvn.2	-	1	2170	c.1861G>A	c.(1861-1863)GAA>AAA	p.E621K		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	621	Ala-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		GGCTGAACTTCAGCGGGGGCC	0.622													15	14					0	0	0.010504	0	0
FANCM	57697	broad.mit.edu	37	14	45633577	45633577	+	Missense_Mutation	SNP	C	T	T	rs146151355		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:45633577C>T	uc001wwd.3	+	10	1696	c.1597C>T	c.(1597-1599)CGT>TGT	p.R533C	FANCM_uc001wwc.2_Missense_Mutation_p.R533C|FANCM_uc010anf.2_Missense_Mutation_p.R507C|FANCM_uc001wwe.3_Intron	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	533	Helicase C-terminal.				DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GAAACAGTTTCGTGACGGTGG	0.363								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				25	28					0	0	0.005443	0	0
MDGA2	161357	broad.mit.edu	37	14	47311177	47311177	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:47311177A>T	uc001wwj.3	-	17	3024	c.2828T>A	c.(2827-2829)TTT>TAT	p.F943Y	MDGA2_uc001wwh.3_Missense_Mutation_p.F145Y|MDGA2_uc001wwi.3_Missense_Mutation_p.F714Y	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	943					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						GATAATGGGAAAAAGCCATAT	0.388													22	42					0	0	0.004656	0	0
MDGA2	161357	broad.mit.edu	37	14	47530677	47530677	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:47530677G>A	uc001wwj.3	-	7	1289	c.1093C>T	c.(1093-1095)CCT>TCT	p.P365S	MDGA2_uc001wwi.3_Missense_Mutation_p.P136S|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	365	Ig-like 4.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						TCCTCAGAAGGAACAGCTTCT	0.423													27	35					0	0	0.005443	0	0
ATP5S	27109	broad.mit.edu	37	14	50789412	50789412	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:50789412C>T	uc001wxw.1	+	3	1028	c.336C>T	c.(334-336)ATC>ATT	p.I112I	ATP5S_uc001wxv.2_Silent_p.I112I|ATP5S_uc001wxx.1_Silent_p.I112I|ATP5S_uc010ant.1_Silent_p.I84I	NM_001003803	NP_001003803	Q99766	ATP5S_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	112					ATP biosynthetic process	mitochondrial inner membrane|proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity			ovary(1)|skin(1)	2	all_epithelial(31;0.000636)|Breast(41;0.0102)			OV - Ovarian serous cystadenocarcinoma(311;0.0685)		ACTCTTGTATCATGAGCATTG	0.468													16	34					0	0	0.010504	0	0
MAPK1IP1L	93487	broad.mit.edu	37	14	55529629	55529629	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:55529629C>T	uc001xbq.1	+	3	476	c.312C>T	c.(310-312)GCC>GCT	p.A104A		NM_144578	NP_653179	Q8NDC0	MISSL_HUMAN	MAPK-interacting and spindle-stabilizing	104	Pro-rich.										0						CTTATCCAGCCCCAACTGTGC	0.617													19	20					0	0	0.006122	0	0
OTX2	5015	broad.mit.edu	37	14	57268564	57268564	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:57268564G>A	uc001xcp.2	-	3	930	c.759C>T	c.(757-759)ACC>ACT	p.T253T	OTX2_uc010aou.2_Silent_p.T253T|OTX2_uc001xcq.2_Silent_p.T261T	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	253					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					AGCAATCAGTGGTTGAGTTAA	0.468													28	31					0	0	0.008361	0	0
SYNE2	23224	broad.mit.edu	37	14	64636996	64636996	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:64636996C>T	uc001xgm.2	+	94	17281	c.17051C>T	c.(17050-17052)GCT>GTT	p.A5684V	SYNE2_uc001xgl.2_Missense_Mutation_p.A5684V|SYNE2_uc010apy.2_Missense_Mutation_p.A2069V|SYNE2_uc001xgn.2_Missense_Mutation_p.A646V|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_5'UTR|SYNE2_uc001xgq.2_Missense_Mutation_p.A49V	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5684	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TGGCAGAATGCTGTCCAGGGT	0.463													42	63					0	0	0.003610	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65209875	65209875	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:65209875C>T	uc001xho.1	+	17	3383	c.3114C>T	c.(3112-3114)CCC>CCT	p.P1038P	PLEKHG3_uc001xhn.1_Silent_p.P982P|PLEKHG3_uc001xhp.2_Silent_p.P1159P|PLEKHG3_uc010aqh.1_Silent_p.P580P|PLEKHG3_uc001xhq.1_Silent_p.P543P	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	1038					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		CCCGGAGCCCCCTCAGCCCCA	0.622													43	52					0	0	0.003610	0	0
SMOC1	64093	broad.mit.edu	37	14	70459159	70459159	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:70459159G>A	uc001xls.1	+	6	805	c.552G>A	c.(550-552)ACG>ACA	p.T184T	SMOC1_uc001xlt.1_Silent_p.T184T	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	184					cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		CGACACCCACGATGGAGACCC	0.438													24	33					0	0	0.007291	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713174	70713174	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:70713174C>T	uc010ttg.1	-	1	1345	c.694G>A	c.(694-696)GAA>AAA	p.E232K		NR_003951				SubName: Full=ADAM21-like protein;												0						ATAAAGATTTCCCCCAATCTT	0.458													38	36					0	0	0.006999	0	0
DPF3	8110	broad.mit.edu	37	14	73198523	73198523	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:73198523C>T	uc001xnc.2	-	4	434	c.421G>A	c.(421-423)GAA>AAA	p.E141K	DPF3_uc001xnf.2_RNA|DPF3_uc010ari.1_Missense_Mutation_p.E141K|DPF3_uc010ttq.1_Missense_Mutation_p.E151K	NM_012074	NP_036206	Q92784	DPF3_HUMAN	D4, zinc and double PHD fingers, family 3	141					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex	nucleic acid binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00649)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		ACCTGTATTTCCTGGATGCTT	0.592													9	4					0	0	0.008291	0	0
VSX2	338917	broad.mit.edu	37	14	74707911	74707911	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:74707911C>T	uc001xpq.2	+	2	487	c.397C>T	c.(397-399)CGA>TGA	p.R133*		NM_182894	NP_878314	P58304	VSX2_HUMAN	visual system homeobox 2	133	Ser/Thr-rich.				multicellular organismal development|response to stimulus|visual perception	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00154)		CTCCAGCGATCGAAAAATGTC	0.597													23	32					0	0	0.003954	0	0
C14orf115	55237	broad.mit.edu	37	14	74825517	74825517	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:74825517C>T	uc001xpw.3	+	2	2222	c.2031C>T	c.(2029-2031)CTC>CTT	p.L677L		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	677					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TCAGTGCCCTCTTTCCCCTCA	0.562													24	29					0	0	0.007291	0	0
LTBP2	4053	broad.mit.edu	37	14	74975335	74975335	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:74975335G>A	uc001xqa.2	-	24	4011	c.3624C>T	c.(3622-3624)GTC>GTT	p.V1208V		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1208	Cys-rich.|EGF-like 12; calcium-binding (Potential).				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CCTCTGCGCTGACGAAGCCAG	0.627													12	19					0	0	0.001368	0	0
TSHR	7253	broad.mit.edu	37	14	81422135	81422135	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:81422135C>T	uc001xvd.1	+	1	267	c.111C>T	c.(109-111)TTC>TTT	p.F37F	C14orf145_uc001xva.1_Intron|TSHR_uc001xvb.1_Silent_p.F37F|TSHR_uc001xvc.2_Silent_p.F37F|TSHR_uc010tvs.1_Silent_p.F37F	NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	37	Extracellular (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	AGGAGGACTTCAGAGTCACCT	0.602			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						60	57					0	0	0.003610	0	0
FLRT2	23768	broad.mit.edu	37	14	86088753	86088753	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:86088753C>T	uc001xvr.2	+	2	1662	c.895C>T	c.(895-897)CTC>TTC	p.L299F	FLRT2_uc010atd.2_Missense_Mutation_p.L299F	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	299	Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TTTTGATAATCTCTCCAACCT	0.453													94	120					0	0	0.003610	0	0
FLRT2	23768	broad.mit.edu	37	14	86088939	86088939	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:86088939C>T	uc001xvr.2	+	2	1848	c.1081C>T	c.(1081-1083)CCC>TCC	p.P361S	FLRT2_uc010atd.2_Missense_Mutation_p.P361S	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	361	Extracellular (Potential).|LRRCT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TTTGTCCTGTCCCACCACGAC	0.557													66	57					0	0	0.003610	0	0
CATSPERB	79820	broad.mit.edu	37	14	92076898	92076898	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:92076898A>C	uc001xzs.1	-	21	2664	c.2524T>G	c.(2524-2526)TTT>GTT	p.F842V	CATSPERB_uc010aub.1_Missense_Mutation_p.F364V	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	842					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AATGGGATAAATTTGCTAGGA	0.378													25	42					0	0	0.003954	0	0
FBLN5	10516	broad.mit.edu	37	14	92403312	92403312	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:92403312C>T	uc001xzx.3	-	4	831	c.358G>A	c.(358-360)GAT>AAT	p.D120N	FBLN5_uc010aud.2_Missense_Mutation_p.D125N|FBLN5_uc010aue.2_Missense_Mutation_p.D161N	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	120					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				TTGCTTTCATCCATCTGGTAT	0.507													47	49					0	0	0.003610	0	0
KIAA1409	57578	broad.mit.edu	37	14	94007029	94007029	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:94007029A>G	uc001ybv.1	+	10	928	c.845A>G	c.(844-846)CAT>CGT	p.H282R	KIAA1409_uc001ybs.1_Missense_Mutation_p.H282R|KIAA1409_uc001ybu.1_Missense_Mutation_p.H220R	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	459						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GCCGAGTTCCATGCTGAGCAG	0.488													34	35					0	0	0.006999	0	0
KIAA1409	57578	broad.mit.edu	37	14	94048633	94048633	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:94048633C>T	uc001ybv.1	+	17	2298	c.2215C>T	c.(2215-2217)CCT>TCT	p.P739S	KIAA1409_uc001ybs.1_Missense_Mutation_p.P739S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	916						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GGAGGAGAATCCTGCAAGCAA	0.572													11	24					0	0	0.000978	0	0
KIAA1409	57578	broad.mit.edu	37	14	94053106	94053106	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:94053106G>A	uc001ybv.1	+	19	2436	c.2353G>A	c.(2353-2355)GAA>AAA	p.E785K	KIAA1409_uc001ybs.1_Missense_Mutation_p.E785K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	962						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TTTTGTATAGGAAATGGCTAA	0.343													27	42					0	0	0.008361	0	0
PPP4R4	57718	broad.mit.edu	37	14	94708700	94708700	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:94708700C>T	uc001ycs.1	+	11	1375	c.1221C>T	c.(1219-1221)GAC>GAT	p.D407D		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	407	HEAT 3.					cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TTTGCCATGACCCTGAAGTAC	0.388													68	66					0	0	0.003610	0	0
SERPINA10	51156	broad.mit.edu	37	14	94752588	94752588	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:94752588C>T	uc001yct.2	-	4	1466	c.1000G>A	c.(1000-1002)GAA>AAA	p.E334K	SERPINA10_uc001ycu.3_Missense_Mutation_p.E334K	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	334					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		AAGAAAACTTCCATGTTTCTG	0.398													18	29					0	0	0.001882	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912826	94912826	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:94912826G>A	uc001ydd.1	-	3	819	c.759C>T	c.(757-759)TTC>TTT	p.F253F		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	253					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		GGTCATAGAGGAATCTGTGCA	0.517													51	50					0	0	0.003610	0	0
SERPINA11	256394	broad.mit.edu	37	14	94914515	94914515	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:94914515G>A	uc001ydd.1	-	2	657	c.597C>T	c.(595-597)TTC>TTT	p.F199F		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	199					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		TGTCCTGGCTGAACTCCGGGA	0.463													54	63					0	0	0.003610	0	0
SERPINA4	5267	broad.mit.edu	37	14	95033575	95033575	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:95033575G>A	uc001ydk.2	+	3	984	c.918G>A	c.(916-918)CGG>CGA	p.R306R	SERPINA4_uc010avd.2_Silent_p.R343R|SERPINA4_uc001ydl.2_Silent_p.R306R	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	306					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		ACTTGTTGCGGAAGAGGTAAT	0.438													15	20					0	0	0.004007	0	0
SERPINA3	12	broad.mit.edu	37	14	95080886	95080886	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:95080886G>A	uc001ydp.2	+	2	187	c.108G>A	c.(106-108)CAG>CAA	p.Q36Q	SERPINA3_uc001ydo.3_Silent_p.Q61Q|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Silent_p.Q36Q|SERPINA3_uc001yds.2_Silent_p.Q36Q|SERPINA3_uc010avg.2_Silent_p.Q36Q	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	36					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		ATCTGACCCAGGAGAACCAAG	0.592													32	62					0	0	0.008740	0	0
AK7	122481	broad.mit.edu	37	14	96953373	96953373	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:96953373G>A	uc001yfn.2	+	17	2157	c.2113G>A	c.(2113-2115)GAA>AAA	p.E705K		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	705	DPY-30.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CGTCCGACCCGAAGACCCTGT	0.299													31	32					0	0	0.004289	0	0
PAPOLA	10914	broad.mit.edu	37	14	96991699	96991699	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:96991699G>A	uc001yfq.2	+	4	512	c.302G>A	c.(301-303)GGA>GAA	p.G101E	PAPOLA_uc001yfo.2_Missense_Mutation_p.G101E|PAPOLA_uc001yfp.2_Missense_Mutation_p.G101E|PAPOLA_uc001yfr.2_Missense_Mutation_p.G101E|PAPOLA_uc010twv.1_Missense_Mutation_p.G101E|PAPOLA_uc010avp.2_5'UTR	NM_032632	NP_116021	P51003	PAPOA_HUMAN	poly(A) polymerase alpha	101	ATP (By similarity).				mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|RNA binding				0		all_cancers(154;0.0555)|all_epithelial(191;0.149)|Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.213)		TTTACATTTGGATCTTACAGA	0.328													5	72					0	0	0.000602	0	0
EML1	2009	broad.mit.edu	37	14	100364580	100364580	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:100364580C>T	uc001ygs.2	+	8	907	c.838C>T	c.(838-840)CAT>TAT	p.H280Y	EML1_uc010avt.1_Missense_Mutation_p.H267Y|EML1_uc010tww.1_Missense_Mutation_p.H268Y|EML1_uc001ygq.2_Missense_Mutation_p.H299Y|EML1_uc001ygr.2_Missense_Mutation_p.H299Y	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	280	WD 1.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				CCTAGCAGTTCATCCTGATCG	0.363													8	12					0	0	0.008291	0	0
DEGS2	123099	broad.mit.edu	37	14	100615377	100615377	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:100615377C>T	uc001ygx.2	-	2	841	c.753G>A	c.(751-753)TGG>TGA	p.W251*		NM_206918	NP_996801	Q6QHC5	DEGS2_HUMAN	degenerative spermatocyte homolog 2, lipid	251					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	sphingosine hydroxylase activity				0		Melanoma(154;0.212)				TGAAGGTGATCCAGTTGAGAG	0.632													42	40					0	0	0.003610	0	0
C14orf68	283600	broad.mit.edu	37	14	100795310	100795311	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:100795310_100795311CC>TT	uc001yhc.2	+	5	648_649	c.575_576CC>TT	c.(574-576)TCC>TTT	p.S192F	C14orf68_uc001yhd.2_Missense_Mutation_p.S46F	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	192	Solcar 2.|Helical; Name=4; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				GACGGCCACTCCTTTGCCACCT	0.693													35	32					0	0	0.004672	0	0
WDR25	79446	broad.mit.edu	37	14	100995455	100995455	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:100995455C>T	uc010avx.2	+	6	1416	c.1323C>T	c.(1321-1323)TTC>TTT	p.F441F	WDR25_uc001yhm.2_Silent_p.F433F|WDR25_uc001yhn.2_Silent_p.F441F|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_Silent_p.F184F	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	441	WD 5.										0		Melanoma(154;0.212)				AGCCCGTGTTCCTGGCACAGA	0.597													11	17					0	0	0.001368	0	0
MIR487B	664616	broad.mit.edu	37	14	101512859	101512859	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:101512859C>T	hsa-mir-487b|MI0003530	+			c.68C>T			MIR539_hsa-mir-539|MI0003514_5'Flank|MIR889_hsa-mir-889|MI0005540_5'Flank|MIR544_hsa-mir-544|MI0003515_5'Flank																	0						CAGGGTCATCCACTTTTTCAG	0.264													20	27					0	0	0.001882	0	0
MIR496	574454	broad.mit.edu	37	14	101526930	101526930	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:101526930G>A	hsa-mir-496|MI0003136	+			c.21G>A			uc010awh.1_5'Flank|MIR377_hsa-mir-377|MI0000785_5'Flank																	0						GTACTCGAATGGAGGTTGTCC	0.517													5	12					0	0	0.001984	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102452703	102452703	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:102452703C>T	uc001yks.2	+	8	2305	c.2141C>T	c.(2140-2142)TCG>TTG	p.S714L		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	714	Interaction with DYNC1LI2 (By similarity).|Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CTCGGTGTCTCGGGGCGCATT	0.512													27	17					0	0	0.007291	0	0
MARK3	4140	broad.mit.edu	37	14	103918266	103918266	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:103918266G>A	uc001ymz.3	+	5	1024	c.358G>A	c.(358-360)GAA>AAA	p.E120K	MARK3_uc001ymx.3_Missense_Mutation_p.E120K|MARK3_uc001ymw.3_Missense_Mutation_p.E120K|MARK3_uc001yna.3_Missense_Mutation_p.E120K|MARK3_uc001ymy.3_Missense_Mutation_p.E120K|MARK3_uc010awp.2_Missense_Mutation_p.E120K	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	120	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			GAAGTTATTCGAAGTCATTGA	0.353													78	101					0	0	0.003610	0	0
AHNAK2	113146	broad.mit.edu	37	14	105415687	105415687	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:105415687G>A	uc010axc.1	-	7	6221	c.6101C>T	c.(6100-6102)ACT>ATT	p.T2034I	AHNAK2_uc001ypx.2_Missense_Mutation_p.T1934I	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2034						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCTGAGGTCAGTGGTCTTCAG	0.667													67	37					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106092377	106092377	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:106092377G>A	uc010tyt.1	-	3645		c.61641C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GCGCCAGGGGGAAGACCGATG	0.672													7	9					0	0	0.003080	0	0
ADAM6	8755	broad.mit.edu	37	14	106236259	106236259	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:106236259C>T	uc010tyt.1	-	3616		c.57685G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						TCCGGGAAATCATAAGGGTAT	0.592													30	40					0	0	0.007291	0	0
ADAM6	8755	broad.mit.edu	37	14	106321778	106321778	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:106321778C>T	uc010tyt.1	-	3599		c.55618G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CCACCTGCTTCCCCTCGCGCA	0.642													13	17					0	0	0.001855	0	0
ADAM6	8755	broad.mit.edu	37	14	106321789	106321789	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:106321789G>A	uc010tyt.1	-	3599		c.55607C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CCCTCGCGCAGCCAGGACACC	0.652													12	15					0	0	0.001368	0	0
ADAM6	8755	broad.mit.edu	37	14	106494244	106494244	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:106494244G>A	uc010tyt.1	-	1760		c.34754C>T								Parts of antibodies, mostly variable regions.												0						GCTCTTCAGAGATGGGCTGTA	0.527													28	45					0	0	0.006320	0	0
ADAM6	8755	broad.mit.edu	37	14	106725137	106725137	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:106725137C>T	uc010tyt.1	-	589		c.18377G>A								Parts of antibodies, mostly variable regions.												0						CCGCTGATTTCCCCCCCATCG	0.587													26	45					0	0	0.003330	0	0
ADAM6	8755	broad.mit.edu	37	14	106733361	106733361	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:106733361C>T	uc010tyt.1	-	547		c.17375G>A								Parts of antibodies, mostly variable regions.												0						GAGGGTGTATCCGGAAACCTT	0.562													67	81					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106877891	106877891	+	RNA	SNP	G	A	A	rs149688840	by1000genomes	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:106877891G>A	uc010tyt.1	-	277		c.11208C>T			uc010tyu.1_Missense_Mutation_p.P21S					Parts of antibodies, mostly variable regions.												0						ACCAGTCCTGGGCCCGACTCC	0.602													24	23					0	0	0.003954	0	0
ADAM6	8755	broad.mit.edu	37	14	106926618	106926618	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:106926618G>A	uc010tyt.1	-	234		c.10040C>T			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						TAGCAACAAGGAAAACCCAGC	0.473													53	104					0	0	0.003610	0	0
OR4M2	390538	broad.mit.edu	37	15	22369074	22369074	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:22369074C>T	uc010tzu.1	+	1	499	c.499C>T	c.(499-501)CCT>TCT	p.P167S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGTTCGACTTCCTTTCTGTGG	0.493													76	134					0	0	0.003610	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413812	22413812	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:22413812G>A	uc001yuf.2	+	1	111	c.111G>A	c.(109-111)GTG>GTA	p.V37V		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TCCTTGTTGTGATGGCCTTTG	0.493													33	84					0	0	0.005524	0	0
C15orf2	23742	broad.mit.edu	37	15	24923385	24923385	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:24923385G>A	uc001ywo.2	+	1	2845	c.2371G>A	c.(2371-2373)GAT>AAT	p.D791N		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	791					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CAGTGCCCATGATTTCCTGAG	0.537													69	77					0	0	0.003610	0	0
RYR3	6263	broad.mit.edu	37	15	33822854	33822854	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:33822854C>T	uc001zhi.2	+	4	411	c.341C>T	c.(340-342)TCT>TTT	p.S114F	RYR3_uc010bar.2_Missense_Mutation_p.S114F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	114	Cytoplasmic (By similarity).|MIR 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTGAGGCACTCTTTCAGCGGA	0.512													11	18					0	0	0.002450	0	0
RYR3	6263	broad.mit.edu	37	15	33925186	33925186	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:33925186G>A	uc001zhi.2	+	24	2974	c.2904G>A	c.(2902-2904)TTG>TTA	p.L968L	RYR3_uc010bar.2_Silent_p.L968L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	968	2.|4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CAGCCCCTTTGGATTTGTCTG	0.368													53	59					0	0	0.003610	0	0
SLC12A6	9990	broad.mit.edu	37	15	34536215	34536215	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:34536215G>A	uc001zhw.2	-	15	2166	c.2002C>T	c.(2002-2004)CGA>TGA	p.R668*	SLC12A6_uc001zhv.2_Nonsense_Mutation_p.R617*|SLC12A6_uc001zhx.2_Nonsense_Mutation_p.R653*|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Nonsense_Mutation_p.R609*|SLC12A6_uc001zib.2_Nonsense_Mutation_p.R659*|SLC12A6_uc001zic.2_Nonsense_Mutation_p.R668*|SLC12A6_uc010bau.2_Nonsense_Mutation_p.R668*|SLC12A6_uc001zid.2_Nonsense_Mutation_p.R609*|SLC12A6_uc001zht.2_RNA|SLC12A6_uc001zhu.2_Nonsense_Mutation_p.R480*	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	668	Cytoplasmic (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	TTGGGTGTTCGAAGTAATGTT	0.393													53	49					0	0	0.003610	0	0
AQR	9716	broad.mit.edu	37	15	35185944	35185944	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:35185944C>T	uc001ziv.2	-	23	2672	c.2491G>A	c.(2491-2493)GAT>AAT	p.D831N		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	831						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		ACTGCCACATCTGTTTTGCCT	0.383													49	117					0	0	0.003610	0	0
CSNK1A1P	161635	broad.mit.edu	37	15	37110049	37110049	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:37110049C>T	uc001zjg.3	-	1		c.659G>A				NR_027320				Homo sapiens casein kinase 1, alpha 1 pseudogene, mRNA (cDNA clone IMAGE:5166482).												0						AATTGGTCTTCGAGGCTAGGT	0.408													9	13					0	0	0.004482	0	0
VPS18	57617	broad.mit.edu	37	15	41192240	41192240	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:41192240C>T	uc001zne.2	+	4	1563	c.1224C>T	c.(1222-1224)TTC>TTT	p.F408F		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	408					endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		TGAACCGCTTCGATCTGGCCA	0.632													53	51					0	0	0.003610	0	0
HAUS2	55142	broad.mit.edu	37	15	42858950	42858950	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:42858950A>G	uc001zqe.2	+	6	704	c.644A>G	c.(643-645)GAT>GGT	p.D215G	HAUS2_uc010udi.1_Missense_Mutation_p.D184G|HAUS2_uc001zqf.2_Missense_Mutation_p.D121G	NM_018097	NP_060567	Q9NVX0	HAUS2_HUMAN	centrosomal protein 27kDa isoform 1	215					cell division|centrosome organization|G2/M transition of mitotic cell cycle|mitosis|spindle assembly	centrosome|cytosol|HAUS complex|microtubule|spindle					0						TATAAACATGATATTATAATG	0.318													20	19					0	0	0.008871	0	0
DUOX2	50506	broad.mit.edu	37	15	45387155	45387155	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:45387155G>A	uc010bea.2	-	32	4577	c.4374C>T	c.(4372-4374)TTC>TTT	p.F1458F	DUOX2_uc001zun.2_Silent_p.F1458F	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1458	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TCCTGAGGTCGAACTTCTCAG	0.587													26	28					0	0	0.009535	0	0
DUOXA2	405753	broad.mit.edu	37	15	45408347	45408347	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:45408347C>T	uc001zuo.2	+	3	511	c.231C>T	c.(229-231)TTC>TTT	p.F77F	DUOX2_uc010bea.2_5'Flank|DUOX2_uc001zun.2_5'Flank|DUOXA2_uc010beb.2_RNA	NM_207581	NP_997464	Q1HG44	DOXA2_HUMAN	dual oxidase activator 2	77	Helical; (Potential).				protein transport	endoplasmic reticulum membrane|integral to membrane					0		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;2.88e-18)|GBM - Glioblastoma multiforme(94;3.95e-07)|COAD - Colon adenocarcinoma(120;0.0652)|Colorectal(133;0.0659)		CAGAATGGTTCGTGGGTACAG	0.552													62	65					0	0	0.003610	0	0
DUOX1	53905	broad.mit.edu	37	15	45433598	45433598	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:45433598C>T	uc001zus.1	+	15	2020	c.1674C>T	c.(1672-1674)GTC>GTT	p.V558V	DUOX1_uc001zut.1_Silent_p.V558V|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	558	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		ATGTCTTTGTCTGGCATAAAG	0.552													20	44					0	0	0.004656	0	0
SLC28A2	9153	broad.mit.edu	37	15	45554216	45554216	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:45554216G>A	uc001zva.2	+	4	239	c.174G>A	c.(172-174)AGG>AGA	p.R58R		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	58					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		TTATTAGGAGGAGTCGGTGGC	0.403													48	84					0	0	0.003610	0	0
SLC28A2	9153	broad.mit.edu	37	15	45554282	45554282	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:45554282C>T	uc001zva.2	+	4	305	c.240C>T	c.(238-240)ATC>ATT	p.I80I		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	80	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		TCAAGAAGATCCTGTTGGGCC	0.408													50	77					0	0	0.003610	0	0
SLC28A2	9153	broad.mit.edu	37	15	45559899	45559899	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:45559899G>A	uc001zva.2	+	12	1169	c.1104G>A	c.(1102-1104)ATG>ATA	p.M368I		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	368	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		CCTCTGTGATGGCCGCCCCTT	0.552													52	62					0	0	0.003610	0	0
SHC4	399694	broad.mit.edu	37	15	49254922	49254922	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:49254922G>A	uc001zxb.1	-	1	720	c.291C>T	c.(289-291)AAC>AAT	p.N97N		NM_203349	NP_976224	Q6S5L8	SHC4_HUMAN	rai-like protein	97	CH2.				intracellular signal transduction	cell junction|postsynaptic membrane				ovary(3)|pancreas(2)	5		all_lung(180;0.00466)		all cancers(107;9.4e-08)|GBM - Glioblastoma multiforme(94;5.94e-07)		AAGTGGCCGGGTTGGCCAGCT	0.617													38	44					0	0	0.006999	0	0
DMXL2	23312	broad.mit.edu	37	15	51791142	51791142	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:51791142G>A	uc002abf.2	-	18	4504	c.4279C>T	c.(4279-4281)CCT>TCT	p.P1427S	DMXL2_uc010ufy.1_Missense_Mutation_p.P1427S|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1427						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		GGTAGTGGAGGGATAGAATCT	0.398													62	67					0	0	0.003610	0	0
UNC13C	440279	broad.mit.edu	37	15	54586243	54586243	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:54586243G>A	uc002ack.2	+	9	3969	c.3969G>A	c.(3967-3969)ATG>ATA	p.M1323I	UNC13C_uc002acl.2_Missense_Mutation_p.M153I	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1323					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GTGGAGAAATGGATGTCTGGT	0.343													90	117					0	0	0.003610	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58306061	58306061	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:58306061G>A	uc002aex.2	-	3	416	c.358C>T	c.(358-360)CTT>TTT	p.L120F	ALDH1A2_uc002aey.2_Missense_Mutation_p.L120F|ALDH1A2_uc010ugv.1_Missense_Mutation_p.L99F|ALDH1A2_uc010ugw.1_Missense_Mutation_p.L91F|ALDH1A2_uc002aew.2_Missense_Mutation_p.L24F	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	120					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	CTTACTGCAAGAACTGCCCTG	0.403													146	171					0	0	0.003610	0	0
LIPC	3990	broad.mit.edu	37	15	58855711	58855711	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:58855711G>A	uc010bga.1	+	10	1785	c.1177G>A	c.(1177-1179)GGA>AGA	p.G393R	LIPC_uc010bfz.1_Missense_Mutation_p.G393R|LIPC_uc002afa.1_Missense_Mutation_p.G393R|LIPC_uc010bgb.1_Missense_Mutation_p.G291R|LIPC_uc010ugy.1_Missense_Mutation_p.G332R	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	393	PLAT.				cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		AAGGGGCAAAGGAATTGCTAG	0.418													14	18					0	0	0.004007	0	0
CSNK1G1	53944	broad.mit.edu	37	15	64506176	64506176	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:64506176C>T	uc002anf.2	-	6	1072	c.592G>A	c.(592-594)GAA>AAA	p.E198K	CSNK1G1_uc002ane.2_RNA|CSNK1G1_uc002ang.1_Missense_Mutation_p.E198K|CSNK1G1_uc002anh.1_Missense_Mutation_p.E198K|CSNK1G1_uc002anj.2_Missense_Mutation_p.E180K	NM_022048	NP_071331	Q9HCP0	KC1G1_HUMAN	casein kinase 1, gamma 1	198	Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity				0						TTTTTGGTTTCGGGGTCAATG	0.393													74	81					0	0	0.003610	0	0
DPP8	54878	broad.mit.edu	37	15	65772729	65772729	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:65772729G>A	uc002aov.2	-	10	2753	c.1175C>T	c.(1174-1176)TCC>TTC	p.S392F	DPP8_uc002aow.2_Missense_Mutation_p.S392F|DPP8_uc010uiv.1_RNA|DPP8_uc002aox.2_Missense_Mutation_p.S376F|DPP8_uc002aoy.2_Missense_Mutation_p.S392F|DPP8_uc002aoz.2_Missense_Mutation_p.S376F|DPP8_uc010bhj.2_Missense_Mutation_p.S392F|DPP8_uc002apa.2_Missense_Mutation_p.S289F|DPP8_uc010bhk.1_Intron	NM_130434	NP_569118	Q6V1X1	DPP8_HUMAN	dipeptidyl peptidase 8 isoform 1	392					immune response|proteolysis	cytoplasm|membrane|nucleus	aminopeptidase activity|dipeptidyl-peptidase activity|serine-type peptidase activity			ovary(1)	1						TAGTAGGATGGACCAAGCACT	0.373													10	18					0	0	0.006214	0	0
MAP2K5	5607	broad.mit.edu	37	15	68040913	68040913	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:68040913C>T	uc002aqu.2	+	19	1761	c.1108C>T	c.(1108-1110)CAG>TAG	p.Q370*	MAP2K5_uc002aqv.2_Nonsense_Mutation_p.Q360*|MAP2K5_uc002aqw.2_Nonsense_Mutation_p.Q210*|MAP2K5_uc002aqx.2_Nonsense_Mutation_p.Q180*	NM_145160	NP_660143	Q13163	MP2K5_HUMAN	mitogen-activated protein kinase kinase 5	370	Protein kinase.				nerve growth factor receptor signaling pathway		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)	2						GCAGCCTCTCCAGCTTCTGCA	0.373													26	35					0	0	0.007291	0	0
LBXCOR1	390598	broad.mit.edu	37	15	68125544	68125544	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:68125544G>A	uc002aqy.1	+	9	2620	c.2620G>A	c.(2620-2622)GAA>AAA	p.E874K		NM_001031807	NP_001026977	P84550	SKOR1_HUMAN	transcriptional corepressor Corl1	918	Potential.				negative regulation of BMP signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	cytoplasm|dendrite|neuronal cell body|nucleus	nucleotide binding|SMAD binding|transcription repressor activity				0						CCTGTGTAACGAACTCGACCA	0.622													18	24					0	0	0.010504	0	0
LBXCOR1	390598	broad.mit.edu	37	15	68125554	68125554	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:68125554A>C	uc002aqy.1	+	9	2630	c.2630A>C	c.(2629-2631)CAG>CCG	p.Q877P		NM_001031807	NP_001026977	P84550	SKOR1_HUMAN	transcriptional corepressor Corl1	921	Potential.				negative regulation of BMP signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	cytoplasm|dendrite|neuronal cell body|nucleus	nucleotide binding|SMAD binding|transcription repressor activity				0						GAACTCGACCAGGAGCGGAAG	0.617													16	28					0	0	0.010504	0	0
PAQR5	54852	broad.mit.edu	37	15	69652437	69652438	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:69652437_69652438CC>TT	uc002arz.2	+	3	396_397	c.18_19CC>TT	c.(16-21)CTCCCC>CTTTCC	p.P7S	PAQR5_uc002asa.2_Missense_Mutation_p.P7S	NM_017705	NP_060175	Q9NXK6	MPRG_HUMAN	progestin and adipoQ receptor family member V	7	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane	receptor activity|steroid binding			ovary(2)	2						GCCTGAAGCTCCCCAGGCTGTT	0.55													27	37					0	0	0.004672	0	0
GRAMD2	196996	broad.mit.edu	37	15	72456035	72456035	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:72456035G>A	uc002atq.2	-	9	688	c.664C>T	c.(664-666)CCA>TCA	p.P222S	GRAMD2_uc010bis.2_Missense_Mutation_p.P222S|GRAMD2_uc010ukh.1_Missense_Mutation_p.P16S	NM_001012642	NP_001012660	Q8IUY3	GRAM2_HUMAN	GRAM domain containing 2	222						integral to membrane					0						ATGTTGTCTGGGAGAGACAGG	0.537													14	20					0	0	0.003163	0	0
HCN4	10021	broad.mit.edu	37	15	73635981	73635981	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:73635981G>A	uc002avp.2	-	2	1948	c.954C>T	c.(952-954)ATC>ATT	p.I318I		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	318	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		CCTCCACCACGATCCCTGTGC	0.493													14	15					0	0	0.002450	0	0
CD276	80381	broad.mit.edu	37	15	73994903	73994903	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:73994903C>T	uc002avv.1	+	3	621	c.387C>T	c.(385-387)TTC>TTT	p.F129F	CD276_uc010bjd.1_5'UTR|CD276_uc002avu.1_Silent_p.F129F|CD276_uc002avw.1_Silent_p.F129F|CD276_uc010ulb.1_Silent_p.F75F|CD276_uc002avx.2_5'Flank	NM_001024736	NP_001019907	Q5ZPR3	CD276_HUMAN	CD276 antigen isoform a	129	Ig-like V-type 1.|Extracellular (Potential).				cell proliferation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of T cell proliferation|regulation of immune response|T cell activation	external side of plasma membrane|integral to membrane	receptor binding			skin(1)	1						TCCGGGATTTCGGCAGCGCTG	0.682													9	13					0	0	0.003163	0	0
UBL7	84993	broad.mit.edu	37	15	74741678	74741678	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:74741678G>A	uc002axw.1	-	9	893	c.731C>T	c.(730-732)CCC>CTC	p.P244L	UBL7_uc002axx.1_Missense_Mutation_p.P284L|UBL7_uc010bjr.1_Missense_Mutation_p.P135L|UBL7_uc002axy.1_Missense_Mutation_p.P244L|UBL7_uc002axz.1_Missense_Mutation_p.P244L	NM_032907	NP_116296	Q96S82	UBL7_HUMAN	ubiquitin-like 7	244							protein binding			ovary(1)	1						ACTGCTAGAGGGTGTGGACCT	0.597													8	10					0	0	0.004482	0	0
CSPG4	1464	broad.mit.edu	37	15	75977729	75977730	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:75977729_75977730GG>AA	uc002baw.2	-	4	4195_4196	c.4102_4103CC>TT	c.(4102-4104)CCT>TTT	p.P1368F		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1368	CSPG 9.|Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).|Interaction with COL5A1 (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GCCACCCTCAGGGACGCTGAAG	0.683													5	7					0	0	0.004672	0	0
SGK269	79834	broad.mit.edu	37	15	77425774	77425774	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:77425774G>A	uc002bcm.2	-	5	3958	c.3650C>T	c.(3649-3651)TCC>TTC	p.S1217F		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1217					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		CCTTTCCAAGGAGTCATAAGA	0.483													28	32					0	0	0.004656	0	0
HMG20A	10363	broad.mit.edu	37	15	77763375	77763375	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:77763375C>T	uc002bcr.2	+	6	775	c.574C>T	c.(574-576)CAT>TAT	p.H192Y	HMG20A_uc002bcs.2_Missense_Mutation_p.H192Y	NM_018200	NP_060670	Q9NP66	HM20A_HUMAN	high-mobility group 20A	192					chromatin modification	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						AGGCAAATCTCATAGGCAAGG	0.408													37	34					0	0	0.002852	0	0
PSMA4	5685	broad.mit.edu	37	15	78837985	78837986	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:78837985_78837986CC>TT	uc002bdu.3	+	7	544_545	c.386_387CC>TT	c.(385-387)CCC>CTT	p.P129L	PSMA4_uc010blf.2_Missense_Mutation_p.P129L|PSMA4_uc002bdv.3_Missense_Mutation_p.P58L|PSMA4_uc002bdw.3_Missense_Mutation_p.P105L|PSMA4_uc002bdx.3_Missense_Mutation_p.P58L	NM_002789	NP_002780	P25789	PSA4_HUMAN	proteasome alpha 4 subunit isoform 1	129					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	identical protein binding|threonine-type endopeptidase activity				0						GGAAAACGTCCCTTTGGTGTTT	0.406													57	107					0	0	0.004672	0	0
CHRNA5	1138	broad.mit.edu	37	15	78873233	78873233	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:78873233C>T	uc002bdy.2	+	2	349	c.187C>T	c.(187-189)CGT>TGT	p.R63C	CHRNA5_uc002bdz.2_Missense_Mutation_p.R63C	NM_000745	NP_000736	P30532	ACHA5_HUMAN	cholinergic receptor, nicotinic, alpha 5	63	Extracellular (Potential).				behavioral response to nicotine	cell junction|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AAGATGGGTTCGTCCTGTGGA	0.328													29	28					0	0	0.007291	0	0
TMC3	342125	broad.mit.edu	37	15	81654585	81654585	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:81654585C>T	uc002bgo.1	-	4	370	c.370G>A	c.(370-372)GAA>AAA	p.E124K	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.E124K	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	124	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						ATCCTCATTTCCCAGGGAATG	0.483													7	6					0	0	0.001984	0	0
BNC1	646	broad.mit.edu	37	15	83933330	83933330	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:83933330C>T	uc002bjt.1	-	4	761	c.673G>A	c.(673-675)GGA>AGA	p.G225R	BNC1_uc010uos.1_Missense_Mutation_p.G213R	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	225					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CTGGGGTTTCCTTTGTCCACA	0.493													29	41					0	0	0.008361	0	0
ALPK3	57538	broad.mit.edu	37	15	85383851	85383851	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:85383851G>A	uc002ble.2	+	5	2114	c.1947G>A	c.(1945-1947)AAG>AAA	p.K649K		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	649					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGAGTCCCAAGGGGAAGGCAC	0.647													16	15					0	0	0.003163	0	0
ACAN	176	broad.mit.edu	37	15	89388938	89388938	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:89388938C>T	uc010upo.1	+	7	1628	c.1254C>T	c.(1252-1254)TTC>TTT	p.F418F	ACAN_uc002bmx.2_Silent_p.F418F|ACAN_uc010upp.1_Silent_p.F418F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	418					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AGGAGCCCTTCACGTTTGCCC	0.617													8	11					0	0	0.004482	0	0
C15orf58	390637	broad.mit.edu	37	15	90785030	90785030	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:90785030C>G	uc002bpc.2	+	4	1069	c.890C>G	c.(889-891)CCG>CGG	p.P297R		NM_001013657	NP_001013679	Q6ZNW5	VTC2_HUMAN	hypothetical protein LOC390637	297					glucose metabolic process	cytoplasm	GDP-D-glucose phosphorylase activity				0						GGAGCTCCGCCGGGAAAGACA	0.527													28	37					0	0	0.005443	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92706011	92706011	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:92706011C>T	uc002bqx.2	+	10	1980	c.1779C>T	c.(1777-1779)TTC>TTT	p.F593F	SLCO3A1_uc002bqy.2_Silent_p.F593F|SLCO3A1_uc002bqz.1_Silent_p.F535F	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	593	Helical; Name=11; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			CCCTCATCTTCGGGGCTGGCA	0.567													33	30					0	0	0.003755	0	0
MCTP2	55784	broad.mit.edu	37	15	94910902	94910902	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:94910902G>C	uc002btj.2	+	10	1435	c.1370G>C	c.(1369-1371)TGT>TCT	p.C457S	MCTP2_uc002bti.2_Missense_Mutation_p.C457S|MCTP2_uc010boj.2_Missense_Mutation_p.C186S|MCTP2_uc010bok.2_Missense_Mutation_p.C457S|MCTP2_uc002btk.3_Missense_Mutation_p.C45S|MCTP2_uc002btl.2_Missense_Mutation_p.C45S	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	457					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CTGGACAGCTGTCTGGGGGCT	0.527													9	84					0	0	0.006214	0	0
FAM169B	283777	broad.mit.edu	37	15	98995172	98995172	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr15:98995172C>T	uc002buk.1	-	5	502	c.252G>A	c.(250-252)AGG>AGA	p.R84R		NM_182562	NP_872368	Q8N8A8	F169B_HUMAN	hypothetical protein LOC283777	84											0						AGTGTTTCCTCCTGATGAACA	0.577													13	16					0	0	0.004007	0	0
BAIAP3	8938	broad.mit.edu	37	16	1391445	1391445	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:1391445T>G	uc002clk.1	+	8	791	c.791T>G	c.(790-792)GTG>GGG	p.V264G	BAIAP3_uc002clj.2_Missense_Mutation_p.V246G|BAIAP3_uc010uuz.1_Missense_Mutation_p.V229G|BAIAP3_uc010uva.1_Missense_Mutation_p.V201G|BAIAP3_uc010uvb.1_Missense_Mutation_p.V281G|BAIAP3_uc010uvc.1_Missense_Mutation_p.V229G	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	264	C2 1.				G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				GTCACCGAGGTGAAGAGCAGC	0.682													30	44					0	0	0.004289	0	0
IFT140	9742	broad.mit.edu	37	16	1573573	1573573	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:1573573G>A	uc002cmb.2	-	26	3761	c.3399C>T	c.(3397-3399)TTC>TTT	p.F1133F	IFT140_uc002clz.2_Silent_p.F746F	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	1133	TPR 7.									ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TGTGCTCGATGAAGAAGTCGG	0.652													14	13					0	0	0.003163	0	0
PKD1	5310	broad.mit.edu	37	16	2161784	2161784	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:2161784G>A	uc002cos.1	-	15	3593	c.3384C>T	c.(3382-3384)TCC>TCT	p.S1128S	PKD1_uc002cot.1_Silent_p.S1128S	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1128	PKD 5.|PKD 6.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CCACAGCCACGGAGGGCAGGG	0.672													6	8					0	0	0.001168	0	0
MLST8	64223	broad.mit.edu	37	16	2258787	2258788	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:2258787_2258788GG>AA	uc002coz.2	+	9	1009_1010	c.890_891GG>AA	c.(889-891)TGG>TAA	p.W297*	MLST8_uc002cpa.2_Nonsense_Mutation_p.W113*|MLST8_uc002cpb.2_Nonsense_Mutation_p.W296*|MLST8_uc010uvx.1_Nonsense_Mutation_p.W231*|MLST8_uc002cpc.2_Nonsense_Mutation_p.W297*|MLST8_uc002cpd.2_Nonsense_Mutation_p.W231*|MLST8_uc002cpe.2_Nonsense_Mutation_p.W297*|MLST8_uc002cpg.2_Nonsense_Mutation_p.W316*|MLST8_uc002cph.2_RNA|MLST8_uc002cpf.2_Nonsense_Mutation_p.W297*	NM_022372	NP_071767	Q9BVC4	LST8_HUMAN	G protein beta subunit-like	297	WD 7.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|T cell costimulation	cytosol	protein binding				0						GCCCGGCTCTGGTGTGTGGAGA	0.624													82	86					0	0	0.004672	0	0
KCTD5	54442	broad.mit.edu	37	16	2732687	2732687	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:2732687C>T	uc002crd.2	+	1	193	c.138C>T	c.(136-138)GTC>GTT	p.V46V		NM_018992	NP_061865	Q9NXV2	KCTD5_HUMAN	potassium channel tetramerisation domain	46	BTB.				interspecies interaction between organisms	cytosol|nucleus|voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity				0						CCAAGTGGGTCCGACTCAACG	0.577													15	16					0	0	0.004007	0	0
THOC6	79228	broad.mit.edu	37	16	3077227	3077227	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:3077227C>T	uc002ctb.2	+	11	1052	c.756C>T	c.(754-756)ACC>ACT	p.T252T	HCFC1R1_uc002csx.1_5'Flank|HCFC1R1_uc002csy.1_5'Flank|HCFC1R1_uc002csz.1_5'Flank|THOC6_uc002ctd.2_Silent_p.T252T|THOC6_uc002ctc.2_Silent_p.T228T|THOC6_uc002cta.2_Silent_p.T228T	NM_024339	NP_077315	Q86W42	THOC6_HUMAN	WD repeat domain 58 isoform 1	252	WD 5.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	RNA binding			ovary(1)|central_nervous_system(1)	2						CCACACCCACCACCATCTTCC	0.637													26	34					0	0	0.005443	0	0
CCDC64B	146439	broad.mit.edu	37	16	3079381	3079381	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:3079381G>A	uc002ctf.3	-	6	1052	c.1007C>T	c.(1006-1008)CCC>CTC	p.P336L	CCDC64B_uc002cte.3_Missense_Mutation_p.P129L	NM_001103175	NP_001096645	A1A5D9	BICR2_HUMAN	coiled-coil domain containing 64B	336											0						CTCTTCCGGGGGTGAAGGCTG	0.577													3	8					0	0	0.009096	0	0
IL32	9235	broad.mit.edu	37	16	3117463	3117463	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:3117463C>T	uc002cto.2	+	3	312	c.101C>T	c.(100-102)TCA>TTA	p.S34L	IL32_uc002ctk.2_Intron|IL32_uc010uwp.1_Intron|IL32_uc010btb.2_Intron|IL32_uc002ctl.2_Intron|IL32_uc002ctm.2_Intron|IL32_uc002ctn.2_Intron|IL32_uc010btc.1_Missense_Mutation_p.S34L|IL32_uc002cts.3_Intron|IL32_uc002ctp.2_Intron|IL32_uc010uwq.1_Missense_Mutation_p.S34L|IL32_uc002ctq.2_Missense_Mutation_p.S34L|IL32_uc002ctr.2_Intron|IL32_uc002ctt.2_Intron|IL32_uc010uwr.1_Intron|IL32_uc002ctu.2_Intron	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	34					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						GCCTGGGTCTCAGCGTGTGAC	0.592													36	45					0	0	0.004289	0	0
OR2C1	4993	broad.mit.edu	37	16	3406010	3406010	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:3406010G>A	uc002cuw.1	+	1	122	c.70G>A	c.(70-72)GAG>AAG	p.E24K		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCCCAGCTGGAGATGATCTT	0.498													42	39					0	0	0.002522	0	0
NLRC3	197358	broad.mit.edu	37	16	3602201	3602201	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:3602201C>T	uc010btn.2	-	11	2757	c.2346G>A	c.(2344-2346)GAG>GAA	p.E782E	NLRC3_uc010bto.1_Silent_p.E47E	NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	782	LRR 7.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CTCACATGAGCTCTTTCAGAC	0.353													14	26					0	0	0.003163	0	0
BTBD12	84464	broad.mit.edu	37	16	3639402	3639402	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:3639402G>A	uc002cvp.2	-	12	4864	c.4237C>T	c.(4237-4239)CCC>TCC	p.P1413S		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1413	Interaction with MUS81.|Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						TCCAGTGGGGGGCTTCTGTTG	0.607								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				39	46					0	0	0.006999	0	0
BTBD12	84464	broad.mit.edu	37	16	3640116	3640116	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:3640116G>A	uc002cvp.2	-	12	4150	c.3523C>T	c.(3523-3525)CCT>TCT	p.P1175S		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1175	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						TCTTCCAGAGGATCACTAGAA	0.453								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				41	66					0	0	0.003610	0	0
BTBD12	84464	broad.mit.edu	37	16	3652243	3652243	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:3652243A>G	uc002cvp.2	-	4	1453	c.826T>C	c.(826-828)TTT>CTT	p.F276L	BTBD12_uc002cvq.1_Missense_Mutation_p.F276L	NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	276	Interaction with C20orf94, ERCC4 and MSH2.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						ACCCGTGCAAACTCCTGCTGC	0.547								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				43	57					0	0	0.003214	0	0
ADCY9	115	broad.mit.edu	37	16	4164547	4164547	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:4164547G>A	uc002cvx.2	-	2	1436	c.897C>T	c.(895-897)TTC>TTT	p.F299F		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	299	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						GGGACATGACGAACAGGTGGA	0.632													29	20					0	0	0.007291	0	0
SRL	6345	broad.mit.edu	37	16	4253226	4253226	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:4253226G>A	uc002cvz.3	-	3	213	c.200C>T	c.(199-201)TCC>TTC	p.S67F	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	526						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						AGGCTTGATGGATGAGTGGTA	0.567													29	44					0	0	0.002445	0	0
SEC14L5	9717	broad.mit.edu	37	16	5053432	5053432	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:5053432G>A	uc002cye.2	+	11	1340	c.1160G>A	c.(1159-1161)GGA>GAA	p.G387E		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	387	CRAL-TRIO.					integral to membrane|intracellular	transporter activity				0						GACCTGGAGGGACTCAACATG	0.642													29	32					0	0	0.003755	0	0
USP7	7874	broad.mit.edu	37	16	8996278	8996278	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:8996278C>T	uc002czl.2	-	17	2100	c.1901G>A	c.(1900-1902)CGA>CAA	p.R634Q	USP7_uc010uyk.1_Missense_Mutation_p.R535Q|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.R535Q|USP7_uc002czk.2_Missense_Mutation_p.R618Q|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	634	Interaction with ICP0/VMW110.				interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						CATTGCTGGTCGTTTTGTTCC	0.383													20	26					0	0	0.006320	0	0
TEKT5	146279	broad.mit.edu	37	16	10729726	10729726	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:10729726C>T	uc002czz.1	-	6	1208	c.1136G>A	c.(1135-1137)AGG>AAG	p.R379K		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	379	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						CATGATGGACCTTTCCAGCAG	0.637													68	82					0	0	0.003610	0	0
CP110	9738	broad.mit.edu	37	16	19548169	19548169	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:19548169C>T	uc002dgl.3	+	4	1425	c.1178C>T	c.(1177-1179)CCA>CTA	p.P393L	CP110_uc002dgk.3_Missense_Mutation_p.P393L			O43303	CP110_HUMAN	RecName: Full=Centrosomal protein of 110 kDa;          Short=Cep110;	393	Interaction with CEP76.				centriole replication|G2/M transition of mitotic cell cycle|regulation of cytokinesis	centriole|cytosol	protein binding				0						ATAAATAACCCAATAAATGCC	0.383													13	16					0	0	0.002450	0	0
UMOD	7369	broad.mit.edu	37	16	20360449	20360449	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:20360449G>A	uc002dgz.2	-	3	303	c.174C>T	c.(172-174)GGC>GGT	p.G58G	UMOD_uc002dha.2_Silent_p.G58G|UMOD_uc002dhb.2_Silent_p.G91G	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	58	EGF-like 1.				cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						TCAGGCCATCGCCGGTGAAGC	0.597													8	10					0	0	0.004482	0	0
TNRC6A	27327	broad.mit.edu	37	16	24801035	24801035	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:24801035C>T	uc002dmm.2	+	6	1186	c.1072C>T	c.(1072-1074)CCA>TCA	p.P358S	TNRC6A_uc010bxs.2_Missense_Mutation_p.P105S|TNRC6A_uc010vcc.1_Missense_Mutation_p.P105S|TNRC6A_uc002dmn.2_Missense_Mutation_p.P105S|TNRC6A_uc002dmo.2_Missense_Mutation_p.P105S	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	358	Ser-rich.|Sufficient for interaction with EIF2C1, EIF2C3 and EIF2C4.|Sufficient for interaction with EIF2C2.|Sufficient for interaction with EIF2C2.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		AGGGTTAAATCCAAGCACTTT	0.453													36	64					0	0	0.008740	0	0
ITGAL	3683	broad.mit.edu	37	16	30515547	30515547	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:30515547C>T	uc002dyi.3	+	18	2373	c.2197C>T	c.(2197-2199)CTT>TTT	p.L733F	ITGAL_uc002dyj.3_Missense_Mutation_p.L650F|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	733	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GAATTTCTCTCTTTGGGAGGA	0.473													25	49					0	0	0.009535	0	0
ZNF768	79724	broad.mit.edu	37	16	30536828	30536829	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:30536828_30536829GG>AA	uc002dyk.3	-	2	808_809	c.632_633CC>TT	c.(631-633)CCC>CTT	p.P211L	ZNF768_uc010vex.1_Missense_Mutation_p.P180L|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Missense_Mutation_p.P180L	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	211					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						GTGGCCCTATGGGCAGGTCCCC	0.584													29	50					0	0	0.004672	0	0
SRCAP	10847	broad.mit.edu	37	16	30736020	30736020	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:30736020C>T	uc002dze.1	+	25	5660	c.5275C>T	c.(5275-5277)CCA>TCA	p.P1759S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P1554S|SRCAP_uc010bzz.1_Missense_Mutation_p.P1329S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1759	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TCCAGCTTCTCCAGTGGGccc	0.333													20	20					0	0	0.010504	0	0
SETD1A	9739	broad.mit.edu	37	16	30976205	30976205	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:30976205C>T	uc002ead.1	+	7	1828	c.1142C>T	c.(1141-1143)TCC>TTC	p.S381F		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	381					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						CGCCATACTTCCTACCCACCA	0.473													76	120					0	0	0.003610	0	0
ITGAX	3687	broad.mit.edu	37	16	31374287	31374287	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:31374287C>T	uc002ebu.1	+	13	1458	c.1391C>T	c.(1390-1392)TCC>TTC	p.S464F	ITGAX_uc002ebt.2_Missense_Mutation_p.S464F|ITGAX_uc010vfk.1_Missense_Mutation_p.S114F	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	464	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TCCCTCTGCTCCGTGGACGTA	0.667													28	44					0	0	0.003271	0	0
ITGAX	3687	broad.mit.edu	37	16	31391891	31391891	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:31391891C>T	uc002ebu.1	+	28	3289	c.3222C>T	c.(3220-3222)TTC>TTT	p.F1074F	ITGAX_uc002ebt.2_Silent_p.F1074F	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	1074	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AAATTACGTTCGACACATCCG	0.562													32	30					0	0	0.003214	0	0
DNAJA2	10294	broad.mit.edu	37	16	46991110	46991110	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:46991110G>A	uc002eeo.2	-	9	1212	c.1070C>T	c.(1069-1071)TCT>TTT	p.S357F	DNAJA2_uc002eep.2_Missense_Mutation_p.S274F	NM_005880	NP_005871	O60884	DNJA2_HUMAN	DnaJ subfamily A member 2	357					positive regulation of cell proliferation|protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			lung(1)	1		all_cancers(37;0.00125)|all_lung(18;0.00338)|all_epithelial(9;0.00358)|Lung NSC(13;0.0309)|Breast(268;0.116)				TTCCGGTCTAGATGGCAGAAG	0.413													110	114					0	0	0.003610	0	0
ABCC12	94160	broad.mit.edu	37	16	48167670	48167670	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:48167670G>A	uc002efc.1	-	7	1402	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Silent_p.I352I|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	352	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TGGTGGACACGATGGGGGCCA	0.502													20	35					0	0	0.007413	0	0
ZNF423	23090	broad.mit.edu	37	16	49669970	49669970	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:49669970G>A	uc002efs.2	-	5	3391	c.3093C>T	c.(3091-3093)TCC>TCT	p.S1031S	ZNF423_uc010vgn.1_Silent_p.S914S	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	1031	C2H2-type 24.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				GCTCAAGCGTGGAAGTGACTG	0.597													9	15					0	0	0.006214	0	0
ZNF423	23090	broad.mit.edu	37	16	49672585	49672585	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:49672585G>A	uc002efs.2	-	5	776	c.478C>T	c.(478-480)CAC>TAC	p.H160Y	ZNF423_uc010vgn.1_Missense_Mutation_p.H43Y	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	160	C2H2-type 2.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TTGTCGCTGTGGATCTGCTCG	0.597													22	27					0	0	0.003330	0	0
SALL1	6299	broad.mit.edu	37	16	51171368	51171368	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:51171368G>A	uc010vgs.1	-	3	3661	c.3630C>T	c.(3628-3630)CCC>CCT	p.P1210P	SALL1_uc010vgr.1_Silent_p.P1113P|SALL1_uc010cbv.2_Silent_p.P62P	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1210					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GGAACTTGACGGGATTGCCTC	0.557													28	28					0	0	0.009535	0	0
SALL1	6299	broad.mit.edu	37	16	51172696	51172696	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:51172696G>A	uc010vgs.1	-	2	3468	c.3437C>T	c.(3436-3438)TCG>TTG	p.S1146L	SALL1_uc010vgr.1_Missense_Mutation_p.S1049L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1146	Poly-Ser.|C2H2-type 8.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CAGGGCACTCGATGAGGAGAA	0.507													9	13					0	0	0.000978	0	0
AMFR	267	broad.mit.edu	37	16	56423199	56423200	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:56423199_56423200CC>TT	uc002eiy.2	-	9	1378_1379	c.1173_1174GG>AA	c.(1171-1176)AGGGAA>AGAAAA	p.E392K	AMFR_uc002eix.2_Intron	NM_001144	NP_001135	Q9UKV5	AMFR2_HUMAN	autocrine motility factor receptor	392					endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|protein oligomerization|protein polyubiquitination	integral to endoplasmic reticulum membrane|integral to membrane of membrane fraction	protein binding|protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			breast(2)	2						TGATGTTCTTCCCTGACACGAT	0.455													36	49					0	0	0.004672	0	0
NUDT21	11051	broad.mit.edu	37	16	56485055	56485055	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:56485055G>A	uc002eja.2	-	1	207	c.60C>T	c.(58-60)TTC>TTT	p.F20F	OGFOD1_uc002ejb.2_5'Flank|OGFOD1_uc002ejc.2_5'Flank	NM_007006	NP_008937	O43809	CPSF5_HUMAN	cleavage and polyadenylation specific factor 5	20	Necessary for RNA-binding.				mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	centrosome|mRNA cleavage factor complex|paraspeckles	AU-rich element binding|histone deacetylase binding|hydrolase activity|mRNA binding|protein homodimerization activity				0						ACTTGTTGCCGAACTGAGTGA	0.642													40	51					0	0	0.003610	0	0
CCDC135	84229	broad.mit.edu	37	16	57755588	57755588	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:57755588G>A	uc002emi.2	+	9	1305	c.1216G>A	c.(1216-1218)GAT>AAT	p.D406N	CCDC135_uc002emj.2_Missense_Mutation_p.D406N|CCDC135_uc002emk.2_Missense_Mutation_p.D341N	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	406						cytoplasm				central_nervous_system(1)	1						GGGCAAGGAGGATGAGGATAA	0.532													22	32					0	0	0.008361	0	0
PRSS54	221191	broad.mit.edu	37	16	58314339	58314339	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:58314339C>T	uc002enf.2	-	7	1372	c.977G>A	c.(976-978)GGA>GAA	p.G326E	PRSS54_uc002eng.2_Missense_Mutation_p.G326E|PRSS54_uc010vie.1_Missense_Mutation_p.G227E|CCDC113_uc002ene.2_3'UTR|CCDC113_uc010vid.1_3'UTR	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	326					proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						AGAGCTGTTTCCTAGTCGTGA	0.448													26	41					0	0	0.005443	0	0
RRAD	6236	broad.mit.edu	37	16	66956003	66956004	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:66956003_66956004GG>AA	uc002eqn.2	-	5	1054_1055	c.902_903CC>TT	c.(901-903)TCC>TTT	p.S301F	RRAD_uc002eqo.2_Missense_Mutation_p.S301F	NM_001128850	NP_001122322	P55042	RAD_HUMAN	Ras-related associated with diabetes	301					small GTPase mediated signal transduction	plasma membrane	calmodulin binding|GTP binding|GTPase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0862)|Epithelial(162;0.198)		GGTCGTGGCAGGACTTGGATTT	0.634													9	10					0	0	0.004672	0	0
SLC9A5	6553	broad.mit.edu	37	16	67289375	67289375	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:67289375G>A	uc002esm.2	+	4	796	c.733_splice	c.e4+1	p.A245_splice	SLC9A5_uc010cee.2_5'UTR|SLC9A5_uc010vji.1_Splice_Site	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen						regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		AAGGGAGTCGGTCAGTATTTC	0.592													23	22					0	0	0.002780	0	0
KCTD19	146212	broad.mit.edu	37	16	67327786	67327786	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:67327786G>A	uc002esu.2	-	12	1930	c.1879C>T	c.(1879-1881)CCT>TCT	p.P627S	KCTD19_uc002est.2_Missense_Mutation_p.P399S|KCTD19_uc010vjj.1_Missense_Mutation_p.P370S	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	627						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		GTGGCGGGAGGGTCTTTGGTT	0.527													65	54					0	0	0.003610	0	0
KCTD19	146212	broad.mit.edu	37	16	67327805	67327805	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:67327805C>T	uc002esu.2	-	12	1911	c.1860G>A	c.(1858-1860)CAG>CAA	p.Q620Q	KCTD19_uc002est.2_Silent_p.Q392Q|KCTD19_uc010vjj.1_Silent_p.Q363Q	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	620						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		TTTCAGATTTCTGTGTGAGGT	0.522													46	74					0	0	0.009718	0	0
HSD11B2	3291	broad.mit.edu	37	16	67470517	67470517	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:67470517G>A	uc002etd.2	+	5	945	c.829G>A	c.(829-831)GAA>AAA	p.E277K		NM_000196	NP_000187	P80365	DHI2_HUMAN	hydroxysteroid (11-beta) dehydrogenase 2	277					glucocorticoid biosynthetic process	endoplasmic reticulum|microsome					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0401)|Epithelial(162;0.0891)	NADH(DB00157)	GGGTCAGTGGGAAAAGCGCAA	0.567													17	19					0	0	0.006122	0	0
DPEP3	64180	broad.mit.edu	37	16	68011631	68011631	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:68011631C>T	uc002evc.3	-	6	1027	c.933G>A	c.(931-933)GTG>GTA	p.V311V	DPEP3_uc010cex.2_Silent_p.V311V	NM_022357	NP_071752	Q9H4B8	DPEP3_HUMAN	dipeptidase 3 isoform a	286					meiosis	anchored to membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			breast(3)	3		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0117)|Epithelial(162;0.0481)|all cancers(182;0.236)		GGGAGAAGATCACAGGAGCCT	0.498													11	9					0	0	0.001368	0	0
VAC14	55697	broad.mit.edu	37	16	70820255	70820255	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:70820255A>G	uc002ezm.2	-	2	376	c.118T>C	c.(118-120)TTC>CTC	p.F40L	VAC14_uc010cfw.2_Intron|VAC14_uc002ezn.2_5'UTR	NM_018052	NP_060522	Q08AM6	VAC14_HUMAN	Vac14 homolog	40	HEAT 1.				interspecies interaction between organisms	endoplasmic reticulum|endosome membrane|microsome	protein binding|receptor activity			pancreas(1)|skin(1)	2		Ovarian(137;0.0699)				TGGGCCACGAACTCCCGGACC	0.617													24	30					0	0	0.005443	0	0
HYDIN	54768	broad.mit.edu	37	16	71163558	71163558	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:71163558G>A	uc002ezr.2	-	9	1340	c.1212C>T	c.(1210-1212)TTC>TTT	p.F404F	HYDIN_uc010cfz.1_Silent_p.F149F|HYDIN_uc002ezv.2_Silent_p.F404F|HYDIN_uc010vmc.1_Silent_p.F421F|HYDIN_uc010vmd.1_Silent_p.F431F|HYDIN_uc002ezw.3_Silent_p.F421F	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	404										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCTCCACAGTGAAAACGTTAT	0.473													7	16					0	0	0.001984	0	0
PMFBP1	83449	broad.mit.edu	37	16	72170606	72170606	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:72170606C>T	uc002fcc.3	-	8	1203	c.1031G>A	c.(1030-1032)AGA>AAA	p.R344K	PMFBP1_uc002fcd.2_Missense_Mutation_p.R344K|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.R199K	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	344	Potential.									ovary(2)	2		Ovarian(137;0.179)				CATGATGTTTCTCTTCTGTTC	0.567													16	8					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	16	74419270	74419270	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:74419270C>T	uc010vmt.1	+	2	98	c.97C>T	c.(97-99)CGA>TGA	p.R33*						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		CTTCTGGTCTCGAAATGGACA	0.363													32	228					0	0	0.003610	0	0
MLKL	197259	broad.mit.edu	37	16	74729212	74729212	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:74729212G>A	uc002fdb.2	-	2	885	c.444C>T	c.(442-444)TTC>TTT	p.F148F	MLKL_uc002fdc.2_Silent_p.F148F	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	148							ATP binding|protein binding|protein kinase activity			stomach(2)	2						TTAGCATCTGGAAAGCTCGCC	0.498													40	46					0	0	0.007835	0	0
PKD1L2	114780	broad.mit.edu	37	16	81180978	81180978	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:81180978C>T	uc002fgh.1	-	30	5113	c.5113G>A	c.(5113-5115)GGG>AGG	p.G1705R	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1705	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AACACCTGCCCTGATGTGTTC	0.522													80	62					0	0	0.003610	0	0
BCMO1	53630	broad.mit.edu	37	16	81279168	81279168	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:81279168C>T	uc002fgn.1	+	2	371	c.153C>T	c.(151-153)TTC>TTT	p.F51F	BCMO1_uc002fgm.1_Silent_p.F51F|BCMO1_uc010vnp.1_Nonsense_Mutation_p.R26*	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	51					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						ACCATTGGTTCGACGGCCTTG	0.448													38	48					0	0	0.009718	0	0
CDH13	1012	broad.mit.edu	37	16	83251023	83251023	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:83251023G>A	uc002fgx.2	+	5	677	c.557G>A	c.(556-558)GGA>GAA	p.G186E	CDH13_uc010vns.1_Missense_Mutation_p.G233E|CDH13_uc010vnt.1_5'UTR|CDH13_uc010vnu.1_Missense_Mutation_p.G147E	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	186	Cadherin 1.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GAGCCTAAAGGAATTTTCAGA	0.478													24	32					0	0	0.003330	0	0
ADAD2	161931	broad.mit.edu	37	16	84229435	84229435	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:84229435C>T	uc002fhr.2	+	7	1181	c.1067C>T	c.(1066-1068)TCG>TTG	p.S356L	ADAD2_uc002fhq.2_Missense_Mutation_p.S438L|uc002fhs.1_Intron	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	356	A to I editase.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						CCCCCCACCTCGGAAGGTGGC	0.706													12	10					0	0	0.007413	0	0
ADAD2	161931	broad.mit.edu	37	16	84230263	84230263	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:84230263G>A	uc002fhr.2	+	9	1651	c.1537G>A	c.(1537-1539)GGG>AGG	p.G513R	ADAD2_uc002fhq.2_Missense_Mutation_p.G595R|uc002fhs.1_Intron	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	513	A to I editase.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						TGCCGCCCTGGGGCCTCCCTC	0.607													62	69					0	0	0.003610	0	0
ZDHHC7	55625	broad.mit.edu	37	16	85024132	85024132	+	Silent	SNP	G	A	A	rs138250474		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:85024132G>A	uc002fiq.2	-	3	446	c.93C>T	c.(91-93)TCC>TCT	p.S31S	ZDHHC7_uc010voi.1_Silent_p.S31S|ZDHHC7_uc002fir.1_RNA	NM_017740	NP_060210	Q9NXF8	ZDHC7_HUMAN	zinc finger, DHHC-type containing 7 isoform 2	31						integral to membrane	acyltransferase activity|protein binding|zinc ion binding			large_intestine(1)	1						CGTCAGCCTCGGAGGAGGAGG	0.577													18	13					0	0	0.004990	0	0
KIAA0182	23199	broad.mit.edu	37	16	85704609	85704609	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:85704609C>T	uc002fix.2	+	15	3498	c.3424C>T	c.(3424-3426)CTG>TTG	p.L1142L	KIAA0182_uc002fiw.2_Silent_p.L1038L|KIAA0182_uc002fiy.2_Silent_p.L1069L|KIAA0182_uc002fiz.2_Silent_p.L284L|KIAA0182_uc010cho.2_Silent_p.L322L	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	1142	Potential.						protein binding			large_intestine(3)|ovary(1)|skin(1)	5						AGAGCAAAATCTGGAGCGGCA	0.582													36	40					0	0	0.004878	0	0
IRF8	3394	broad.mit.edu	37	16	85954808	85954808	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr16:85954808C>T	uc002fjh.2	+	9	1258	c.1201C>T	c.(1201-1203)CAG>TAG	p.Q401*	IRF8_uc010chp.2_RNA	NM_002163	NP_002154	Q02556	IRF8_HUMAN	interferon regulatory factor 8	401					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(2)|ovary(1)	3		Prostate(104;0.0771)				GCCGCCAGACCAGGTCTTCCG	0.572													30	28					0	0	0.007291	0	0
PRPF8	10594	broad.mit.edu	37	17	1586852	1586852	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:1586852G>T	uc002fte.2	-	3	358	c.244C>A	c.(244-246)CGC>AGC	p.R82S		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	82						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TTGTCATGGCGGAACTTCCTG	0.478													5	81					0.00307968	0.00485832	0.003080	1	0
RAP1GAP2	23108	broad.mit.edu	37	17	2868886	2868886	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:2868886C>T	uc010ckd.2	+	8	635	c.545C>T	c.(544-546)TCC>TTC	p.S182F	RAP1GAP2_uc010cke.2_Missense_Mutation_p.S167F	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	182					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						TTGATCCTGTCCGTCAAGTGC	0.527													11	8					0	0	0.002450	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2923809	2923809	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:2923809G>A	uc010ckd.2	+	19	1761	c.1671G>A	c.(1669-1671)CGG>CGA	p.R557R	RAP1GAP2_uc010cke.2_Silent_p.R542R	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	557					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						ACCAGTCACGGAGTCCCATCA	0.612													16	7					0	0	0.004007	0	0
OR1D2	4991	broad.mit.edu	37	17	2996105	2996105	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:2996105G>A	uc010vrb.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	62	Helical; Name=2; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						GGTTGGCCAGGAAGAAGTACA	0.537													53	90					0	0	0.003610	0	0
OR3A4	390756	broad.mit.edu	37	17	3213868	3213868	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:3213868C>T	uc002fvi.2	+	1	330	c.264C>T	c.(262-264)TTC>TTT	p.F88F		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						TGAGCCATTTCATATCCAACG	0.542													19	32					0	0	0.002299	0	0
SPNS3	201305	broad.mit.edu	37	17	4337383	4337383	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:4337383C>T	uc002fxt.2	+	1	165	c.121C>T	c.(121-123)CCG>TCG	p.P41S	SPNS3_uc002fxu.2_5'UTR	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	41					lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						GAGCCTGCCCCCGTGGAGGGC	0.652													34	30					0	0	0.002522	0	0
KIAA0753	9851	broad.mit.edu	37	17	6531867	6531867	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:6531867T>A	uc002gde.3	-	3	647	c.288A>T	c.(286-288)AGA>AGT	p.R96S	KIAA0753_uc010clo.2_5'UTR|KIAA0753_uc010vte.1_5'UTR	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	96						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		CATAGCTAAGTCTCTCTTGGG	0.408													25	46					0	0	0.004656	0	0
FBXO39	162517	broad.mit.edu	37	17	6683602	6683602	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:6683602C>T	uc010vtg.1	+	2	535	c.415C>T	c.(415-417)CTG>TTG	p.L139L		NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	139										ovary(1)|skin(1)	2						GCTGGACCGCCTGGTATGGAG	0.502													19	31					0	0	0.008871	0	0
TEKT1	83659	broad.mit.edu	37	17	6716195	6716195	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:6716195C>T	uc002gdt.2	-	6	917	c.807G>A	c.(805-807)AAG>AAA	p.K269K	TEKT1_uc010vth.1_Silent_p.K123K	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	269	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				CCTTTGTATCCTTCAGCCCAT	0.532													65	70					0	0	0.003610	0	0
TEKT1	83659	broad.mit.edu	37	17	6719154	6719154	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:6719154G>A	uc002gdt.2	-	4	594	c.484C>T	c.(484-486)CGG>TGG	p.R162W	TEKT1_uc010vth.1_Missense_Mutation_p.R16W	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	162	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				GAGTCATACCGAATCTGCTCG	0.532													26	17					0	0	0.008361	0	0
ALOX12	239	broad.mit.edu	37	17	6902131	6902131	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:6902131G>A	uc002gdx.3	+	4	570	c.517G>A	c.(517-519)GAC>AAC	p.D173N		NM_000697	NP_000688	P18054	LOX12_HUMAN	arachidonate 12-lipoxygenase	173	Lipoxygenase.				anti-apoptosis|cellular component movement|fatty acid oxidation|leukotriene biosynthetic process|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of cell proliferation|superoxide anion generation	cytosol|sarcolemma	arachidonate 12-lipoxygenase activity|hepoxilin-epoxide hydrolase activity|iron ion binding|lipoxygenase activity|protein binding			central_nervous_system(1)	1						GAAGAGGCTGGACTTTGAATG	0.522													12	25					0	0	0.003163	0	0
ASGR1	432	broad.mit.edu	37	17	7080604	7080604	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:7080604C>T	uc002ges.3	-	3	522	c.112G>A	c.(112-114)GGA>AGA	p.G38R	ASGR1_uc010clx.1_5'Flank	NM_001671	NP_001662	P07306	ASGR1_HUMAN	asialoglycoprotein receptor 1	38	Cytoplasmic (Probable).				receptor-mediated endocytosis	integral to plasma membrane	asialoglycoprotein receptor activity|metal ion binding|sugar binding			breast(1)|central_nervous_system(1)	2						AGGCGAGGTCCGGAGCAGAGA	0.682											OREG0024128	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	22					0	0	0.002445	0	0
KCTD11	147040	broad.mit.edu	37	17	7256709	7256709	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:7256709G>A	uc002gge.3	+	1	1502	c.448G>A	c.(448-450)GAG>AAG	p.E150K	TMEM95_uc002ggf.1_5'Flank|TMEM95_uc002ggg.1_5'Flank|TMEM95_uc002ggh.1_5'Flank	NM_001002914	NP_001002914	Q693B1	KCD11_HUMAN	potassium channel tetramerisation domain	150					cell cycle|regulation of growth	voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Prostate(122;0.157)				GGATAGGGCAGAGGGGAGCCC	0.642													26	38					0	0	0.009535	0	0
TMEM95	339168	broad.mit.edu	37	17	7259169	7259169	+	Missense_Mutation	SNP	C	T	T	rs139214770		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:7259169C>T	uc002ggh.1	+	3	266	c.239C>T	c.(238-240)GCT>GTT	p.A80V	TMEM95_uc002ggf.1_Missense_Mutation_p.A80V|TMEM95_uc002ggg.1_Missense_Mutation_p.A80V	NM_198154	NP_937797	Q3KNT9	TMM95_HUMAN	transmembrane protein 95	80	Extracellular (Potential).					integral to membrane					0		Prostate(122;0.173)				ATCAAAGAGGCTGTCTCCTCA	0.607											OREG0024137	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	31					0	0	0.001882	0	0
ZBTB4	57659	broad.mit.edu	37	17	7365821	7365821	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:7365821G>A	uc002ghc.3	-	4	2730	c.2480C>T	c.(2479-2481)TCC>TTC	p.S827F	ZBTB4_uc002ghd.3_Missense_Mutation_p.S827F	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	827					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		CTCACCGCTGGATGAGGAGAC	0.632													9	12					0	0	0.006214	0	0
ALOX15B	247	broad.mit.edu	37	17	7948223	7948223	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:7948223C>T	uc002gju.2	+	6	869	c.753C>T	c.(751-753)ATC>ATT	p.I251I	ALOX15B_uc002gjv.2_Silent_p.I251I|ALOX15B_uc002gjw.2_Silent_p.I251I|ALOX15B_uc010vun.1_Silent_p.I251I|ALOX15B_uc010cnp.2_Silent_p.I57I	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	251	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						CTGTCCTGATCCGCCGCTGTC	0.607													22	23					0	0	0.002299	0	0
ALOX12B	242	broad.mit.edu	37	17	7984452	7984452	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:7984452C>T	uc002gjy.1	-	3	667	c.406G>A	c.(406-408)GAG>AAG	p.E136K	uc010cnq.1_RNA	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	136	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GCTCTGATCTCCTCTTTTCTG	0.632										Multiple Myeloma(8;0.094)			9	23					0	0	0.001368	0	0
GAS7	8522	broad.mit.edu	37	17	9873045	9873045	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:9873045G>A	uc002gmg.1	-	4	581	c.420C>T	c.(418-420)CAC>CAT	p.H140H	GAS7_uc010vvd.1_Silent_p.H92H|GAS7_uc002gmi.2_Silent_p.H76H|GAS7_uc002gmj.1_Silent_p.H80H|GAS7_uc010coh.1_Silent_p.H80H	NM_201433	NP_958839	O60861	GAS7_HUMAN	growth arrest-specific 7 isoform c	140					cell cycle arrest	cytoplasm	sequence-specific DNA binding transcription factor activity			lung(1)|pancreas(1)	2						TCTCTGGAGGGTGCGCTGGGG	0.607			T	MLL	AML*								27	32					0	0	0.009535	0	0
MYH13	8735	broad.mit.edu	37	17	10212982	10212982	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:10212982C>T	uc002gmk.1	-	34	4912	c.4822G>A	c.(4822-4824)GAA>AAA	p.E1608K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1608	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CTGCGGATTTCAGCATCCAGC	0.557													8	13					0	0	0.003080	0	0
MYH8	4626	broad.mit.edu	37	17	10301804	10301804	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:10301804C>T	uc002gmm.2	-	30	4230	c.4135G>A	c.(4135-4137)GAG>AAG	p.E1379K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1379	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GCATCCGTCTCGTATTTGGTT	0.542									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				84	154					0	0	0.003610	0	0
MYH8	4626	broad.mit.edu	37	17	10307703	10307703	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:10307703C>T	uc002gmm.2	-	22	2727	c.2632G>A	c.(2632-2634)GAA>AAA	p.E878K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	878	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ACCATTTTTTCCTCTAGCTCC	0.433									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				23	37					0	0	0.002299	0	0
MYH4	4622	broad.mit.edu	37	17	10348156	10348156	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:10348156C>T	uc002gmn.2	-	38	5638	c.5527G>A	c.(5527-5529)GGT>AGT	p.G1843S	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1843	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTGCGAAGACCCTTGACAGCC	0.438													54	76					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10348605	10348605	+	Silent	SNP	G	A	A	rs149221663		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:10348605G>A	uc002gmn.2	-	36	5355	c.5244C>T	c.(5242-5244)ATC>ATT	p.I1748I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1748	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTTCCTGGACGATGTCCTCCA	0.468													63	69					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10401113	10401113	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:10401113C>T	uc002gmo.2	-	31	4397	c.4303G>A	c.(4303-4305)GAT>AAT	p.D1435N	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1435	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTCTCAACATCAATCATGAGG	0.458													42	50					0	0	0.003610	0	0
MYH2	4620	broad.mit.edu	37	17	10431131	10431131	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:10431131C>T	uc010coi.2	-	28	3933	c.3805G>A	c.(3805-3807)GAA>AAA	p.E1269K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1269K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1269	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGCTCCTCTTCCTTTGATTTC	0.488													47	55					0	0	0.003610	0	0
MYH2	4620	broad.mit.edu	37	17	10432094	10432094	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:10432094C>T	uc010coi.2	-	27	3785	c.3657G>A	c.(3655-3657)GTG>GTA	p.V1219V	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.V1219V|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1219	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCTTCTGCTTCACTCGCTGCA	0.512													56	53					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11608399	11608399	+	Missense_Mutation	SNP	G	A	A	rs149294395	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:11608399G>A	uc002gne.2	+	26	5517	c.5449G>A	c.(5449-5451)GAG>AAG	p.E1817K	DNAH9_uc010coo.2_Missense_Mutation_p.E1111K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1817	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTGGGATGACGAGGTCAAACA	0.502													42	47					0	0	0.002522	0	0
DNAH9	1770	broad.mit.edu	37	17	11659961	11659961	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:11659961G>A	uc002gne.2	+	34	6883	c.6815G>A	c.(6814-6816)CGC>CAC	p.R2272H	DNAH9_uc010coo.2_Missense_Mutation_p.R1566H	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2272	AAA 2 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGCCACCTGCGCACAGCCACT	0.547													66	64					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11671865	11671865	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:11671865C>T	uc002gne.2	+	37	7334	c.7266C>T	c.(7264-7266)ATC>ATT	p.I2422I	DNAH9_uc010coo.2_Silent_p.I1716I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2422					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACTATTACATCGACCCAGAGA	0.522													26	39					0	0	0.007291	0	0
DNAH9	1770	broad.mit.edu	37	17	11784661	11784661	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:11784661G>A	uc002gne.2	+	55	10805	c.10737G>A	c.(10735-10737)AGG>AGA	p.R3579R	DNAH9_uc010coo.2_Silent_p.R2873R|DNAH9_uc002gnf.2_5'Flank|DNAH9_uc010vvh.1_5'Flank	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3579	AAA 5 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCGTGACCAGGGATGGCCTGG	0.582													33	24					0	0	0.004289	0	0
ELAC2	60528	broad.mit.edu	37	17	12908385	12908385	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:12908385G>A	uc002gnz.3	-	11	999	c.904C>T	c.(904-906)CCT>TCT	p.P302S	ELAC2_uc002gnv.3_5'Flank|ELAC2_uc002gnw.3_5'UTR|ELAC2_uc002gnx.3_Missense_Mutation_p.P62S|ELAC2_uc010vvo.1_Missense_Mutation_p.P125S|ELAC2_uc010vvp.1_Missense_Mutation_p.P283S|ELAC2_uc010vvq.1_Missense_Mutation_p.P302S|ELAC2_uc010vvr.1_Missense_Mutation_p.P262S	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	302					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						GCAGCACCAGGATCTGGAGGA	0.502									Hereditary_Prostate_Cancer				62	71					0	0	0.003610	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13399989	13399989	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:13399989G>A	uc002gob.1	-	2	1544	c.746C>T	c.(745-747)GCC>GTC	p.A249V		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	249	PAPS and substrate.|Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GTCCGAGATGGCCCTGGTCAC	0.642													8	50					0	0	0.004990	0	0
MEIS3P1	4213	broad.mit.edu	37	17	15690787	15690787	+	Silent	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:15690787G>T	uc002gpc.2	+	1	624	c.603G>T	c.(601-603)ACG>ACT	p.T201T		NR_002211				RecName: Full=Homeobox protein Meis3; AltName: Full=Meis1-related protein 2;												0						CGCAGGACACGGGGCTTACCA	0.577													33	40					1.42033e-22	2.2604e-22	0.004289	1	0
C17orf76	388341	broad.mit.edu	37	17	16365616	16365616	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:16365616C>T	uc010cph.1	-	2	507	c.331G>A	c.(331-333)GAC>AAC	p.D111N	C17orf76_uc002gqh.2_Missense_Mutation_p.D111N|NCRNA00188_uc010vwl.1_Intron|NCRNA00188_uc010vwm.1_Intron|NCRNA00188_uc010vwn.1_Intron|NCRNA00188_uc010cpe.2_Intron|NCRNA00188_uc010vwo.1_Intron|NCRNA00188_uc010vwp.1_Intron	NM_001113567	NP_001107039	Q8NAA5	CQ076_HUMAN	hypothetical protein LOC388341 isoform 1	111											0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0887)		ATGATGAGGTCGTGTGTGATG	0.622													12	10					0	0	0.001855	0	0
ZNF624	57547	broad.mit.edu	37	17	16526300	16526300	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:16526300G>A	uc010cpi.1	-	6	1983	c.1900C>T	c.(1900-1902)CAT>TAT	p.H634Y		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	634	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		ACTCCAGTATGAATTTTCTGA	0.388													62	96					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	17	20744515	20744515	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:20744515C>T	uc010crb.1	+	1		c.175C>T								Homo sapiens cDNA clone IMAGE:6269068, partial cds.																		GGACCGCCCCCTTGGGGACCC	0.736													15	8					0	0	0.002450	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319082	21319082	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:21319082C>T	uc002gyv.1	+	3	1133	c.428C>T	c.(427-429)ACC>ATC	p.T143I		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	143	Selectivity filter (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	ACGCAGACCACCATCGGCTAC	0.657										Prostate(3;0.18)			5	31					0	0	0.003080	0	0
LGALS9	3965	broad.mit.edu	37	17	25974345	25974345	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:25974345C>T	uc002gzp.2	+	10	926	c.808C>T	c.(808-810)CCC>TCC	p.P270S	LGALS9_uc002gzq.2_Missense_Mutation_p.P238S|LGALS9_uc002gzr.2_Missense_Mutation_p.P181S|LGALS9_uc010waa.1_Intron|LGALS9_uc002gzs.2_Intron	NM_009587	NP_033665	O00182	LEG9_HUMAN	galectin-9 isoform long	270	Galectin 2.			P -> L (in Ref. 1; CAA88922).	positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	galactose binding|signal transducer activity				0	Lung NSC(42;0.0103)		BRCA - Breast invasive adenocarcinoma(3;0.0141)	UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		CCACCTGAACCCCCGTTTTGA	0.572													14	31					0	0	0.003163	0	0
KIAA0100	9703	broad.mit.edu	37	17	26958672	26958672	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:26958672G>A	uc002hbu.2	-	23	4223	c.4124C>T	c.(4123-4125)TCT>TTT	p.S1375F		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	1375						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					ACTCCAATCAGAGATAAGGCG	0.522													18	18					0	0	0.006122	0	0
ATAD5	79915	broad.mit.edu	37	17	29170935	29170935	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:29170935C>T	uc002hfs.1	+	5	2592	c.2246C>T	c.(2245-2247)TCT>TTT	p.S749F	ATAD5_uc002hft.1_Missense_Mutation_p.S646F	NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	749					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				TCTTAGGATTCTGTTATAATA	0.259													35	25					0	0	0.002836	0	0
NF1	4763	broad.mit.edu	37	17	29553501	29553501	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:29553501C>T	uc002hgg.2	+	18	2383	c.2050C>T	c.(2050-2052)CAG>TAG	p.Q684*	NF1_uc002hgh.2_Nonsense_Mutation_p.Q684*|NF1_uc010csn.1_Nonsense_Mutation_p.Q544*|NF1_uc002hgi.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	684					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)|p.Q684*(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CCGACAAGCCCAGACCAAACT	0.507			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			22	31					0	0	0.002780	0	0
NF1	4763	broad.mit.edu	37	17	29592318	29592318	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:29592318C>T	uc002hgg.2	+	36	5129	c.4796C>T	c.(4795-4797)TCC>TTC	p.S1599F	NF1_uc002hgh.2_Missense_Mutation_p.S1578F|NF1_uc002hgi.1_Missense_Mutation_p.S611F|NF1_uc010cso.2_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1599	CRAL-TRIO.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(3)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GCTGGGACTTCCAAAGCTGGG	0.313			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			31	32					0	0	0.006999	0	0
RAB11FIP4	84440	broad.mit.edu	37	17	29849020	29849020	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:29849020C>T	uc002hgn.1	+	6	1075	c.846C>T	c.(844-846)AAC>AAT	p.N282N	RAB11FIP4_uc002hgo.2_Silent_p.N180N	NM_032932	NP_116321	Q86YS3	RFIP4_HUMAN	RAB11 family interacting protein 4 (class II)	282	Potential.|Necessary for interaction with RAB11A, subcellular location, homo- or heterooligomerization.				cytokinesis|interspecies interaction between organisms|protein transport	cleavage furrow|endocytic vesicle|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding			skin(1)	1		all_cancers(10;3.62e-13)|all_epithelial(10;0.000387)|all_lung(9;0.0132)|Breast(31;0.014)|all_hematologic(16;0.015)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0259)|Ovarian(249;0.0423)|Lung NSC(157;0.066)				AGAAAATCAACCTGCTCAATG	0.577													36	53					0	0	0.003610	0	0
RHOT1	55288	broad.mit.edu	37	17	30533929	30533929	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:30533929T>C	uc002hgz.2	+	17	1656	c.1417T>C	c.(1417-1419)TTG>CTG	p.L473L	RHOT1_uc002hgw.2_Silent_p.L473L|RHOT1_uc002hgy.2_Silent_p.L473L|RHOT1_uc002hha.2_Silent_p.L346L|RHOT1_uc010csv.2_RNA|RHOT1_uc002hgx.2_Silent_p.L346L|RHOT1_uc010wby.1_Silent_p.L473L|RHOT1_uc002hhb.2_Silent_p.L452L|RHOT1_uc002hgv.2_Silent_p.L473L	NM_018307	NP_060777	Q8IXI2	MIRO1_HUMAN	ras homolog gene family, member T1 isoform 3	473	Miro 2.|Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(56;0.0255)|Breast(31;0.116)|Ovarian(249;0.182)				CTTTTACAAGTTGCATGATAT	0.303													14	17					0	0	0.001855	0	0
ACCN1	40	broad.mit.edu	37	17	31415911	31415911	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:31415911G>A	uc002hhu.2	-	3	1078	c.804C>T	c.(802-804)TTC>TTT	p.F268F	ACCN1_uc002hht.2_Silent_p.F319F	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	268	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	CAAAGGTCTGGAACCCTGGAG	0.577													14	12					0	0	0.004007	0	0
ACCN1	40	broad.mit.edu	37	17	32483453	32483453	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:32483453G>A	uc002hhu.2	-	1	373	c.99C>T	c.(97-99)TTC>TTT	p.F33F		NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	33	Cytoplasmic (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	GCCCATACACGAAGATGTGGC	0.612													15	13					0	0	0.004990	0	0
UNC45B	146862	broad.mit.edu	37	17	33482367	33482368	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:33482367_33482368CC>TT	uc002hja.2	+	7	789_790	c.692_693CC>TT	c.(691-693)GCC>GTT	p.A231V	UNC45B_uc002hjb.2_Missense_Mutation_p.A231V|UNC45B_uc002hjc.2_Missense_Mutation_p.A231V|UNC45B_uc010cto.2_Missense_Mutation_p.A231V	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	231	ARM 2.				cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				AGCCTCATGGCCGTGGAGAATG	0.569													34	26					0	0	0.004672	0	0
SLFN12L	342615	broad.mit.edu	37	17	33802058	33802058	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:33802058C>T	uc002hjn.2	-	5	2617	c.1738G>A	c.(1738-1740)GAC>AAC	p.D580N		NM_001145027	NP_001138499			schlafen family member 12-like											ovary(1)	1						TTTTCCAAGTCTTTCATTGTT	0.294													13	6					0	0	0.001368	0	0
SLFN12L	342615	broad.mit.edu	37	17	33802148	33802148	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:33802148G>C	uc002hjn.2	-	5	2527	c.1648C>G	c.(1648-1650)CCT>GCT	p.P550A		NM_001145027	NP_001138499			schlafen family member 12-like											ovary(1)	1						TTGCCTTCAGGGCTCAAGTAG	0.383													25	34					0	0	0.009535	0	0
MLLT6	4302	broad.mit.edu	37	17	36873715	36873715	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:36873715C>T	uc002hqi.3	+	11	1695	c.1682C>T	c.(1681-1683)TCC>TTC	p.S561F	MLLT6_uc002hqj.2_5'UTR|MLLT6_uc002hqk.3_5'Flank	NM_005937	NP_005928	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	561					regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|prostate(1)|lung(1)|skin(1)	6	Breast(7;4.43e-21)					GACCCCATCTCCCACAGTGGC	0.662			T	MLL	AL								28	43					0	0	0.002445	0	0
FBXO47	494188	broad.mit.edu	37	17	37093532	37093532	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:37093532C>T	uc002hrc.2	-	11	1455	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K		NM_001008777	NP_001008777	Q5MNV8	FBX47_HUMAN	F-box protein 47	419											0						CTGTCATCTTCATCACGGTCT	0.313													17	21					0	0	0.007413	0	0
MED1	5469	broad.mit.edu	37	17	37580986	37580986	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:37580986G>A	uc002hrv.3	-	11	957	c.745C>T	c.(745-747)CGA>TGA	p.R249*	MED1_uc010wee.1_Nonsense_Mutation_p.R77*|MED1_uc002hru.2_Nonsense_Mutation_p.R249*	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	249	Interaction with ESR1.|Interaction with the Mediator complex.|Interaction with the Mediator complex and THRA.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		CCCAAAGATCGAGAAACTGGG	0.373										HNSCC(31;0.082)			30	39					0	0	0.002096	0	0
PGAP3	93210	broad.mit.edu	37	17	37840880	37840880	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:37840880G>A	uc002hsj.2	-	3	445	c.402C>T	c.(400-402)CCC>CCT	p.P134P	PGAP3_uc010cvy.2_RNA|PGAP3_uc010wej.1_Silent_p.P134P|PGAP3_uc002hsk.2_Intron|PGAP3_uc010cvz.2_Silent_p.P134P	NM_033419	NP_219487	Q96FM1	PGAP3_HUMAN	per1-like domain containing 1 precursor	134	Cytoplasmic (Potential).				GPI anchor biosynthetic process	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	hydrolase activity, acting on ester bonds			upper_aerodigestive_tract(1)	1						TGTGGTACATGGGGGAGGAGG	0.587													20	11					0	0	0.010504	0	0
ERBB2	2064	broad.mit.edu	37	17	37865597	37865597	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:37865597C>T	uc002hso.2	+	4	704	c.466C>T	c.(466-468)CAG>TAG	p.Q156*	ERBB2_uc002hsm.2_Nonsense_Mutation_p.Q126*|ERBB2_uc010cwa.2_Nonsense_Mutation_p.Q141*|ERBB2_uc002hsp.2_5'UTR|ERBB2_uc010cwb.2_Nonsense_Mutation_p.Q156*|ERBB2_uc010wek.1_Intron|ERBB2_uc002hsl.2_Nonsense_Mutation_p.Q126*|ERBB2_uc002hsn.1_Nonsense_Mutation_p.Q156*	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	156	Extracellular (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	GGTCTTGATCCAGCGGAACCC	0.552		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			30	45					0	0	0.009535	0	0
TOP2A	7153	broad.mit.edu	37	17	38568058	38568058	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:38568058G>A	uc002huq.2	-	8	928	c.802C>T	c.(802-804)CGT>TGT	p.R268C	TOP2A_uc002hur.1_5'Flank	NM_001067	NP_001058	P11388	TOP2A_HUMAN	DNA topoisomerase II, alpha isozyme	268					apoptotic chromosome condensation|DNA ligation|DNA repair|DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|phosphatidylinositol-mediated signaling|positive regulation of apoptosis|positive regulation of retroviral genome replication|resolution of meiotic recombination intermediates|sister chromatid segregation	cytoplasm|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|drug binding|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity|ubiquitin binding			ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00183)		Amsacrine(DB00276)|Ciprofloxacin(DB00537)|Dexrazoxane(DB00380)|Doxorubicin(DB00997)|Enoxacin(DB00467)|Epirubicin(DB00445)|Etoposide(DB00773)|Fleroxacin(DB04576)|Gatifloxacin(DB01044)|Idarubicin(DB01177)|Levofloxacin(DB01137)|Lomefloxacin(DB00978)|Lucanthone(DB04967)|Mitoxantrone(DB01204)|Moxifloxacin(DB00218)|Norfloxacin(DB01059)|Ofloxacin(DB01165)|Pefloxacin(DB00487)|Podofilox(DB01179)|Sparfloxacin(DB01208)|Teniposide(DB00444)|Trovafloxacin(DB00685)|Valrubicin(DB00385)	ACATAACTACGAAATCCTTTT	0.343													13	27					0	0	0.001368	0	0
KRT28	162605	broad.mit.edu	37	17	38954492	38954492	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:38954492C>T	uc002hvh.1	-	3	751	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	229	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CCTACCTCTTCGTGGTTCTTT	0.463													44	65					0	0	0.003610	0	0
KRTAP1-3	81850	broad.mit.edu	37	17	39190932	39190932	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:39190932G>A	uc002hvv.2	-	1	176	c.142C>T	c.(142-144)CCT>TCT	p.P48S		NM_030966	NP_112228	Q8IUG1	KRA13_HUMAN	keratin associated protein 1-3	58			Missing (in allele KAP1.9).	GFPSFSTSGTCSS -> DFLASQLVDLQL (in Ref. 1).		extracellular region|keratin filament	structural constituent of epidermis				0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GAGAAGCTAGGAAATCCGCAG	0.622													34	37					0	0	0.003271	0	0
KRT31	3881	broad.mit.edu	37	17	39553606	39553606	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:39553606G>A	uc002hwn.2	-	1	239	c.186C>T	c.(184-186)TTC>TTT	p.F62F	KRT31_uc010cxn.2_Silent_p.F62F	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	62	Coil 1A.|Rod.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				GGTCGTTCAGGAACTGCATAG	0.622													45	63					0	0	0.003610	0	0
KRT36	8689	broad.mit.edu	37	17	39643322	39643322	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:39643322G>A	uc002hwt.2	-	6	1088	c.1088C>T	c.(1087-1089)TCT>TTT	p.S363F		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	363	Rod.|Coil 2.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				GCGGATCTCAGACAGCTGGGC	0.637													58	61					0	0	0.003610	0	0
KRT16	3868	broad.mit.edu	37	17	39768556	39768556	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:39768556C>T	uc002hxg.3	-	1	524	c.385G>A	c.(385-387)GCC>ACC	p.A129T	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	129	Coil 1A.|Rod.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				AGGTAGGAGGCCAGGCGGTCA	0.458													37	40					0	0	0.003610	0	0
KAT2A	2648	broad.mit.edu	37	17	40271693	40271693	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:40271693G>A	uc002hyx.2	-	5	803	c.743C>T	c.(742-744)CCC>CTC	p.P248L		NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	248					chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						CCGCTCCCGGGGAGCCAGGTG	0.557													15	10					0	0	0.006122	0	0
FMNL1	752	broad.mit.edu	37	17	43314976	43314976	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:43314976C>T	uc002iin.2	+	9	1064	c.864C>T	c.(862-864)ATC>ATT	p.I288I		NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	288	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						GACATGACATCATCCTTGCAG	0.557													63	90					0	0	0.003610	0	0
LRRC46	90506	broad.mit.edu	37	17	45911879	45911879	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:45911879C>A	uc002ima.2	+	3	461	c.205C>A	c.(205-207)CAC>AAC	p.H69N	MRPL10_uc010wky.1_5'Flank|MRPL10_uc002ilz.2_5'Flank|MRPL10_uc002ily.2_5'Flank|LRRC46_uc002imb.2_5'UTR	NM_033413	NP_219481	Q96FV0	LRC46_HUMAN	leucine rich repeat containing 46	69	LRR 2.									ovary(1)	1						CCAGAATCTTCACAGTCTCTA	0.458													33	49					3.67414e-24	5.85267e-24	0.002445	1	0
SP2	6668	broad.mit.edu	37	17	45994184	45994184	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:45994184G>A	uc002imk.2	+	3	884	c.747G>A	c.(745-747)AAG>AAA	p.K249K	SP2_uc002iml.2_Silent_p.K242K|uc002imm.2_Intron	NM_003110	NP_003101	Q02086	SP2_HUMAN	Sp2 transcription factor	249					immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|histone deacetylase binding|zinc ion binding				0						AAGCAAGGAAGAAGAGCCTTC	0.582													49	43					0	0	0.003610	0	0
COPZ2	51226	broad.mit.edu	37	17	46109536	46109536	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:46109536C>T	uc002imy.2	-	10	493	c.480G>A	c.(478-480)GAG>GAA	p.E160E		NM_016429	NP_057513	Q9P299	COPZ2_HUMAN	coatomer protein complex, subunit zeta 2	160					intracellular protein transport|vesicle-mediated transport	cis-Golgi network|COPI vesicle coat					0						CATCCACAATCTCGTCCAGCA	0.577													10	8					0	0	0.000978	0	0
SKAP1	8631	broad.mit.edu	37	17	46257444	46257444	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:46257444T>A	uc002ini.1	-	9	910	c.798A>T	c.(796-798)GAA>GAT	p.E266D	SKAP1_uc002inj.1_Missense_Mutation_p.E266D|SKAP1_uc010dbd.1_Missense_Mutation_p.E172D|SKAP1_uc010dbe.1_Missense_Mutation_p.E266D	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	266					positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						TATCTTCTTCTTCTTTCTCCT	0.408													38	57					0	0	0.009718	0	0
ACSF2	80221	broad.mit.edu	37	17	48551589	48551589	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:48551589C>T	uc002iqu.2	+	15	1862	c.1758C>T	c.(1756-1758)ATC>ATT	p.I586I	ACSF2_uc010wml.1_Silent_p.I543I|ACSF2_uc010wmm.1_Silent_p.I611I|ACSF2_uc010wmn.1_Silent_p.I573I|ACSF2_uc010wmo.1_Silent_p.I426I|ACSF2_uc010dbt.1_Silent_p.I90I	NM_025149	NP_079425	Q96CM8	ACSF2_HUMAN	acyl-CoA synthetase family member 2 precursor	586					fatty acid metabolic process	mitochondrion	ATP binding|ligase activity				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			CGAAGTACATCGTGTTTGTCA	0.592													38	56					0	0	0.008740	0	0
MKS1	54903	broad.mit.edu	37	17	56291646	56291646	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:56291646G>A	uc002ivr.1	-	6	693	c.618C>T	c.(616-618)ATC>ATT	p.I206I	MKS1_uc010wnq.1_Silent_p.I3I|MKS1_uc002ivs.1_Silent_p.I206I	NM_017777	NP_060247	Q9NXB0	MKS1_HUMAN	Meckel syndrome type 1 protein isoform 1	206					cilium assembly	centrosome|cilium|microtubule basal body	protein binding			ovary(1)	1						GGTCTGCCATGATGTGCATTG	0.532													35	32					0	0	0.004289	0	0
LPO	4025	broad.mit.edu	37	17	56332262	56332262	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:56332262G>A	uc002ivt.2	+	9	1512	c.1196G>A	c.(1195-1197)AGA>AAA	p.R399K	LPO_uc010wns.1_Missense_Mutation_p.R340K|LPO_uc010dcp.2_Missense_Mutation_p.R316K|LPO_uc010dcq.2_Missense_Mutation_p.R70K|LPO_uc010dcr.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	399					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GAACTAAAGAGACTCAACCCT	0.572													53	78					0	0	0.003610	0	0
HSF5	124535	broad.mit.edu	37	17	56557472	56557472	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:56557472C>T	uc002iwi.1	-	2	831	c.707G>A	c.(706-708)GGA>GAA	p.G236E		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	236						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AGGATGCATTCCAAGGGAGTT	0.473													61	47					0	0	0.003610	0	0
TEX14	56155	broad.mit.edu	37	17	56676453	56676453	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:56676453G>A	uc010dcz.1	-	14	2389	c.2271C>T	c.(2269-2271)ATC>ATT	p.I757I	TEX14_uc002iwr.1_Silent_p.I751I|TEX14_uc002iws.1_Silent_p.I751I|TEX14_uc010dda.1_Silent_p.I531I	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	757	Potential.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ATATCTGCTCGATATTCCTCA	0.418													58	81					0	0	0.003610	0	0
TEX14	56155	broad.mit.edu	37	17	56688526	56688526	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:56688526C>T	uc010dcz.1	-	10	1316	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K	TEX14_uc002iwr.1_Missense_Mutation_p.E394K|TEX14_uc002iws.1_Missense_Mutation_p.E394K|TEX14_uc010dda.1_Missense_Mutation_p.E174K	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	400	Protein kinase.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCCCACCTTTCCAACATGTAC	0.527													63	86					0	0	0.003610	0	0
C17orf71	55181	broad.mit.edu	37	17	57288300	57288300	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:57288300C>T	uc002ixi.2	+	1	930	c.888C>T	c.(886-888)CCC>CCT	p.P296P		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	296					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					AACATTCTCCCAAAAGGAGGC	0.498													32	31					0	0	0.002445	0	0
DHX40	79665	broad.mit.edu	37	17	57682819	57682819	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:57682819G>T	uc002ixn.1	+	17	2131	c.1984G>T	c.(1984-1986)GAA>TAA	p.E662*	DHX40_uc010woe.1_Nonsense_Mutation_p.E585*|DHX40_uc010wof.1_Nonsense_Mutation_p.E177*	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	662							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					TCATGAACAGGAAACCAAACT	0.363													17	14					9.7654e-05	0.000154195	0.007413	1	0
CA4	762	broad.mit.edu	37	17	58235480	58235480	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:58235480C>T	uc002iym.3	+	6	666	c.572C>T	c.(571-573)CCC>CTC	p.P191L	CA4_uc010wou.1_RNA	NM_000717	NP_000708	P22748	CAH4_HUMAN	carbonic anhydrase IV precursor	191					bicarbonate transport|one-carbon metabolic process	anchored to external side of plasma membrane|apical plasma membrane|brush border membrane|ER-Golgi intermediate compartment|membrane fraction|perinuclear region of cytoplasm|rough endoplasmic reticulum|secretory granule membrane|trans-Golgi network|transport vesicle membrane	carbonate dehydratase activity|protein binding|zinc ion binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.83e-12)|all cancers(12;6.83e-11)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	TCTAATATCCCCAAACCTGGT	0.612													11	12					0	0	0.003163	0	0
BCAS3	54828	broad.mit.edu	37	17	59067440	59067440	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:59067440C>T	uc002iyv.3	+	15	1439	c.1330C>T	c.(1330-1332)CGT>TGT	p.R444C	BCAS3_uc010wow.1_Missense_Mutation_p.R231C|BCAS3_uc002iyu.3_Missense_Mutation_p.R444C|BCAS3_uc002iyw.3_Missense_Mutation_p.R440C|BCAS3_uc002iyx.1_Missense_Mutation_p.R259C|BCAS3_uc002iyy.3_Missense_Mutation_p.R215C|BCAS3_uc002iyz.3_5'UTR|BCAS3_uc002iza.3_5'UTR	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	444	WD 3.					nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			GCCTTGTGTTCGTACACATAT	0.512													25	29					0	0	0.002780	0	0
METTL2A	339175	broad.mit.edu	37	17	60503709	60503709	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:60503709C>T	uc002izv.2	+	3	270	c.252C>T	c.(250-252)ATC>ATT	p.I84I	METTL2A_uc002izw.2_5'UTR	NM_181725	NP_859076	Q96IZ6	MTL2A_HUMAN	methyltransferase like 2A	84							methyltransferase activity				0			BRCA - Breast invasive adenocarcinoma(2;1.08e-10)			TCTACAAAATCCACGAAAATG	0.348													14	19					0	0	0.003954	0	0
ACE	1636	broad.mit.edu	37	17	61574170	61574170	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:61574170A>G	uc002jau.1	+	24	3537	c.3515A>G	c.(3514-3516)AAG>AGG	p.K1172R	ACE_uc002jav.1_Missense_Mutation_p.K598R|ACE_uc010ddv.1_Missense_Mutation_p.K399R|ACE_uc010wpj.1_Missense_Mutation_p.K557R|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.K377R	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1172	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	ACCGCCATGAAGCTGGGCTTC	0.627													12	23					0	0	0.001855	0	0
LOC146880	146880	broad.mit.edu	37	17	62750150	62750150	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:62750150G>A	uc010wqc.1	-	10		c.2208C>T				NR_026899				Homo sapiens cDNA FLJ30780 fis, clone FEBRA2000856.												0						TGGCATCCAGGATAACCAGAA	0.378													133	163					0	0	0.003610	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62851980	62851980	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:62851980C>T	uc002jey.2	-	13	5368	c.4837G>A	c.(4837-4839)GAA>AAA	p.E1613K	LRRC37A3_uc010wqg.1_Missense_Mutation_p.E731K|LRRC37A3_uc002jex.1_Missense_Mutation_p.E590K|LRRC37A3_uc010wqf.1_Missense_Mutation_p.E651K	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1613	Cytoplasmic (Potential).					integral to membrane					0						TCTTCATCTTCTTGTAATGAC	0.249													42	58					0	0	0.003610	0	0
CCDC46	201134	broad.mit.edu	37	17	63847922	63847922	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:63847922C>A	uc002jfl.2	-	21	2613	c.2394G>T	c.(2392-2394)AAG>AAT	p.K798N	CCDC46_uc010deo.2_Missense_Mutation_p.K540N|CCDC46_uc002jfm.2_Missense_Mutation_p.K798N|CCDC46_uc010dep.2_Missense_Mutation_p.K756N	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	798	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			AATATCTTACCTTTTCCAGTG	0.353													44	68					4.10826e-27	6.54724e-27	0.003610	1	0
ABCA8	10351	broad.mit.edu	37	17	66902247	66902247	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:66902247G>A	uc002jhp.2	-	17	2395	c.2216C>T	c.(2215-2217)TCC>TTC	p.S739F	ABCA8_uc002jhq.2_Missense_Mutation_p.S779F|ABCA8_uc010wqq.1_Missense_Mutation_p.S779F|ABCA8_uc010wqr.1_Missense_Mutation_p.S718F|ABCA8_uc002jhr.2_Missense_Mutation_p.S779F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	739						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					AGTTGTCATGGAAACACCATA	0.308													57	65					0	0	0.003610	0	0
ABCA8	10351	broad.mit.edu	37	17	66902293	66902293	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:66902293C>T	uc002jhp.2	-	17	2349	c.2170G>A	c.(2170-2172)GAT>AAT	p.D724N	ABCA8_uc002jhq.2_Missense_Mutation_p.D764N|ABCA8_uc010wqq.1_Missense_Mutation_p.D764N|ABCA8_uc010wqr.1_Missense_Mutation_p.D703N|ABCA8_uc002jhr.2_Missense_Mutation_p.D764N	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	724						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					CTATCAAGATCCTTGTAAAGT	0.313													38	49					0	0	0.009718	0	0
COG1	9382	broad.mit.edu	37	17	71193158	71193158	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:71193158T>G	uc002jjg.2	+	3	716	c.680T>G	c.(679-681)CTC>CGC	p.L227R	COG1_uc002jjh.2_Missense_Mutation_p.L227R|COG1_uc002jjf.1_Missense_Mutation_p.L227R	NM_018714	NP_061184	Q8WTW3	COG1_HUMAN	component of oligomeric golgi complex 1	227					Golgi organization|intra-Golgi vesicle-mediated transport|protein transport	Golgi membrane|Golgi transport complex	protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			CGCCAAGCCCTCACAGACTTC	0.507													20	31					0	0	0.008871	0	0
TTYH2	94015	broad.mit.edu	37	17	72249960	72249960	+	Silent	SNP	C	T	T	rs144976577		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:72249960C>T	uc002jkc.2	+	13	1543	c.1512C>T	c.(1510-1512)TCC>TCT	p.S504S	TTYH2_uc010wqw.1_Silent_p.S483S|TTYH2_uc002jkd.2_Silent_p.S183S	NM_032646	NP_116035	Q9BSA4	TTYH2_HUMAN	tweety 2 isoform 1	504	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity|protein binding			ovary(3)|large_intestine(1)	4						GGAGAGCCTCCCCTCCGCCTA	0.413													24	29					0	0	0.006320	0	0
DNAI2	64446	broad.mit.edu	37	17	72308292	72308292	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:72308292G>A	uc002jkf.2	+	12	1744	c.1645G>A	c.(1645-1647)GAG>AAG	p.E549K	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_Intron|uc002jkh.1_5'Flank|DNAI2_uc002jki.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	549					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						CAGCAAGGCCGAGGAGGAGTT	0.562									Kartagener_syndrome				9	7					0	0	0.006214	0	0
BTBD17	388419	broad.mit.edu	37	17	72356380	72356380	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:72356380C>T	uc002jkn.2	-	2	90	c.90G>A	c.(88-90)CAG>CAA	p.Q30Q		NM_001080466	NP_001073935	A6NE02	BTBDH_HUMAN	BTB (POZ) domain containing 17 precursor	30						extracellular region					0						CATCGGCTCTCTGTGCTGCAG	0.647													6	6					0	0	0.003080	0	0
NAT9	26151	broad.mit.edu	37	17	72769761	72769761	+	Silent	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:72769761C>A	uc002jlq.2	-	3	218	c.144G>T	c.(142-144)CTG>CTT	p.L48L	NAT9_uc002jlr.2_Silent_p.L47L|TMEM104_uc010wrf.1_5'Flank|TMEM104_uc010wrg.1_5'Flank|TMEM104_uc002jls.3_5'Flank|TMEM104_uc010dfx.2_5'Flank	NM_015654	NP_056469	Q9BTE0	NAT9_HUMAN	N-acetyltransferase 9	48	N-acetyltransferase.					protein complex	N-acetyltransferase activity				0						ACTCCTGCTCCAGGGTCAGCG	0.607													37	50					5.78141e-17	9.18382e-17	0.003214	1	0
SUMO2	6613	broad.mit.edu	37	17	73170892	73170892	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:73170892G>A	uc002jne.2	-	3	349	c.180C>T	c.(178-180)TTC>TTT	p.F60F	SUMO2_uc002jnf.2_Intron	NM_006937	NP_008868	P61956	SUMO2_HUMAN	SMT3 suppressor of mif two 3 homolog 2 isoform a	60	Ubiquitin-like.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation	nucleus	ubiquitin protein ligase binding				0	all_lung(278;0.14)|Lung NSC(278;0.168)					CGTCAAATCGGAATCTGATCT	0.338													16	14					0	0	0.001882	0	0
ITGB4	3691	broad.mit.edu	37	17	73725384	73725384	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:73725384C>T	uc002jpg.2	+	7	792	c.605C>T	c.(604-606)TCC>TTC	p.S202F	ITGB4_uc002jph.2_Missense_Mutation_p.S202F|ITGB4_uc010dgo.2_Missense_Mutation_p.S202F|ITGB4_uc002jpi.3_Missense_Mutation_p.S202F|ITGB4_uc010dgp.1_Missense_Mutation_p.S202F|ITGB4_uc002jpj.2_Missense_Mutation_p.S202F|ITGB4_uc010wsh.1_5'Flank	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	202	VWFA.|Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCCCCCTTCTCCTTCAAGAAC	0.612													25	28					0	0	0.005443	0	0
ITGB4	3691	broad.mit.edu	37	17	73727450	73727450	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:73727450G>A	uc002jpg.2	+	10	1402	c.1215_splice	c.e10+1	p.V405_splice	ITGB4_uc002jph.2_Splice_Site_p.V405_splice|ITGB4_uc010dgo.2_Splice_Site_p.V405_splice|ITGB4_uc002jpi.3_Splice_Site_p.V405_splice|ITGB4_uc010dgp.1_Splice_Site_p.V405_splice|ITGB4_uc002jpj.2_Splice_Site_p.V405_splice|ITGB4_uc010wsh.1_5'Flank	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor						cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGGGGAAGTGGTACGCCTCTG	0.532													20	31					0	0	0.003954	0	0
EVPL	2125	broad.mit.edu	37	17	74004689	74004689	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:74004689C>T	uc002jqi.2	-	22	4825	c.4597G>A	c.(4597-4599)GAA>AAA	p.E1533K	EVPL_uc010wss.1_Missense_Mutation_p.E1555K|EVPL_uc010wst.1_Missense_Mutation_p.E1003K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1533	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CGCTCATCTTCCAGGACGCGG	0.642													23	18					0	0	0.002299	0	0
ZACN	353174	broad.mit.edu	37	17	74075808	74075808	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:74075808C>T	uc002jqn.2	+	3	331	c.248C>T	c.(247-249)TCC>TTC	p.S83F	ZACN_uc002jqo.2_RNA|ZACN_uc010dgu.2_Intron	NM_180990	NP_851321	Q401N2	ZACN_HUMAN	zinc activated ligand-gated ion channel	83	Extracellular (Potential).				response to zinc ion	integral to membrane|membrane fraction|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity				0						ACAATGTCCTCCATGCTGCTG	0.567													12	16					0	0	0.004007	0	0
DNAH17	8632	broad.mit.edu	37	17	76423048	76423048	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:76423048C>T	uc010dhp.1	-	23	3952	c.3730G>A	c.(3730-3732)GAA>AAA	p.E1244K	DNAH17_uc002jvq.2_Missense_Mutation_p.E529K|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CGGCGCATTTCGTTGGTCAGG	0.542													5	8					0	0	0.001168	0	0
ENGASE	64772	broad.mit.edu	37	17	77082359	77082359	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:77082359C>T	uc002jwv.2	+	14	2168	c.2160C>T	c.(2158-2160)GTC>GTT	p.V720V	ENGASE_uc002jww.2_Silent_p.V425V	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	720						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						TGGAGCCTGTCCCCAAGGAAG	0.632													15	27					0	0	0.003163	0	0
CARD14	79092	broad.mit.edu	37	17	78162280	78162280	+	Silent	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:78162280G>C	uc002jxw.1	+	5	975	c.780G>C	c.(778-780)GGG>GGC	p.G260G	CARD14_uc002jxt.1_RNA|CARD14_uc002jxv.2_Silent_p.G260G|CARD14_uc010wud.1_RNA|CARD14_uc002jxx.2_Silent_p.G23G|CARD14_uc010dhu.1_Silent_p.G58G	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1	260	Potential.				activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			AGGAGTCCGGGGATGAGGAGC	0.597													17	17					0	0	0.006122	0	0
SLC26A11	284129	broad.mit.edu	37	17	78201712	78201712	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:78201712C>T	uc002jyb.1	+	7	958	c.689C>T	c.(688-690)CCC>CTC	p.P230L	SLC26A11_uc002jyc.1_Missense_Mutation_p.P230L|SLC26A11_uc002jyd.1_Missense_Mutation_p.P230L|SLC26A11_uc010dhv.1_Missense_Mutation_p.P230L	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	230	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CCCGAGATGCCCCCTGGTGTG	0.587													12	18					0	0	0.001855	0	0
RNF213	57674	broad.mit.edu	37	17	78327409	78327410	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:78327409_78327410GG>AA	uc002jyh.1	+	9	4963_4964	c.4740_4741GG>AA	c.(4738-4743)ATGGAA>ATAAAA	p.1580_1581ME>IK	uc002jyi.1_RNA|RNF213_uc010dhw.1_5'Flank	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			AGGAGGCCATGGAAACAGAAAG	0.584													21	23					0	0	0.004672	0	0
RPTOR	57521	broad.mit.edu	37	17	78811795	78811795	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:78811795C>T	uc002jyt.1	+	10	2015	c.1210C>T	c.(1210-1212)CGG>TGG	p.R404W	RPTOR_uc010wuf.1_Missense_Mutation_p.R219W|RPTOR_uc010wug.1_Missense_Mutation_p.R404W	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	404					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						CACTGCGTTTCGGGTGAGTCC	0.627													5	7					0	0	0.001984	0	0
SLC38A10	124565	broad.mit.edu	37	17	79234139	79234139	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:79234139G>A	uc002jzz.1	-	11	1562	c.1187C>T	c.(1186-1188)TCT>TTT	p.S396F	SLC38A10_uc002jzy.1_Missense_Mutation_p.S314F|SLC38A10_uc002kab.2_Missense_Mutation_p.S396F	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	396	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CTCGCTCACAGACAGTGTGGT	0.672													9	7					0	0	0.008291	0	0
FASN	2194	broad.mit.edu	37	17	80041436	80041436	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:80041436G>A	uc002kdu.2	-	31	5415	c.5298C>T	c.(5296-5298)TTC>TTT	p.F1766F	FASN_uc002kdv.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1766	Enoyl reductase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	CAATTTCCAGGAAGCGACCGT	0.642													11	14					0	0	0.000978	0	0
FASN	2194	broad.mit.edu	37	17	80046411	80046411	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:80046411G>A	uc002kdu.2	-	16	2565	c.2448C>T	c.(2446-2448)TTC>TTT	p.F816F	FASN_uc002kdw.1_Silent_p.F32F	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	816	Acyl and malonyl transferases (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	CCACAGGTGGGAACAAGGCAT	0.657													18	21					0	0	0.002299	0	0
TEX19	400629	broad.mit.edu	37	17	80320057	80320057	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:80320057G>A	uc002keq.2	+	2	340	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_207459	NP_997342	Q8NA77	TEX19_HUMAN	testis expressed 19	11						nucleus					0						GCGGTATGAGGAAGAGGGCAT	0.567													52	65					0	0	0.003610	0	0
FOXK2	3607	broad.mit.edu	37	17	80540786	80540787	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr17:80540786_80540787CC>TT	uc002kfn.2	+	5	1250_1251	c.1079_1080CC>TT	c.(1078-1080)ACC>ATT	p.T360I	FOXK2_uc002kfm.1_Missense_Mutation_p.T360I|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	360					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			TGCTTTAGAACCCCTCTGGGAC	0.47													9	20					0	0	0.004672	0	0
MYOM1	8736	broad.mit.edu	37	18	3129437	3129437	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:3129437C>T	uc002klp.2	-	18	2921	c.2587G>A	c.(2587-2589)GAA>AAA	p.E863K	MYOM1_uc002klq.2_Intron	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	863						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GGGGAGGCTTCATGCACGCGC	0.557											OREG0024838	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	67	67					0	0	0.003610	0	0
ZFP161	7541	broad.mit.edu	37	18	5291185	5291185	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:5291185G>A	uc002kmq.2	-	4	1183	c.1022C>T	c.(1021-1023)TCA>TTA	p.S341L	ZFP161_uc002kmr.2_Missense_Mutation_p.S341L|ZFP161_uc010dkp.2_Missense_Mutation_p.S341L	NM_003409	NP_003400	O43829	ZF161_HUMAN	zinc finger protein 161 homolog	341	C2H2-type 3.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACGGATAAATGATTTTCCACA	0.443													44	40					0	0	0.009718	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6889985	6889985	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:6889985C>T	uc010wzi.1	+	12	1342	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	ARHGAP28_uc002knc.2_Silent_p.F493F|ARHGAP28_uc002knd.2_Silent_p.F386F|ARHGAP28_uc002kne.2_Silent_p.F386F|ARHGAP28_uc002knf.2_Silent_p.F377F			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	368					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				ACCTTTTCTTCAGTAGAAGCA	0.408													33	38					0	0	0.002445	0	0
FAM38B	63895	broad.mit.edu	37	18	10671737	10671737	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:10671737C>T	uc002kor.3	-	14	2057	c.1917G>A	c.(1915-1917)GGG>GGA	p.G639G	FAM38B_uc002koq.2_Silent_p.G474G	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2682	Helical; (Potential).					integral to membrane	ion channel activity			ovary(1)	1						GGACAAATTTCCCAATCACAA	0.333													40	30					0	0	0.002522	0	0
MC5R	4161	broad.mit.edu	37	18	13825911	13825911	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:13825911C>T	uc010xaf.1	+	1	147	c.147C>T	c.(145-147)ATC>ATT	p.I49I		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	49	Helical; Name=1; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						TGGGTGTCATCAGCCTCTTGG	0.512													15	17					0	0	0.002450	0	0
ZNF521	25925	broad.mit.edu	37	18	22805882	22805882	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:22805882G>A	uc002kvk.2	-	4	2247	c.2000C>T	c.(1999-2001)CCT>CTT	p.P667L	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.P667L|ZNF521_uc002kvl.2_Missense_Mutation_p.P447L	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	667	C2H2-type 15.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					GTTGCACTGAGGACAGGTCAA	0.413			T	PAX5	ALL								58	78					0	0	0.003610	0	0
DSC2	1824	broad.mit.edu	37	18	28648096	28648096	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:28648096G>A	uc002kwl.3	-	16	3045	c.2591C>T	c.(2590-2592)TCG>TTG	p.S864L	DSC2_uc002kwk.3_3'UTR	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	864	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			CCCAGCCACCGATCCTCTTCC	0.423													28	46					0	0	0.005443	0	0
DSG4	147409	broad.mit.edu	37	18	28983388	28983388	+	Missense_Mutation	SNP	G	A	A	rs74896702		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:28983388G>A	uc002kwq.2	+	11	1562	c.1427G>A	c.(1426-1428)GGA>GAA	p.G476E	DSG4_uc002kwr.2_Missense_Mutation_p.G476E	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	476	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding	p.G476V(1)		central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GATGGCTCTGGAAAAACAGCT	0.403													7	7					0	0	0.003080	0	0
DSG3	1830	broad.mit.edu	37	18	29056114	29056114	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:29056114G>A	uc002kws.2	+	16	3000	c.2891G>A	c.(2890-2892)AGG>AAG	p.R964K	DSG3_uc002kwt.2_Missense_Mutation_p.R246K	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	964	Cytoplasmic (Potential).|Desmoglein repeat 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GTGACAGAAAGGGTGATCTGT	0.502													36	58					0	0	0.004878	0	0
C18orf34	374864	broad.mit.edu	37	18	30804827	30804827	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:30804827G>A	uc002kxn.2	-	16	1872	c.1730C>T	c.(1729-1731)GCC>GTC	p.A577V	C18orf34_uc010dme.1_Missense_Mutation_p.A91V|C18orf34_uc010xbr.1_Missense_Mutation_p.A577V|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.A577V|C18orf34_uc002kxp.2_Missense_Mutation_p.A577V	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	577										ovary(1)	1						CAGTGACATGGCACATATTGC	0.368													24	36					0	0	0.003954	0	0
ASXL3	80816	broad.mit.edu	37	18	31324907	31324907	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:31324907G>A	uc010dmg.1	+	12	5150	c.5095G>A	c.(5095-5097)GCC>ACC	p.A1699T	ASXL3_uc002kxq.2_Missense_Mutation_p.A1406T	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1699					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TGCAGAGGGAGCCTCTAGTGT	0.522													42	45					0	0	0.003214	0	0
NOL4	8715	broad.mit.edu	37	18	31803000	31803000	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:31803000C>T	uc010dmi.2	-	1	447	c.218G>A	c.(217-219)GGA>GAA	p.G73E	NOL4_uc002kxr.3_5'Flank|NOL4_uc010xbt.1_5'Flank|NOL4_uc010dmh.2_5'Flank|NOL4_uc010xbu.1_Missense_Mutation_p.G73E|NOL4_uc002kxt.3_Missense_Mutation_p.G73E	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	73						nucleolus	RNA binding			ovary(3)	3						GCCGCCGCCTCCCCCGCGGAC	0.622													20	26					0	0	0.008871	0	0
ZNF396	252884	broad.mit.edu	37	18	32954069	32954069	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:32954069G>A	uc010xcf.1	-	2	320	c.188C>T	c.(187-189)TCA>TTA	p.S63L		NM_145756	NP_665699	Q96N95	ZN396_HUMAN	zinc finger protein 396	63	SCAN box.				viral reproduction	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGGCCCAGGTGAATCCTGGTA	0.592													19	23					0	0	0.006122	0	0
TCEB3C	162699	broad.mit.edu	37	18	44549182	44549182	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:44549182C>T	uc010dnr.2	-	1	1117	c.1117G>A	c.(1117-1119)GAT>AAT	p.D373N	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_001100817	NP_001094287	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	373	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TACGGCTGATCGGGCGTCCAC	0.582													37	169					0	0	0.003610	0	0
MYO5B	4645	broad.mit.edu	37	18	47402197	47402197	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:47402197C>T	uc002leb.2	-	26	3685	c.3397G>A	c.(3397-3399)GAA>AAA	p.E1133K	MYO5B_uc002lea.2_Missense_Mutation_p.E274K	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1133	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		AGGCCAATTTCCTTCAAAGGA	0.498													29	29					0	0	0.002096	0	0
SKA1	220134	broad.mit.edu	37	18	47918471	47918471	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:47918471C>T	uc002let.2	+	7	806	c.622C>T	c.(622-624)CGT>TGT	p.R208C	SKA1_uc002leu.2_Missense_Mutation_p.R208C|SKA1_uc010xdl.1_Missense_Mutation_p.R162C	NM_145060	NP_659497	Q96BD8	SKA1_HUMAN	spindle and KT associated 1	208					cell division|chromosome segregation|mitotic anaphase|mitotic prometaphase|regulation of microtubule polymerization or depolymerization	condensed chromosome outer kinetochore|cytosol|spindle microtubule	microtubule binding				0						ATTTTTAGGTCGTTATTTTAT	0.328													36	42					0	0	0.007835	0	0
MAPK4	5596	broad.mit.edu	37	18	48190365	48190365	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:48190365G>A	uc002lev.2	+	2	1037	c.37G>A	c.(37-39)GGG>AGG	p.G13R	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Missense_Mutation_p.G13R	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	13					cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CAGTGTCTATGGGTATGACCT	0.602													34	41					0	0	0.004289	0	0
MAPK4	5596	broad.mit.edu	37	18	48190460	48190460	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:48190460G>A	uc002lev.2	+	2	1132	c.132G>A	c.(130-132)CGG>CGA	p.R44R	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Silent_p.R44R	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	44	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		GGGCCTGCCGGAAGGTCGCTG	0.602													31	40					0	0	0.003271	0	0
DCC	1630	broad.mit.edu	37	18	50278518	50278518	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:50278518C>T	uc002lfe.1	+	2	773	c.186C>T	c.(184-186)TCC>TCT	p.S62S	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	62	Extracellular (Potential).|Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TCGACTGCTCCGCGGAGTCCG	0.502													20	21					0	0	0.008871	0	0
DCC	1630	broad.mit.edu	37	18	50912481	50912481	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:50912481G>A	uc002lfe.1	+	16	3015	c.2428G>A	c.(2428-2430)GAA>AAA	p.E810K	DCC_uc010xdr.1_Missense_Mutation_p.E658K|DCC_uc010dpf.1_Missense_Mutation_p.E465K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	810	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TCCTCTTTATGAAAGTGCCAC	0.343													24	41					0	0	0.004656	0	0
DCC	1630	broad.mit.edu	37	18	51025679	51025679	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:51025679G>A	uc002lfe.1	+	27	4497	c.3910G>A	c.(3910-3912)GGA>AGA	p.G1304R	DCC_uc010dpf.1_Missense_Mutation_p.G937R	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1304	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGTGAGTGAAGGACCAACTAC	0.502													35	28					0	0	0.006230	0	0
RAB27B	5874	broad.mit.edu	37	18	52546659	52546659	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:52546659G>A	uc002lfr.2	+	3	324	c.213G>A	c.(211-213)CAG>CAA	p.Q71Q		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	71					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		TGCATCTTCAGCTTTGGGACA	0.373													45	39					0	0	0.003610	0	0
RAB27B	5874	broad.mit.edu	37	18	52555255	52555255	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:52555255A>T	uc002lfr.2	+	5	484	c.373A>T	c.(373-375)AAT>TAT	p.N125Y		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	125					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		TTATTGTGAAAATCCAGATAT	0.408													62	58					0	0	0.003610	0	0
CCDC68	80323	broad.mit.edu	37	18	52608288	52608288	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:52608288C>T	uc002lfs.2	-	4	316	c.144G>A	c.(142-144)AGG>AGA	p.R48R	CCDC68_uc002lft.2_Silent_p.R48R	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	48										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		ACATCTGGGTCCTGATCTTTT	0.343													19	24					0	0	0.001882	0	0
TCF4	6925	broad.mit.edu	37	18	52937091	52937091	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:52937091G>A	uc002lfz.2	-	11	1505	c.893C>T	c.(892-894)CCT>CTT	p.P298L	TCF4_uc002lfw.3_Missense_Mutation_p.P138L|TCF4_uc010xdu.1_Missense_Mutation_p.P168L|TCF4_uc010xdv.1_Missense_Mutation_p.P168L|TCF4_uc002lfx.2_Missense_Mutation_p.P227L|TCF4_uc010xdw.1_Missense_Mutation_p.P168L|TCF4_uc002lfy.2_Missense_Mutation_p.P256L|TCF4_uc010xdx.1_Missense_Mutation_p.P274L|TCF4_uc010dph.1_Missense_Mutation_p.P298L|TCF4_uc010xdy.1_Missense_Mutation_p.P274L|TCF4_uc002lga.2_Missense_Mutation_p.P400L|TCF4_uc002lgb.1_Missense_Mutation_p.P138L|TCF4_uc010dpi.2_Missense_Mutation_p.P304L|TCF4_uc002lgc.3_Missense_Mutation_p.P219L|TCF4_uc002lfv.2_Missense_Mutation_p.P82L	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	298					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		GTTGGCAGGAGGCGTACAGGA	0.453													25	27					0	0	0.003954	0	0
TCF4	6925	broad.mit.edu	37	18	53018134	53018134	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:53018134C>T	uc002lfz.2	-	7	1082	c.470G>A	c.(469-471)CGA>CAA	p.R157Q	TCF4_uc010xdu.1_Missense_Mutation_p.R27Q|TCF4_uc010xdv.1_Missense_Mutation_p.R27Q|TCF4_uc002lfx.2_Missense_Mutation_p.R86Q|TCF4_uc010xdw.1_Missense_Mutation_p.R27Q|TCF4_uc002lfy.2_Missense_Mutation_p.R115Q|TCF4_uc010xdx.1_Missense_Mutation_p.R133Q|TCF4_uc010dph.1_Missense_Mutation_p.R157Q|TCF4_uc010xdy.1_Missense_Mutation_p.R133Q|TCF4_uc002lga.2_Missense_Mutation_p.R259Q|TCF4_uc010dpi.2_Missense_Mutation_p.R157Q|TCF4_uc002lgc.3_Missense_Mutation_p.R78Q	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	157					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		AGGCCTCCTTCGGGGATTATT	0.428													36	26					0	0	0.008740	0	0
ALPK2	115701	broad.mit.edu	37	18	56191279	56191279	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:56191279G>A	uc002lhj.3	-	7	5731	c.5517C>T	c.(5515-5517)TCC>TCT	p.S1839S		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1839	Ig-like 2.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						AGGAAACAGTGGAGTTGTCCC	0.428													26	19					0	0	0.006320	0	0
PHLPP1	23239	broad.mit.edu	37	18	60497326	60497326	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:60497326C>T	uc002lis.2	+	3	277	c.99C>T	c.(97-99)GTC>GTT	p.V33V		NM_194449	NP_919431	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein	545	PH.				apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity				0						TGTATAATGTCCGTAAAGGCA	0.438													10	15					0	0	0.000978	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471868	61471868	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:61471868G>A	uc002ljl.2	+	8	1238	c.1142G>A	c.(1141-1143)TGA>TAA	p.*381*	SERPINB7_uc002ljm.2_Silent_p.*381*|SERPINB7_uc010xet.1_Silent_p.*364*|SERPINB7_uc010dqg.2_Silent_p.*381*	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	381					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				TCTTGCCCTTGAAAATCCAAT	0.403													25	27					0	0	0.005443	0	0
SERPINB2	5055	broad.mit.edu	37	18	61570138	61570138	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:61570138G>A	uc010xeu.1	+	9	1180	c.847G>A	c.(847-849)GAA>AAA	p.E283K	SERPINB2_uc002ljo.2_Missense_Mutation_p.E283K|SERPINB2_uc010dqh.2_Missense_Mutation_p.E213K|SERPINB2_uc002ljp.1_Missense_Mutation_p.E88K|SERPINB2_uc002ljq.1_Missense_Mutation_p.E88K	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	283					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	tttgCAGCTGGAAAGTGAAAT	0.289													6	13					0	0	0.001168	0	0
CDH7	1005	broad.mit.edu	37	18	63481762	63481762	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:63481762C>T	uc002ljz.2	+	4	872	c.547C>T	c.(547-549)CCT>TCT	p.P183S	CDH7_uc002lka.2_Missense_Mutation_p.P183S|CDH7_uc002lkb.2_Missense_Mutation_p.P183S	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	183	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				TGCTGATGATCCTACATATGG	0.428													39	53					0	0	0.002852	0	0
CNDP1	84735	broad.mit.edu	37	18	72228156	72228156	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:72228156G>A	uc002llq.2	+	4	580	c.369G>A	c.(367-369)ACG>ACA	p.T123T	uc002llr.2_5'Flank	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	123					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		GCGATCCCACGAAAGGCACCG	0.577													50	57					0	0	0.003610	0	0
ZNF236	7776	broad.mit.edu	37	18	74617298	74617298	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:74617298C>T	uc002lmi.2	+	13	2416	c.2218C>T	c.(2218-2220)CCC>TCC	p.P740S	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	740					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		CGACCTTCGTCCCTATATGTG	0.433													21	13					0	0	0.002299	0	0
GALR1	2587	broad.mit.edu	37	18	74968116	74968116	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:74968116C>T	uc002lms.3	+	2	1166	c.669C>T	c.(667-669)GTC>GTT	p.V223V		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	223	Cytoplasmic (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		TCTTTCAGGTCCTTAATCACT	0.343													28	48					0	0	0.003755	0	0
SALL3	27164	broad.mit.edu	37	18	76752241	76752241	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:76752241G>A	uc002lmt.2	+	2	250	c.250G>A	c.(250-252)GAG>AAG	p.E84K	SALL3_uc010dra.2_5'Flank	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	84					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GATCGTGCACGAGGACGCGCC	0.721													9	9					0	0	0.008291	0	0
ATP9B	374868	broad.mit.edu	37	18	77137262	77137262	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:77137262C>T	uc002lmx.2	+	30	3337	c.3323C>T	c.(3322-3324)ACC>ATC	p.T1108I	ATP9B_uc002lmw.1_Missense_Mutation_p.T1097I|ATP9B_uc002lna.2_Missense_Mutation_p.T123I|ATP9B_uc010drb.2_RNA	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	1108	Helical; (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		GCCTTTATCACCACCGTGACC	0.577													41	57					0	0	0.003610	0	0
MED16	10025	broad.mit.edu	37	19	885838	885838	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:885838G>A	uc002lqd.1	-	5	962	c.811C>T	c.(811-813)CTC>TTC	p.L271F	MED16_uc010drw.1_Missense_Mutation_p.L96F|MED16_uc002lqe.2_Missense_Mutation_p.L260F|MED16_uc002lqf.2_Missense_Mutation_p.L260F|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Missense_Mutation_p.L260F|MED16_uc010xfx.1_Intron|MED16_uc010xfy.1_Intron	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	271					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGCGGTTGAGGTCGGTGGTG	0.632													16	30					0	0	0.006122	0	0
PCSK4	54760	broad.mit.edu	37	19	1489865	1489865	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:1489865C>T	uc002ltb.1	-	2	283	c.221G>A	c.(220-222)CGG>CAG	p.R74Q	PCSK4_uc002lta.2_5'UTR|REEP6_uc010xgp.1_5'Flank|REEP6_uc002ltc.2_5'Flank	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	74					proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCCCGGTGCCGCAGGTGAAA	0.692													5	5					0	0	0.000602	0	0
DOT1L	84444	broad.mit.edu	37	19	2216683	2216683	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:2216683C>T	uc002lvb.3	+	20	2363	c.2327C>T	c.(2326-2328)CCG>CTG	p.P776L	DOT1L_uc002lvc.1_Missense_Mutation_p.P70L|uc002lvd.1_5'Flank|DOT1L_uc002lve.1_Missense_Mutation_p.P70L	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	776						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGCTGTCCCCGGCCAAGATT	0.692													26	23					0	0	0.009535	0	0
SF3A2	8175	broad.mit.edu	37	19	2247835	2247835	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:2247835G>A	uc002lvg.2	+	9	807	c.685G>A	c.(685-687)GGG>AGG	p.G229R	AMH_uc002lvh.2_5'Flank|hsa-mir-4321|MI0015852_5'Flank	NM_007165	NP_009096	Q15428	SF3A2_HUMAN	splicing factor 3a, subunit 2	229	Pro-rich.				nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex	nucleic acid binding|zinc ion binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGCCCCCCTGGGGTGAAGCG	0.667													29	20					0	0	0.009535	0	0
THOP1	7064	broad.mit.edu	37	19	2785668	2785668	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:2785668C>T	uc002lwj.2	+	1	163	c.8C>T	c.(7-9)CCC>CTC	p.P3L	SGTA_uc002lwi.1_5'Flank	NM_003249	NP_003240	P52888	THOP1_HUMAN	thimet oligopeptidase 1	3					proteolysis	cytoplasm	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCATGAAGCCCCCCGCAGGT	0.587													3	8					0	0	0.000602	0	0
TBXA2R	6915	broad.mit.edu	37	19	3600130	3600130	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:3600130A>T	uc002lyg.1	-	2	717	c.503T>A	c.(502-504)CTG>CAG	p.L168Q	TBXA2R_uc002lye.1_Intron	NM_001060	NP_001051	P21731	TA2R_HUMAN	thromboxane A2 receptor isoform alpha	168	Helical; Name=4; (Potential).				platelet activation	integral to plasma membrane	guanyl-nucleotide exchange factor activity|protein binding|thromboxane A2 receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)	Ridogrel(DB01207)	CACGCCCAGCAGGGGCAGCAG	0.761													7	9					0	0	0.001984	0	0
PTPRS	5802	broad.mit.edu	37	19	5244244	5244245	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:5244244_5244245GG>AA	uc002mbv.2	-	11	1471_1472	c.1237_1238CC>TT	c.(1237-1239)CCC>TTC	p.P413F	PTPRS_uc002mbu.1_Missense_Mutation_p.P400F|PTPRS_uc010xin.1_Missense_Mutation_p.P400F|PTPRS_uc002mbw.2_Missense_Mutation_p.P400F|PTPRS_uc002mbx.2_Missense_Mutation_p.P404F|PTPRS_uc002mby.2_Missense_Mutation_p.P400F	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	413	Fibronectin type-III 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GGACTCGCTGGGGGGCCCCTGG	0.678													18	22					0	0	0.004672	0	0
FUT6	2528	broad.mit.edu	37	19	5832373	5832373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:5832373C>T	uc002mdf.1	-	4	732	c.206G>A	c.(205-207)TGG>TAG	p.W69*	FUT6_uc002mdg.1_Nonsense_Mutation_p.W69*|FUT6_uc002mdh.1_Nonsense_Mutation_p.W69*|FUT6_uc010dul.1_Nonsense_Mutation_p.W69*	NM_001040701	NP_001035791	P51993	FUT6_HUMAN	fucosyltransferase 6	69	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						GTTAAAAGGCCACGTCCACAG	0.602													15	28					0	0	0.003163	0	0
RANBP3	8498	broad.mit.edu	37	19	5932511	5932511	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:5932511G>A	uc002mdw.2	-	7	744	c.517C>T	c.(517-519)CGC>TGC	p.R173C	RANBP3_uc002mdv.2_5'UTR|RANBP3_uc002mdx.2_Missense_Mutation_p.R173C|RANBP3_uc002mdy.2_Missense_Mutation_p.R105C|RANBP3_uc002mdz.2_Missense_Mutation_p.R105C|RANBP3_uc010duq.2_Missense_Mutation_p.R83C|RANBP3_uc002mea.2_Missense_Mutation_p.R45C|RANBP3_uc010xix.1_Missense_Mutation_p.R45C	NM_007322	NP_015561	Q9H6Z4	RANB3_HUMAN	RAN binding protein 3 isoform RANBP3-d	173					intracellular transport|protein transport	cytoplasm|nucleus	Ran GTPase binding			breast(1)	1						ACTGCCGGGCGAAGCACGCTC	0.667													35	50					0	0	0.006999	0	0
MCOLN1	57192	broad.mit.edu	37	19	7595174	7595174	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:7595174C>T	uc002mgo.2	+	12	1487	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F	MCOLN1_uc002mgp.2_Silent_p.F419F	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	454					calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						TCTGGCAGTTCCGCTCACTCT	0.647													50	59					0	0	0.003610	0	0
EVI5L	115704	broad.mit.edu	37	19	7911465	7911465	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:7911465C>T	uc002min.2	+	2	191	c.37C>T	c.(37-39)CAG>TAG	p.Q13*	EVI5L_uc010xjz.1_Nonsense_Mutation_p.Q13*	NM_145245	NP_660288	Q96CN4	EVI5L_HUMAN	ecotropic viral integration site 5-like isoform	13						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						CTCCTCATCCCAGGAGGCCCT	0.652													21	17					0	0	0.002780	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8650481	8650481	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:8650481C>T	uc002mkj.1	-	23	2998	c.2724G>A	c.(2722-2724)TCG>TCA	p.S908S	ADAMTS10_uc002mki.1_Silent_p.S395S|ADAMTS10_uc002mkk.1_Silent_p.S540S	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	908	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GGCACACGACCGAGCGGCTGC	0.682													8	11					0	0	0.004482	0	0
MBD3L1	85509	broad.mit.edu	37	19	8953751	8953751	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:8953751C>T	uc002mko.2	+	1	483	c.397C>T	c.(397-399)CCT>TCT	p.P133S		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	133					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GGAGATAATTCCTGCAGAGGG	0.522													17	11					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9047536	9047536	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:9047536G>A	uc002mkp.2	-	5	34299	c.34095C>T	c.(34093-34095)ACC>ACT	p.T11365T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11367	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATAATTAGGGGTTGTCCTGG	0.493													79	100					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9065829	9065829	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:9065829G>A	uc002mkp.2	-	3	21821	c.21617C>T	c.(21616-21618)TCC>TTC	p.S7206F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7208	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGGCTTTGGATGTCTCTGA	0.488													74	90					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9069395	9069395	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:9069395C>T	uc002mkp.2	-	3	18255	c.18051G>A	c.(18049-18051)GGG>GGA	p.G6017G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6019	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATTGGTGGTCCCCATATTGG	0.458													81	132					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9074546	9074547	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:9074546_9074547CT>TA	uc002mkp.2	-	3	13103_13104	c.12899_12900AG>TA	c.(12898-12900)GAG>GTA	p.E4300V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4302	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGACACTGTCTCAATCTCTGT	0.515													17	23					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9076958	9076958	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:9076958C>T	uc002mkp.2	-	3	10692	c.10488G>A	c.(10486-10488)GAG>GAA	p.E3496E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3497	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCTCAGAGTCTCAAGCCCTA	0.517													29	35					0	0	0.006320	0	0
MUC16	94025	broad.mit.edu	37	19	9091108	9091108	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:9091108G>A	uc002mkp.2	-	1	911	c.707C>T	c.(706-708)TCC>TTC	p.S236F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	236	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCAAGGAAGGAAGAATAAAG	0.463													33	40					0	0	0.002096	0	0
ZNF317	57693	broad.mit.edu	37	19	9267342	9267342	+	Missense_Mutation	SNP	C	T	T	rs141551247		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:9267342C>T	uc002mku.2	+	3	355	c.80C>T	c.(79-81)TCA>TTA	p.S27L	ZNF317_uc010xkm.1_Silent_p.F68F|ZNF317_uc002mkv.2_5'UTR|ZNF317_uc002mkw.2_Missense_Mutation_p.S27L|ZNF317_uc002mkx.2_5'UTR|ZNF317_uc002mky.2_5'UTR	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	27					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCTGTTTCTTCAAAAGACCAT	0.527													69	83					0	0	0.003610	0	0
OR7D4	125958	broad.mit.edu	37	19	9324610	9324610	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:9324610C>T	uc002mla.1	-	1	904	c.904G>A	c.(904-906)GAA>AAA	p.E302K		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGGAGTCTTTCCAGGGCCCCC	0.552													33	22					0	0	0.005524	0	0
ZNF559	84527	broad.mit.edu	37	19	9453349	9453349	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:9453349C>T	uc002mlg.2	+	7	1869	c.1222C>T	c.(1222-1224)CCC>TCC	p.P408S	ZNF559_uc002mlf.2_Missense_Mutation_p.P177S|ZNF559_uc010dwl.1_Missense_Mutation_p.P177S|ZNF559_uc010xkn.1_Missense_Mutation_p.P400S|ZNF559_uc010dwm.1_3'UTR|ZNF559_uc002mle.3_Missense_Mutation_p.P472S|ZNF559_uc010dwk.1_Missense_Mutation_p.P177S|ZNF559_uc002mld.2_3'UTR|ZNF559_uc010dwo.1_Intron|ZNF177_uc002mli.2_Intron|ZNF177_uc002mlj.2_Intron	NM_032497	NP_115886	Q9BR84	ZN559_HUMAN	zinc finger protein 559	408					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGGTGTAAAACCCTATGACTG	0.408													21	43					0	0	0.001882	0	0
COL5A3	50509	broad.mit.edu	37	19	10078597	10078597	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:10078597C>T	uc002mmq.1	-	61	4473	c.4387G>A	c.(4387-4389)GGC>AGC	p.G1463S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1463	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCTTTTGAGCCTTTCTGTCCT	0.587													35	47					0	0	0.004878	0	0
COL5A3	50509	broad.mit.edu	37	19	10116815	10116815	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:10116815C>T	uc002mmq.1	-	2	267	c.181G>A	c.(181-183)GGT>AGT	p.G61S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	61	TSP N-terminal.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GCCCGGTCACCCTCTGGAGTC	0.652													15	8					0	0	0.004007	0	0
PDE4A	5141	broad.mit.edu	37	19	10578119	10578119	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:10578119C>T	uc002moj.2	+	15	2591	c.2483C>T	c.(2482-2484)TCT>TTT	p.S828F	PDE4A_uc002mok.2_Missense_Mutation_p.S802F|PDE4A_uc002mol.2_Missense_Mutation_p.S767F|PDE4A_uc002mom.2_Missense_Mutation_p.S589F|PDE4A_uc002mon.2_Missense_Mutation_p.S283F|PDE4A_uc002moo.2_3'UTR	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	828					signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	AGGACCCTGTCTGTTTCAGAG	0.662													46	60					0	0	0.003610	0	0
LOC55908	55908	broad.mit.edu	37	19	11348821	11348822	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:11348821_11348822GG>AA	uc010dxx.2	+	1	5_6	c.3_4GG>AA	c.(1-6)ATGGGG>ATAAGG	p.1_2MG>IR	DOCK6_uc010xlq.1_5'Flank|DOCK6_uc002mqs.3_Intron|LOC55908_uc010dxw.2_Intron	NM_018687	NP_061157	Q6UXH0	TD26_HUMAN	hepatocellular carcinoma-associated gene TD26	Error:Variant_position_missing_in_Q6UXH0_after_alignment						extracellular region					0						AGGGACCCATGGGGGATGCCCT	0.604													33	31					0	0	0.004672	0	0
ELAVL3	1995	broad.mit.edu	37	19	11576999	11576999	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:11576999C>T	uc002mry.1	-	3	701	c.321G>A	c.(319-321)ACG>ACA	p.T107T	ELAVL3_uc002mrx.1_Silent_p.T107T	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	107	RRM 1.				cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						TGATGGTCTTCGTCTGTAATT	0.572													22	22					0	0	0.002299	0	0
ZNF700	90592	broad.mit.edu	37	19	12060579	12060579	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:12060579A>G	uc002msu.2	+	4	1866	c.1740A>G	c.(1738-1740)CGA>CGG	p.R580R	ZNF700_uc010xme.1_Silent_p.R598R|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	580	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACACCTTCGAATGCATGAAA	0.468													3	115					0	0	0.004672	0	0
ZNF44	51710	broad.mit.edu	37	19	12385791	12385791	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:12385791G>A	uc010xmj.1	-	4	537	c.332C>T	c.(331-333)CCA>CTA	p.P111L	ZNF44_uc002mtl.2_RNA|ZNF44_uc010dyr.1_Intron|ZNF44_uc010xmi.1_RNA|ZNF44_uc002mtn.3_RNA|ZNF44_uc010dys.2_Missense_Mutation_p.P63L	NM_001164276	NP_001157748	P15621	ZNF44_HUMAN	zinc finger protein 44 isoform 1	111	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1		Renal(1328;0.157)		GBM - Glioblastoma multiforme(1328;0.0164)|Lung(535;0.179)		AAATTACCTTGGATTTCTCCT	0.343													13	19					0	0	0.004007	0	0
ZNF799	90576	broad.mit.edu	37	19	12502508	12502508	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:12502508G>A	uc010dyt.2	-	4	854	c.704C>T	c.(703-705)TCT>TTT	p.S235F	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	235	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						ACTGTAAAAAGAAAAGGCTTT	0.383													57	72					0	0	0.003610	0	0
ZNF490	57474	broad.mit.edu	37	19	12692182	12692182	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:12692182G>A	uc002mtz.2	-	5	836	c.707C>T	c.(706-708)TCC>TTC	p.S236F		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	236	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTTCGAAAGGAAAAGAGAAA	0.433													22	23					0	0	0.010504	0	0
SYCE2	256126	broad.mit.edu	37	19	13015451	13015451	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:13015451C>T	uc002mvr.2	-	3	176	c.161G>A	c.(160-162)GGG>GAG	p.G54E		NM_001105578	NP_001099048	Q6PIF2	SYCE2_HUMAN	synaptonemal complex central element protein 2	54					cell division	central element					0						TCCCGACTTCCCTTCCAGGAC	0.493													55	64					0	0	0.003610	0	0
C19orf57	79173	broad.mit.edu	37	19	14000427	14000427	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:14000427G>A	uc002mxl.1	-	6	1301	c.1242C>T	c.(1240-1242)GGC>GGT	p.G414G	C19orf57_uc002mxk.1_Silent_p.G296G|C19orf57_uc002mxm.1_Intron	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	414					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			AGGCTGTAGGGCCCACTAGGA	0.642													13	11					0	0	0.001368	0	0
RFX1	5989	broad.mit.edu	37	19	14074027	14074027	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:14074027G>A	uc002mxv.2	-	19	2903	c.2631C>T	c.(2629-2631)CTC>CTT	p.L877L		NM_002918	NP_002909	P22670	RFX1_HUMAN	regulatory factor X1	877	Necessary for dimerization.				immune response	nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			lung(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.67e-23)			GCAGCCGGATGAGGTGGAAGG	0.667													11	21					0	0	0.000978	0	0
OR7A10	390892	broad.mit.edu	37	19	14952516	14952516	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:14952516G>A	uc002mzx.1	-	1	174	c.174C>T	c.(172-174)CCC>CCT	p.P58P		NM_001005190	NP_001005190	O76100	OR7AA_HUMAN	olfactory receptor, family 7, subfamily A,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					AGAAGTACATGGGGGTGTGGA	0.522													19	42					0	0	0.001882	0	0
OR7C2	26658	broad.mit.edu	37	19	15052942	15052942	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:15052942C>T	uc010xoc.1	+	1	642	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					TCTGTGGAATCCTATTCTCTT	0.473													29	41					0	0	0.006320	0	0
SLC1A6	6511	broad.mit.edu	37	19	15072875	15072875	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:15072875G>A	uc002naa.1	-	5	882	c.874C>T	c.(874-876)CTC>TTC	p.L292F	SLC1A6_uc010dzu.1_Missense_Mutation_p.L292F|SLC1A6_uc010xod.1_Missense_Mutation_p.L228F|SLC1A6_uc002nab.2_Missense_Mutation_p.L292F|SLC1A6_uc002nac.2_Missense_Mutation_p.L292F	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	292					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	AAGTCCCTGAGGACTCTGCCC	0.582													49	44					0	0	0.003610	0	0
CYP4F12	66002	broad.mit.edu	37	19	15791299	15791299	+	Silent	SNP	G	A	A	rs141478890		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:15791299G>A	uc002nbl.2	+	5	556	c.495G>A	c.(493-495)ACG>ACA	p.T165T	CYP4F12_uc010xoo.1_Silent_p.T165T|CYP4F12_uc010xop.1_3'UTR	NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,									p.T165T(1)		skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CCTATATAACGATCTTCAACA	0.493													14	32					0	0	0.003163	0	0
OR10H3	26532	broad.mit.edu	37	19	15853087	15853087	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:15853087G>A	uc010xoq.1	+	1	885	c.885G>A	c.(883-885)AGG>AGA	p.R295R		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCAGTCTAAGGAACAAGGAGC	0.438													70	82					0	0	0.003610	0	0
CYP4F11	57834	broad.mit.edu	37	19	16038149	16038149	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:16038149C>T	uc002nbu.2	-	5	434	c.398G>A	c.(397-399)GGG>GAG	p.G133E	CYP4F11_uc010eab.1_Missense_Mutation_p.G133E|CYP4F11_uc002nbt.2_Missense_Mutation_p.G133E	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	133					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GAGCCCATCCCCTGGCAGGGC	0.552													53	61					0	0	0.003610	0	0
IFI30	10437	broad.mit.edu	37	19	18285849	18285849	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:18285849G>A	uc002nic.1	+	2	206	c.133_splice	c.e2-1	p.T45_splice	PIK3R2_uc002nib.1_Splice_Site	NM_006332	NP_006323	P13284	GILT_HUMAN	interferon, gamma-inducible protein 30						antigen processing and presentation of exogenous peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway	cell junction|extracellular region|lysosome	oxidoreductase activity, acting on a sulfur group of donors				0						CTAATCCACAGACAGGCAATC	0.572													12	13					0	0	0.002450	0	0
KLHL26	55295	broad.mit.edu	37	19	18779689	18779689	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:18779689G>A	uc002njz.1	+	3	1509	c.1482G>A	c.(1480-1482)ATG>ATA	p.M494I		NM_018316	NP_060786	Q53HC5	KLH26_HUMAN	kelch-like 26	494	Kelch 4.									ovary(1)	1						AGGCGCCCATGAGCGAACCCC	0.672													28	23					0	0	0.009535	0	0
CILP2	148113	broad.mit.edu	37	19	19654542	19654542	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:19654542C>T	uc002nmv.3	+	8	1273	c.1188C>T	c.(1186-1188)CTC>CTT	p.L396L	CILP2_uc002nmw.3_Silent_p.L402L	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	396						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						TGATCAAGCTCCCTGAGGACT	0.667													81	86					0	0	0.003610	0	0
CILP2	148113	broad.mit.edu	37	19	19655605	19655605	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:19655605C>T	uc002nmv.3	+	8	2336	c.2251C>T	c.(2251-2253)CCC>TCC	p.P751S	CILP2_uc002nmw.3_Missense_Mutation_p.P757S	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	751						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CAAGTTCACCCCCAGCGAGCA	0.687													5	14					0	0	0.001168	0	0
ZNF101	94039	broad.mit.edu	37	19	19790253	19790253	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:19790253C>T	uc002nni.1	+	4	565	c.455C>T	c.(454-456)TCC>TTC	p.S152F	ZNF101_uc010ecg.1_Missense_Mutation_p.S32F|ZNF101_uc002nnj.1_Missense_Mutation_p.S32F	NM_033204	NP_149981	Q8IZC7	ZN101_HUMAN	zinc finger protein 101	152					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GCCTCCATTTCCCCCAGTAGT	0.493													35	61					0	0	0.006230	0	0
ZNF682	91120	broad.mit.edu	37	19	20117432	20117432	+	Silent	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:20117432C>A	uc002noq.2	-	4	1002	c.879G>T	c.(877-879)GCG>GCT	p.A293A	ZNF682_uc002noo.2_Silent_p.A261A|ZNF682_uc002nop.2_Silent_p.A261A|ZNF682_uc010eck.2_Silent_p.A217A	NM_033196	NP_149973	O95780	ZN682_HUMAN	zinc finger protein 682 isoform 1	293	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						GCCGGTTAAACGCTCTGCCAC	0.408													32	48					1.66425e-11	2.63634e-11	0.004878	1	0
ZNF429	353088	broad.mit.edu	37	19	21719375	21719375	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:21719375C>T	uc002nqd.1	+	4	657	c.520C>T	c.(520-522)CAG>TAG	p.Q174*	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	174	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GAAACCTTTCCAGTGTAAAAA	0.313													20	33					0	0	0.007413	0	0
ZNF43	7594	broad.mit.edu	37	19	21990847	21990847	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:21990847G>A	uc002nqj.2	-	4	2122	c.1992C>T	c.(1990-1992)ACC>ACT	p.T664T	ZNF43_uc010ecv.2_Silent_p.T658T|ZNF43_uc002nql.2_Silent_p.T658T|ZNF43_uc002nqm.2_Silent_p.T658T|ZNF43_uc002nqk.2_Silent_p.T594T	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	664	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		GTTTAGTAAGGGTTGAGGACC	0.368													29	44					0	0	0.002836	0	0
Unknown	0	broad.mit.edu	37	19	22784257	22784257	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:22784257G>A	uc002nqu.3	+	6		c.691G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		TCACTCAGAGGAAGAGGAGGG	0.493													4	8					0	0	0.009096	0	0
ZNF99	7652	broad.mit.edu	37	19	22941304	22941304	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:22941304T>G	uc010xrh.1	-	5	1134	c.1134A>C	c.(1132-1134)AGA>AGC	p.R378S		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTCATGTTTTCTAAGGGCTG	0.353													25	36					0	0	0.003954	0	0
ZNF681	148213	broad.mit.edu	37	19	23927908	23927908	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:23927908C>T	uc002nrk.3	-	4	586	c.444G>A	c.(442-444)ATG>ATA	p.M148I	ZNF681_uc002nrl.3_Missense_Mutation_p.M79I|ZNF681_uc002nrj.3_Missense_Mutation_p.M79I	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	148	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				GAAAGATTTTCATATATTTAT	0.289													7	15					0	0	0.003080	0	0
SCGBL	284402	broad.mit.edu	37	19	35085245	35085245	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:35085245G>A	uc002nvn.2	-	2	103	c.81C>T	c.(79-81)ATC>ATT	p.I27I		NM_001025591	NP_001020762	Q4G0G5	SCGBL_HUMAN	secretoglobin-like precursor	27						extracellular region	binding				0						GCAGTTTATCGATATCCAGGC	0.517													39	32					0	0	0.002522	0	0
MLL4	9757	broad.mit.edu	37	19	36211154	36211154	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:36211154C>T	uc010eei.2	+	3	905	c.905C>T	c.(904-906)CCC>CTC	p.P302L		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	302					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGTGGGCTCCCCTTTGTGATC	0.587													10	12					0	0	0.008291	0	0
ZNF382	84911	broad.mit.edu	37	19	37118187	37118187	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:37118187C>T	uc002oek.2	+	5	1501	c.1388C>T	c.(1387-1389)CCC>CTC	p.P463L	ZNF382_uc010efa.2_Missense_Mutation_p.P414L|ZNF382_uc010efb.2_Missense_Mutation_p.P462L|ZNF382_uc002oel.2_Missense_Mutation_p.P462L	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	463	Required for transcriptional repression activity; probably mediates sequence- specific DNA-binding (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			GGGGAAAAACCCTATATTTGT	0.453													21	13					0	0	0.002299	0	0
ZNF527	84503	broad.mit.edu	37	19	37870132	37870132	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:37870132G>C	uc010efk.1	+	3	255	c.144G>C	c.(142-144)AGG>AGC	p.R48S	ZNF527_uc002ogf.3_Missense_Mutation_p.R48S|ZNF527_uc010xtq.1_RNA|ZNF527_uc002oge.2_Missense_Mutation_p.R48S	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	48	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGAACTACAGGAACTTGGTAT	0.428													34	45					0	0	0.003610	0	0
RYR1	6261	broad.mit.edu	37	19	38951133	38951133	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:38951133G>A	uc002oit.2	+	20	2609	c.2479G>A	c.(2479-2481)GAG>AAG	p.E827K	RYR1_uc002oiu.2_Missense_Mutation_p.E827K	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	827	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACCCATCAAGGAGTATCGACG	0.637													32	53					0	0	0.002445	0	0
PAF1	54623	broad.mit.edu	37	19	39877418	39877418	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:39877418C>T	uc002old.2	-	12	1183	c.1008G>A	c.(1006-1008)CGG>CGA	p.R336R	PAF1_uc002ole.1_Silent_p.R326R|PAF1_uc010xuv.1_RNA	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	336					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			CAGCCTTGGCCCGGCGCTTAC	0.572													27	41					0	0	0.007291	0	0
FCGBP	8857	broad.mit.edu	37	19	40363084	40363084	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:40363084C>T	uc002omp.3	-	32	14994	c.14986G>A	c.(14986-14988)GAC>AAC	p.D4996N		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4996	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGGACAAAGTCGTCACTCCAG	0.642													7	17					0	0	0.003080	0	0
SPTBN4	57731	broad.mit.edu	37	19	41066103	41066103	+	Silent	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:41066103G>C	uc002ony.2	+	27	5795	c.5709G>C	c.(5707-5709)ACG>ACC	p.T1903T	SPTBN4_uc002onx.2_Silent_p.T1903T|SPTBN4_uc002onz.2_Silent_p.T1903T|SPTBN4_uc010egx.2_Silent_p.T646T|SPTBN4_uc002ooa.2_Silent_p.T579T	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1903	Spectrin 16.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AGCTGCGGACGGTGTATGCGG	0.701													3	47					0	0	0.009096	0	0
CYP2A13	1553	broad.mit.edu	37	19	41594891	41594891	+	Missense_Mutation	SNP	G	A	A	rs147576381	by1000genomes	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:41594891G>A	uc002opt.2	+	2	247	c.238G>A	c.(238-240)GTG>ATG	p.V80M		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	80					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	GCGGGTCGTGGTGCTGTGCGG	0.637													31	32					0	0	0.009718	0	0
CEACAM7	1087	broad.mit.edu	37	19	42181356	42181356	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:42181356C>T	uc002ori.1	-	4	784	c.782G>A	c.(781-783)GGG>GAG	p.G261E	CEACAM7_uc010ehx.2_Missense_Mutation_p.G261E|CEACAM7_uc010ehy.1_Missense_Mutation_p.G168E	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	261						anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		CAGAGCCATCCCAGCCAGTAC	0.483													20	34					0	0	0.010504	0	0
CEACAM8	1088	broad.mit.edu	37	19	43097973	43097973	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:43097973C>T	uc002oud.2	-	2	246	c.144G>A	c.(142-144)GGG>GGA	p.G48G	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	48	Ig-like V-type.				immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				GAACCTCCTTCCCCTCTGCAG	0.537													53	89					0	0	0.003610	0	0
PSG8	440533	broad.mit.edu	37	19	43259341	43259341	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:43259341C>T	uc002ouo.2	-	4	885	c.787G>A	c.(787-789)GAA>AAA	p.E263K	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_Intron|PSG8_uc002oui.2_Missense_Mutation_p.E102K|PSG8_uc002ouh.2_Missense_Mutation_p.E263K|PSG8_uc010ein.2_Missense_Mutation_p.E141K|PSG8_uc002ouj.3_Missense_Mutation_p.E45K|PSG8_uc002ouk.3_Missense_Mutation_p.E102K|PSG8_uc002oul.3_Missense_Mutation_p.E263K|PSG8_uc002oum.3_Missense_Mutation_p.E170K|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.E170K	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	263	Ig-like C2-type 2.					extracellular region					0		Prostate(69;0.00899)				CTCTTAGGTTCACAGGTGAAG	0.473													100	89					0	0	0.003610	0	0
PSG5	5673	broad.mit.edu	37	19	43679591	43679591	+	Missense_Mutation	SNP	G	A	A	rs144866823		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:43679591G>A	uc002ovu.2	-	4	871	c.740C>T	c.(739-741)TCA>TTA	p.S247L	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Missense_Mutation_p.S122L|PSG5_uc002ovx.2_Missense_Mutation_p.S247L|PSG5_uc002ovv.2_Missense_Mutation_p.S340L|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	247	Ig-like C2-type 2.				female pregnancy	extracellular region		p.S247L(1)		skin(3)	3		Prostate(69;0.00899)				ATAGGTGAATGAAGGGTAAAT	0.483													88	106					0	0	0.003610	0	0
PSG9	5678	broad.mit.edu	37	19	43772155	43772155	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:43772155C>T	uc002owd.3	-	2	310	c.211G>A	c.(211-213)GAA>AAA	p.E71K	PSG9_uc002owe.3_Missense_Mutation_p.E71K|PSG9_uc010xwm.1_Missense_Mutation_p.E71K|PSG9_uc002owf.3_Missense_Mutation_p.E71K|PSG9_uc002owg.2_Missense_Mutation_p.E71K|PSG9_uc002owh.2_Missense_Mutation_p.E71K	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	71	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TCCGTCATTTCCCCTTTGTAC	0.413													94	89					0	0	0.003610	0	0
PSG9	5678	broad.mit.edu	37	19	43772255	43772255	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:43772255C>T	uc002owd.3	-	2	210	c.111G>A	c.(109-111)ACG>ACA	p.T37T	PSG9_uc002owe.3_Silent_p.T37T|PSG9_uc010xwm.1_Silent_p.T37T|PSG9_uc002owf.3_Silent_p.T37T|PSG9_uc002owg.2_Silent_p.T37T|PSG9_uc002owh.2_Silent_p.T37T	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	37	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GGGCTTCAATCGTGACTTCGG	0.483													76	87					0	0	0.003610	0	0
ZNF285	26974	broad.mit.edu	37	19	44890838	44890838	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:44890838C>T	uc002ozd.3	-	4	1656	c.1569G>A	c.(1567-1569)CGG>CGA	p.R523R	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Silent_p.R530R	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	523	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						GATCTGAATTCCGGCTGAAGC	0.413													31	34					0	0	0.002445	0	0
ZNF285	26974	broad.mit.edu	37	19	44890960	44890960	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:44890960G>A	uc002ozd.3	-	4	1534	c.1447C>T	c.(1447-1449)CCA>TCA	p.P483S	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.P490S	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	483					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						CATTTATATGGTTTTTCTCCA	0.383													35	36					0	0	0.002836	0	0
CEACAM20	125931	broad.mit.edu	37	19	45028069	45028069	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:45028069C>T	uc010ejn.1	-	3	438	c.422G>A	c.(421-423)CGA>CAA	p.R141Q	CEACAM20_uc010ejo.1_Missense_Mutation_p.R141Q|CEACAM20_uc010ejp.1_Missense_Mutation_p.R141Q|CEACAM20_uc010ejq.1_Missense_Mutation_p.R141Q	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	141	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				AAGGGCATCTCGAGCTTCACA	0.502													153	193					0	0	0.003610	0	0
CEACAM16	388551	broad.mit.edu	37	19	45207314	45207314	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:45207314G>C	uc010xxd.1	+	4	615	c.409G>C	c.(409-411)GCC>CCC	p.A137P	CEACAM16_uc002ozq.2_Missense_Mutation_p.A196P	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	137										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				CACAGTCTTGGCCAACAGCAC	0.667													22	17					0	0	0.003954	0	0
EML2	24139	broad.mit.edu	37	19	46116831	46116831	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:46116831G>A	uc002pcn.2	-	18	1827	c.1792C>T	c.(1792-1794)CAC>TAC	p.H598Y	EML2_uc002pco.2_RNA|EML2_uc002pcp.2_Missense_Mutation_p.H482Y|EML2_uc010xxl.1_Missense_Mutation_p.H745Y|EML2_uc010xxm.1_Missense_Mutation_p.H799Y	NM_012155	NP_036287	O95834	EMAL2_HUMAN	echinoderm microtubule associated protein like	598	WD 10.				sensory perception of sound|visual perception	cytoplasm|intracellular membrane-bounded organelle|microtubule|microtubule associated complex	catalytic activity|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00553)|GBM - Glioblastoma multiforme(486;0.131)|Epithelial(262;0.197)		CTAAACAGGTGAACTTTGCCA	0.577													29	34					0	0	0.002096	0	0
SYMPK	8189	broad.mit.edu	37	19	46330784	46330784	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:46330784G>A	uc002pdn.2	-	16	2410	c.2165C>T	c.(2164-2166)TCC>TTC	p.S722F	SYMPK_uc002pdo.1_Missense_Mutation_p.S722F|SYMPK_uc002pdp.1_Missense_Mutation_p.S722F	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	722					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		CTTCTCATGGGAGCTGAGGTC	0.597													20	13					0	0	0.008871	0	0
CCDC8	83987	broad.mit.edu	37	19	46914618	46914618	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:46914618C>T	uc002pep.2	-	1	2302	c.1450G>A	c.(1450-1452)GGA>AGA	p.G484R		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	484						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		GAAAAGCGTCCAGGGGTCTGG	0.612													28	27					0	0	0.006320	0	0
DACT3	147906	broad.mit.edu	37	19	47151904	47151904	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:47151904C>T	uc010ekq.2	-	4	1799	c.1725G>A	c.(1723-1725)TGG>TGA	p.W575*		NM_145056	NP_659493	Q96B18	DACT3_HUMAN	thymus expressed gene 3-like	575											0		Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000173)|all cancers(93;0.000464)|Epithelial(262;0.02)|GBM - Glioblastoma multiforme(486;0.0325)		GCTGCTGCGGCCACACGAGGC	0.692													33	29					0	0	0.009535	0	0
GRLF1	2909	broad.mit.edu	37	19	47422257	47422257	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:47422257C>T	uc010ekv.2	+	1	325	c.325C>T	c.(325-327)CGA>TGA	p.R109*		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	109					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		TCAACCTCATCGAAGCACGGC	0.498													52	68					0	0	0.003610	0	0
C5AR1	728	broad.mit.edu	37	19	47823646	47823646	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:47823646C>T	uc002pgj.1	+	2	661	c.612C>T	c.(610-612)ATC>ATT	p.I204I		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	204	Helical; Name=5; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		CCGTGGCCATCGTCCGGCTGG	0.627													41	69					0	0	0.003610	0	0
GLTSCR2	29997	broad.mit.edu	37	19	48253490	48253491	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:48253490_48253491CC>TT	uc002phm.2	+	3	369_370	c.345_346CC>TT	c.(343-348)CCCCTT>CCTTTT	p.L116F	GLTSCR2_uc002phk.2_Missense_Mutation_p.L116F|GLTSCR2_uc002phl.2_Missense_Mutation_p.L116F|GLTSCR2_uc010elj.2_Missense_Mutation_p.L116F|GLTSCR2_uc010elk.1_5'Flank	NM_015710	NP_056525	Q9NZM5	GSCR2_HUMAN	glioma tumor suppressor candidate region gene 2	116						nucleolus				central_nervous_system(1)	1		all_cancers(25;1.47e-06)|all_lung(116;6.89e-05)|all_epithelial(76;0.000108)|Lung NSC(112;0.000117)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000301)|OV - Ovarian serous cystadenocarcinoma(262;0.00031)|Epithelial(262;0.0149)|GBM - Glioblastoma multiforme(486;0.0278)		TCAAGAAACCCCTTCGGGTTGA	0.53													16	19					0	0	0.004672	0	0
SPHK2	56848	broad.mit.edu	37	19	49129386	49129386	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:49129386C>T	uc002pjr.2	+	3	644	c.278C>T	c.(277-279)CCG>CTG	p.P93L	SPHK2_uc010xzt.1_Missense_Mutation_p.P34L|SPHK2_uc002pjs.2_Missense_Mutation_p.P93L|SPHK2_uc002pjt.2_Intron|SPHK2_uc002pju.2_Missense_Mutation_p.P57L|SPHK2_uc002pjv.2_Missense_Mutation_p.P57L|SPHK2_uc002pjw.2_Missense_Mutation_p.P155L|SPHK2_uc010xzu.1_Missense_Mutation_p.P57L	NM_020126	NP_064511	Q9NRA0	SPHK2_HUMAN	sphingosine kinase 2	93	Required for binding to sulfatide and phosphoinositides and for membrane localization.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cell proliferation|sphinganine-1-phosphate biosynthetic process	cytosol|lysosomal membrane|membrane fraction	ATP binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|Ras GTPase binding|sphinganine kinase activity			lung(1)	1		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GGCCTGGTCCCGTTGGCCGAG	0.622													10	13					0	0	0.008291	0	0
BCAT2	587	broad.mit.edu	37	19	49309780	49309780	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:49309780G>A	uc002pkr.2	-	3	331	c.294C>T	c.(292-294)TCC>TCT	p.S98S	BCAT2_uc002pkp.2_Silent_p.S58S|BCAT2_uc002pkq.3_Silent_p.S58S|BCAT2_uc002pks.2_Silent_p.S58S|BCAT2_uc002pkt.2_Intron|BCAT2_uc010emh.1_Silent_p.S98S|BCAT2_uc010emi.1_Intron|BCAT2_uc002pku.1_Silent_p.S58S|BCAT2_uc010emj.1_RNA	NM_001190	NP_001181	O15382	BCAT2_HUMAN	branched chain aminotransferase 2, mitochondrial	98						mitochondrial matrix	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			ovary(1)	1		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.000366)|Epithelial(262;0.0195)|GBM - Glioblastoma multiforme(486;0.0224)	L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|Pyridoxal Phosphate(DB00114)	CCACCTGCAGGGAGTAGTGGA	0.607													28	33					0	0	0.009535	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49348810	49348810	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:49348810G>A	uc002pkx.2	-	15	2181	c.1630C>T	c.(1630-1632)CCT>TCT	p.P544S	PLEKHA4_uc002pkw.1_Missense_Mutation_p.P59S|PLEKHA4_uc010eml.2_Missense_Mutation_p.P519S	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	544						cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		TCGCCTCCAGGAGGCCGCCCC	0.577													32	35					0	0	0.003271	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49362198	49362198	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:49362198G>A	uc002pkx.2	-	8	1442	c.891C>T	c.(889-891)CCC>CCT	p.P297P	PLEKHA4_uc002pkw.1_Intron|PLEKHA4_uc010eml.2_Silent_p.P297P	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	297	Pro-rich.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GTCCTCGGCGGGGAGTAGGGG	0.662													21	31					0	0	0.001882	0	0
ZNF473	25888	broad.mit.edu	37	19	50548183	50548183	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:50548183C>T	uc002prn.2	+	5	720	c.483C>T	c.(481-483)ACC>ACT	p.T161T	ZNF473_uc002prm.2_Silent_p.T161T|ZNF473_uc010ybo.1_Silent_p.T149T	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	161					histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		CTGTGTCCACCGTTTCCACGG	0.468													28	32					0	0	0.006320	0	0
KLK6	5653	broad.mit.edu	37	19	51465129	51465129	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:51465129G>A	uc002pui.2	-	6	713	c.453C>T	c.(451-453)TTC>TTT	p.F151F	KLK6_uc010eoj.2_Intron|KLK6_uc002puh.2_Silent_p.F160F|KLK6_uc002puj.2_Silent_p.F44F|KLK6_uc010ycn.1_Silent_p.F44F|KLK6_uc002pul.2_Silent_p.F151F|KLK6_uc002pum.2_Silent_p.F44F	NM_001012964	NP_001012982	Q92876	KLK6_HUMAN	kallikrein-related peptidase 6 isoform A	151	Peptidase S1.				amyloid precursor protein metabolic process|central nervous system development|collagen catabolic process|hormone metabolic process|myelination|positive regulation of G-protein coupled receptor protein signaling pathway|protein autoprocessing|proteolysis|regulation of cell differentiation|tissue regeneration	endoplasmic reticulum|extracellular region|microsome|mitochondrion|nucleolus	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00372)|GBM - Glioblastoma multiforme(134;0.00871)		TGGTGTCAGGGAAATCACCTG	0.587													24	21					0	0	0.003954	0	0
CD33	945	broad.mit.edu	37	19	51729081	51729081	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:51729081C>T	uc002pwa.2	+	3	481	c.441C>T	c.(439-441)ATC>ATT	p.I147I	CD33_uc010eos.1_Silent_p.I147I|CD33_uc010eot.1_Silent_p.I20I|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	147	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	GGCCCAAAATCCTCATCCCTG	0.572													44	48					0	0	0.003610	0	0
CEACAM18	729767	broad.mit.edu	37	19	51984888	51984888	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:51984888G>A	uc002pwv.1	+	4	825	c.825G>A	c.(823-825)CAG>CAA	p.Q275Q		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	275						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		AGATCTTTCAGAGAAGTGAAC	0.522													16	20					0	0	0.006122	0	0
ZNF836	162962	broad.mit.edu	37	19	52663788	52663789	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:52663788_52663789GG>AA	uc010ydi.1	-	4	445_446	c.71_72CC>TT	c.(70-72)TCC>TTT	p.S24F	ZNF836_uc010ydj.1_Missense_Mutation_p.S24F	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	24	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAGGGTCCAGGGATTTCCACTC	0.441													64	68					0	0	0.004672	0	0
ZNF480	147657	broad.mit.edu	37	19	52825504	52825504	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:52825504G>A	uc010ydl.1	+	5	1071	c.1001G>A	c.(1000-1002)TGG>TAG	p.W334*	ZNF480_uc002pyv.2_Nonsense_Mutation_p.W257*|ZNF480_uc010ydm.1_Nonsense_Mutation_p.W291*|ZNF480_uc010epn.2_Nonsense_Mutation_p.W165*|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	334	C2H2-type 5; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		GCAAATCATTGGAGAATTTAT	0.388													26	36					0	0	0.003954	0	0
ZNF600	162966	broad.mit.edu	37	19	53269487	53269487	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:53269487G>A	uc002qab.3	-	3	1808	c.1522C>T	c.(1522-1524)CGT>TGT	p.R508C		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	508	C2H2-type 13.			R -> H (in Ref. 1; BAD18414).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		GACCTCAGACGGAAGGTCTTG	0.443													79	91					0	0	0.003610	0	0
ZNF320	162967	broad.mit.edu	37	19	53385134	53385134	+	Missense_Mutation	SNP	A	G	G	rs138794752		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:53385134A>G	uc002qag.2	-	4	436	c.245T>C	c.(244-246)ATT>ACT	p.I82T	ZNF320_uc010eqh.1_5'Flank|ZNF320_uc010eqi.1_Intron|ZNF320_uc002qah.2_Missense_Mutation_p.I28T|ZNF320_uc002qai.2_Missense_Mutation_p.I82T	NM_207333	NP_997216	A2RRD8	ZN320_HUMAN	zinc finger protein 320	82					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		AAATGCTCCAATGTGATAACT	0.413													68	102					0	0	0.003610	0	0
ZNF665	79788	broad.mit.edu	37	19	53667726	53667726	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:53667726G>A	uc010eqm.1	-	4	2117	c.2017C>T	c.(2017-2019)CGA>TGA	p.R673*		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	608	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TGAATTCTTCGATGTTTTGCA	0.264													12	8					0	0	0.001368	0	0
LILRB5	10990	broad.mit.edu	37	19	54760034	54760034	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:54760034G>A	uc002qex.2	-	4	638	c.527C>T	c.(526-528)TCC>TTC	p.S176F	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.S167F|LILRB5_uc002qey.2_Missense_Mutation_p.S176F|LILRB5_uc002qez.2_Intron|LILRB5_uc002qfa.1_Intron|LILRB5_uc010yes.1_Intron	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	176	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CAGGGCCTGGGATGGCCCTTT	0.552													26	28					0	0	0.005443	0	0
LILRA3	11026	broad.mit.edu	37	19	54803190	54803190	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:54803190C>T	uc002qfd.2	-	4	552	c.487G>A	c.(487-489)GAA>AAA	p.E163K	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	163	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGTGGGTGTTCATCTTCTCCT	0.577													47	46					0	0	0.003610	0	0
LILRA4	23547	broad.mit.edu	37	19	54849831	54849831	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:54849831C>T	uc002qfj.2	-	3	248	c.191G>A	c.(190-192)GGA>GAA	p.G64E	LILRA4_uc002qfi.2_5'UTR	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	64	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CATTGAGTTTCCCTCTTTATC	0.542													47	50					0	0	0.003610	0	0
LILRB1	10859	broad.mit.edu	37	19	55146569	55146569	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:55146569G>A	uc002qgj.2	+	12	1838	c.1498G>A	c.(1498-1500)GAT>AAT	p.D500N	LILRB1_uc010erp.1_Missense_Mutation_p.D115N|LILRB1_uc002qgl.2_Missense_Mutation_p.D500N|LILRB1_uc002qgk.2_Missense_Mutation_p.D501N|LILRB1_uc002qgm.2_Missense_Mutation_p.D501N|LILRB1_uc010erq.2_Missense_Mutation_p.D484N|LILRB1_uc010err.2_Intron	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	500	Cytoplasmic (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GAGAAAGGCTGATTTCCAACA	0.607										HNSCC(37;0.09)			4	10					0	0	0.006214	0	0
LILRP2	79166	broad.mit.edu	37	19	55221911	55221911	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:55221911C>T	uc002qgs.1	+	1		c.2311C>T			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GCAGACCCTCCCTCTCGGTGC	0.637													19	20					0	0	0.010504	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55294968	55294968	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:55294968G>A	uc002qhb.1	+	7	886	c.848G>A	c.(847-849)GGA>GAA	p.G283E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_5'Flank|KIR2DL3_uc010erw.1_Missense_Mutation_p.G284E|KIR2DL1_uc002qgz.1_Missense_Mutation_p.G193E|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.G309E	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	283	Cytoplasmic (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GAGTCTGCAGGAAACAGAACA	0.517													35	3					0	0	0.007835	0	0
PTPRH	5794	broad.mit.edu	37	19	55693499	55693499	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:55693499C>T	uc002qjq.2	-	19	3156	c.3083G>A	c.(3082-3084)GGA>GAA	p.G1028E	PTPRH_uc010esv.2_Missense_Mutation_p.G850E|SYT5_uc002qjm.1_5'Flank|SYT5_uc002qjp.2_5'Flank|SYT5_uc002qjn.1_5'Flank|SYT5_uc002qjo.1_5'Flank	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	1028	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		AATGAGGGTTCCTGTGCGACC	0.612													28	37					0	0	0.002096	0	0
NLRP9	338321	broad.mit.edu	37	19	56244308	56244308	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:56244308C>T	uc002qly.2	-	2	917	c.889G>A	c.(889-891)GGA>AGA	p.G297R		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	297	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TCACTGAATCCTAAGAGCTTT	0.393													27	36					0	0	0.005443	0	0
NLRP11	204801	broad.mit.edu	37	19	56300200	56300200	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:56300200C>T	uc010ygf.1	-	11	3539	c.2828G>A	c.(2827-2829)AGC>AAC	p.S943N	NLRP11_uc002qlz.2_Missense_Mutation_p.S790N|NLRP11_uc002qmb.2_Missense_Mutation_p.S844N|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	943	LRR 6.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ACAATCTGGGCTGATCAAGCT	0.338													26	23					0	0	0.009535	0	0
NLRP11	204801	broad.mit.edu	37	19	56321635	56321635	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:56321635C>T	uc010ygf.1	-	5	1052	c.341G>A	c.(340-342)GGA>GAA	p.G114E	NLRP11_uc002qlz.2_Missense_Mutation_p.G15E|NLRP11_uc002qmb.2_Missense_Mutation_p.G15E|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	114							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ATGAAATTTTCCAAAAGTGTG	0.383													16	19					0	0	0.004007	0	0
NLRP4	147945	broad.mit.edu	37	19	56363466	56363466	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:56363466C>T	uc002qmd.3	+	2	442	c.20C>T	c.(19-21)TCT>TTT	p.S7F		NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	7	DAPIN.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TCTTTCTTCTCTGATTTTGGT	0.393													55	83					0	0	0.003610	0	0
NLRP4	147945	broad.mit.edu	37	19	56390161	56390161	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:56390161T>C	uc002qmd.3	+	9	3120	c.2698T>C	c.(2698-2700)TTG>CTG	p.L900L	NLRP4_uc002qmf.2_Silent_p.L825L|NLRP4_uc010etf.2_Silent_p.L675L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	900							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TTATTGCAGGTTGGAAGAATG	0.532													6	9					0	0	0.001168	0	0
NLRP13	126204	broad.mit.edu	37	19	56443675	56443675	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:56443675C>T	uc010ygg.1	-	1	28	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	1	DAPIN.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CAGAAAAGTTCATCTTGCCCA	0.478													21	19					0	0	0.001882	0	0
NLRP5	126206	broad.mit.edu	37	19	56565005	56565005	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:56565005T>C	uc002qmj.2	+	13	3130	c.3130T>C	c.(3130-3132)TTG>CTG	p.L1044L	NLRP5_uc002qmi.2_Silent_p.L1025L	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1044	LRR 11.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTCTTGCAGGTTGGTAAAGTG	0.532													9	9					0	0	0.006214	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733044	56733044	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:56733044C>T	uc002qmq.2	-	5	1557	c.1391G>A	c.(1390-1392)GGA>GAA	p.G464E	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.G347E|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.G464E|ZSCAN5A_uc002qms.1_Missense_Mutation_p.G463E	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	464					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGGTTTCTCTCCGGAGTGGAT	0.498													28	25					0	0	0.009535	0	0
ZNF470	388566	broad.mit.edu	37	19	57088722	57088722	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:57088722G>A	uc002qnl.3	+	6	1601	c.925G>A	c.(925-927)GAG>AAG	p.E309K	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	309					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		TCATACTGGAGAGAAACCTTA	0.438													37	27					0	0	0.006230	0	0
ZIM2	23619	broad.mit.edu	37	19	57286743	57286743	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:57286743C>T	uc002qnr.2	-	11	1279	c.897G>A	c.(895-897)AAG>AAA	p.K299K	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Silent_p.K95K|ZIM2_uc010ygr.1_Silent_p.K95K|ZIM2_uc002qnq.2_Silent_p.K299K|ZIM2_uc010etp.2_Silent_p.K299K|ZIM2_uc010ygs.1_Silent_p.K299K	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	299					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		CTAGAGGATCCTTTGATTGTT	0.443													24	30					0	0	0.002299	0	0
USP29	57663	broad.mit.edu	37	19	57642176	57642176	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:57642176C>T	uc002qny.2	+	4	2489	c.2133C>T	c.(2131-2133)TCC>TCT	p.S711S		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	711					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCACTGAGTCCACCAATGGCT	0.423													17	30					0	0	0.006122	0	0
ZNF17	7565	broad.mit.edu	37	19	57931662	57931662	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr19:57931662C>T	uc002qoo.1	+	3	1033	c.802C>T	c.(802-804)CAC>TAC	p.H268Y	ZNF547_uc002qpm.3_Intron|ZNF17_uc002qop.1_Missense_Mutation_p.H270Y	NM_006959	NP_008890	P17021	ZNF17_HUMAN	zinc finger protein 17	268	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0234)|GBM - Glioblastoma multiforme(193;0.000426)|Lung(386;0.176)		CCAGAAAATTCACACTGGAGA	0.433													22	34					0	0	0.002299	0	0
SNTG2	54221	broad.mit.edu	37	2	1263153	1263153	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:1263153C>T	uc002qwq.2	+	13	1145	c.1017C>T	c.(1015-1017)TTC>TTT	p.F339F	SNTG2_uc010ewi.2_Silent_p.F212F	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	339	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		TGAGCACATTCGATTGGGTGC	0.383													27	29					0	0	0.009535	0	0
MYT1L	23040	broad.mit.edu	37	2	1926650	1926650	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:1926650C>T	uc002qxe.2	-	10	1718	c.891G>A	c.(889-891)ATG>ATA	p.M297I	MYT1L_uc002qxd.2_Missense_Mutation_p.M297I|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	297					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TGACGTAATTCATATTTCTAC	0.463													67	75					0	0	0.003610	0	0
NBAS	51594	broad.mit.edu	37	2	15519910	15519910	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:15519910G>A	uc002rcc.1	-	30	3432	c.3406C>T	c.(3406-3408)CAC>TAC	p.H1136Y	NBAS_uc010exl.1_Missense_Mutation_p.H208Y|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	1136										ovary(2)|liver(1)|skin(1)	4						CCAGCCAGGTGGATGTTTTCA	0.448													42	57					0	0	0.003214	0	0
APOB	338	broad.mit.edu	37	2	21228558	21228558	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:21228558C>T	uc002red.2	-	26	11310	c.11182G>A	c.(11182-11184)GAT>AAT	p.D3728N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3728				D -> N (in Ref. 24; AAA51742).	cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGAATTTATCAGCCAAAACT	0.413													252	292					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21236264	21236264	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:21236264G>A	uc002red.2	-	25	4112	c.3984C>T	c.(3982-3984)TTC>TTT	p.F1328F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1328					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGGCAGATGGAATCCCACAG	0.468													187	246					0	0	0.003610	0	0
KIF3C	3797	broad.mit.edu	37	2	26203482	26203482	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:26203482C>T	uc002rgu.2	-	1	1962	c.1305G>A	c.(1303-1305)GAG>GAA	p.E435E	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Silent_p.E435E	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	435	Potential.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGTTGTCATCCTCCTCTTCTG	0.632													37	43					0	0	0.008740	0	0
OTOF	9381	broad.mit.edu	37	2	26691317	26691317	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:26691317C>T	uc002rhk.2	-	33	4176	c.4049G>A	c.(4048-4050)GGA>GAA	p.G1350E	OTOF_uc010yla.1_Missense_Mutation_p.G80E|OTOF_uc002rhh.2_Missense_Mutation_p.G583E|OTOF_uc002rhi.2_Missense_Mutation_p.G660E|OTOF_uc002rhj.2_Missense_Mutation_p.G583E	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1350	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAAGTCAATTCCAGAGGGCTC	0.562													31	39					0	0	0.006230	0	0
C2orf70	339778	broad.mit.edu	37	2	26802166	26802166	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:26802166C>T	uc010eyn.2	+	4	466	c.466C>T	c.(466-468)CCT>TCT	p.P156S		NM_001105519	NP_001098989	A6NJV1	CB070_HUMAN	hypothetical protein LOC339778	156										skin(1)	1						CCCTAGGCCTCCTCTGTGCCC	0.582													17	33					0	0	0.007413	0	0
CGREF1	10669	broad.mit.edu	37	2	27324350	27324350	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:27324350C>T	uc010eys.1	-	6	891	c.749G>A	c.(748-750)GGA>GAA	p.G250E	CGREF1_uc010ylf.1_Intron|CGREF1_uc002rip.1_Intron|CGREF1_uc002riq.2_Missense_Mutation_p.G250E|CGREF1_uc010eyr.1_Missense_Mutation_p.G372E|CGREF1_uc002rir.1_Missense_Mutation_p.G250E|CGREF1_uc002ris.2_Missense_Mutation_p.E234K	NM_006569	NP_006560	Q99674	CGRE1_HUMAN	cell growth regulator with EF-hand domain 1	250					cell adhesion|cell cycle arrest|negative regulation of cell proliferation|response to stress	extracellular region	calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGGGCATCTCCTTCAGCCTC	0.706													43	75					0	0	0.008740	0	0
ABHD1	84696	broad.mit.edu	37	2	27352206	27352206	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:27352206G>A	uc002rit.2	+	4	641	c.481G>A	c.(481-483)GGC>AGC	p.G161S	ABHD1_uc002riu.2_RNA|ABHD1_uc002riv.2_Intron	NM_032604	NP_115993	Q96SE0	ABHD1_HUMAN	abhydrolase domain-containing protein 1	161						integral to membrane	carboxylesterase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TAACAACCGGGGCTGCCGTGG	0.577													18	27					0	0	0.010504	0	0
C2orf53	339779	broad.mit.edu	37	2	27360137	27360137	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:27360137G>A	uc002rjb.2	-	3	1641	c.1061C>T	c.(1060-1062)CCC>CTC	p.P354L	PREB_uc002rix.1_5'Flank|PREB_uc002riy.1_5'Flank|PREB_uc002riz.1_5'Flank|PREB_uc002rja.1_5'Flank	NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	354											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTCTGGGAGGGTGTGCCTGG	0.632													42	44					0	0	0.002852	0	0
SLC5A6	8884	broad.mit.edu	37	2	27427440	27427440	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:27427440G>A	uc002rjd.2	-	9	1285	c.894C>T	c.(892-894)TTC>TTT	p.F298F	SLC5A6_uc010eyv.1_Silent_p.F298F	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	298	Helical; (Potential).				biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	GCTGGAAGGGGAACACTGCAT	0.577													17	20					0	0	0.008871	0	0
C2orf71	388939	broad.mit.edu	37	2	29295609	29295609	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:29295609C>T	uc002rmt.1	-	1	1519	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	507					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GGAGTTTTTTCCTGCCAGGCA	0.562													51	67					0	0	0.003610	0	0
GALNT14	79623	broad.mit.edu	37	2	31147002	31147002	+	Missense_Mutation	SNP	C	T	T	rs145602304		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:31147002C>T	uc002rnr.2	-	13	1982	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K	GALNT14_uc002rnq.2_Missense_Mutation_p.E435K|GALNT14_uc002rns.2_Missense_Mutation_p.E460K|GALNT14_uc010ymr.1_Missense_Mutation_p.E420K|GALNT14_uc010ezo.1_Missense_Mutation_p.E422K	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	455	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TTTGCATCTTCGCCTTTGACC	0.522													78	83					0	0	0.003610	0	0
SPAST	6683	broad.mit.edu	37	2	32323885	32323885	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:32323885C>T	uc002roc.2	+	4	828	c.607C>T	c.(607-609)CCA>TCA	p.P203S	SPAST_uc002rod.2_Intron	NM_014946	NP_055761	Q9UBP0	SPAST_HUMAN	spastin isoform 1	203	Required for interaction with RTN1.				cell cycle|cell death|cell differentiation|cytokinesis, completion of separation|ER to Golgi vesicle-mediated transport|microtubule bundle formation|microtubule severing|nervous system development|protein hexamerization|protein homooligomerization	endoplasmic reticulum|endosome|integral to membrane|microtubule|microtubule organizing center|nucleus|perinuclear region of cytoplasm|spindle	alpha-tubulin binding|ATP binding|beta-tubulin binding|microtubule binding|microtubule-severing ATPase activity			breast(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					ACCAGTTTTGCCATTTTCCAA	0.318													28	36					0	0	0.006320	0	0
LTBP1	4052	broad.mit.edu	37	2	33500955	33500955	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:33500955G>A	uc002ros.2	+	18	2960	c.2960G>A	c.(2959-2961)AGC>AAC	p.S987N	LTBP1_uc002rot.2_Missense_Mutation_p.S661N|LTBP1_uc002rou.2_Missense_Mutation_p.S660N|LTBP1_uc002rov.2_Missense_Mutation_p.S607N|LTBP1_uc010ymz.1_Missense_Mutation_p.S660N|LTBP1_uc010yna.1_Missense_Mutation_p.S607N	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	986	EGF-like 6; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TACTGTGACAGCGGGTACCGC	0.577													34	46					0	0	0.002836	0	0
STRN	6801	broad.mit.edu	37	2	37085036	37085036	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:37085036C>T	uc002rpn.2	-	14	1809	c.1800G>A	c.(1798-1800)GAG>GAA	p.E600E	STRN_uc010ezx.2_Silent_p.E563E	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	600	WD 3.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				CTGGAGCAACCTCAGTTGTAT	0.393													19	25					0	0	0.002780	0	0
STRN	6801	broad.mit.edu	37	2	37111159	37111159	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:37111159G>A	uc002rpn.2	-	9	1111	c.1102C>T	c.(1102-1104)CCT>TCT	p.P368S	STRN_uc010ezx.2_Missense_Mutation_p.P331S	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	368					dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				TGCAATGAAGGAAGTTCATCA	0.433													19	34					0	0	0.008871	0	0
PPM1B	5495	broad.mit.edu	37	2	44428836	44428837	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:44428836_44428837CC>AA	uc002rtt.2	+	2	926_927	c.498_499CC>AA	c.(496-501)ACCCAG>ACAAAG	p.Q167K	PPM1B_uc002rts.2_Missense_Mutation_p.Q167K|PPM1B_uc002rtu.2_Missense_Mutation_p.Q167K|PPM1B_uc002rtv.2_Intron|PPM1B_uc002rtw.2_Missense_Mutation_p.Q167K|PPM1B_uc002rtx.2_Missense_Mutation_p.Q167K	NM_002706	NP_002697	O75688	PPM1B_HUMAN	protein phosphatase 1B isoform 1	167					protein dephosphorylation	protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity			kidney(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GCTTTTCTACCCAGGATCACAA	0.436													12	523					0	0	0.004672	0	0
VPS54	51542	broad.mit.edu	37	2	64208941	64208941	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:64208941G>A	uc002scq.2	-	3	380	c.217C>T	c.(217-219)CTC>TTC	p.L73F	VPS54_uc002scp.2_Missense_Mutation_p.L61F	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	73					protein transport|retrograde transport, endosome to Golgi						0						GCTGCTGGGAGATTTACTTTG	0.378													56	60					0	0	0.003610	0	0
CEP68	23177	broad.mit.edu	37	2	65296935	65296935	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:65296935G>A	uc002sdl.3	+	2	571	c.357G>A	c.(355-357)CAG>CAA	p.Q119Q	CEP68_uc002sdj.2_Silent_p.Q119Q|CEP68_uc010yqb.1_Silent_p.Q119Q|CEP68_uc002sdk.3_Silent_p.Q119Q|CEP68_uc010yqc.1_Silent_p.Q119Q|CEP68_uc010yqd.1_Silent_p.Q119Q	NM_015147	NP_055962	Q76N32	CEP68_HUMAN	centrosomal protein 68kDa	119					centrosome organization	centrosome				skin(1)	1						GGGAAAGCCAGGTAGGTACTA	0.552													35	52					0	0	0.004289	0	0
PLEK	5341	broad.mit.edu	37	2	68621295	68621295	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:68621295G>A	uc002sen.3	+	8	1065	c.903G>A	c.(901-903)GAG>GAA	p.E301E	PLEK_uc010fde.2_3'UTR	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	301	PH 2.				actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		CTTCAGTGGAGAGCAACTCAA	0.468													36	47					0	0	0.006230	0	0
PROKR1	10887	broad.mit.edu	37	2	68882234	68882234	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:68882234C>T	uc010yqj.1	+	2	708	c.708C>T	c.(706-708)ATC>ATT	p.I236I	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	236	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						TCCTCTTTATCTTTGGCATAG	0.552													45	45					0	0	0.003610	0	0
ANXA4	307	broad.mit.edu	37	2	70037755	70037755	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:70037755C>T	uc002sfr.3	+	7	654	c.427C>T	c.(427-429)CGC>TGC	p.R143C	ANXA4_uc010yqn.1_RNA|ANXA4_uc002sfs.3_Missense_Mutation_p.R121C|ANXA4_uc010yqo.1_Missense_Mutation_p.R59C	NM_001153	NP_001144	P09525	ANXA4_HUMAN	annexin IV	141	Annexin 2.				anti-apoptosis|signal transduction	cytoplasm	calcium ion binding|calcium-dependent phospholipid binding|phospholipase inhibitor activity				0						AGATGACATTCGCTCTGACAC	0.488													27	39					0	0	0.002445	0	0
ADD2	119	broad.mit.edu	37	2	70923465	70923465	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:70923465C>T	uc002sgz.2	-	5	851	c.386G>A	c.(385-387)GGG>GAG	p.G129E	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.G129E|ADD2_uc002sha.2_Missense_Mutation_p.G129E|ADD2_uc002sgx.2_Missense_Mutation_p.G129E|ADD2_uc010fdt.1_Missense_Mutation_p.G129E|ADD2_uc002shc.1_Missense_Mutation_p.G129E|ADD2_uc002shd.1_Missense_Mutation_p.G129E|ADD2_uc010fdu.1_Missense_Mutation_p.G145E	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	129					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						GAGCCGCTCCCCTTTGGCCAG	0.592													13	11					0	0	0.002450	0	0
CLEC4F	165530	broad.mit.edu	37	2	71046974	71046974	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:71046974G>A	uc002shf.2	-	2	188	c.111C>T	c.(109-111)CTC>CTT	p.L37L	CLEC4F_uc010yqv.1_Silent_p.L37L	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	37	Cytoplasmic (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						TAGCCTGAACGAGCCTCGGTA	0.557													17	18					0	0	0.010504	0	0
CD207	50489	broad.mit.edu	37	2	71062644	71062644	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:71062644G>A	uc002shg.2	-	2	215	c.168C>T	c.(166-168)TCC>TCT	p.S56S		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	56	Helical; Signal-anchor for type II membrane protein; (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						GCAGCAGGACGGAGGCGACCA	0.602													14	12					0	0	0.007413	0	0
TEX261	113419	broad.mit.edu	37	2	71216111	71216111	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:71216111G>A	uc002shn.2	-	5	523	c.409C>T	c.(409-411)CCG>TCG	p.P137S	TEX261_uc010fdy.2_Missense_Mutation_p.P90S	NM_144582	NP_653183	Q6UWH6	TX261_HUMAN	testis expressed sequence 261	137	Helical; (Potential).					integral to membrane					0						AACGCAAACGGAATTATCCAC	0.577													10	14					0	0	0.001368	0	0
TTC31	64427	broad.mit.edu	37	2	74719542	74719542	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:74719542C>T	uc002slt.2	+	11	1154	c.1131C>T	c.(1129-1131)TTC>TTT	p.F377F	TTC31_uc002sls.2_3'UTR|TTC31_uc010yrv.1_Intron|TTC31_uc002slu.2_Silent_p.F231F	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	377	TPR 3.						binding				0						GGGGCCTCTTCCGCCTGGGCA	0.617													30	26					0	0	0.002096	0	0
HK2	3099	broad.mit.edu	37	2	75101507	75101507	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:75101507C>T	uc002snd.2	+	7	2732	c.806C>T	c.(805-807)TCG>TTG	p.S269L		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	269	Regulatory.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						GACGATGGCTCGCTCAACGAC	0.572													10	8					0	0	0.006214	0	0
REG1A	5967	broad.mit.edu	37	2	79348011	79348011	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:79348011C>T	uc002snz.2	+	2	127	c.24C>T	c.(22-24)TTC>TTT	p.F8F	REG1A_uc010ffx.1_Silent_p.F8F|REG1A_uc010ysd.1_Silent_p.F8F	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	8					positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						GCTCATACTTCATGCTGATCT	0.463													39	32					0	0	0.002852	0	0
CTNNA2	1496	broad.mit.edu	37	2	80085165	80085165	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:80085165G>A	uc010ysh.1	+	3	330	c.325G>A	c.(325-327)GAG>AAG	p.E109K	CTNNA2_uc010yse.1_Missense_Mutation_p.E109K|CTNNA2_uc010ysf.1_Missense_Mutation_p.E109K|CTNNA2_uc010ysg.1_Missense_Mutation_p.E109K	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	109					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						CGCCTCCTCCGAGTTTGCAGA	0.582													63	69					0	0	0.003610	0	0
DUSP2	1844	broad.mit.edu	37	2	96809649	96809649	+	Silent	SNP	G	A	A	rs147952657	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:96809649G>A	uc002svk.3	-	4	944	c.858C>T	c.(856-858)TTC>TTT	p.F286F		NM_004418	NP_004409	Q05923	DUS2_HUMAN	dual specificity phosphatase 2	286	Tyrosine-protein phosphatase.				endoderm formation|inactivation of MAPK activity|regulation of apoptosis	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/threonine phosphatase activity			breast(1)	1		Ovarian(717;0.0228)				GCTGCTTAACGAAGTCAAAGG	0.617													13	8					0	0	0.001368	0	0
CNGA3	1261	broad.mit.edu	37	2	99013074	99013074	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:99013074C>T	uc002syt.2	+	8	1858	c.1441C>T	c.(1441-1443)CGC>TGC	p.R481C	CNGA3_uc002syu.2_Missense_Mutation_p.R463C|CNGA3_uc010fij.2_Missense_Mutation_p.R485C	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	481					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GAAGAAGGTTCGCATCTTCCA	0.567													7	12					0	0	0.003080	0	0
LYG2	254773	broad.mit.edu	37	2	99860512	99860512	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:99860512T>C	uc002szw.1	-	5	583	c.470A>G	c.(469-471)AAG>AGG	p.K157R	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_Missense_Mutation_p.K157R|LYG2_uc002szx.1_Missense_Mutation_p.K157R	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	157					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						CTGGATTGCCTTAATTCTCTC	0.438													16	34					0	0	0.007413	0	0
LONRF2	164832	broad.mit.edu	37	2	100903486	100903486	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:100903486C>T	uc002tal.3	-	11	2600	c.1960G>A	c.(1960-1962)GAT>AAT	p.D654N	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	654	Lon.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						TGCACAGAATCGTGGAGAGCG	0.478													17	12					0	0	0.004007	0	0
IL1RL2	8808	broad.mit.edu	37	2	102835524	102835524	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:102835524G>A	uc002tbs.2	+	7	962	c.836G>A	c.(835-837)CGA>CAA	p.R279Q	IL1RL2_uc002tbt.2_Missense_Mutation_p.R161Q	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	279	Extracellular (Potential).|Ig-like C2-type 3.				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						GAATCCAAACGAATCAGAGAA	0.403													29	52					0	0	0.003271	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459824	107459824	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:107459824G>A	uc002tdq.2	-	2	729	c.610C>T	c.(610-612)CTG>TTG	p.L204L	ST6GAL2_uc002tdr.2_Silent_p.L204L|ST6GAL2_uc002tds.3_Silent_p.L204L	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	204	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						AGCCGGTACAGGAAGGCCCTG	0.622													20	13					0	0	0.010504	0	0
SULT1C3	442038	broad.mit.edu	37	2	108881742	108881742	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:108881742G>A	uc010ywo.1	+	7	850	c.850G>A	c.(850-852)GAA>AAA	p.E284K		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	284						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						CCAAAATGAAGAATTTGACAA	0.473													43	53					0	0	0.003610	0	0
ANAPC1	64682	broad.mit.edu	37	2	112620093	112620093	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:112620093T>A	uc002thi.2	-	10	1382	c.1135A>T	c.(1135-1137)AAG>TAG	p.K379*		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	379					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						CTATGTCTCTTTGGAGACTGA	0.413													4	13					0	0	0.001984	0	0
MERTK	10461	broad.mit.edu	37	2	112777019	112777019	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:112777019C>T	uc002thk.1	+	16	2231	c.2109C>T	c.(2107-2109)TTC>TTT	p.F703F	MERTK_uc002thl.1_Silent_p.F527F	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	703	Protein kinase.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TATTGAAGTTCATGGTGGATA	0.423													80	72					0	0	0.003610	0	0
ZC3H6	376940	broad.mit.edu	37	2	113089707	113089707	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:113089707C>T	uc002thq.1	+	12	3606	c.3212C>T	c.(3211-3213)TCA>TTA	p.S1071L		NM_198581	NP_940983	P61129	ZC3H6_HUMAN	zinc finger CCCH-type domain containing 6	1071							nucleic acid binding|zinc ion binding	p.S1071L(1)		ovary(3)|central_nervous_system(1)	4						GGAGAAAACTCAAAGAACCAG	0.433													9	16					0	0	0.006214	0	0
POLR1B	84172	broad.mit.edu	37	2	113330160	113330160	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:113330160C>T	uc002thw.2	+	13	2676	c.2096C>T	c.(2095-2097)CCA>CTA	p.P699L	POLR1B_uc010fkn.2_Missense_Mutation_p.P643L|POLR1B_uc002thx.2_Missense_Mutation_p.P560L|POLR1B_uc010fko.2_Missense_Mutation_p.P516L|POLR1B_uc010fkp.2_Missense_Mutation_p.P138L|POLR1B_uc010yxn.1_Missense_Mutation_p.P737L|POLR1B_uc002thy.2_Missense_Mutation_p.P560L|POLR1B_uc010yxo.1_Missense_Mutation_p.P476L	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	699					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						ATGGGCTTTCCACTTCTCACT	0.358													30	36					0	0	0.003271	0	0
PSD4	23550	broad.mit.edu	37	2	113940135	113940135	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:113940135G>A	uc002tjc.2	+	2	285	c.102G>A	c.(100-102)AGG>AGA	p.R34R	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Silent_p.R33R|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	34					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						AGTGCCCAAGGGAAACGTGCA	0.587													29	25					0	0	0.002836	0	0
DPP10	57628	broad.mit.edu	37	2	116548899	116548899	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:116548899T>G	uc002tla.1	+	19	2124	c.1667T>G	c.(1666-1668)ATG>AGG	p.M556R	DPP10_uc002tlb.1_Missense_Mutation_p.M506R|DPP10_uc002tlc.1_Missense_Mutation_p.M552R|DPP10_uc002tle.2_Missense_Mutation_p.M560R|DPP10_uc002tlf.1_Missense_Mutation_p.M549R	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	556	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AAAGATTTTATGGACCGAAAC	0.299													46	44					0	0	0.003610	0	0
MARCO	8685	broad.mit.edu	37	2	119739064	119739064	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:119739064C>T	uc002tln.1	+	9	978	c.846C>T	c.(844-846)TTC>TTT	p.F282F	MARCO_uc010yyf.1_Silent_p.F204F	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	282	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AAGGTGACTTCGGGAGGCCAG	0.527													7	7					0	0	0.003080	0	0
PCDP1	200373	broad.mit.edu	37	2	120397388	120397388	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:120397388G>A	uc002tmb.2	+	22	2399	c.1307G>A	c.(1306-1308)AGC>AAC	p.S436N		NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	722						cilium	calmodulin binding				0	Colorectal(110;0.196)					CACTGGAAAAGCTTCCAGTCC	0.483													26	36					0	0	0.005443	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125555733	125555733	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:125555733C>T	uc002tno.2	+	19	3414	c.3050C>T	c.(3049-3051)CCT>CTT	p.P1017L	CNTNAP5_uc010flu.2_Missense_Mutation_p.P1018L	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	1017	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GAACCCTATCCTGTGACCAAG	0.443													13	13					0	0	0.004990	0	0
POTEF	728378	broad.mit.edu	37	2	130877834	130877834	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:130877834G>A	uc010fmh.2	-	3	655	c.255C>T	c.(253-255)GAC>GAT	p.D85D		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	85						cell cortex	ATP binding			skin(3)|ovary(2)	5						AGTCGTCGTGGTCTCCAGAAG	0.607													35	239					0	0	0.003610	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131688536	131688536	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:131688536C>T	uc002tsa.1	+	3	526	c.6C>T	c.(4-6)CCC>CCT	p.P2P	ARHGEF4_uc010fmw.1_Silent_p.P648P|ARHGEF4_uc002tsb.1_Silent_p.P2P|ARHGEF4_uc010fmx.1_Silent_p.P2P|ARHGEF4_uc002trz.1_Silent_p.P648P	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	2					apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		ACCACATGCCCTGGGAAGAAC	0.552													24	15					0	0	0.006320	0	0
POTEE	445582	broad.mit.edu	37	2	131976230	131976230	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:131976230C>T	uc002tsn.2	+	1	307	c.255C>T	c.(253-255)GAC>GAT	p.D85D	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	85							ATP binding				0						CTTCTGGAGACCACGACGACT	0.607													39	56					0	0	0.003610	0	0
POTEE	445582	broad.mit.edu	37	2	132020967	132020967	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:132020967G>A	uc002tsn.2	+	15	1991	c.1939G>A	c.(1939-1941)GAA>AAA	p.E647K	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.E247K|POTEE_uc002tsl.2_Missense_Mutation_p.E229K|POTEE_uc010fmy.1_Missense_Mutation_p.E111K	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	647	Potential.						ATP binding				0						CGTCTTGCATGAAAATAGTAC	0.353													29	25					0	0	0.003271	0	0
YSK4	80122	broad.mit.edu	37	2	135738810	135738810	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:135738810C>T	uc002tue.1	-	9	3532	c.3501G>A	c.(3499-3501)ACG>ACA	p.T1167T	YSK4_uc002tuf.1_Silent_p.T349T|YSK4_uc010fnc.1_Silent_p.T301T|YSK4_uc010fnd.1_Silent_p.T1054T|YSK4_uc010zbg.1_Silent_p.T299T|YSK4_uc002tuh.3_Silent_p.T895T|YSK4_uc002tui.3_3'UTR	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1167	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GTATTTGTTTCGTATATTTAC	0.388													41	50					0	0	0.003610	0	0
YSK4	80122	broad.mit.edu	37	2	135744319	135744319	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:135744319C>T	uc002tue.1	-	7	2154	c.2123G>A	c.(2122-2124)AGG>AAG	p.R708K	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.R595K|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.R436K|YSK4_uc002tui.3_Missense_Mutation_p.R725K	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	708							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		ATTGCTCTTCCTCTCACTGTG	0.393													64	78					0	0	0.003610	0	0
LCT	3938	broad.mit.edu	37	2	136566641	136566641	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:136566641C>T	uc002tuu.1	-	8	3287	c.3276G>A	c.(3274-3276)AGG>AGA	p.R1092R		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1092	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CGTGGGCTATCCTATATGGTG	0.537													26	29					0	0	0.004656	0	0
LRP1B	53353	broad.mit.edu	37	2	141299464	141299464	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:141299464C>T	uc002tvj.1	-	44	8243	c.7271G>A	c.(7270-7272)GGA>GAA	p.G2424E		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2424	Extracellular (Potential).|LDL-receptor class B 27.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGCTCTTCTTCCCCAGTCCGA	0.408										TSP Lung(27;0.18)			23	31					0	0	0.002299	0	0
LRP1B	53353	broad.mit.edu	37	2	141458014	141458014	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:141458014G>A	uc002tvj.1	-	41	7576	c.6604C>T	c.(6604-6606)CTT>TTT	p.L2202F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2202	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCATCAGAAAGATGTATACTT	0.363										TSP Lung(27;0.18)			33	48					0	0	0.002096	0	0
KYNU	8942	broad.mit.edu	37	2	143685263	143685263	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:143685263G>A	uc002tvl.2	+	4	456	c.326G>A	c.(325-327)TGG>TAG	p.W109*	KYNU_uc002tvk.2_Nonsense_Mutation_p.W109*|KYNU_uc010fnm.2_Nonsense_Mutation_p.W109*	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	109					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	AAGCGTCCTTGGATTACAGGA	0.358													34	52					0	0	0.006999	0	0
MMADHC	27249	broad.mit.edu	37	2	150436117	150436117	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:150436117G>A	uc002txb.2	-	3	705	c.200C>T	c.(199-201)CCT>CTT	p.P67L	MMADHC_uc002txc.2_Missense_Mutation_p.P67L|MMADHC_uc010fnu.2_Missense_Mutation_p.P67L	NM_015702	NP_056517	Q9H3L0	MMAD_HUMAN	methylmalonic aciduria (cobalamin deficiency)	67						mitochondrion				central_nervous_system(1)|skin(1)	2						CTGATCTTGAGGTCCAAAGGG	0.433													31	21					0	0	0.003755	0	0
NEB	4703	broad.mit.edu	37	2	152512466	152512466	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:152512466C>T	uc010fnx.2	-	50	6758	c.6567G>A	c.(6565-6567)GTG>GTA	p.V2189V		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2189	Nebulin 58.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGGCCTTCTCCACTTCCAGAG	0.428													28	41					0	0	0.002096	0	0
WDSUB1	151525	broad.mit.edu	37	2	160136445	160136445	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:160136445A>G	uc002uaj.3	-	3	559	c.410T>C	c.(409-411)GTT>GCT	p.V137A	WDSUB1_uc002uak.3_Missense_Mutation_p.V137A|WDSUB1_uc002ual.3_Missense_Mutation_p.V137A|WDSUB1_uc002uam.3_Missense_Mutation_p.V137A|WDSUB1_uc010foo.2_Missense_Mutation_p.V137A	NM_152528	NP_689741	Q8N9V3	WSDU1_HUMAN	WD repeat, sterile alpha motif and U-box domain	137	WD 4.					ubiquitin ligase complex	ubiquitin-protein ligase activity				0						GCCATCTTTAACACTACCACA	0.398													8	7					0	0	0.004482	0	0
SLC38A11	151258	broad.mit.edu	37	2	165802238	165802238	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:165802238C>T	uc002ucv.1	-	5	599	c.62_splice	c.e5-1	p.D21_splice	SLC38A11_uc002ucu.1_Splice_Site_p.D21_splice|SLC38A11_uc002ucw.1_Splice_Site_p.D21_splice	NM_173512	NP_775783	Q08AI6	S38AB_HUMAN	solute carrier family 38, member 11						amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						AGGGAAAAGTCTGTGGCAAGA	0.353													50	46					0	0	0.003610	0	0
SCN3A	6328	broad.mit.edu	37	2	166011151	166011151	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:166011151C>T	uc002ucx.2	-	11	1683	c.1191G>A	c.(1189-1191)GGG>GGA	p.G397G	SCN3A_uc002ucy.2_Silent_p.G397G|SCN3A_uc002ucz.2_Silent_p.G397G|SCN3A_uc002uda.1_Silent_p.G266G|SCN3A_uc002udb.1_Silent_p.G266G	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	397						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TGTATGTTTTCCCAGCAGCAC	0.398													24	31					0	0	0.006320	0	0
SCN2A	6326	broad.mit.edu	37	2	166245378	166245378	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:166245378G>A	uc002udc.2	+	27	5352	c.5062G>A	c.(5062-5064)GAA>AAA	p.E1688K	SCN2A_uc002udd.2_Missense_Mutation_p.E1688K|SCN2A_uc002ude.2_Missense_Mutation_p.E1688K	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1688	IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TGTTAAGAGGGAAGTTGGGAT	0.468													76	92					0	0	0.003610	0	0
SCN1A	6323	broad.mit.edu	37	2	166848847	166848847	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:166848847G>A	uc010zcz.1	-	26	4923	c.4905C>T	c.(4903-4905)ATC>ATT	p.I1635I		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1646	Helical; Voltage-sensor; Name=S4 of repeat IV; (By similarity).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TCAGACGTAGGATTCGGCCAA	0.478													46	66					0	0	0.003610	0	0
SCN1A	6323	broad.mit.edu	37	2	166894574	166894574	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:166894574G>A	uc010zcz.1	-	15	2643	c.2625C>T	c.(2623-2625)TCC>TCT	p.S875S	SCN1A_uc002udo.3_Silent_p.S755S|SCN1A_uc010fpk.2_Silent_p.S727S	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	886	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GAGCCCCCACGGAATTGCCGA	0.408													31	42					0	0	0.007291	0	0
SCN1A	6323	broad.mit.edu	37	2	166929996	166929996	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:166929996C>T	uc010zcz.1	-	1	154	c.136G>A	c.(136-138)GAA>AAA	p.E46K		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	46						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GGGCCATTTTCGTCGTCATCT	0.448													77	112					0	0	0.003610	0	0
XIRP2	129446	broad.mit.edu	37	2	168074691	168074691	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:168074691G>A	uc002udx.2	+	4	757	c.739G>A	c.(739-741)GAA>AAA	p.E247K	XIRP2_uc010fpn.2_Missense_Mutation_p.E280K|XIRP2_uc010fpo.2_Missense_Mutation_p.E247K|XIRP2_uc010fpp.2_Missense_Mutation_p.E247K|XIRP2_uc002udy.2_Missense_Mutation_p.E72K|XIRP2_uc010fpq.2_Missense_Mutation_p.E25K|XIRP2_uc010fpr.2_Missense_Mutation_p.E25K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	72					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GGAAGAATCAGAAATGTGCGC	0.378													34	40					0	0	0.004878	0	0
XIRP2	129446	broad.mit.edu	37	2	168105205	168105205	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:168105205G>A	uc002udx.2	+	8	7321	c.7303G>A	c.(7303-7305)GAT>AAT	p.D2435N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D2260N|XIRP2_uc010fpq.2_Missense_Mutation_p.D2213N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2260					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GCATATAAAAGATAATAAGAA	0.403													50	55					0	0	0.003610	0	0
XIRP2	129446	broad.mit.edu	37	2	168106510	168106510	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:168106510C>T	uc002udx.2	+	8	8626	c.8608C>T	c.(8608-8610)CAG>TAG	p.Q2870*	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Nonsense_Mutation_p.Q2695*|XIRP2_uc010fpq.2_Nonsense_Mutation_p.Q2648*|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Nonsense_Mutation_p.Q216*	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2695					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCAGAATTTTCAGCAAACACA	0.388													48	61					0	0	0.003610	0	0
LRP2	4036	broad.mit.edu	37	2	169997050	169997050	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:169997050C>T	uc002ues.2	-	72	13327	c.13114G>A	c.(13114-13116)GAA>AAA	p.E4372K		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4372	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ATAGGCAGTTCGATGGCTGCA	0.547													21	19					0	0	0.002299	0	0
LRP2	4036	broad.mit.edu	37	2	170127566	170127566	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:170127566G>A	uc002ues.2	-	16	2381	c.2168C>T	c.(2167-2169)CCG>CTG	p.P723L	LRP2_uc010zdf.1_Intron	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	723	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CAAGGTGAACGGGATCCCACG	0.448													26	28					0	0	0.004656	0	0
LRP2	4036	broad.mit.edu	37	2	170150722	170150722	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:170150722G>A	uc002ues.2	-	6	801	c.588C>T	c.(586-588)ATC>ATT	p.I196I	LRP2_uc010zdf.1_Silent_p.I196I	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	196	LDL-receptor class A 5.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AAGCACGAGGGATACACTCTC	0.438													48	55					0	0	0.003610	0	0
PPIG	9360	broad.mit.edu	37	2	170460756	170460756	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:170460756C>T	uc002uez.2	+	4	341	c.121C>T	c.(121-123)CGT>TGT	p.R41C	PPIG_uc010fpx.2_Missense_Mutation_p.R41C|PPIG_uc010fpy.2_Intron|PPIG_uc002ufa.2_Missense_Mutation_p.R41C|PPIG_uc002ufb.2_Missense_Mutation_p.R41C|PPIG_uc002ufc.1_Missense_Mutation_p.R41C|PPIG_uc002ufd.2_Missense_Mutation_p.R41C	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	41	PPIase cyclophilin-type.				protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	CGAGAACTTTCGTTGTCTTTG	0.343													49	59					0	0	0.003610	0	0
GPR155	151556	broad.mit.edu	37	2	175326182	175326182	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:175326182C>T	uc002uit.2	-	10	1899	c.1508G>A	c.(1507-1509)GGA>GAA	p.G503E	GPR155_uc002uiu.2_Missense_Mutation_p.G503E|GPR155_uc002uiv.2_Missense_Mutation_p.G503E|GPR155_uc010fqs.2_Missense_Mutation_p.G475E	NM_001033045	NP_001028217	Q7Z3F1	GP155_HUMAN	G protein-coupled receptor 155 isoform 9	503					intracellular signal transduction|transmembrane transport	integral to membrane				ovary(1)	1						ATTGTGTTTTCCAGTTATCAA	0.373													63	57					0	0	0.003610	0	0
CHN1	1123	broad.mit.edu	37	2	175677155	175677155	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:175677155C>T	uc002uji.2	-	9	1298	c.768G>A	c.(766-768)AAG>AAA	p.K256K	CHN1_uc010zeq.1_Silent_p.K230K|CHN1_uc002ujj.2_Silent_p.K31K|CHN1_uc002ujg.2_Silent_p.K131K	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	256					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			TCAAGTCTGGCTTACAGTCAT	0.403			T	TAF15	extraskeletal myxoid chondrosarcoma								25	40					0	0	0.005443	0	0
RBM45	129831	broad.mit.edu	37	2	178990712	178990712	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:178990712C>T	uc002ulv.2	+	9	1326	c.1234C>T	c.(1234-1236)CGT>TGT	p.R412C		NM_152945	NP_694453	Q8IUH3	RBM45_HUMAN	RNA binding motif protein 45	414	RRM 3.				cell differentiation|nervous system development	cytoplasm|nucleus	nucleotide binding|RNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.00957)|all cancers(119;0.037)			TTGTTTCAGTCGTTTTGGTAA	0.259													13	30					0	0	0.001855	0	0
OSBPL6	114880	broad.mit.edu	37	2	179247909	179247909	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179247909G>A	uc002ulx.2	+	17	2158	c.1780G>A	c.(1780-1782)GAG>AAG	p.E594K	OSBPL6_uc002uly.2_Missense_Mutation_p.E619K|OSBPL6_uc010zfe.1_Missense_Mutation_p.E563K|OSBPL6_uc002ulz.2_Missense_Mutation_p.E558K|OSBPL6_uc002uma.2_Missense_Mutation_p.E598K	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	594					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			GGAGCTAAACGAGCCGCTCAA	0.478													22	19					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179393070	179393070	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179393070C>T	uc010zfg.1	-	310	99828	c.99604G>A	c.(99604-99606)GGA>AGA	p.G33202R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G26897R|TTN_uc010zfi.1_Missense_Mutation_p.G26830R|TTN_uc010zfj.1_Missense_Mutation_p.G26705R|TTN_uc002umq.2_Missense_Mutation_p.G219R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	34129							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGTACTTTCCACTGTCGCTG	0.413													31	30					0	0	0.002445	0	0
TTN	7273	broad.mit.edu	37	2	179396937	179396937	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179396937T>A	uc010zfg.1	-	307	96925	c.96701A>T	c.(96700-96702)AAA>ATA	p.K32234I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K25929I|TTN_uc010zfi.1_Missense_Mutation_p.K25862I|TTN_uc010zfj.1_Missense_Mutation_p.K25737I|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33161							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCGCCTTGATTTCTTTCTAGA	0.413													14	23					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179400746	179400746	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179400746C>T	uc010zfg.1	-	306	93248	c.93024G>A	c.(93022-93024)GGG>GGA	p.G31008G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G24703G|TTN_uc010zfi.1_Silent_p.G24636G|TTN_uc010zfj.1_Silent_p.G24511G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31935							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACACAGATCCCCCTTGGTTGG	0.438													40	42					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179404389	179404389	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179404389C>T	uc010zfg.1	-	301	90923	c.90699G>A	c.(90697-90699)GGG>GGA	p.G30233G	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G23928G|TTN_uc010zfi.1_Silent_p.G23861G|TTN_uc010zfj.1_Silent_p.G23736G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31160							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTCCAGTGGCCCTTCTGGAC	0.502													38	42					0	0	0.006999	0	0
TTN	7273	broad.mit.edu	37	2	179413538	179413538	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179413538C>T	uc010zfg.1	-	288	85335	c.85111G>A	c.(85111-85113)GCT>ACT	p.A28371T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A22066T|TTN_uc010zfi.1_Missense_Mutation_p.A21999T|TTN_uc010zfj.1_Missense_Mutation_p.A21874T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29298							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGGCCCCAGCTCTAACAACA	0.478													34	27					0	0	0.002836	0	0
TTN	7273	broad.mit.edu	37	2	179449136	179449136	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179449136G>A	uc010zfg.1	-	260	57662	c.57438C>T	c.(57436-57438)GTC>GTT	p.V19146V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V12841V|TTN_uc010zfi.1_Silent_p.V12774V|TTN_uc010zfj.1_Silent_p.V12649V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20073							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGTTGACCGGACAAGAGTAT	0.458													34	54					0	0	0.004878	0	0
TTN	7273	broad.mit.edu	37	2	179459340	179459340	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179459340T>A	uc010zfg.1	-	245	50401	c.50177A>T	c.(50176-50178)AAA>ATA	p.K16726I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K10421I|TTN_uc010zfi.1_Missense_Mutation_p.K10354I|TTN_uc010zfj.1_Missense_Mutation_p.K10229I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17653							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTAACTTCTTTGACTTCCAG	0.378													45	56					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179478624	179478624	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179478624G>A	uc010zfg.1	-	212	41906	c.41682C>T	c.(41680-41682)ATC>ATT	p.I13894I	uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.I7589I|TTN_uc010zfi.1_Silent_p.I7522I|TTN_uc010zfj.1_Silent_p.I7397I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14821							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGTCTTTAGTGATATCAGAAG	0.428													56	86					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179537423	179537423	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179537423C>T	uc010zfg.1	-	148	31115	c.30891G>A	c.(30889-30891)AAG>AAA	p.K10297K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.K6958K|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'Flank|TTN_uc002una.1_RNA|TTN_uc010frf.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11224							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGAATTTTCTTTGACACTT	0.363													9	13					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179585251	179585251	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179585251C>T	uc010zfg.1	-	77	19730	c.19506G>A	c.(19504-19506)AAG>AAA	p.K6502K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.K3163K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7429							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTAAATTTCTTGCTGTTTC	0.378													20	14					0	0	0.008871	0	0
TTN	7273	broad.mit.edu	37	2	179588019	179588019	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179588019G>A	uc010zfg.1	-	72	18207	c.17983C>T	c.(17983-17985)CAT>TAT	p.H5995Y	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.H2656Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6922							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTACAGAATGATCACTTAAT	0.388													16	24					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179606092	179606092	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179606092G>A	uc010zfh.1	-	46	11579	c.11355C>T	c.(11353-11355)ATC>ATT	p.I3785I	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.I3718I|TTN_uc010zfj.1_Silent_p.I3593I|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTACTCAAAGATGGCAGGAA	0.463													77	86					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179611041	179611041	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179611041C>T	uc002unb.2	-	46	16310	c.16086G>A	c.(16084-16086)AGG>AGA	p.R5362R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCTCCCTCCCTTGAATCCA	0.323													29	26					0	0	0.006320	0	0
TTN	7273	broad.mit.edu	37	2	179648923	179648923	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179648923G>A	uc010zfg.1	-	16	2873	c.2649C>T	c.(2647-2649)TTC>TTT	p.F883F	TTN_uc010zfh.1_Silent_p.F837F|TTN_uc010zfi.1_Silent_p.F837F|TTN_uc010zfj.1_Silent_p.F837F|TTN_uc002unb.2_Silent_p.F883F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	883							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGTGTCAGCGAAGGGGAACT	0.537													30	44					0	0	0.002836	0	0
TTN	7273	broad.mit.edu	37	2	179658259	179658259	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179658259C>T	uc010zfg.1	-	9	1632	c.1408G>A	c.(1408-1410)GAA>AAA	p.E470K	TTN_uc010zfh.1_Missense_Mutation_p.E470K|TTN_uc010zfi.1_Missense_Mutation_p.E470K|TTN_uc010zfj.1_Missense_Mutation_p.E470K|TTN_uc002unb.2_Missense_Mutation_p.E470K|TTN_uc010frg.1_Missense_Mutation_p.E144K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	470							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTCCGCTTCCTTTCTTACC	0.303													32	29					0	0	0.003271	0	0
CCDC141	285025	broad.mit.edu	37	2	179732790	179732790	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:179732790G>A	uc002unf.1	-	6	869	c.812C>T	c.(811-813)TCC>TTC	p.S271F		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	271							protein binding	p.S271S(1)		ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GACTCCTAAGGAAAGGGCCAG	0.512													31	29					0	0	0.003755	0	0
PDE1A	5136	broad.mit.edu	37	2	183066172	183066172	+	Silent	SNP	G	A	A	rs149666537		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:183066172G>A	uc002uos.2	-	11	1251	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	PDE1A_uc010zfp.1_Silent_p.F285F|PDE1A_uc002uoq.1_Silent_p.F389F|PDE1A_uc010zfq.1_Silent_p.F389F|PDE1A_uc002uor.2_Silent_p.F373F|PDE1A_uc002uou.2_Silent_p.F355F	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	389	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding	p.F389F(1)		skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			GCACCTGCAGGAAAAACTCCT	0.483													58	68					0	0	0.003610	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801744	185801744	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:185801744A>T	uc002uph.2	+	4	2215	c.1621A>T	c.(1621-1623)AAT>TAT	p.N541Y		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	541						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TTCTGGAAAAAATGAGAACAC	0.338													21	24					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	2	186678426	186678426	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:186678426G>A	uc002upm.2	+	2		c.3064G>A			uc010zfu.1_Missense_Mutation_p.R1159Q					Homo sapiens cDNA FLJ44048 fis, clone TESTI4030669.																		AAAGAGGAACGAGATTCTGAT	0.313													7	14					0	0	0.004482	0	0
TFPI	7035	broad.mit.edu	37	2	188361661	188361661	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:188361661C>T	uc002upx.2	-	3	299	c.266G>A	c.(265-267)GGA>GAA	p.G89E	TFPI_uc002upy.2_Missense_Mutation_p.G89E|TFPI_uc002upz.2_Missense_Mutation_p.G85E|TFPI_uc002uqa.2_Missense_Mutation_p.G89E|TFPI_uc002uqb.2_Missense_Mutation_p.G89E	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	89	BPTI/Kunitz inhibitor 1.				blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	ATTCTGATTTCCTTCACATCC	0.388													25	48					0	0	0.005443	0	0
Unknown	0	broad.mit.edu	37	2	190788223	190788223	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:190788223C>T	uc002uro.2	+	1	305	c.162C>T	c.(160-162)TTC>TTT	p.F54F						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		GCTTTGCCTTCTTTCAGTATG	0.463													29	41					0	0	0.002836	0	0
STAT4	6775	broad.mit.edu	37	2	191897687	191897687	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:191897687C>T	uc002usm.1	-	21	2295	c.2041G>A	c.(2041-2043)GAA>AAA	p.E681K	STAT4_uc002usn.1_Missense_Mutation_p.E681K|STAT4_uc010zgk.1_Missense_Mutation_p.E526K|STAT4_uc002uso.2_Missense_Mutation_p.E681K	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	681					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			ACCTAACCTTCGCAAGGCTGA	0.363													24	32					0	0	0.002780	0	0
TMEFF2	23671	broad.mit.edu	37	2	192815113	192815113	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:192815113C>T	uc002utc.2	-	10	1443	c.1049G>A	c.(1048-1050)AGA>AAA	p.R350K		NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	350	Cytoplasmic (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			TCTGTGAATTCTGTTGCTTCT	0.423													48	39					0	0	0.003610	0	0
DNAH7	56171	broad.mit.edu	37	2	196722110	196722110	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:196722110G>A	uc002utj.3	-	44	8506	c.8405C>T	c.(8404-8406)TCA>TTA	p.S2802L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2802	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTTATCATATGAATCCATTGC	0.343													41	36					0	0	0.002522	0	0
DNAH7	56171	broad.mit.edu	37	2	196738347	196738347	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:196738347C>T	uc002utj.3	-	39	6459	c.6358G>A	c.(6358-6360)GAT>AAT	p.D2120N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2120	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATGGATTTATCACTAAACTCA	0.274													30	45					0	0	0.002445	0	0
DNAH7	56171	broad.mit.edu	37	2	196746611	196746611	+	Nonsense_Mutation	SNP	G	A	A	rs149212659		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:196746611G>A	uc002utj.3	-	36	5970	c.5869C>T	c.(5869-5871)CGA>TGA	p.R1957*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1957	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity	p.R1957*(1)		skin(10)|ovary(2)	12						GCAGAGTATCGAATTGTGTCC	0.378													31	56					0	0	0.009535	0	0
HECW2	57520	broad.mit.edu	37	2	197086952	197086952	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:197086952C>T	uc002utm.1	-	24	4312	c.4129G>A	c.(4129-4131)GAA>AAA	p.E1377K	HECW2_uc002utl.1_Missense_Mutation_p.E1021K	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1377	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						AATACTTCTTCGTTCACAGTG	0.453													30	31					0	0	0.009535	0	0
CCDC150	284992	broad.mit.edu	37	2	197583330	197583330	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:197583330C>T	uc002utp.1	+	18	2105	c.1970C>T	c.(1969-1971)GCT>GTT	p.A657V	CCDC150_uc010zgs.1_Missense_Mutation_p.A304V|CCDC150_uc010zgt.1_Missense_Mutation_p.A74V|CCDC150_uc002utq.1_5'Flank|CCDC150_uc002utr.1_5'Flank	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	657	Potential.										0						GACCTCGAGGCTGTGGAGGAC	0.448													28	38					0	0	0.009535	0	0
MARS2	92935	broad.mit.edu	37	2	198570890	198570890	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:198570890C>T	uc002uuq.2	+	1	804	c.761C>T	c.(760-762)TCC>TTC	p.S254F	uc002uup.2_Intron	NM_138395	NP_612404	Q96GW9	SYMM_HUMAN	methionine-tRNA synthetase 2 precursor	254					methionyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|methionine-tRNA ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					L-Methionine(DB00134)	CCCGACCTGTCCGTGTCTCGC	0.607													24	28					0	0	0.005443	0	0
BOLL	66037	broad.mit.edu	37	2	198640447	198640447	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:198640447A>G	uc002uus.2	-	5	604	c.294T>C	c.(292-294)TAT>TAC	p.Y98Y	BOLL_uc002uur.2_Silent_p.Y104Y|BOLL_uc002uut.2_Silent_p.Y110Y|BOLL_uc010zha.1_Intron|BOLL_uc002uuu.1_Silent_p.Y104Y	NM_033030	NP_149019	Q8N9W6	BOLL_HUMAN	boule isoform 2	98	RRM.				cell differentiation|meiosis|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm	nucleotide binding|protein binding|RNA binding|translation activator activity			ovary(2)	2						TCTTATCCTTATAATTAAGTT	0.239													31	46					0	0	0.004289	0	0
SATB2	23314	broad.mit.edu	37	2	200213545	200213545	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:200213545G>A	uc002uuy.1	-	7	1869	c.1052C>T	c.(1051-1053)CCA>CTA	p.P351L	SATB2_uc010fsq.1_Missense_Mutation_p.P233L|SATB2_uc002uuz.1_Missense_Mutation_p.P351L|SATB2_uc002uva.1_Missense_Mutation_p.P351L|SATB2_uc002uvb.1_Missense_Mutation_p.P94L	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	351	CUT 1.					cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGTTGGCTCTGGCTTAACTGC	0.537													42	66					0	0	0.002852	0	0
CD28	940	broad.mit.edu	37	2	204594400	204594400	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:204594400C>T	uc002vah.3	+	3	661	c.439C>T	c.(439-441)CCC>TCC	p.P147S	CD28_uc002vag.1_RNA|CD28_uc010zio.1_RNA|CD28_uc010ftx.2_Missense_Mutation_p.P28S|CD28_uc002vaj.3_Intron	NM_006139	NP_006130	P10747	CD28_HUMAN	CD28 antigen precursor	147	Extracellular (Potential).				cell surface receptor linked signaling pathway|cytokine biosynthetic process|humoral immune response|positive regulation of anti-apoptosis|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation of translation|positive regulation of viral genome replication|regulation of defense response to virus by virus|regulatory T cell differentiation|T cell costimulation|viral reproduction	cytosol|external side of plasma membrane|integral to plasma membrane	coreceptor activity|protease binding|SH3/SH2 adaptor activity				0						TCCCCTATTTCCCGGACCTTC	0.438													50	57					0	0	0.003610	0	0
DYTN	391475	broad.mit.edu	37	2	207527702	207527702	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:207527702C>T	uc002vbr.1	-	11	1675	c.1558G>A	c.(1558-1560)GAT>AAT	p.D520N		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	520	Potential.					plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		TCCAGCTCATCCTTTCTCTCC	0.458													76	86					0	0	0.003610	0	0
MDH1B	130752	broad.mit.edu	37	2	207611011	207611011	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:207611011C>T	uc002vbs.2	-	8	1411	c.1356G>A	c.(1354-1356)CAG>CAA	p.Q452Q	MDH1B_uc010ziw.1_RNA|MDH1B_uc010fui.2_Silent_p.Q452Q|MDH1B_uc010fuj.2_Silent_p.Q354Q|MDH1B_uc002vbt.2_RNA	NM_001039845	NP_001034934	Q5I0G3	MDH1B_HUMAN	malate dehydrogenase 1B, NAD (soluble)	452					carbohydrate metabolic process|malate metabolic process|tricarboxylic acid cycle		binding|malate dehydrogenase activity			ovary(3)|kidney(1)	4				LUSC - Lung squamous cell carcinoma(261;0.0763)|Epithelial(149;0.131)|Lung(261;0.145)		CTGACATTACCTGAATTAGAT	0.368													22	36					0	0	0.003330	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209214792	209214792	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:209214792C>T	uc002vcz.2	+	36	5577	c.5419C>T	c.(5419-5421)CCT>TCT	p.P1807S		NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1807	PIPK.				cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						ACTCATAAATCCTCATGTGGA	0.343													49	52					0	0	0.003610	0	0
PTH2R	5746	broad.mit.edu	37	2	209302345	209302345	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:209302345C>T	uc002vdb.2	+	3	475	c.262C>T	c.(262-264)CCT>TCT	p.P88S	PTH2R_uc010zjb.1_Missense_Mutation_p.P99S	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	88	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TCCATGCCCTCCTTATATTTA	0.323													18	25					0	0	0.010504	0	0
CPS1	1373	broad.mit.edu	37	2	211456679	211456679	+	Missense_Mutation	SNP	G	A	A	rs149930500		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:211456679G>A	uc002vee.3	+	10	1204	c.1072G>A	c.(1072-1074)GAT>AAT	p.D358N	CPS1_uc010fur.2_Missense_Mutation_p.D364N|CPS1_uc010fus.2_5'Flank	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	358	Glutamine amidotransferase type-1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GAATGTCAACGATCAAACAAA	0.353													15	17					0	0	0.008871	0	0
SPAG16	79582	broad.mit.edu	37	2	214204952	214204952	+	Missense_Mutation	SNP	G	A	A	rs144854983		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:214204952G>A	uc002veq.2	+	6	694	c.602G>A	c.(601-603)CGA>CAA	p.R201Q	SPAG16_uc010fuz.1_Missense_Mutation_p.R52Q|SPAG16_uc002ver.2_Missense_Mutation_p.R147Q|SPAG16_uc010zjk.1_Missense_Mutation_p.R107Q|SPAG16_uc002vep.1_Intron|SPAG16_uc002ves.1_Missense_Mutation_p.R170Q	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	201	Potential.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		CATCATAAGCGAATAGTCCAG	0.284													19	21					0	0	0.001882	0	0
CXCR2	3579	broad.mit.edu	37	2	219000367	219000367	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:219000367G>A	uc002vgz.1	+	4	1068	c.843G>A	c.(841-843)GTG>GTA	p.V281V	CXCR2_uc002vha.1_Silent_p.V281V|CXCR2_uc002vhb.1_Silent_p.V281V	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	281	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						GGACCCAGGTGATCCAGGAGA	0.607													29	43					0	0	0.009535	0	0
CXCR2	3579	broad.mit.edu	37	2	219000488	219000488	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:219000488C>T	uc002vgz.1	+	4	1189	c.964C>T	c.(964-966)CGC>TGC	p.R322C	CXCR2_uc002vha.1_Missense_Mutation_p.R322C|CXCR2_uc002vhb.1_Missense_Mutation_p.R322C	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	322	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						CCAGAAGTTTCGCCATGGACT	0.547													37	58					0	0	0.007835	0	0
CXCR1	3577	broad.mit.edu	37	2	219028987	219028987	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:219028987G>A	uc002vhc.2	-	2	1067	c.948C>T	c.(946-948)TTC>TTT	p.F316F		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	316	Cytoplasmic (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						GGATCTTGAGGAATCCATGGC	0.527													44	48					0	0	0.002522	0	0
AAMP	14	broad.mit.edu	37	2	219130319	219130319	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:219130319G>A	uc002vhk.2	-	8	1050	c.966C>T	c.(964-966)TCC>TCT	p.S322S	AAMP_uc002vhj.2_Silent_p.S303S|AAMP_uc010fvo.2_Silent_p.S322S|AAMP_uc002vhl.2_Silent_p.S323S	NM_001087	NP_001078	Q13685	AAMP_HUMAN	angio-associated, migratory cell protein	322	WD 6.				angiogenesis|cell differentiation|positive regulation of endothelial cell migration|smooth muscle cell migration	cell surface|cytoplasm|plasma membrane	heparin binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;7.19e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGAAGCCCAAGGACTCCACCG	0.637													15	25					0	0	0.003163	0	0
CCDC108	255101	broad.mit.edu	37	2	219903137	219903137	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:219903137C>T	uc002vjl.1	-	4	401	c.317G>A	c.(316-318)AGC>AAC	p.S106N	CCDC108_uc010zkp.1_Missense_Mutation_p.S95N|CCDC108_uc010zkq.1_Missense_Mutation_p.S41N|CCDC108_uc002vjn.2_Missense_Mutation_p.S41N	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	106						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCTGCACTGCTGTCGTTGAT	0.463													20	32					0	0	0.010504	0	0
SPEG	10290	broad.mit.edu	37	2	220354402	220354402	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:220354402C>T	uc010fwg.2	+	36	8662	c.8662C>T	c.(8662-8664)CCT>TCT	p.P2888S		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2888	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		AGCCTCCACTCCTCAAGGGGT	0.627													78	80					0	0	0.003610	0	0
SCG2	7857	broad.mit.edu	37	2	224462720	224462720	+	Silent	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:224462720T>G	uc002vnm.2	-	2	1414	c.1281A>C	c.(1279-1281)CTA>CTC	p.L427L		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	427					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		GCCCGTCTGGTAGGGCCTCAG	0.473													32	32					0	0	0.003271	0	0
SCG2	7857	broad.mit.edu	37	2	224463493	224463493	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:224463493A>G	uc002vnm.2	-	2	641	c.508T>C	c.(508-510)TAT>CAT	p.Y170H		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	170					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		TTCTCTTCATACATAGGAGGG	0.403													49	76					0	0	0.003610	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446677	226446677	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:226446677C>T	uc002voe.2	+	4	719	c.544C>T	c.(544-546)CAC>TAC	p.H182Y	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	182										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		ACCAAGACCCCACAGCGATGA	0.398													63	87					0	0	0.003610	0	0
COL4A4	1286	broad.mit.edu	37	2	227915872	227915872	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:227915872C>T	uc010zlt.1	-	33	3625	c.2971G>A	c.(2971-2973)GAT>AAT	p.D991N		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	991	Triple-helical region.|Cell attachment site (Potential).				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GTTCCTTTATCACCTGATGAA	0.493													36	37					0	0	0.003755	0	0
COL4A3	1285	broad.mit.edu	37	2	228135599	228135599	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:228135599G>A	uc002vom.1	+	25	1851	c.1689G>A	c.(1687-1689)GGG>GGA	p.G563G	COL4A3_uc002von.1_Silent_p.G563G|COL4A3_uc002voo.1_Silent_p.G563G|COL4A3_uc002vop.1_Silent_p.G563G|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	563	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GCCAACCTGGGAGAAAGGGCT	0.537													17	30					0	0	0.006122	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884573	228884573	+	Missense_Mutation	SNP	C	T	T	rs148914025		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:228884573C>T	uc002vpq.2	-	7	1044	c.997G>A	c.(997-999)GAA>AAA	p.E333K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E333K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E333K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	333						cytoplasm	protein binding	p.E333K(1)		skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TGTGATTTTTCCATTTGACCT	0.428													45	77					0	0	0.009718	0	0
SLC16A14	151473	broad.mit.edu	37	2	230911037	230911037	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:230911037C>T	uc002vqd.1	-	4	1168	c.805G>A	c.(805-807)GAT>AAT	p.D269N	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.D269N|SLC16A14_uc002vqf.2_Missense_Mutation_p.D269N	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	269	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		CCGGCCTGATCGGGGCACTCC	0.577													47	58					0	0	0.003610	0	0
CAB39	51719	broad.mit.edu	37	2	231663564	231663564	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:231663564C>T	uc002vqx.2	+	5	951	c.519C>T	c.(517-519)GTC>GTT	p.V173V	CAB39_uc010fxr.2_Silent_p.V173V|CAB39_uc010fxq.2_Silent_p.V173V	NM_016289	NP_057373	Q9Y376	CAB39_HUMAN	calcium binding protein 39	173					cell cycle arrest|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol	kinase binding			central_nervous_system(1)	1		all_lung(227;4.63e-07)|all_hematologic(139;1.83e-06)|Lung NSC(271;2.11e-05)|Acute lymphoblastic leukemia(138;5.51e-05)|Hepatocellular(293;0.0207)|Lung SC(224;0.187)		all cancers(144;1.64e-12)|Epithelial(121;5.29e-11)|LUSC - Lung squamous cell carcinoma(224;0.0154)|Lung(119;0.0177)|COAD - Colon adenocarcinoma(134;0.226)		TCAGATATGTCGAAATGTCAA	0.348													14	15					0	0	0.002450	0	0
ALPI	248	broad.mit.edu	37	2	233322730	233322730	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:233322730G>A	uc002vst.3	+	8	956	c.879G>A	c.(877-879)ACG>ACA	p.T293T	ALPI_uc002vsu.3_Silent_p.T204T	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	293					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CCGGAGACACGAAATATGAGA	0.622													22	28					0	0	0.003330	0	0
SAG	6295	broad.mit.edu	37	2	234247329	234247329	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:234247329G>A	uc002vuh.2	+	12	1340	c.952G>A	c.(952-954)GAG>AAG	p.E318K	SAG_uc010zmq.1_Missense_Mutation_p.E184K	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	318					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		CAGCATTAAGGAGGGCATAGA	0.567													34	47					0	0	0.006230	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545447	234545447	+	Silent	SNP	C	T	T	rs142395215	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:234545447C>T	uc002vur.2	+	1	325	c.279C>T	c.(277-279)TTC>TTT	p.F93F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Silent_p.F93F	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	93					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		TCATGGTTTTCGCCCATGCTC	0.418													60	65					0	0	0.003610	0	0
TRPM8	79054	broad.mit.edu	37	2	234891807	234891807	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr2:234891807C>T	uc002vvh.2	+	20	2740	c.2700C>T	c.(2698-2700)TTC>TTT	p.F900F	TRPM8_uc010fyj.2_Silent_p.F478F|TRPM8_uc010fyk.2_RNA	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	900	Extracellular (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	GGTGGATATTCCGTTCGGTCA	0.567													59	57					0	0	0.003610	0	0
ANGPT4	51378	broad.mit.edu	37	20	861886	861886	+	Silent	SNP	C	T	T	rs148851474		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:861886C>T	uc002wei.2	-	5	982	c.879G>A	c.(877-879)GAG>GAA	p.E293E	ANGPT4_uc010zpn.1_Silent_p.E287E	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	293	Fibrinogen C-terminal.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						AGCGCTGGATCTCTGCACAGT	0.572													15	27					0	0	0.004990	0	0
TGM3	7053	broad.mit.edu	37	20	2291059	2291059	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:2291059G>A	uc002wfx.3	+	3	514	c.417G>A	c.(415-417)CTG>CTA	p.L139L		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	139					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	ACCCCTGGCTGAATGGTAGGT	0.512													83	83					0	0	0.003610	0	0
TGM3	7053	broad.mit.edu	37	20	2321101	2321101	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:2321101G>A	uc002wfx.3	+	13	2053	c.1956G>A	c.(1954-1956)AAG>AAA	p.K652K		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	652					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TAGGGCCCAAGGAGGGGTCCC	0.617													33	59					0	0	0.004878	0	0
ZNF343	79175	broad.mit.edu	37	20	2464164	2464164	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:2464164A>G	uc002wge.1	-	6	1931	c.1443T>C	c.(1441-1443)CTT>CTC	p.L481L	ZNF343_uc010gao.1_Silent_p.L481L|ZNF343_uc002wgd.1_Silent_p.L391L	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343	481	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCTGGTGGACAAGGAGGAGTG	0.527													23	44					0	0	0.002780	0	0
TMC2	117532	broad.mit.edu	37	20	2559842	2559842	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:2559842C>T	uc002wgf.1	+	6	711	c.696C>T	c.(694-696)ATC>ATT	p.I232I	TMC2_uc002wgg.1_Silent_p.I216I|TMC2_uc010zpw.1_Silent_p.I64I|TMC2_uc010zpx.1_Silent_p.I63I	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	232	Arg/Asp/Glu/Lys-rich (highly charged).|Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CTCAATGTATCCCCTGGGAAA	0.368													16	14					0	0	0.004007	0	0
TMC2	117532	broad.mit.edu	37	20	2592879	2592879	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:2592879C>T	uc002wgf.1	+	13	1651	c.1636C>T	c.(1636-1638)CTG>TTG	p.L546L	TMC2_uc002wgg.1_Silent_p.L530L|TMC2_uc010zpw.1_Silent_p.L378L|TMC2_uc010zpx.1_Silent_p.L377L	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	546	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						TCACTGGACTCTGTTTAACTA	0.512													39	42					0	0	0.008740	0	0
VPS16	64601	broad.mit.edu	37	20	2846048	2846048	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:2846048C>T	uc002whe.2	+	22	2226	c.2178C>T	c.(2176-2178)CTC>CTT	p.L726L	VPS16_uc002whh.2_Intron|PTPRA_uc002whj.2_Intron|VPS16_uc002whf.2_Silent_p.L582L|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Silent_p.L412L|VPS16_uc002whi.2_Silent_p.L210L	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	726					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						CCTGCAGGCTCTGGTGGCTGA	0.572													12	18					0	0	0.002450	0	0
PTPRA	5786	broad.mit.edu	37	20	3005228	3005228	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:3005228C>T	uc010zqd.1	+	16	1925	c.1608C>T	c.(1606-1608)ATC>ATT	p.I536I	PTPRA_uc002whj.2_Silent_p.I525I|PTPRA_uc002whk.2_Silent_p.I516I|PTPRA_uc002whl.2_Silent_p.I516I|PTPRA_uc002whm.2_Silent_p.I292I|PTPRA_uc002whn.2_Silent_p.I516I|PTPRA_uc002who.2_Silent_p.I188I	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	525	Cytoplasmic (Potential).				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						ACAACAAAATCCCAGGGACCA	0.443													60	53					0	0	0.003610	0	0
SLC4A11	83959	broad.mit.edu	37	20	3210416	3210416	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:3210416C>T	uc002wig.2	-	13	1592	c.1544G>A	c.(1543-1545)TGG>TAG	p.W515*	SLC4A11_uc010zqe.1_Nonsense_Mutation_p.W542*|SLC4A11_uc002wih.2_Intron|SLC4A11_uc010zqf.1_Nonsense_Mutation_p.W499*	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	515	Extracellular (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						GTAGTACTTCCAGAAGACTGT	0.602													27	35					0	0	0.004289	0	0
GPCPD1	56261	broad.mit.edu	37	20	5545699	5545700	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:5545699_5545700GG>AA	uc002wme.3	-	15	1505_1506	c.1292_1293CC>TT	c.(1291-1293)TCC>TTT	p.S431F	GPCPD1_uc002wmd.3_Missense_Mutation_p.S250F	NM_019593	NP_062539	Q9NPB8	GPCP1_HUMAN	hypothetical protein LOC56261	431	GDPD.				glycerol metabolic process|lipid metabolic process		carbohydrate binding|glycerophosphodiester phosphodiesterase activity				0						TTTCTGAAAAGGAATTTTCCTC	0.322													44	87					0	0	0.004672	0	0
CHGB	1114	broad.mit.edu	37	20	5903299	5903299	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:5903299G>A	uc002wmg.2	+	4	815	c.509G>A	c.(508-510)GGA>GAA	p.G170E	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	170	Poly-Glu.					extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GAGGAGGAGGGAGAGAACTAT	0.507													17	26					0	0	0.006122	0	0
PLCB4	5332	broad.mit.edu	37	20	9317854	9317854	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:9317854G>A	uc002wnf.2	+	4	301	c.165_splice	c.e4+1	p.K55_splice	PLCB4_uc010gbw.1_Splice_Site_p.K55_splice|PLCB4_uc010gbx.2_Splice_Site_p.K55_splice|PLCB4_uc002wne.2_Splice_Site_p.K55_splice	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b						intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TGAAGGCAAGGTATGGCCCAA	0.418													25	32					0	0	0.005443	0	0
PLCB4	5332	broad.mit.edu	37	20	9343600	9343600	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:9343600C>T	uc002wnf.2	+	7	563	c.427C>T	c.(427-429)CCA>TCA	p.P143S	PLCB4_uc010gbw.1_Missense_Mutation_p.P143S|PLCB4_uc010gbx.2_Missense_Mutation_p.P143S|PLCB4_uc002wne.2_Missense_Mutation_p.P143S	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	143					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CAACGTCAGTCCAATGACATG	0.418													13	13					0	0	0.006122	0	0
PLCB4	5332	broad.mit.edu	37	20	9353693	9353693	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:9353693G>A	uc002wnf.2	+	11	823	c.687_splice	c.e11-1	p.I229_splice	PLCB4_uc010gbw.1_Splice_Site_p.I229_splice|PLCB4_uc010gbx.2_Splice_Site_p.I229_splice|PLCB4_uc002wne.2_Splice_Site_p.I229_splice|PLCB4_uc002wnh.2_Splice_Site_p.I76_splice	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b						intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTTCTTTTCAGCAATGGAGAC	0.289													9	9					0	0	0.006214	0	0
C20orf103	24141	broad.mit.edu	37	20	9510314	9510314	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:9510314G>A	uc002wni.1	+	6	919	c.690G>A	c.(688-690)CGG>CGA	p.R230R	C20orf103_uc010zrc.1_Silent_p.R186R	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	230	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			TGGATGAGCGGGAGCAACTGG	0.468													17	23					0	0	0.010504	0	0
C20orf26	26074	broad.mit.edu	37	20	20226842	20226842	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:20226842G>A	uc002wru.2	+	19	2218	c.2142G>A	c.(2140-2142)AGG>AGA	p.R714R	C20orf26_uc010zse.1_Silent_p.R694R|C20orf26_uc002wrw.2_RNA|C20orf26_uc002wrv.2_Silent_p.R70R	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	714										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CTGAACAAAGGAAATTTTTAG	0.343													35	42					0	0	0.006230	0	0
CST8	10047	broad.mit.edu	37	20	23472382	23472382	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:23472382G>A	uc002wth.1	+	2	435	c.78G>A	c.(76-78)AAG>AAA	p.K26K		NM_005492	NP_005483	O60676	CST8_HUMAN	cystatin 8 precursor	26						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					ACCCAAAAAAGAATGAGACAG	0.532													54	65					0	0	0.003610	0	0
DEFB119	245932	broad.mit.edu	37	20	29965206	29965206	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:29965206C>T	uc002wvt.2	-	2	218	c.98G>A	c.(97-99)GGA>GAA	p.G33E	DEFB119_uc002wvs.2_3'UTR	NM_153289	NP_695021	Q8N690	DB119_HUMAN	defensin, beta 119 isoform a precursor	33					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			CCTACAAATTCCACTGTTACC	0.428													48	60					0	0	0.003610	0	0
POFUT1	23509	broad.mit.edu	37	20	30803149	30803149	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:30803149C>T	uc002wxp.2	+	3	373	c.324C>T	c.(322-324)TTC>TTT	p.F108F	POFUT1_uc002wxo.2_Silent_p.F108F|POFUT1_uc010ztt.1_5'UTR|POFUT1_uc010ztu.1_Intron	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	108					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TGGAGGATTTCATGGAGAAGC	0.577													39	51					0	0	0.006999	0	0
SUN5	140732	broad.mit.edu	37	20	31577467	31577467	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:31577467C>T	uc002wyi.2	-	9	665	c.572G>A	c.(571-573)GGA>GAA	p.G191E		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	191					spermatogenesis					skin(1)	1						GATGTAATCTCCGTGTATCAT	0.488													22	35					0	0	0.005443	0	0
C20orf70	140683	broad.mit.edu	37	20	31763300	31763300	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:31763300G>A	uc002wyo.1	+	5	569	c.498G>A	c.(496-498)CAG>CAA	p.Q166Q		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	166						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						AGACACACCAGCCTGTTGCCG	0.527													57	80					0	0	0.003610	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32194867	32194867	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:32194867C>T	uc002wzg.1	+	3	704	c.167C>T	c.(166-168)CCT>CTT	p.P56L	CBFA2T2_uc010zug.1_Intron|CBFA2T2_uc002wze.1_Missense_Mutation_p.P47L|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Missense_Mutation_p.P27L|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	56	Pro-rich.					nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						CCAATAAATCCTGGAGGACCG	0.512													31	33					0	0	0.003755	0	0
GGT7	2686	broad.mit.edu	37	20	33440060	33440060	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:33440060G>A	uc002xay.2	-	12	1528	c.1485C>T	c.(1483-1485)CCC>CCT	p.P495P	GGT7_uc010gex.2_5'Flank|GGT7_uc002xaz.1_Silent_p.P512P	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	495	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						CGCTGCCAAAGGGCTGGTTCA	0.652													17	21					0	0	0.010504	0	0
FAM83C	128876	broad.mit.edu	37	20	33874741	33874741	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:33874741G>A	uc010zux.1	-	4	1959	c.1841C>T	c.(1840-1842)TCC>TTC	p.S614F	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Missense_Mutation_p.S269F	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	614										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			TCTGGCTGAGGAGTTGGTTTC	0.617													21	31					0	0	0.002299	0	0
EPB41L1	2036	broad.mit.edu	37	20	34773072	34773072	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:34773072C>T	uc002xfb.2	+	7	771	c.600C>T	c.(598-600)ATC>ATT	p.I200I	EPB41L1_uc002xeu.2_Silent_p.I138I|EPB41L1_uc010zvo.1_Silent_p.I200I|EPB41L1_uc002xev.2_Silent_p.I200I|EPB41L1_uc002xew.2_Silent_p.I103I|EPB41L1_uc002xex.2_Silent_p.I169I|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Silent_p.I138I	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	200	FERM.				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					GGGCAGACATCATCACGGGCC	0.612													22	36					0	0	0.003330	0	0
SAMHD1	25939	broad.mit.edu	37	20	35547838	35547838	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:35547838G>A	uc002xgh.1	-	7	911	c.781C>T	c.(781-783)CCT>TCT	p.P261S		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	261	HD.				defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				TCTTCTTCAGGGATGAGACCA	0.348													24	33					0	0	0.003330	0	0
RPN2	6185	broad.mit.edu	37	20	35838557	35838557	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:35838557C>T	uc002xgp.2	+	8	1279	c.975C>T	c.(973-975)TTC>TTT	p.F325F	RPN2_uc002xgo.3_Silent_p.F325F|RPN2_uc010gfw.2_Silent_p.F168F|RPN2_uc002xgq.2_Silent_p.F293F	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	325	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AGACATCCTTCACCCCTGTAG	0.468													36	45					0	0	0.003755	0	0
CHD6	84181	broad.mit.edu	37	20	40033886	40033886	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:40033886G>A	uc002xka.1	-	37	7673	c.7495C>T	c.(7495-7497)CCA>TCA	p.P2499S	CHD6_uc002xjz.1_Missense_Mutation_p.P36S	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2499					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				AAGCCAGCTGGAAACCCCACC	0.557													29	35					0	0	0.002096	0	0
PTPRT	11122	broad.mit.edu	37	20	40790031	40790031	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:40790031C>T	uc002xkg.2	-	17	2827	c.2643G>A	c.(2641-2643)ATG>ATA	p.M881I	PTPRT_uc010ggj.2_Missense_Mutation_p.M900I|PTPRT_uc010ggi.2_Missense_Mutation_p.M84I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	881	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGCCTCTCTTCATCTGCGTGA	0.562													22	29					0	0	0.003330	0	0
MYBL2	4605	broad.mit.edu	37	20	42328579	42328579	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:42328579C>T	uc002xlb.1	+	7	1061	c.846C>T	c.(844-846)TCC>TCT	p.S282S	MYBL2_uc010zwj.1_Silent_p.S258S|MYBL2_uc002xla.1_Silent_p.S282S	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	282						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			AGGAAGGCTCCCCACCAGAAA	0.587													6	17					0	0	0.001168	0	0
R3HDML	140902	broad.mit.edu	37	20	42965979	42965979	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:42965979G>A	uc002xls.1	+	1	354	c.182G>A	c.(181-183)AGA>AAA	p.R61K		NM_178491	NP_848586	Q9H3Y0	CRSPL_HUMAN	R3H domain containing-like precursor	61						extracellular region	peptidase inhibitor activity				0		Myeloproliferative disorder(115;0.028)	COAD - Colon adenocarcinoma(18;0.00189)			ATCTCTGTGAGAGACATGAAT	0.617													21	26					0	0	0.002299	0	0
PI3	5266	broad.mit.edu	37	20	43804764	43804764	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:43804764C>T	uc002xng.2	+	2	366	c.342C>T	c.(340-342)TTC>TTT	p.F114F		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	114	WAP.				copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TGGCCTGTTTCGTTCCCCAGT	0.567													38	31					0	0	0.006230	0	0
MATN4	8785	broad.mit.edu	37	20	43933247	43933247	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:43933247G>A	uc002xnn.2	-	3	451	c.264C>T	c.(262-264)CTC>CTT	p.L88L	MATN4_uc002xno.2_Silent_p.L88L|MATN4_uc002xnp.2_Silent_p.L88L|MATN4_uc010zwr.1_Silent_p.L36L|MATN4_uc002xnr.1_Silent_p.L88L|RBPJL_uc002xns.2_5'Flank|RBPJL_uc002xnt.2_5'Flank	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	88	VWFA 1.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				AGAACGCGCGGAGAGGGAAGA	0.642													12	20					0	0	0.004007	0	0
NCOA5	57727	broad.mit.edu	37	20	44692190	44692190	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:44692190G>A	uc002xrd.2	-	6	1487	c.959C>T	c.(958-960)GCC>GTC	p.A320V	NCOA5_uc002xrc.2_Missense_Mutation_p.A208V|NCOA5_uc002xre.2_Missense_Mutation_p.A320V	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	320					regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				CTGCAGGATGGCTTCATCGGC	0.582													21	15					0	0	0.002299	0	0
STAU1	6780	broad.mit.edu	37	20	47741072	47741072	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:47741072G>A	uc002xud.2	-	7	1073	c.662C>T	c.(661-663)TCG>TTG	p.S221L	STAU1_uc002xua.2_Missense_Mutation_p.S140L|STAU1_uc002xub.2_Missense_Mutation_p.S146L|STAU1_uc002xuc.2_Missense_Mutation_p.S140L|STAU1_uc002xue.2_Missense_Mutation_p.S140L|STAU1_uc002xuf.2_Missense_Mutation_p.S146L|STAU1_uc002xug.2_Missense_Mutation_p.S221L	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	221	DRBM 2.					microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			CTCCCCAACCGAAACCTTGGT	0.498													39	45					0	0	0.008740	0	0
DDX27	55661	broad.mit.edu	37	20	47859199	47859199	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:47859199C>T	uc002xuh.2	+	19	2339	c.2278C>T	c.(2278-2280)CTG>TTG	p.L760L		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	760						nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CAAGAAGGCCCTGAAACAGTA	0.338													45	59					0	0	0.003610	0	0
RNF114	55905	broad.mit.edu	37	20	48562680	48562680	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:48562680C>T	uc002xux.2	+	4	442	c.406C>T	c.(406-408)CCA>TCA	p.P136S	RNF114_uc010zyo.1_Missense_Mutation_p.P136S|RNF114_uc002xuy.2_RNA	NM_018683	NP_061153	Q9Y508	RN114_HUMAN	zinc finger protein 313	136					cell differentiation|multicellular organismal development|spermatogenesis	intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						CAGGAATGTTCCAAACCGTTA	0.408													19	18					0	0	0.002299	0	0
ATP9A	10079	broad.mit.edu	37	20	50221426	50221426	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:50221426G>A	uc002xwg.1	-	27	2937	c.2937C>T	c.(2935-2937)CTC>CTT	p.L979L	ATP9A_uc010gih.1_Silent_p.L843L|ATP9A_uc002xwf.1_Silent_p.L151L	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	979	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						CCACTGTCATGAGCCAGTGCC	0.587													13	12					0	0	0.001368	0	0
PCK1	5105	broad.mit.edu	37	20	56140524	56140524	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:56140524C>T	uc002xyn.3	+	10	1696	c.1533C>T	c.(1531-1533)ATC>ATT	p.I511I	PCK1_uc010zzm.1_Silent_p.I194I	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	511					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			TGCCCAAGATCTTCCATGTCA	0.562													22	30					0	0	0.002780	0	0
ZNF831	128611	broad.mit.edu	37	20	57766581	57766581	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:57766581G>A	uc002yan.2	+	1	507	c.507G>A	c.(505-507)GAG>GAA	p.E169E		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	169						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ACACGGGTGAGAGGCCCTTCC	0.612													35	65					0	0	0.004878	0	0
ZNF831	128611	broad.mit.edu	37	20	57829327	57829327	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:57829327G>A	uc002yan.2	+	5	4563	c.4563G>A	c.(4561-4563)GGG>GGA	p.G1521G		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1521						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGACTGCAGGGAGGACTCTGA	0.522													14	14					0	0	0.002450	0	0
C20orf166	128826	broad.mit.edu	37	20	61167705	61167705	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:61167705G>A	uc011aaj.1	+	4	954	c.175G>A	c.(175-177)GAA>AAA	p.E59K		NM_178463	NP_848558	Q9H1L0	CT166_HUMAN	hypothetical protein LOC128826	59											0	Breast(26;1.04e-08)		BRCA - Breast invasive adenocarcinoma(19;7.17e-06)			TCATTTGAAAGAAATTCTTCT	0.478													12	20					0	0	0.001368	0	0
ZNF512B	57473	broad.mit.edu	37	20	62592680	62592680	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr20:62592680G>A	uc002yhl.1	-	16	2463	c.2409C>T	c.(2407-2409)ATC>ATT	p.I803I		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	803	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					GGGTCTTCAGGATGTGGTATT	0.642													13	21					0	0	0.002450	0	0
TPTE	7179	broad.mit.edu	37	21	10908892	10908892	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:10908892G>A	uc002yip.1	-	23	1821	c.1453C>T	c.(1453-1455)CTT>TTT	p.L485F	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.L467F|TPTE_uc002yir.1_Missense_Mutation_p.L447F|TPTE_uc010gkv.1_Missense_Mutation_p.L347F	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	485	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TATGTAGGAAGATTCTAAAAA	0.269													6	61					0	0	0.003080	0	0
TPTE	7179	broad.mit.edu	37	21	10910308	10910308	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:10910308G>A	uc002yip.1	-	22	1816	c.1448C>T	c.(1447-1449)TCG>TTG	p.S483L	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.S465L|TPTE_uc002yir.1_Missense_Mutation_p.S445L|TPTE_uc010gkv.1_Missense_Mutation_p.S345L	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	483	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATTACTCACCGAATAGAAAAA	0.373													16	115					0	0	0.010504	0	0
TPTE	7179	broad.mit.edu	37	21	10996107	10996107	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:10996107G>A	uc002yis.1	-	12		c.2079C>T						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGCCCAGTTCGACTTCTTTGC	0.413													13	69					0	0	0.004007	0	0
LIPI	149998	broad.mit.edu	37	21	15561577	15561577	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:15561577G>A	uc002yjm.2	-	2	283	c.273C>T	c.(271-273)TTC>TTT	p.F91F	LIPI_uc010gkw.1_Silent_p.F24F	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	70					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		TTTGTGTGTTGAAATTAACAT	0.383													44	32					0	0	0.002852	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28296687	28296687	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:28296687C>T	uc002ymg.2	-	8	3207	c.2478G>A	c.(2476-2478)ACG>ACA	p.T826T		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	826	Spacer.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						GAATTTCCTTCGTGGCAGAGT	0.443													59	65					0	0	0.003610	0	0
RNF160	26046	broad.mit.edu	37	21	30365209	30365209	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:30365209G>A	uc002ymr.2	-	1	69	c.56C>T	c.(55-57)TCT>TTT	p.S19F		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	Error:Variant_position_missing_in_O94822_after_alignment							ligase activity|zinc ion binding				0						GGCGGCGGAAGAGGACACCCT	0.632													9	5					0	0	0.004482	0	0
KRTAP27-1	643812	broad.mit.edu	37	21	31709432	31709432	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:31709432G>A	uc002ynx.1	-	1	581	c.555C>T	c.(553-555)CTC>CTT	p.L185L		NM_001077711	NP_001071179	Q3LI81	KR271_HUMAN	keratin associated protein 27-1	185						intermediate filament				ovary(2)	2						AAGATTCCAGGAGTTGTGGCT	0.468													24	20					0	0	0.002780	0	0
KRTAP13-2	337959	broad.mit.edu	37	21	31744112	31744112	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:31744112G>A	uc002ynz.3	-	1	446	c.420C>T	c.(418-420)CTC>CTT	p.L140L		NM_181621	NP_853652	Q52LG2	KR132_HUMAN	keratin associated protein 13-2	140						intermediate filament					0						ATCCATAGCCGAGGGAAGGGA	0.567													12	22					0	0	0.001368	0	0
SYNJ1	8867	broad.mit.edu	37	21	34072229	34072229	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:34072229G>A	uc002yqh.2	-	4	515	c.515C>T	c.(514-516)TCT>TTT	p.S172F	SYNJ1_uc011ads.1_Missense_Mutation_p.S133F|SYNJ1_uc002yqf.2_Missense_Mutation_p.S133F|SYNJ1_uc002yqg.2_Missense_Mutation_p.S133F|SYNJ1_uc002yqi.2_Missense_Mutation_p.S172F	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	133	SAC.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						GCCAGATGCAGACCATGCAAA	0.383													13	14					0	0	0.001855	0	0
ATP5O	539	broad.mit.edu	37	21	35275893	35275893	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:35275893A>T	uc002ytl.2	-	7	670	c.579T>A	c.(577-579)TAT>TAA	p.Y193*	DONSON_uc002ysn.1_Intron	NM_001697	NP_001688	P48047	ATPO_HUMAN	mitochondrial ATP synthase, O subunit precursor	193					ATP catabolic process|mitochondrial ATP synthesis coupled proton transport|respiratory electron transport chain	mitochondrial proton-transporting ATP synthase complex|plasma membrane|proton-transporting ATP synthase complex, catalytic core F(1)	drug binding|hydrogen ion transporting ATP synthase activity, rotational mechanism			ovary(1)	1						ACATGTCAACATATTTCTCGC	0.403													39	29					0	0	0.002522	0	0
CLDN14	23562	broad.mit.edu	37	21	37833619	37833619	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:37833619G>A	uc002yvk.1	-	2	517	c.375C>T	c.(373-375)TTC>TTT	p.F125F	CLDN14_uc002yvn.1_Silent_p.F125F|CLDN14_uc002yvo.1_Silent_p.F125F|CLDN14_uc002yvl.1_Silent_p.F125F|CLDN14_uc002yvm.1_Silent_p.F125F	NM_012130	NP_036262	O95500	CLD14_HUMAN	claudin 14	125	Helical; (Potential).				calcium-independent cell-cell adhesion|protein complex assembly|tight junction assembly	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CGGCCAGGATGAAGAGGGTGC	0.647													22	31					0	0	0.006320	0	0
DSCAM	1826	broad.mit.edu	37	21	41684095	41684095	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:41684095G>A	uc002yyq.1	-	9	2427	c.1975C>T	c.(1975-1977)CTC>TTC	p.L659F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	659	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATGAGCGAGAGATTGGAAATC	0.537													45	34					0	0	0.003214	0	0
DSCAM	1826	broad.mit.edu	37	21	41711215	41711215	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:41711215C>T	uc002yyq.1	-	7	1790	c.1338G>A	c.(1336-1338)CCG>CCA	p.P446P	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	446	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCTTGAGAATCGGGTCATCGT	0.582													15	21					0	0	0.004007	0	0
DSCAM	1826	broad.mit.edu	37	21	41711223	41711223	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:41711223C>T	uc002yyq.1	-	7	1782	c.1330G>A	c.(1330-1332)GAT>AAT	p.D444N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	444	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATCGGGTCATCGTCCAGGGTC	0.567													12	20					0	0	0.002450	0	0
DSCAM	1826	broad.mit.edu	37	21	41719705	41719705	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:41719705C>T	uc002yyq.1	-	6	1554	c.1102G>A	c.(1102-1104)GAA>AAA	p.E368K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	368	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATAAGGTTTTCGTGGTTGATC	0.512													109	154					0	0	0.003610	0	0
UMODL1	89766	broad.mit.edu	37	21	43547300	43547300	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:43547300A>G	uc002zaf.1	+	19	3478	c.3478A>G	c.(3478-3480)ACC>GCC	p.T1160A	UMODL1_uc002zad.1_Missense_Mutation_p.T1088A|UMODL1_uc002zae.1_Missense_Mutation_p.T1216A|UMODL1_uc002zag.1_Missense_Mutation_p.T1288A|UMODL1_uc002zal.1_Missense_Mutation_p.T110A|UMODL1_uc010gpa.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1160	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GTGCTGGGCAACCCCGTCTAG	0.572													27	19					0	0	0.003954	0	0
ABCG1	9619	broad.mit.edu	37	21	43711739	43711739	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:43711739G>A	uc002zaq.2	+	13	1768	c.1662G>A	c.(1660-1662)CTG>CTA	p.L554L	ABCG1_uc002zan.2_Silent_p.L544L|ABCG1_uc002zam.2_Silent_p.L520L|ABCG1_uc002zao.2_Silent_p.L539L|ABCG1_uc002zap.2_Silent_p.L542L|ABCG1_uc002zar.2_Silent_p.L553L|ABCG1_uc011aev.1_Silent_p.L565L|ABCG1_uc010gpb.1_Missense_Mutation_p.D195N	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	554	Helical; (Potential).|ABC transmembrane type-2.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	TGGGCCTGCTGATCGGAGCCG	0.667													6	12					0	0	0.001168	0	0
UBASH3A	53347	broad.mit.edu	37	21	43833249	43833249	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:43833249C>T	uc002zbe.2	+	4	507	c.471C>T	c.(469-471)CTC>CTT	p.L157L	UBASH3A_uc002zbf.2_Silent_p.L157L|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Silent_p.L157L	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	157						cytosol|nucleus				ovary(3)	3						TCAGCTACCTCGGCTTCTTCG	0.632													38	39					0	0	0.006999	0	0
PDXK	8566	broad.mit.edu	37	21	45173471	45173471	+	Silent	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:45173471C>G	uc002zdm.3	+	9	828	c.630C>G	c.(628-630)CCC>CCG	p.P210P	PDXK_uc010gpj.2_Silent_p.P210P|PDXK_uc002zdn.3_Silent_p.P182P|PDXK_uc002zdq.3_Silent_p.P137P	NM_003681	NP_003672	O00764	PDXK_HUMAN	pyridoxal kinase	210					cell proliferation|pyridoxal 5'-phosphate salvage	cytosol	ATP binding|lithium ion binding|magnesium ion binding|potassium ion binding|protein homodimerization activity|pyridoxal kinase activity|pyridoxal phosphate binding|sodium ion binding|zinc ion binding				0				Colorectal(79;0.109)|READ - Rectum adenocarcinoma(84;0.161)|STAD - Stomach adenocarcinoma(101;0.18)	Pyridoxal(DB00147)|Pyridoxine(DB00165)	TAGGGAATCCCGCTGGCTCCG	0.637													7	13					0	0	0.003080	0	0
RRP1	8568	broad.mit.edu	37	21	45215096	45215096	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:45215096C>T	uc002zds.2	+	5	480	c.387C>T	c.(385-387)TCC>TCT	p.S129S	RRP1_uc011aez.1_Silent_p.S129S|RRP1_uc010gpk.1_Intron|RRP1_uc010gpl.1_Silent_p.S27S|RRP1_uc010gpm.1_5'Flank	NM_003683	NP_003674	P56182	RRP1_HUMAN	ribosomal RNA processing 1 homolog	129					rRNA processing	nucleolus|preribosome, small subunit precursor					0				COAD - Colon adenocarcinoma(84;0.00753)|Colorectal(79;0.0157)|STAD - Stomach adenocarcinoma(101;0.171)		TGAACGAGTCCTTGAAGGTTC	0.587													34	49					0	0	0.004289	0	0
C21orf29	54084	broad.mit.edu	37	21	45941922	45941922	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:45941922G>A	uc002zfe.1	-	9	1476	c.1410C>T	c.(1408-1410)ACC>ACT	p.T470T	C21orf29_uc010gpv.1_Silent_p.T402T	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	470	EAR 4.				cell adhesion	extracellular region	structural molecule activity				0						AGGTGGCGATGGTCTGGTTGG	0.617													60	74					0	0	0.003610	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994385	45994385	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:45994385C>T	uc002zfk.1	+	1	780	c.750C>T	c.(748-750)TGC>TGT	p.C250C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	250	36 X 5 AA repeats of C-C-X(3).|23.					keratin filament					0						CCTCTTCATGCTGCCAGCAGT	0.627													64	66					0	0	0.003610	0	0
COL18A1	80781	broad.mit.edu	37	21	46927503	46927503	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:46927503G>A	uc011afs.1	+	38	4502	c.4481G>A	c.(4480-4482)GGG>GAG	p.G1494E	COL18A1_uc002zhg.2_Missense_Mutation_p.G1079E|COL18A1_uc002zhi.2_Missense_Mutation_p.G1259E|SLC19A1_uc010gpy.1_Intron|COL18A1_uc002zhj.2_Missense_Mutation_p.G60E|COL18A1_uc002zhk.2_5'UTR	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1497	Nonhelical region 11 (NC11).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CTCCCACGAGGGACGGTAAGG	0.617													5	6					0	0	0.001168	0	0
DIP2A	23181	broad.mit.edu	37	21	47924366	47924366	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:47924366C>T	uc002zjo.2	+	6	931	c.748C>T	c.(748-750)CGG>TGG	p.R250W	DIP2A_uc011afy.1_Missense_Mutation_p.R186W|DIP2A_uc011afz.1_Missense_Mutation_p.R250W|DIP2A_uc002zjl.2_Missense_Mutation_p.R250W|DIP2A_uc002zjm.2_Missense_Mutation_p.R250W|DIP2A_uc010gql.2_Intron|DIP2A_uc002zjn.2_Missense_Mutation_p.R250W|DIP2A_uc002zjp.1_5'UTR	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	250					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		AAGTGTTCCTCGGGGGTGCAG	0.532													13	18					0	0	0.003163	0	0
DIP2A	23181	broad.mit.edu	37	21	47986563	47986563	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:47986563C>T	uc002zjo.2	+	37	4613	c.4430C>T	c.(4429-4431)TCT>TTT	p.S1477F	DIP2A_uc011afz.1_Missense_Mutation_p.S1473F|DIP2A_uc002zjs.2_Missense_Mutation_p.S157F|DIP2A_uc002zjt.2_RNA	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	1477					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		ATTGAGACCTCTGTCATCCGA	0.592													25	37					0	0	0.006320	0	0
POTEH	23784	broad.mit.edu	37	22	16279248	16279248	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:16279248C>T	uc010gqp.2	-	4	1027	c.975G>A	c.(973-975)GTG>GTA	p.V325V	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.V44V|POTEH_uc002zlj.1_Silent_p.V160V	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TTAAAAATTTCACCACTTGCT	0.328													60	478					0	0	0.003610	0	0
POTEH	23784	broad.mit.edu	37	22	16287490	16287490	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:16287490C>T	uc010gqp.2	-	1	448	c.396G>A	c.(394-396)AGG>AGA	p.R132R	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_Intron	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	132										skin(1)	1						CCATCTTGCTCCTGAGTGTCT	0.612													62	250					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	22	18844768	18844768	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:18844768G>A	uc002zoe.2	+	4		c.2022G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GCCTCTGAGGGCAGCAGTGCA	0.562													3	10					0	0	0.009096	0	0
GNB1L	54584	broad.mit.edu	37	22	19776448	19776448	+	Silent	SNP	G	A	A	rs147234999		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:19776448G>A	uc002zqe.1	-	7	1162	c.768C>T	c.(766-768)ATC>ATT	p.I256I	GNB1L_uc002zqd.1_Silent_p.I112I|GNB1L_uc002zqf.1_Silent_p.I256I	NM_053004	NP_443730	Q9BYB4	GNB1L_HUMAN	guanine nucleotide binding protein	256	WD 5.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	internal side of plasma membrane|intracellular				breast(1)	1	Colorectal(54;0.0993)					TGACCTCGGCGATCCCGGGAT	0.642													31	23					0	0	0.002836	0	0
PPIL2	23759	broad.mit.edu	37	22	22036806	22036806	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:22036806C>T	uc010gtj.1	+	8	584	c.468C>T	c.(466-468)ATC>ATT	p.I156I	PPIL2_uc002zvh.3_Silent_p.I156I|PPIL2_uc002zvi.3_Silent_p.I156I|PPIL2_uc002zvg.3_Silent_p.I156I|PPIL2_uc011aij.1_Silent_p.I135I	NM_148175	NP_680480	Q13356	PPIL2_HUMAN	peptidylprolyl isomerase-like 2 isoform a	156					blood coagulation|leukocyte migration|protein folding|protein polyubiquitination	Golgi lumen|nucleus|ubiquitin ligase complex	peptidyl-prolyl cis-trans isomerase activity|ubiquitin-ubiquitin ligase activity			ovary(2)	2	Colorectal(54;0.105)					AGGACATCATCACCCTCCAGG	0.637													15	13					0	0	0.003163	0	0
LOC96610	96610	broad.mit.edu	37	22	22550398	22550398	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:22550398G>A	uc011aim.1	+	11		c.892G>A								Parts of antibodies, mostly variable regions.												0						TGCTGACTCAGCCCCACTCTG	0.557											OREG0026353	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	15					0	0	0.001368	0	0
LOC96610	96610	broad.mit.edu	37	22	23214093	23214093	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:23214093C>T	uc011aim.1	+	326		c.14170C>T								Parts of antibodies, mostly variable regions.												0						GATCCCCGATCGCTTCATGGG	0.557													51	69					0	0	0.003610	0	0
LOC96610	96610	broad.mit.edu	37	22	23237936	23237936	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:23237936C>T	uc011aim.1	+	363		c.15339C>T			uc011aiw.1_3'UTR|uc010gtu.1_RNA|uc002zws.2_Intron					Parts of antibodies, mostly variable regions.												0						GGAGGGGTCTCTCTCCCCATC	0.507													9	11					0	0	0.004482	0	0
BCR	613	broad.mit.edu	37	22	23630295	23630295	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:23630295C>T	uc002zww.2	+	12	3134	c.2538C>T	c.(2536-2538)TTC>TTT	p.F846F	BCR_uc002zwx.2_Silent_p.F846F|BCR_uc011aiy.1_Silent_p.F435F|BCR_uc002zwy.1_Silent_p.F132F	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	846	PH.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						GTTACACGTTCCTGATCTCCT	0.562			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								31	40					0	0	0.003271	0	0
SMARCB1	6598	broad.mit.edu	37	22	24167437	24167437	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:24167437C>T	uc002zyb.2	+	7	1028	c.821C>T	c.(820-822)TCC>TTC	p.S274F	SMARCB1_uc002zya.2_Intron|SMARCB1_uc002zyc.2_Missense_Mutation_p.S265F|SMARCB1_uc002zyd.2_Missense_Mutation_p.S283F	NM_003073	NP_003064	Q12824	SNF5_HUMAN	SWI/SNF related, matrix associated, actin	274	2.|2 X approximate tandem repeats.				cell cycle|chromatin remodeling|DNA integration|interspecies interaction between organisms|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|retroviral genome replication|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleolus|nucleoplasm|SWI/SNF complex	p53 binding	p.?(6)|p.L266_*386del(1)		soft_tissue(193)|central_nervous_system(172)|haematopoietic_and_lymphoid_tissue(23)|meninges(5)|skin(5)|bone(4)|ovary(2)|endometrium(1)|lung(1)|pancreas(1)	407		Medulloblastoma(6;2.2e-09)|all_neural(6;2.73e-05)				GGAAACATTTCCCTGGTGGAC	0.572			D|N|F|S		malignant rhabdoid 	malignant rhabdoid			Rhabdoid_Predisposition_syndrome|Schwannomatosis				24	41					0	0	0.008361	0	0
GGT1	2678	broad.mit.edu	37	22	25016896	25016896	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:25016896G>A	uc003aan.1	+	9	1079	c.592G>A	c.(592-594)GAT>AAT	p.D198N	GGT1_uc003aas.1_Missense_Mutation_p.D198N|GGT1_uc003aat.1_Missense_Mutation_p.D198N|GGT1_uc003aau.1_Missense_Mutation_p.D198N|GGT1_uc003aav.1_Missense_Mutation_p.D198N|GGT1_uc003aaw.1_Missense_Mutation_p.D198N|GGT1_uc003aax.1_Missense_Mutation_p.D198N	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	198	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	GTTCTGCCGGGATAGAAAGGT	0.642													7	16					0	0	0.006214	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688826	26688826	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:26688826C>T	uc003acb.2	+	2	705	c.549C>T	c.(547-549)CCC>CCT	p.P183P	SEZ6L_uc003acc.2_Silent_p.P183P|SEZ6L_uc011akc.1_Silent_p.P183P|SEZ6L_uc003acd.2_Silent_p.P183P|SEZ6L_uc011akd.1_Silent_p.P183P|SEZ6L_uc003ace.2_Silent_p.P183P|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	183	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CAGAAGTGCCCCTTTGGCTGG	0.657													24	23					0	0	0.008361	0	0
SEZ6L	23544	broad.mit.edu	37	22	26736483	26736483	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:26736483G>A	uc003acb.2	+	10	2253	c.2097G>A	c.(2095-2097)GGG>GGA	p.G699G	SEZ6L_uc003acc.2_Silent_p.G699G|SEZ6L_uc011akc.1_Silent_p.G699G|SEZ6L_uc003acd.2_Silent_p.G699G|SEZ6L_uc011akd.1_Silent_p.G699G|SEZ6L_uc003ace.2_Silent_p.G699G|SEZ6L_uc003acf.1_Silent_p.G472G|SEZ6L_uc010gvc.1_Silent_p.G472G	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	699	CUB 3.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						AGTACCTTGGGAACAGTGGCC	0.547													47	51					0	0	0.003610	0	0
HPS4	89781	broad.mit.edu	37	22	26868811	26868811	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:26868811G>A	uc003acl.2	-	5	1030	c.371C>T	c.(370-372)TCC>TTC	p.S124F	HPS4_uc003aci.2_Missense_Mutation_p.S119F|HPS4_uc003acj.2_5'UTR|HPS4_uc003ack.2_5'UTR|HPS4_uc003acn.2_5'UTR|HPS4_uc010gvd.1_Missense_Mutation_p.S124F|HPS4_uc003ach.2_5'Flank	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a	124					lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						ATAAGCTAGGGAAACAGGTCC	0.468									Hermansky-Pudlak_syndrome				52	73					0	0	0.003610	0	0
LIMK2	3985	broad.mit.edu	37	22	31669485	31669485	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:31669485C>G	uc003akh.2	+	14	1751	c.1606C>G	c.(1606-1608)CTC>GTC	p.L536V	LIMK2_uc003akg.2_Missense_Mutation_p.L453V|LIMK2_uc003aki.2_Missense_Mutation_p.L290V|LIMK2_uc003akj.2_Missense_Mutation_p.L515V|LIMK2_uc003akk.2_Missense_Mutation_p.L515V|LIMK2_uc011aln.1_Missense_Mutation_p.L453V	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	536	Protein kinase.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						TGGGATCGTTCTCTGTGAGGT	0.547											OREG0026477	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	22					0	0	0.002445	0	0
SLC5A4	6527	broad.mit.edu	37	22	32647781	32647781	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:32647781G>A	uc003ami.2	-	3	290	c.288C>T	c.(286-288)GTC>GTT	p.V96V		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	96	Cytoplasmic (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						TTACGGTGGCGACTCCTGAAG	0.423													51	63					0	0	0.003610	0	0
HMGXB4	10042	broad.mit.edu	37	22	35661066	35661066	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:35661066C>T	uc003anl.2	+	5	859	c.685C>T	c.(685-687)CGG>TGG	p.R229W	HMGXB4_uc011amh.1_Missense_Mutation_p.R120W|HMGXB4_uc003ank.2_Missense_Mutation_p.R120W	NM_001003681	NP_001003681	Q9UGU5	HMGX4_HUMAN	high-mobility group protein 2-like 1	229					endosome to lysosome transport|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	NURF complex	DNA binding			breast(1)|skin(1)	2						GAAATCAGCTCGGGATGAGCA	0.468													64	74					0	0	0.003610	0	0
APOL3	80833	broad.mit.edu	37	22	36537752	36537752	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:36537752G>A	uc003aot.2	-	3	743	c.705C>T	c.(703-705)ATC>ATT	p.I235I	APOL3_uc003aoq.2_Silent_p.I164I|APOL3_uc003aor.2_Silent_p.I164I|APOL3_uc003aos.2_Silent_p.I164I|APOL3_uc003aou.2_Silent_p.I35I|APOL3_uc003aov.2_Silent_p.I35I	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	235					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						TGCTGGTGGTGATCCCAGTCA	0.547													9	12					0	0	0.006214	0	0
CACNG2	10369	broad.mit.edu	37	22	36960495	36960495	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:36960495C>T	uc003aps.1	-	4	1157	c.875G>A	c.(874-876)AGG>AAG	p.R292K		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	292					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						GCTGTTATCCCTGTCGGAGTT	0.592													14	29					0	0	0.004990	0	0
CSF2RB	1439	broad.mit.edu	37	22	37334429	37334430	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:37334429_37334430CC>TT	uc003aqa.3	+	14	2796_2797	c.2579_2580CC>TT	c.(2578-2580)CCC>CTT	p.P860L	CSF2RB_uc003aqc.3_Missense_Mutation_p.P866L	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	860	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	GTCAAGAAGCCCCCAGGCCAGG	0.619													66	71					0	0	0.004672	0	0
ELFN2	114794	broad.mit.edu	37	22	37769772	37769772	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:37769772G>A	uc003asq.3	-	3	2589	c.1803C>T	c.(1801-1803)TTC>TTT	p.F601F		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	601	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					GAGGCGAAAGGAAGCTGGGCC	0.706													6	4					0	0	0.001984	0	0
ELFN2	114794	broad.mit.edu	37	22	37771307	37771307	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:37771307C>T	uc003asq.3	-	3	1054	c.268G>A	c.(268-270)GAG>AAG	p.E90K		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	90	LRR 2.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TAGGAGATCTCGTTCTTGGTG	0.597													30	19					0	0	0.008361	0	0
EIF3L	51386	broad.mit.edu	37	22	38273863	38273863	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:38273863C>T	uc003auf.2	+	11	1347	c.1260C>T	c.(1258-1260)TTC>TTT	p.F420F	EIF3L_uc003aue.1_Silent_p.F420F|EIF3L_uc011ann.1_Silent_p.F372F|EIF3L_uc003aug.2_Silent_p.F312F|EIF3L_uc003auh.2_Silent_p.F153F	NM_016091	NP_057175	Q9Y262	EIF3L_HUMAN	eukaryotic translation initiation factor 3	420						eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1						GCCCCAAGTTCCTGTCGCCTG	0.502													31	29					0	0	0.002096	0	0
APOBEC3F	200316	broad.mit.edu	37	22	39439003	39439003	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:39439003C>T	uc003aww.2	+	2	372	c.79C>T	c.(79-81)CTT>TTT	p.L27F	APOBEC3F_uc003awv.2_Missense_Mutation_p.L27F|APOBEC3F_uc011aog.1_Missense_Mutation_p.L27F	NM_145298	NP_660341	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	27					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding				0	Melanoma(58;0.04)					TAGACCCATCCTTTCTCGTCG	0.488													12	13					0	0	0.000978	0	0
APOBEC3H	164668	broad.mit.edu	37	22	39497339	39497339	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:39497339G>A	uc011aoh.1	+	3	314	c.248G>A	c.(247-249)AGC>AAC	p.S83N	APOBEC3H_uc011aoi.1_5'Flank|APOBEC3H_uc003axa.3_5'Flank	NM_181773	NP_861438	Q6NTF7	ABC3H_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	83					DNA cytosine deamination|negative regulation of retroviral genome replication|negative regulation of transposition	cytoplasm|nucleus	cytidine deaminase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Melanoma(58;0.04)					CTCACGTGGAGCCCCTGCTCC	0.537													22	34					0	0	0.001882	0	0
MKL1	57591	broad.mit.edu	37	22	40827451	40827451	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:40827451G>A	uc003ayv.1	-	3	304	c.97C>T	c.(97-99)CGG>TGG	p.R33W	MKL1_uc003ayw.1_Missense_Mutation_p.R33W|MKL1_uc010gye.1_Missense_Mutation_p.R33W|MKL1_uc010gyf.1_Missense_Mutation_p.R33W	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	33	RPEL 1.|Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CTCTCCGGCCGGGAACGAATC	0.473			T	RBM15	acute megakaryocytic leukemia								92	109					0	0	0.003610	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41751783	41751783	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:41751783C>T	uc003azw.2	+	19	2407	c.2191C>T	c.(2191-2193)CTT>TTT	p.L731F	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	747					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						GCGGCGGGTCCTTCTGGTGAT	0.602													10	9					0	0	0.008291	0	0
MEI1	150365	broad.mit.edu	37	22	42166941	42166941	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:42166941C>T	uc003baz.1	+	20	2545	c.2520C>T	c.(2518-2520)ATC>ATT	p.I840I	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Silent_p.I226I|MEI1_uc003bbc.1_Silent_p.I208I|MEI1_uc010gym.1_Silent_p.I208I|MEI1_uc003bbd.1_Silent_p.I83I	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	840							binding			central_nervous_system(1)|skin(1)	2						TCAGAAGCATCCCCAGCATCC	0.532													60	66					0	0	0.003610	0	0
RRP7A	27341	broad.mit.edu	37	22	42912127	42912127	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:42912127G>A	uc003bcq.2	-	3	248	c.232C>T	c.(232-234)CTC>TTC	p.L78F	SERHL_uc011apm.1_Intron|RRP7A_uc003bcp.2_Missense_Mutation_p.L101F	NM_015703	NP_056518	Q9Y3A4	RRP7A_HUMAN	ribosomal RNA processing 7 homolog A	78	RRM.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2						GTGGACAGGAGGCGGGACAGG	0.622													15	30					0	0	0.004007	0	0
PNPLA5	150379	broad.mit.edu	37	22	44277535	44277535	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:44277535C>T	uc003beg.2	-	8	1199	c.1102G>A	c.(1102-1104)GAT>AAT	p.D368N	PNPLA5_uc011aqc.1_Missense_Mutation_p.D228N|PNPLA5_uc003beh.2_Missense_Mutation_p.D254N	NM_138814	NP_620169	Q7Z6Z6	PLPL5_HUMAN	patatin-like phospholipase domain containing 5	368					lipid catabolic process		hydrolase activity				0		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				GCCGGCACATCGGGCAGCCAC	0.657													8	10					0	0	0.006214	0	0
UPK3A	7380	broad.mit.edu	37	22	45683288	45683288	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:45683288C>T	uc003bfy.2	+	3	450	c.444C>T	c.(442-444)TTC>TTT	p.F148F	UPK3A_uc010gzy.2_Intron	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	148	Lumenal (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		ATCCCAACTTCCAGGGCCTCT	0.607													5	5					0	0	0.001984	0	0
CHL1	10752	broad.mit.edu	37	3	391158	391158	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:391158G>A	uc003bou.2	+	9	1188	c.917G>A	c.(916-918)GGA>GAA	p.G306E	CHL1_uc003bot.2_Missense_Mutation_p.G322E|CHL1_uc003bow.1_Missense_Mutation_p.G306E|CHL1_uc011asi.1_Missense_Mutation_p.G322E	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	306	Ig-like C2-type 3.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CAGGACAAAGGAAATTATCGC	0.413													40	59					0	0	0.002522	0	0
ITPR1	3708	broad.mit.edu	37	3	4856858	4856858	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:4856858A>G	uc003bqa.2	+	56	8027	c.7679A>G	c.(7678-7680)AAG>AGG	p.K2560R	ITPR1_uc010hca.1_Missense_Mutation_p.K2545R|ITPR1_uc011asu.1_Missense_Mutation_p.K571R|ITPR1_uc003bqc.2_Missense_Mutation_p.K1530R|ITPR1_uc010hcc.1_Missense_Mutation_p.K328R|ITPR1_uc011asv.1_Missense_Mutation_p.K284R	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2608	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGGAGTGAGAAGCAGAAGAAG	0.478													17	28					0	0	0.004007	0	0
CPNE9	151835	broad.mit.edu	37	3	9754705	9754705	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:9754705C>T	uc003bsd.2	+	9	763	c.592C>T	c.(592-594)CCT>TCT	p.P198S		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	198	C2 2.									ovary(2)	2	Medulloblastoma(99;0.227)					CACGCTGAATCCTGTGTGGCA	0.532													18	24					0	0	0.007413	0	0
IL17RE	132014	broad.mit.edu	37	3	9948474	9948474	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:9948474C>T	uc003btu.2	+	6	568	c.451C>T	c.(451-453)CGC>TGC	p.R151C	CIDEC_uc003bto.2_Intron|IL17RE_uc003btv.2_Missense_Mutation_p.R151C|IL17RE_uc011atn.1_RNA|IL17RE_uc003btw.2_Missense_Mutation_p.R151C|IL17RE_uc003btx.2_Missense_Mutation_p.R35C|IL17RE_uc010hcq.2_Missense_Mutation_p.R151C|IL17RE_uc003bty.2_RNA	NM_153483	NP_705616	Q8NFR9	I17RE_HUMAN	interleukin 17 receptor E isoform 1	151	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane	receptor activity			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(96;5.34e-64)		CAAGGGACTTCGCTCTAAAAG	0.532													45	76					0	0	0.003214	0	0
C3orf10	55845	broad.mit.edu	37	3	10157502	10157502	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:10157502C>T	uc003bvb.2	+	1	170	c.117C>T	c.(115-117)TTC>TTT	p.F39F		NM_018462	NP_060932	Q8WUW1	BRK1_HUMAN	chromosome 3 open reading frame 10	39						cytoplasm|cytoskeleton					0						TCAACTCGTTCGGTCAGCGGG	0.612													23	19					0	0	0.003330	0	0
ATP2B2	491	broad.mit.edu	37	3	10391874	10391874	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:10391874C>T	uc003bvt.2	-	16	2765	c.2326G>A	c.(2326-2328)GAG>AAG	p.E776K	ATP2B2_uc003bvv.2_Missense_Mutation_p.E731K|ATP2B2_uc003bvw.2_Missense_Mutation_p.E731K|ATP2B2_uc010hdo.2_Missense_Mutation_p.E481K	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	776	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TCAATTCGCTCCTGCTCAATC	0.483													13	17					0	0	0.003163	0	0
SLC6A1	6529	broad.mit.edu	37	3	11067521	11067521	+	Silent	SNP	C	T	T	rs35450949	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:11067521C>T	uc010hdq.2	+	9	1323	c.912C>T	c.(910-912)ATC>ATT	p.I304I		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	304	Helical; Name=6; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GGTCCCTGATCGCTCTCGGGA	0.532													38	53					0	0	0.006999	0	0
SYN2	6854	broad.mit.edu	37	3	12183413	12183413	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:12183413T>A	uc003bwm.2	+	7	608	c.444T>A	c.(442-444)TTT>TTA	p.F148L	SYN2_uc003bwl.1_Missense_Mutation_p.F148L	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	148					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGGCAGAATTTTCAGAGCTCA	0.468													205	240					0	0	0.003610	0	0
TIMP4	7079	broad.mit.edu	37	3	12195141	12195141	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:12195141C>T	uc003bwo.2	-	5	856	c.549G>A	c.(547-549)TTG>TTA	p.L183L	SYN2_uc003bwl.1_Intron|SYN2_uc003bwm.2_Intron|SYN2_uc003bwn.2_Intron	NM_003256	NP_003247	Q99727	TIMP4_HUMAN	tissue inhibitor of metalloproteinase 4	183							metal ion binding|metalloendopeptidase inhibitor activity				0						GCTTTCGTTCCAACAGCCAGT	0.537													189	197					0	0	0.003610	0	0
NUP210	23225	broad.mit.edu	37	3	13363284	13363284	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:13363284T>G	uc003bxv.1	-	36	5050	c.4967A>C	c.(4966-4968)AAG>ACG	p.K1656T		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1656	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GCTCAGGTGCTTCCGCTGCTT	0.592													97	94					0	0	0.003610	0	0
FGD5	152273	broad.mit.edu	37	3	14939498	14939498	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:14939498G>A	uc003bzc.2	+	6	3072	c.2962G>A	c.(2962-2964)GAT>AAT	p.D988N	FGD5_uc011avk.1_Missense_Mutation_p.D988N|FGD5_uc003bzd.2_Missense_Mutation_p.D66N	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	988	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GCAGGGGTTTGATCACCACGC	0.587													27	27					0	0	0.005443	0	0
FGD5	152273	broad.mit.edu	37	3	14949198	14949198	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:14949198G>A	uc003bzc.2	+	10	3426	c.3316G>A	c.(3316-3318)GAT>AAT	p.D1106N	FGD5_uc011avk.1_Missense_Mutation_p.D1106N|FGD5_uc003bzd.2_Missense_Mutation_p.D184N	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	1106					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GGGCCAAGGGGATCTCCTCCA	0.647													14	26					0	0	0.002450	0	0
RFTN1	23180	broad.mit.edu	37	3	16411598	16411598	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:16411598G>C	uc003cay.2	-	6	1297	c.1015C>G	c.(1015-1017)CTT>GTT	p.L339V	RFTN1_uc010hes.2_Missense_Mutation_p.L303V	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	339						plasma membrane				ovary(3)|central_nervous_system(1)	4						ACTATTCCAAGGTAGAAGACT	0.493													3	76					0	0	0.009096	0	0
RFTN1	23180	broad.mit.edu	37	3	16450977	16450977	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:16450977C>T	uc003cay.2	-	4	628	c.346G>A	c.(346-348)GAT>AAT	p.D116N	RFTN1_uc010hes.2_Missense_Mutation_p.D80N	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	116						plasma membrane				ovary(3)|central_nervous_system(1)	4						TTGTGAAGATCAGTTTTCTGA	0.323													17	26					0	0	0.006122	0	0
PLCL2	23228	broad.mit.edu	37	3	17053137	17053137	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:17053137C>T	uc011awc.1	+	5	2380	c.2275C>T	c.(2275-2277)CCC>TCC	p.P759S	PLCL2_uc011awd.1_Missense_Mutation_p.P641S	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	767	C2.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GCAGAACTTTCCCAAGCCCAA	0.468													14	7					0	0	0.004990	0	0
PLCL2	23228	broad.mit.edu	37	3	17056385	17056385	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:17056385C>T	uc011awc.1	+	6	3081	c.2976C>T	c.(2974-2976)ATC>ATT	p.I992I	PLCL2_uc011awd.1_Silent_p.I874I	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	1000					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TGAAGAAGATCGTAACAACTT	0.483													46	60					0	0	0.002852	0	0
SATB1	6304	broad.mit.edu	37	3	18390985	18390985	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:18390985C>T	uc003cbh.2	-	11	3704	c.1969G>A	c.(1969-1971)GGA>AGA	p.G657R	SATB1_uc003cbi.2_Missense_Mutation_p.G689R|SATB1_uc003cbj.2_Missense_Mutation_p.G657R	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	657	Homeobox.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						TGGAGGATTCCCAAGGCTTCC	0.562													52	44					0	0	0.003610	0	0
SATB1	6304	broad.mit.edu	37	3	18427891	18427891	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:18427891C>T	uc003cbh.2	-	8	3154	c.1419G>A	c.(1417-1419)CAG>CAA	p.Q473Q	SATB1_uc003cbi.2_Silent_p.Q473Q|SATB1_uc003cbj.2_Silent_p.Q473Q	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	473					cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						GAGACCGCACCTGGGGAGGAC	0.478													43	64					0	0	0.003610	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751195	26751195	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:26751195C>T	uc003cdp.2	+	2	621	c.32C>T	c.(31-33)TCC>TTC	p.S11F	LRRC3B_uc003cdq.2_Missense_Mutation_p.S11F	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	11						integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						TTAACCCGTTCCCTCTCCATG	0.478													61	73					0	0	0.003610	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751401	26751401	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:26751401C>T	uc003cdp.2	+	2	827	c.238C>T	c.(238-240)CCC>TCC	p.P80S	LRRC3B_uc003cdq.2_Missense_Mutation_p.P80S	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	80	LRR 1.					integral to membrane		p.P80P(1)		pancreas(2)|ovary(1)|skin(1)	4						CACATCTATTCCCAATGAAAT	0.403													17	27					0	0	0.004007	0	0
DCLK3	85443	broad.mit.edu	37	3	36759603	36759603	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:36759603G>A	uc003cgi.2	-	4	2142	c.1651C>T	c.(1651-1653)CCC>TCC	p.P551S		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	551	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CGGAATGGGGGAAAGCCACAC	0.557													68	103					0	0	0.003610	0	0
DCLK3	85443	broad.mit.edu	37	3	36778708	36778708	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:36778708T>A	uc003cgi.2	-	2	1934	c.1443A>T	c.(1441-1443)GAA>GAT	p.E481D		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	481	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CCAAAAGGTTTTCCGGCTTGA	0.448													22	16					0	0	0.004656	0	0
DCLK3	85443	broad.mit.edu	37	3	36778957	36778957	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:36778957C>T	uc003cgi.2	-	2	1685	c.1194G>A	c.(1192-1194)ATG>ATA	p.M398I		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	398	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CACTGTCCACCATGTCCTCCT	0.507													18	26					0	0	0.006122	0	0
TRANK1	9881	broad.mit.edu	37	3	36872803	36872803	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:36872803C>T	uc003cgj.2	-	12	6791	c.6489G>A	c.(6487-6489)GGG>GGA	p.G2163G		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2713					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTTTGAAGTTCCCAGCCCTGG	0.582													11	11					0	0	0.000978	0	0
PLCD1	5333	broad.mit.edu	37	3	38049305	38049305	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:38049305G>A	uc003chn.2	-	15	2354	c.2230C>T	c.(2230-2232)CCA>TCA	p.P744S	PLCD1_uc003chm.2_Missense_Mutation_p.P765S	NM_006225	NP_006216	P51178	PLCD1_HUMAN	phospholipase C, delta 1 isoform 2	744					intracellular signal transduction|lipid catabolic process|phospholipid metabolic process	cytoplasm	calcium ion binding|GTPase activating protein binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		GTGGCTGATGGATGCTGGTCC	0.612													7	10					0	0	0.006214	0	0
PLCD1	5333	broad.mit.edu	37	3	38051222	38051222	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:38051222G>A	uc003chn.2	-	9	1492	c.1368C>T	c.(1366-1368)GCC>GCT	p.A456A	PLCD1_uc003chm.2_Silent_p.A477A	NM_006225	NP_006216	P51178	PLCD1_HUMAN	phospholipase C, delta 1 isoform 2	456					intracellular signal transduction|lipid catabolic process|phospholipid metabolic process	cytoplasm	calcium ion binding|GTPase activating protein binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		ACACCACAGTGGCCTCAGGGC	0.637													16	14					0	0	0.007413	0	0
SCN5A	6331	broad.mit.edu	37	3	38592955	38592955	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:38592955C>T	uc003cio.2	-	28	5102	c.4908G>A	c.(4906-4908)CTG>CTA	p.L1636L	SCN5A_uc003cin.2_Silent_p.L1635L|SCN5A_uc003cil.3_Silent_p.L1636L|SCN5A_uc010hhi.2_Silent_p.L1618L|SCN5A_uc010hhk.2_Silent_p.L1603L|SCN5A_uc011ayr.1_Silent_p.L1582L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1636	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CCCCTCGGATCAGTCTGAGGA	0.597													40	44					0	0	0.007835	0	0
SCN5A	6331	broad.mit.edu	37	3	38674559	38674559	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:38674559C>T	uc003cio.2	-	2	434	c.240G>A	c.(238-240)CTG>CTA	p.L80L	SCN5A_uc003cin.2_Silent_p.L80L|SCN5A_uc003cil.3_Silent_p.L80L|SCN5A_uc010hhi.2_Silent_p.L80L|SCN5A_uc010hhk.2_Silent_p.L80L|SCN5A_uc011ayr.1_Silent_p.L80L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	80					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CCAGGTCCTCCAGGGGCTCTC	0.612													14	21					0	0	0.006122	0	0
SCN11A	11280	broad.mit.edu	37	3	38921480	38921480	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:38921480G>A	uc011ays.1	-	19	3553	c.3354C>T	c.(3352-3354)TTC>TTT	p.F1118F	SCN11A_uc010hhn.1_Silent_p.F196F	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1118	III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGGCACTGGTGAAATACTTTC	0.393													9	14					0	0	0.000978	0	0
XIRP1	165904	broad.mit.edu	37	3	39226238	39226238	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:39226238C>T	uc003cjk.1	-	2	4920	c.4699G>A	c.(4699-4701)GAG>AAG	p.E1567K	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.E250K	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1567							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GCACTGGCCTCAGGCTGGAGG	0.577													36	57					0	0	0.003271	0	0
CCR8	1237	broad.mit.edu	37	3	39374688	39374688	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:39374688C>T	uc010hhr.2	+	2	1004	c.866C>T	c.(865-867)TCC>TTC	p.S289F	CCR8_uc003cjm.2_Missense_Mutation_p.S206F	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	289	Helical; Name=7; (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		GAAATCATTTCCTTTACTCAC	0.423													28	21					0	0	0.008361	0	0
RPSA	3921	broad.mit.edu	37	3	39449165	39449166	+	Silent	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:39449165_39449166CC>TT	uc003cjp.2	+	2	106_107	c.21_22CC>TT	c.(19-24)GTCCTG>GTTTTG	p.7_8VL>VL	RPSA_uc003cjq.2_Silent_p.7_8VL>VL|RPSA_uc003cjr.2_Silent_p.7_8VL>VL|RPSA_uc003cjt.2_5'Flank|SNORA6_uc003cjs.1_5'Flank	NM_002295	NP_002286	P08865	RSSA_HUMAN	ribosomal protein SA	7_8					cell adhesion|endocrine pancreas development|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|ribosomal small subunit assembly|rRNA export from nucleus|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleus|plasma membrane	protein binding|receptor activity|ribosome binding|structural constituent of ribosome			lung(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0509)|Kidney(284;0.064)		cccttgatgtcctgcaaatgaa	0.342													15	24					0	0	0.004672	0	0
MYRIP	25924	broad.mit.edu	37	3	40231918	40231918	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:40231918C>T	uc003cka.2	+	10	1764	c.1629C>T	c.(1627-1629)TCC>TCT	p.S543S	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Silent_p.S543S|MYRIP_uc010hhw.2_Silent_p.S454S|MYRIP_uc011ayz.1_Silent_p.S356S|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	543	Myosin-binding.|Actin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		AACCATCTTCCCCCAGCGCCC	0.602													11	22					0	0	0.002450	0	0
ZNF197	10168	broad.mit.edu	37	3	44685209	44685209	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:44685209G>A	uc003cnm.2	+	6	2793	c.2587G>A	c.(2587-2589)GAA>AAA	p.E863K	ZNF197_uc003cnn.2_Intron|ZNF197_uc003cno.2_Intron|ZNF197_uc003cnp.2_Intron	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	863	C2H2-type 18.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		AAACCTGATTGAACATCAAAG	0.408													46	40					0	0	0.002852	0	0
ZNF502	91392	broad.mit.edu	37	3	44763128	44763129	+	Missense_Mutation	DNP	GA	CG	CG			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:44763128_44763129GA>CG	uc011baa.1	+	4	1074_1075	c.819_820GA>CG	c.(817-822)GGGAAG>GGCGAG	p.K274E	ZNF502_uc003cns.2_Missense_Mutation_p.K274E|ZNF502_uc011bab.1_Missense_Mutation_p.K274E|ZNF502_uc003cnt.2_Missense_Mutation_p.K274E	NM_001134440	NP_001127912	Q8TBZ5	ZN502_HUMAN	zinc finger protein 502	274	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00855)|KIRC - Kidney renal clear cell carcinoma(197;0.0471)|Kidney(197;0.0589)		ATAGGTGTGGGAAGGCATTCAA	0.406													87	110					0	0	0.004672	0	0
KIF15	56992	broad.mit.edu	37	3	44856487	44856487	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:44856487C>T	uc003cnx.3	+	20	2617	c.2468C>T	c.(2467-2469)TCA>TTA	p.S823L	KIF15_uc010hiq.2_Missense_Mutation_p.S726L|KIF15_uc010hir.2_5'UTR	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	823	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		GAATATAGTTCATTCAAAACG	0.353													38	39					0	0	0.006999	0	0
CLEC3B	7123	broad.mit.edu	37	3	45077305	45077305	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:45077305T>A	uc003cok.3	+	3	594	c.498T>A	c.(496-498)GAT>GAA	p.D166E	CLEC3B_uc003col.2_Missense_Mutation_p.D124E	NM_003278	NP_003269	P05452	TETN_HUMAN	C-type lectin domain family 3, member B	166	C-type lectin.				skeletal system development	extracellular space	protein binding|sugar binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00863)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CGCAACCCGATGGCGGCAAGA	0.657													19	28					0	0	0.001882	0	0
NBEAL2	23218	broad.mit.edu	37	3	47049159	47049159	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:47049159G>A	uc003cqp.2	+	48	7658	c.7479G>A	c.(7477-7479)AAG>AAA	p.K2493K	NBEAL2_uc010hjm.1_Silent_p.K1870K|NBEAL2_uc010hjn.1_Silent_p.K859K|NBEAL2_uc010hjo.1_Silent_p.K53K	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	2493	WD 2.						binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		CCCGTGGCAAGCTGTTGAGCC	0.627													7	7					0	0	0.001984	0	0
KLHL18	23276	broad.mit.edu	37	3	47371567	47371567	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:47371567C>T	uc003crd.2	+	4	654	c.528C>T	c.(526-528)TTC>TTT	p.F176F	KLHL18_uc003crc.2_Silent_p.F176F|KLHL18_uc011bav.1_Silent_p.F64F|KLHL18_uc010hjq.1_Silent_p.F27F	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	176	BACK.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		CAGAAGAGTTCCTGGCCCTGC	0.542													19	21					0	0	0.001882	0	0
KLHL18	23276	broad.mit.edu	37	3	47385374	47385374	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:47385374C>T	uc003crd.2	+	10	1794	c.1668C>T	c.(1666-1668)CCC>CCT	p.P556P	KLHL18_uc011bav.1_Silent_p.P444P	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	556	Kelch 6.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		TCATGGCCCCCATGGCGTGCC	0.597													54	56					0	0	0.003610	0	0
COL7A1	1294	broad.mit.edu	37	3	48607608	48607608	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:48607608C>T	uc003ctz.2	-	98	7445	c.7444G>A	c.(7444-7446)GAA>AAA	p.E2482K		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2482	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CGGCCATCTTCACCCTGGATG	0.582													19	25					0	0	0.010504	0	0
CELSR3	1951	broad.mit.edu	37	3	48668507	48668507	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:48668507G>A	uc003cuf.1	-	45	11268	c.11268C>T	c.(11266-11268)ATC>ATT	p.I3756I	SLC26A6_uc003cug.2_Silent_p.I330I|SLC26A6_uc003cuh.2_Silent_p.I351I|SLC26A6_uc010hke.2_Silent_p.I202I|SLC26A6_uc003cuk.2_Silent_p.I244I|SLC26A6_uc003cui.2_Silent_p.I351I|SLC26A6_uc003cuj.2_Silent_p.I351I|SLC26A6_uc011bbp.1_Silent_p.I315I	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CAACCACAGCGATGGTGAAGG	0.612													36	48					0	0	0.005524	0	0
CELSR3	1951	broad.mit.edu	37	3	48691118	48691118	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:48691118C>T	uc003cul.2	-	9	5663	c.5382G>A	c.(5380-5382)CGG>CGA	p.R1794R	CELSR3_uc003cuf.1_Silent_p.R1864R|CELSR3_uc010hkg.2_5'Flank	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1794	Extracellular (Potential).|Laminin G-like 2.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TTGCCCGTGTCCGAAATGCCA	0.607													31	26					0	0	0.009535	0	0
LAMB2	3913	broad.mit.edu	37	3	49162711	49162711	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:49162711G>A	uc003cwe.2	-	19	2994	c.2695C>T	c.(2695-2697)CAC>TAC	p.H899Y	LAMB2_uc003cwf.1_Missense_Mutation_p.H899Y	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	899	Laminin EGF-like 8.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CCCCCTGTGTGATCACGGCAG	0.592													60	87					0	0	0.003610	0	0
BSN	8927	broad.mit.edu	37	3	49662657	49662657	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:49662657C>T	uc003cxe.3	+	2	588	c.474C>T	c.(472-474)GTC>GTT	p.V158V		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	158					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCTACTCCGTCCCTCAGATCG	0.637													23	22					0	0	0.003954	0	0
DOCK3	1795	broad.mit.edu	37	3	51251646	51251646	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:51251646G>A	uc011bds.1	+	14	1243	c.1220G>A	c.(1219-1221)AGA>AAA	p.R407K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	407						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GCAATTACAAGAAAATTGGGA	0.453													13	11					0	0	0.001368	0	0
DOCK3	1795	broad.mit.edu	37	3	51266125	51266125	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:51266125C>T	uc011bds.1	+	18	1704	c.1681C>T	c.(1681-1683)CTG>TTG	p.L561L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	561	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TAACCATGCTCTGTACCTGGG	0.468													19	18					0	0	0.008871	0	0
GLYCTK	132158	broad.mit.edu	37	3	52326770	52326770	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:52326770C>T	uc003ddo.2	+	5	1296	c.1200C>T	c.(1198-1200)GGC>GGT	p.G400G	GLYCTK_uc003ddq.2_3'UTR|GLYCTK_uc003ddm.2_Intron|GLYCTK_uc003ddn.2_Intron|GLYCTK_uc003ddp.1_Intron|GLYCTK_uc003ddr.2_Silent_p.G64G	NM_145262	NP_660305	Q8IVS8	GLCTK_HUMAN	glycerate kinase isoform 1	400					protein phosphorylation	Golgi apparatus|mitochondrion	ATP binding|glycerate kinase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;3.56e-05)|Kidney(197;0.00171)|KIRC - Kidney renal clear cell carcinoma(197;0.00194)|OV - Ovarian serous cystadenocarcinoma(275;0.235)		GGGGAAGGGGCCCAGTCTGCC	0.647													25	22					0	0	0.004656	0	0
SEMA3G	56920	broad.mit.edu	37	3	52475367	52475367	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:52475367C>T	uc003dea.1	-	7	726	c.726G>A	c.(724-726)AAG>AAA	p.K242K		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	242	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		AGAAGTACACCTTGTCATTGT	0.627													7	17					0	0	0.001984	0	0
STAB1	23166	broad.mit.edu	37	3	52537381	52537381	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:52537381C>T	uc003dej.2	+	8	790	c.716C>T	c.(715-717)TCA>TTA	p.S239L	STAB1_uc003dei.1_Missense_Mutation_p.S239L	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	239	EGF-like 4.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TGCTGGCCATCACCCTGCTCA	0.652													12	10					0	0	0.001855	0	0
STAB1	23166	broad.mit.edu	37	3	52551991	52551991	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:52551991G>A	uc003dej.2	+	45	4807	c.4733G>A	c.(4732-4734)GGC>GAC	p.G1578D	STAB1_uc003dek.1_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1578	Extracellular (Potential).|EGF-like 13.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GTGGGGGACGGCCTCACCTGC	0.612													20	30					0	0	0.003330	0	0
ITIH1	3697	broad.mit.edu	37	3	52816039	52816039	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:52816039G>A	uc003dfs.2	+	7	795	c.771G>A	c.(769-771)AAG>AAA	p.K257K	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_5'Flank|ITIH1_uc010hmo.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	257					hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GGCACTTCAAGGTGACCTACG	0.587													22	34					0	0	0.010504	0	0
ITIH1	3697	broad.mit.edu	37	3	52825909	52825909	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:52825909C>T	uc003dfs.2	+	22	2742	c.2718C>T	c.(2716-2718)ATC>ATT	p.I906I	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_3'UTR|ITIH1_uc010hmo.1_Silent_p.I460I|ITIH1_uc003dfu.2_Silent_p.I272I|ITIH3_uc003dfv.2_5'Flank|ITIH3_uc011bek.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	906	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		CTGATTATATCGTCCCCGACA	0.597													9	21					0	0	0.006214	0	0
PRKCD	5580	broad.mit.edu	37	3	53217545	53217545	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:53217545C>T	uc003dgl.2	+	9	1088	c.735C>T	c.(733-735)GAC>GAT	p.D245D	PRKCD_uc003dgm.2_Silent_p.D245D|PRKCD_uc010hmt.1_Silent_p.D17D	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	245	Phorbol-ester/DAG-type 2.				activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		CCTTCTGTGACCACTGCGGCA	0.607													25	35					0	0	0.007291	0	0
CACNA1D	776	broad.mit.edu	37	3	53783436	53783436	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:53783436C>T	uc003dgv.3	+	27	3619	c.3456C>T	c.(3454-3456)ATC>ATT	p.I1152I	CACNA1D_uc003dgu.3_Silent_p.I1172I|CACNA1D_uc003dgy.3_Silent_p.I1152I|CACNA1D_uc003dgw.3_Silent_p.I819I|CACNA1D_uc003dgx.1_Silent_p.I300I	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1152	Dihydropyridine binding (By similarity).|Cytoplasmic (Potential).|III.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GCTTTGTCATCGTTACATTTC	0.418													20	29					0	0	0.010504	0	0
CACNA1D	776	broad.mit.edu	37	3	53844187	53844187	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:53844187C>T	uc003dgv.3	+	47	6217	c.6054C>T	c.(6052-6054)TCC>TCT	p.S2018S	CACNA1D_uc003dgu.3_Silent_p.S2038S|CACNA1D_uc003dgy.3_Silent_p.S1994S|CACNA1D_uc003dgw.3_Silent_p.S1685S|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	2018	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GCCTGCCGTCCCTGCACCGCA	0.627													12	13					0	0	0.001368	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54661835	54661835	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:54661835A>C	uc003dhf.2	+	10	1033	c.985A>C	c.(985-987)AAA>CAA	p.K329Q	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.K235Q|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.K63Q	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	329	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GCATCTGGACAAACTTTTCGC	0.413													6	6					0	0	0.001984	0	0
IL17RD	54756	broad.mit.edu	37	3	57138405	57138405	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:57138405G>A	uc003dil.2	-	8	867	c.778C>T	c.(778-780)CTT>TTT	p.L260F	IL17RD_uc003dik.2_Missense_Mutation_p.L236F|IL17RD_uc010hna.2_Missense_Mutation_p.L116F|IL17RD_uc011bex.1_Missense_Mutation_p.L116F	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	260	Extracellular (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		ACATTTTGAAGGAGGCAGCTG	0.413													7	10					0	0	0.004482	0	0
HESX1	8820	broad.mit.edu	37	3	57232439	57232439	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:57232439G>A	uc003din.3	-	3	773	c.439C>T	c.(439-441)CTA>TTA	p.L147L		NM_003865	NP_003856	Q9UBX0	HESX1_HUMAN	HESX homeobox 1	147	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0109)|Kidney(284;0.0126)		TCTTCCTCTAGATTCAATTTT	0.274													24	22					0	0	0.006320	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64599180	64599180	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:64599180C>A	uc003dmg.2	-	22	3227	c.3195G>T	c.(3193-3195)TTG>TTT	p.L1065F	ADAMTS9_uc011bfo.1_Missense_Mutation_p.L1037F|ADAMTS9_uc003dmh.1_Missense_Mutation_p.L894F|ADAMTS9_uc011bfp.1_5'UTR	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1065	TSP type-1 5.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CACAGGTGACCAAGCACTGTA	0.453													9	250					0.00621372	0.00978889	0.006214	1	0
MITF	4286	broad.mit.edu	37	3	69990452	69990452	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:69990452G>C	uc003dnz.2	+	5	848	c.732G>C	c.(730-732)TTG>TTC	p.L244F	MITF_uc011bgb.1_Missense_Mutation_p.L192F|MITF_uc003doa.2_Missense_Mutation_p.L243F|MITF_uc003dob.2_Missense_Mutation_p.L228F|MITF_uc003dod.2_Missense_Mutation_p.L219F|MITF_uc003doe.2_Missense_Mutation_p.L137F|MITF_uc003dof.2_Missense_Mutation_p.L137F	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	244	Transactivation.				melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		TCTTGGGCTTGATGGATCCTG	0.348			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						23	33					0	0	0.003954	0	0
VGLL3	389136	broad.mit.edu	37	3	87017746	87017746	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:87017746C>T	uc003dqn.2	-	3	1295	c.931G>A	c.(931-933)GAT>AAT	p.D311N		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	311					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		TTACCTGTATCGAATCCCACG	0.393													30	30					0	0	0.002836	0	0
EPHA6	285220	broad.mit.edu	37	3	96706553	96706553	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:96706553G>A	uc010how.1	+	3	873	c.830G>A	c.(829-831)GGA>GAA	p.G277E	EPHA6_uc003drp.1_Missense_Mutation_p.G277E	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	182	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GAAAGGAAAGGATTTTATCTG	0.458													93	143					0	0	0.003610	0	0
EPHA6	285220	broad.mit.edu	37	3	97356795	97356795	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:97356795G>A	uc010how.1	+	14	2696	c.2653G>A	c.(2653-2655)GAT>AAT	p.D885N	EPHA6_uc011bgp.1_3'UTR|EPHA6_uc003drs.3_Missense_Mutation_p.D277N|EPHA6_uc003drr.3_Missense_Mutation_p.D277N|EPHA6_uc003drt.2_Missense_Mutation_p.D277N|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	790	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GTATCTTTCTGATATGGGTTA	0.453													73	84					0	0	0.003610	0	0
TFG	10342	broad.mit.edu	37	3	100438853	100438853	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:100438853C>T	uc003due.2	+	3	668	c.219C>T	c.(217-219)GAC>GAT	p.D73D	TFG_uc003duf.2_Silent_p.D73D|TFG_uc003dug.2_Silent_p.D73D|TFG_uc003duh.2_Silent_p.D73D|TFG_uc003dui.2_Silent_p.D73D	NM_006070	NP_006061	Q92734	TFG_HUMAN	TRK-fused	73					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm	signal transducer activity		TFG/ALK(7)	haematopoietic_and_lymphoid_tissue(7)|lung(2)|large_intestine(1)|prostate(1)	11						ATAGTTCTGACCTTTCCTTTG	0.234			T	NTRK1|ALK	papillary thyroid|ALCL|NSCLC								27	49					0	0	0.008361	0	0
ZBTB11	27107	broad.mit.edu	37	3	101384430	101384430	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:101384430C>T	uc003dve.3	-	4	1231	c.1001G>A	c.(1000-1002)CGA>CAA	p.R334Q		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	334					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATTCTGTACTCGTAAGTCCTG	0.428													32	41					0	0	0.009535	0	0
FAM55C	91775	broad.mit.edu	37	3	101540558	101540558	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:101540558C>T	uc003dvn.2	+	8	2077	c.1440C>T	c.(1438-1440)GTC>GTT	p.V480V	FAM55C_uc010hpn.2_Silent_p.V480V	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	480						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						CCGTGGTGGTCATCCGGACGG	0.572													40	56					0	0	0.008740	0	0
MYH15	22989	broad.mit.edu	37	3	108159925	108159925	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:108159925G>A	uc003dxa.1	-	24	2955	c.2898C>T	c.(2896-2898)ATC>ATT	p.I966I		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	966	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CCAGGTCATCGATTTCTTTCT	0.458													70	79					0	0	0.003610	0	0
MYH15	22989	broad.mit.edu	37	3	108182015	108182015	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:108182015T>G	uc003dxa.1	-	17	1924	c.1867A>C	c.(1867-1869)AAG>CAG	p.K623Q		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	623	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTGGAAGACTTCTGAAATACA	0.408													64	92					0	0	0.003610	0	0
TRAT1	50852	broad.mit.edu	37	3	108572665	108572665	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:108572665C>T	uc003dxi.1	+	6	646	c.502C>T	c.(502-504)CAT>TAT	p.H168Y	TRAT1_uc010hpx.1_Missense_Mutation_p.H131Y	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	168	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						GGAAAACATTCATGATGATCC	0.438													40	45					0	0	0.006230	0	0
GUCA1C	9626	broad.mit.edu	37	3	108626922	108626922	+	Missense_Mutation	SNP	C	T	T	rs146701862		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:108626922C>T	uc003dxj.2	-	4	645	c.577G>A	c.(577-579)GAC>AAC	p.D193N	GUCA1C_uc003dxk.2_3'UTR	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	193					signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						TTGGAGGAGTCTGTCTCCATG	0.458													19	23					0	0	0.007413	0	0
LSAMP	4045	broad.mit.edu	37	3	115805321	115805321	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:115805321G>A	uc003ebt.2	-	2	738	c.238C>T	c.(238-240)CTG>TTG	p.L80L	LSAMP_uc011bis.1_Silent_p.L80L	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	80	Ig-like C2-type 1.				cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		CGTGGGTCCAGAGACCACTTG	0.502													33	39					0	0	0.004289	0	0
STXBP5L	9515	broad.mit.edu	37	3	120973774	120973774	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:120973774T>G	uc003eec.3	+	16	1614	c.1474T>G	c.(1474-1476)TCA>GCA	p.S492A	STXBP5L_uc011bji.1_Missense_Mutation_p.S492A	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	492					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GCTAAAAACTTCAAAAGTGTT	0.338													27	12					0	0	0.008361	0	0
FBXO40	51725	broad.mit.edu	37	3	121341303	121341303	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:121341303G>A	uc003eeg.2	+	3	1237	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	343					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		GGAGGCTCAGGAAGTTAAGAC	0.473													28	28					0	0	0.004656	0	0
HCLS1	3059	broad.mit.edu	37	3	121350950	121350950	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:121350950C>T	uc003eeh.3	-	13	1447	c.1322G>A	c.(1321-1323)GGA>GAA	p.G441E	HCLS1_uc011bjj.1_Missense_Mutation_p.G404E	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	441	SH3.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		CAACCTACCTCCTTGGTAATC	0.428													30	66					0	0	0.003755	0	0
HCLS1	3059	broad.mit.edu	37	3	121353216	121353216	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:121353216C>T	uc003eeh.3	-	10	866	c.741G>A	c.(739-741)GAG>GAA	p.E247E	HCLS1_uc011bjj.1_Silent_p.E210E|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	247					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		TCCTCTTCTCCTCAGCCATGG	0.557													37	38					0	0	0.008740	0	0
CD86	942	broad.mit.edu	37	3	121774344	121774344	+	Missense_Mutation	SNP	C	T	T	rs141814734	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:121774344C>T	uc003eet.2	+	1	124	c.8C>T	c.(7-9)CCC>CTC	p.P3L	CD86_uc011bjo.1_5'UTR|CD86_uc011bjp.1_Missense_Mutation_p.P3L	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	3					interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	AAAATGGATCCCCAGTGGTGA	0.458													30	52					0	0	0.002445	0	0
CASR	846	broad.mit.edu	37	3	122002959	122002959	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:122002959G>A	uc003eev.3	+	7	2530	c.2158G>A	c.(2158-2160)GGG>AGG	p.G720R	CASR_uc003eew.3_Missense_Mutation_p.G730R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	720	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CAAGTGGTGGGGGCTCAACCT	0.567													16	11					0	0	0.004007	0	0
CASR	846	broad.mit.edu	37	3	122002961	122002961	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:122002961G>A	uc003eev.3	+	7	2532	c.2160G>A	c.(2158-2160)GGG>GGA	p.G720G	CASR_uc003eew.3_Silent_p.G730G	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	720	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	AGTGGTGGGGGCTCAACCTGC	0.572													16	11					0	0	0.004007	0	0
MYLK	4638	broad.mit.edu	37	3	123512533	123512533	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:123512533G>A	uc003ego.2	-	4	438	c.156C>T	c.(154-156)TTC>TTT	p.F52F	MYLK_uc011bjw.1_Silent_p.F52F|MYLK_uc003egp.2_Silent_p.F52F|MYLK_uc003egq.2_Silent_p.F52F|MYLK_uc003egr.2_Silent_p.F52F|MYLK_uc003egs.2_5'UTR|MYLK_uc010hrs.1_Silent_p.F52F|MYLK_uc003egu.1_Silent_p.F62F	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	52	Ig-like C2-type 1.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CCCGCCCTTCGAACTTGGCGG	0.602													22	22					0	0	0.003954	0	0
KALRN	8997	broad.mit.edu	37	3	124215215	124215215	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:124215215C>T	uc003ehg.2	+	33	5011	c.4884C>T	c.(4882-4884)ATC>ATT	p.I1628I	KALRN_uc010hrv.1_Silent_p.I1619I|KALRN_uc003ehf.1_Silent_p.I1628I|KALRN_uc011bjy.1_Silent_p.I1619I	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1628					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CAGACACCATCTCCATTGCTT	0.542													38	41					0	0	0.002522	0	0
ITGB5	3693	broad.mit.edu	37	3	124538681	124538681	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:124538681C>A	uc003eho.2	-	7	1240	c.943G>T	c.(943-945)GAC>TAC	p.D315Y	ITGB5_uc010hrx.2_5'Flank	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	315	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		GATGGATAGTCCTAGGGCCAA	0.468													37	65					2.40579e-17	3.82516e-17	0.006230	1	0
HEG1	57493	broad.mit.edu	37	3	124731581	124731581	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:124731581G>A	uc003ehs.3	-	6	2910	c.2842C>T	c.(2842-2844)CCT>TCT	p.P948S	HEG1_uc011bke.1_Missense_Mutation_p.P1048S	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	948	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						TGGGGAGAAGGAGATGTTCCG	0.512													18	8					0	0	0.004990	0	0
CCDC37	348807	broad.mit.edu	37	3	126153205	126153205	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:126153205G>A	uc003eiu.1	+	15	1708	c.1609G>A	c.(1609-1611)GAG>AAG	p.E537K	CCDC37_uc010hsg.1_Missense_Mutation_p.E538K	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	537	Potential.									ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		GAGGGCAAAGGAGAAGGAGCG	0.622													13	20					0	0	0.001855	0	0
CHST13	166012	broad.mit.edu	37	3	126261167	126261167	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:126261167C>T	uc003eja.2	+	3	772	c.772C>T	c.(772-774)CGC>TGC	p.R258C		NM_152889	NP_690849	Q8NET6	CHSTD_HUMAN	carbohydrate sulfotransferase 13	258	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.151)		CCACCCGTGTCGCCTCCGCTA	0.692													4	3					0	0	0.009096	0	0
TXNRD3IT1	645840	broad.mit.edu	37	3	126291117	126291117	+	Silent	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:126291117A>T	uc003ejc.2	-	3	749	c.270T>A	c.(268-270)CTT>CTA	p.L90L		NM_001039783	NP_001034872	Q6F5E7	TR3N_HUMAN	thioredoxin reductase 3 intronic transcript 1	90											0						gctctccagaaagacattttg	0.249													13	18					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	3	126916203	126916203	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:126916203C>T	uc003eji.1	+	2	915	c.675C>T	c.(673-675)TCC>TCT	p.S225S						RecName: Full=Putative uncharacterized protein C3orf56;																		CGGGCTGCTCCCGCTCCTCCT	0.627													6	6					0	0	0.001984	0	0
RHO	6010	broad.mit.edu	37	3	129251558	129251558	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:129251558C>T	uc003emt.2	+	4	974	c.879C>T	c.(877-879)TTC>TTT	p.F293F		NM_000539	NP_000530	P08100	OPSD_HUMAN	rhodopsin	293	Helical; Name=7; (Potential).				protein-chromophore linkage|rhodopsin mediated signaling pathway	Golgi apparatus|integral to plasma membrane|photoreceptor inner segment membrane|photoreceptor outer segment membrane	G-protein coupled receptor activity|metal ion binding|photoreceptor activity|protein binding				0		all_neural(597;0.0227)|Myeloproliferative disorder(1037;0.0255)|Prostate(884;0.183)		GBM - Glioblastoma multiforme(114;2.58e-05)|Lung(219;0.0234)	Halothane(DB01159)	TCCCAGCGTTCTTTGCCAAGA	0.582													30	33					0	0	0.002445	0	0
TMCC1	23023	broad.mit.edu	37	3	129389208	129389208	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:129389208G>A	uc003emz.3	-	5	1977	c.1476C>T	c.(1474-1476)TCC>TCT	p.S492S	TMCC1_uc003emy.3_Silent_p.S168S|TMCC1_uc011blc.1_Silent_p.S313S|TMCC1_uc010htg.2_Silent_p.S378S	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	492	Potential.					integral to membrane				skin(1)	1						GCATTATTAAGGAATAGTCCC	0.433													50	69					0	0	0.003610	0	0
COL6A6	131873	broad.mit.edu	37	3	130282324	130282324	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:130282324G>A	uc010htl.2	+	2	508	c.477G>A	c.(475-477)GTG>GTA	p.V159V		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	159	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AAGACGGAGTGAAAATCATCT	0.493													17	33					0	0	0.006122	0	0
COL6A6	131873	broad.mit.edu	37	3	130283963	130283963	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:130283963G>A	uc010htl.2	+	3	818	c.787G>A	c.(787-789)GAA>AAA	p.E263K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	263	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TGACATAAAGGAAAATTGCAT	0.393													68	99					0	0	0.003610	0	0
PCCB	5096	broad.mit.edu	37	3	136035827	136035827	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:136035827C>T	uc003eqy.1	+	10	1062	c.1011C>T	c.(1009-1011)GCC>GCT	p.A337A	PCCB_uc003eqz.1_Silent_p.A337A|PCCB_uc011bmc.1_Silent_p.A357A|PCCB_uc011bmd.1_Silent_p.A254A	NM_000532	NP_000523	P05166	PCCB_HUMAN	propionyl Coenzyme A carboxylase, beta	337	Acyl-CoA binding (Potential).|Carboxyltransferase.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|propionyl-CoA carboxylase activity				0					Biotin(DB00121)|L-Valine(DB00161)	CCAATTATGCCAAGAACATCA	0.398													56	70					0	0	0.003610	0	0
CLDN18	51208	broad.mit.edu	37	3	137717827	137717827	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:137717827C>T	uc003ero.1	+	1	170	c.117C>T	c.(115-117)CCC>CCT	p.P39P		NM_001002026	NP_001002026	P56856	CLD18_HUMAN	claudin 18 isoform 2	39	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity			upper_aerodigestive_tract(1)|ovary(1)	2						ACAACAACCCCGTAACAGCTG	0.592													30	67					0	0	0.002445	0	0
TXNDC6	347736	broad.mit.edu	37	3	138023805	138023805	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:138023805C>T	uc003esg.2	-	9	729	c.701G>A	c.(700-702)AGG>AAG	p.R234K	TXNDC6_uc003esd.1_Intron|TXNDC6_uc010huf.1_Missense_Mutation_p.R149K|TXNDC6_uc003ese.1_Missense_Mutation_p.R173K	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	234	NDK.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						GCCCTCAGTCCTGGTGAGGAT	0.597													200	263					0	0	0.003610	0	0
ESYT3	83850	broad.mit.edu	37	3	138170893	138170893	+	Missense_Mutation	SNP	C	T	T	rs143292701	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:138170893C>T	uc003esk.2	+	2	557	c.331C>T	c.(331-333)CAC>TAC	p.H111Y	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	111						integral to membrane|plasma membrane					0						TTCCTAGATCCACTTCCCGGA	0.672													85	97					0	0	0.003610	0	0
C3orf72	401089	broad.mit.edu	37	3	138669293	138669293	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:138669293G>A	uc003esx.1	+	3	538	c.407G>A	c.(406-408)CGA>CAA	p.R136Q	C3orf72_uc011bmr.1_3'UTR	NM_001040061	NP_001035150	Q6ZUU3	CC072_HUMAN	chromosome 3 open reading frame 72	136											0						GCGGGACCCCGAAACACCCGG	0.657													11	18					0	0	0.000978	0	0
PRR23C	389152	broad.mit.edu	37	3	138762818	138762818	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:138762818G>A	uc011bmt.1	-	1	917	c.645C>T	c.(643-645)TTC>TTT	p.F215F		NM_001134657	NP_001128129	Q6ZRP0	PR23C_HUMAN	proline rich 23C	215	Pro-rich.									skin(1)	1						ATTCCAGGTCGAAGATGGGGC	0.647													6	6					0	0	0.001984	0	0
GRK7	131890	broad.mit.edu	37	3	141535598	141535598	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:141535598G>A	uc011bnd.1	+	4	1452	c.1368G>A	c.(1366-1368)ACG>ACA	p.T456T		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	456	AGC-kinase C-terminal.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						TCTTTAAAACGATCAACTTTC	0.423													44	65					0	0	0.003610	0	0
MED12L	116931	broad.mit.edu	37	3	150876497	150876497	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:150876497G>A	uc003eyp.2	+	6	786	c.748G>A	c.(748-750)GAA>AAA	p.E250K	MED12L_uc011bnz.1_Missense_Mutation_p.E250K|MED12L_uc003eym.1_Missense_Mutation_p.E250K|MED12L_uc003eyn.2_Missense_Mutation_p.E250K|MED12L_uc003eyo.2_Missense_Mutation_p.E250K	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	250					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGAAAAACACGAATATTTGAC	0.308													12	22					0	0	0.001368	0	0
MED12L	116931	broad.mit.edu	37	3	150877703	150877703	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:150877703G>A	uc003eyp.2	+	7	960	c.922G>A	c.(922-924)GAT>AAT	p.D308N	MED12L_uc011bnz.1_Intron|MED12L_uc003eyn.2_Missense_Mutation_p.D308N|MED12L_uc003eyo.2_Missense_Mutation_p.D308N	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	308					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCTGCTGAGCGATAGCCCCAA	0.577													64	83					0	0	0.003610	0	0
IGSF10	285313	broad.mit.edu	37	3	151154763	151154763	+	Missense_Mutation	SNP	C	T	T	rs146905174		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:151154763C>T	uc011bod.1	-	6	7586	c.7586G>A	c.(7585-7587)CGA>CAA	p.R2529Q	IGSF10_uc011bob.1_Missense_Mutation_p.R556Q|IGSF10_uc011boc.1_Missense_Mutation_p.R508Q	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2529	Ig-like C2-type 12.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ATTTGTAATTCGGGGAGGGTA	0.478													45	49					0	0	0.003610	0	0
SUCNR1	56670	broad.mit.edu	37	3	151599324	151599324	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:151599324C>A	uc003ezf.1	+	3	1092	c.993C>A	c.(991-993)TTC>TTA	p.F331L		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	331	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	TACTTTCATTCAGAGAAAAGT	0.418													21	32					1.10513e-12	1.75145e-12	0.002299	1	0
SLC33A1	9197	broad.mit.edu	37	3	155560404	155560404	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:155560404G>A	uc003fan.3	-	2	1161	c.780C>T	c.(778-780)TTC>TTT	p.F260F	SLC33A1_uc003fao.1_Silent_p.F260F	NM_004733	NP_004724	O00400	ACATN_HUMAN	acetyl-coenzyme A transporter	260	Helical; (Potential).				cell death|transmembrane transport	endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane|membrane fraction	acetyl-CoA transporter activity			ovary(2)|large_intestine(1)|pancreas(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AGAAAAAAAGGAAATCTGAAA	0.184													8	17					0	0	0.004482	0	0
KCNAB1	7881	broad.mit.edu	37	3	156183475	156183475	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:156183475G>A	uc003far.2	+	7	635	c.571G>A	c.(571-573)GGA>AGA	p.G191R	KCNAB1_uc011bon.1_Missense_Mutation_p.E191K|KCNAB1_uc003fas.2_Missense_Mutation_p.G180R|KCNAB1_uc003fat.2_Missense_Mutation_p.G173R|KCNAB1_uc010hvt.1_Missense_Mutation_p.E173K|KCNAB1_uc011boo.1_Missense_Mutation_p.G67R	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related	191						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			TATTATTGAAGGTGGGTACTT	0.378													18	27					0	0	0.007413	0	0
SCHIP1	29970	broad.mit.edu	37	3	159609905	159609905	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:159609905C>T	uc003fcs.1	+	7	1404	c.1338C>T	c.(1336-1338)GTC>GTT	p.V446V	SCHIP1_uc003fcq.1_Silent_p.V522V|SCHIP1_uc003fcr.1_Silent_p.V435V|SCHIP1_uc003fct.1_Silent_p.V433V|SCHIP1_uc010hvz.1_Silent_p.V406V|SCHIP1_uc003fcu.1_Silent_p.V203V|SCHIP1_uc003fcv.1_Silent_p.V219V	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	446	Potential.					cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			AAGAGTTGGTCCAGCTGCTTC	0.448													28	31					0	0	0.008361	0	0
B3GALNT1	8706	broad.mit.edu	37	3	160804493	160804493	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:160804493G>A	uc003fdv.2	-	5	469	c.50C>T	c.(49-51)TCC>TTC	p.S17F	B3GALNT1_uc003fdw.2_Missense_Mutation_p.S17F|B3GALNT1_uc003fdx.2_Missense_Mutation_p.S17F|B3GALNT1_uc003fdy.2_Missense_Mutation_p.S17F|B3GALNT1_uc003fdz.2_Missense_Mutation_p.S17F|B3GALNT1_uc003fea.2_Missense_Mutation_p.S17F|B3GALNT1_uc011bpa.1_Missense_Mutation_p.S17F	NM_033169	NP_149359	O75752	B3GL1_HUMAN	UDP-Gal:betaGlcNAc beta	17	Cytoplasmic (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;4.41e-05)|Lung(72;4.61e-05)			CCATTTGAGGGATCTCAGTGA	0.527													15	16					0	0	0.002450	0	0
SI	6476	broad.mit.edu	37	3	164780273	164780273	+	Splice_Site	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:164780273T>C	uc003fei.2	-	9	970	c.908_splice	c.e9-1	p.E303_splice		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase						carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TAAAAATCTCTGCAAAATAAA	0.274										HNSCC(35;0.089)			14	27					0	0	0.003163	0	0
WDR49	151790	broad.mit.edu	37	3	167217983	167217983	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:167217983C>T	uc003fev.1	-	14	2239	c.1933G>A	c.(1933-1935)GAA>AAA	p.E645K	WDR49_uc003feu.1_Missense_Mutation_p.E470K|WDR49_uc011bpd.1_Missense_Mutation_p.E610K|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	645										large_intestine(1)|ovary(1)|skin(1)	3						GGACGCTCTTCCTCTGGTTCT	0.423													97	113					0	0	0.003610	0	0
MECOM	2122	broad.mit.edu	37	3	168819869	168819869	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:168819869C>T	uc003ffi.3	-	10	2455	c.2186G>A	c.(2185-2187)GGA>GAA	p.G729E	MECOM_uc010hwk.1_Missense_Mutation_p.G743E|MECOM_uc003ffj.3_Missense_Mutation_p.G794E|MECOM_uc011bpi.1_Missense_Mutation_p.G721E|MECOM_uc003ffn.3_Missense_Mutation_p.G729E|MECOM_uc003ffk.2_Missense_Mutation_p.G720E|MECOM_uc003ffl.2_Missense_Mutation_p.G880E|MECOM_uc011bpj.1_Missense_Mutation_p.G917E|MECOM_uc011bpk.1_Missense_Mutation_p.G719E|MECOM_uc010hwn.2_Missense_Mutation_p.G908E	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	729					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GCGCTCCTTTCCCTTCCGCAG	0.502													24	25					0	0	0.004656	0	0
MECOM	2122	broad.mit.edu	37	3	168833244	168833244	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:168833244C>T	uc003ffi.3	-	7	2121	c.1852G>A	c.(1852-1854)GAA>AAA	p.E618K	MECOM_uc010hwk.1_Missense_Mutation_p.E641K|MECOM_uc003ffj.3_Missense_Mutation_p.E683K|MECOM_uc011bpi.1_Missense_Mutation_p.E619K|MECOM_uc003ffn.3_Missense_Mutation_p.E618K|MECOM_uc003ffk.2_Missense_Mutation_p.E618K|MECOM_uc003ffl.2_Missense_Mutation_p.E778K|MECOM_uc011bpj.1_Missense_Mutation_p.E806K|MECOM_uc011bpk.1_Missense_Mutation_p.E608K|MECOM_uc010hwn.2_Missense_Mutation_p.E806K	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	618					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GGTCTTGATTCGACGTTGCTT	0.473													20	19					0	0	0.010504	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540261	169540261	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:169540261C>T	uc003fgb.2	+	1	552	c.552C>T	c.(550-552)CTC>CTT	p.L184L		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	184	LRR 7.										0						CCCAGGAGCTCTGTGTTCTCT	0.493													42	47					0	0	0.006999	0	0
SAMD7	344658	broad.mit.edu	37	3	169639115	169639116	+	Missense_Mutation	DNP	GG	AA	AA	rs138236130	by1000genomes	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:169639115_169639116GG>AA	uc003fgd.2	+	4	467_468	c.200_201GG>AA	c.(199-201)CGG>CAA	p.R67Q	SAMD7_uc003fge.2_Missense_Mutation_p.R67Q|SAMD7_uc011bpo.1_5'UTR	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	67								p.R67W(1)		skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			TTGTCCAGTCGGATCTACCCAG	0.426													24	25					0	0	0.004672	0	0
PHC3	80012	broad.mit.edu	37	3	169854299	169854299	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:169854299G>A	uc010hws.1	-	7	855	c.791C>T	c.(790-792)CCA>CTA	p.P264L	PHC3_uc003fgl.2_Missense_Mutation_p.P276L|PHC3_uc011bpq.1_Missense_Mutation_p.P223L|PHC3_uc011bpr.1_Missense_Mutation_p.P190L|PHC3_uc003fgm.2_Missense_Mutation_p.P276L	NM_024947	NP_079223	Q8NDX5	PHC3_HUMAN	polyhomeotic like 3	264	Ser-rich.				multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(22;2.67e-22)|all_epithelial(15;4.73e-27)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			ATTACTTTCTGGAGAAGGATC	0.433													28	25					0	0	0.005443	0	0
SLC7A14	57709	broad.mit.edu	37	3	170244485	170244485	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:170244485C>T	uc003fgz.2	-	2	557	c.241G>A	c.(241-243)GAA>AAA	p.E81K	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	81						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			CCTGCCATTTCCTTGGCCACC	0.532													21	42					0	0	0.002780	0	0
EIF5A2	56648	broad.mit.edu	37	3	170625451	170625451	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:170625451C>G	uc003fhd.2	-	2	275	c.145G>C	c.(145-147)GGA>CGA	p.G49R		NM_020390	NP_065123	Q9GZV4	IF5A2_HUMAN	eIF-5A2 protein	49					mRNA transport|peptidyl-lysine modification to hypusine|polyamine homeostasis|positive regulation of cell proliferation|positive regulation of translational elongation|positive regulation of translational termination|post-translational protein modification|protein transport|spermatogenesis|translational frameshifting|transmembrane transport	cytosol|endoplasmic reticulum membrane|nuclear pore	protein binding|ribosome binding|translation elongation factor activity				0	all_cancers(22;1.61e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;9.8e-16)|Lung(28;4.28e-15)			CCATGCTTTCCAGTTTTGGAA	0.478													72	77					0	0	0.003610	0	0
GHSR	2693	broad.mit.edu	37	3	172165940	172165940	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:172165940G>A	uc003fib.1	-	1	264	c.264C>T	c.(262-264)TCC>TCT	p.S88S	GHSR_uc011bpv.1_Silent_p.S88S	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	88	Helical; Name=2; (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			TGAGCAGATCGGAGAAGGCCA	0.617													19	28					0	0	0.001882	0	0
ZNF639	51193	broad.mit.edu	37	3	179051528	179051528	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:179051528C>T	uc003fjq.1	+	6	1119	c.776C>T	c.(775-777)CCC>CTC	p.P259L	ZNF639_uc003fjr.1_Missense_Mutation_p.P259L	NM_016331	NP_057415	Q9UID6	ZN639_HUMAN	zinc finger protein 639	259					initiation of viral infection|negative regulation by host of viral transcription|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of cell growth|positive regulation of transcription, DNA-dependent	nucleus	protein self-association|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0	all_cancers(143;7.9e-17)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			GAAGAGGATCCCTACATTTGT	0.383													34	40					0	0	0.002836	0	0
MFN1	55669	broad.mit.edu	37	3	179096428	179096428	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:179096428C>T	uc003fjs.2	+	14	1614	c.1488C>T	c.(1486-1488)ATC>ATT	p.I496I	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Silent_p.I524I|MFN1_uc010hxc.2_Intron	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	496	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			ATACACTGATCCCTTGCAAGA	0.328													17	14					0	0	0.008871	0	0
CCDC39	339829	broad.mit.edu	37	3	180349328	180349328	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:180349328C>T	uc010hxe.2	-	14	2042	c.1927G>A	c.(1927-1929)GAA>AAA	p.E643K	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	643					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			GTCAGAATTTCATATCTATTC	0.343													29	38					0	0	0.007291	0	0
LAMP3	27074	broad.mit.edu	37	3	182871954	182871954	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:182871954T>A	uc003flh.3	-	2	499	c.275A>T	c.(274-276)AAA>ATA	p.K92I		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	92	Lumenal (Potential).|Thr-rich.				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			TGCAGTGTTTTTTGTAGTCGC	0.483													36	48					0	0	0.004289	0	0
YEATS2	55689	broad.mit.edu	37	3	183435492	183435492	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:183435492C>T	uc003fly.2	+	3	349	c.154C>T	c.(154-156)CTT>TTT	p.L52F		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	52	Potential.				histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			ACAGTTTGCTCTTGAAATGAA	0.323													59	76					0	0	0.003610	0	0
HRG	3273	broad.mit.edu	37	3	186395524	186395524	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:186395524T>G	uc003fqq.2	+	7	1453	c.1430T>G	c.(1429-1431)TTT>TGT	p.F477C		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	477	His/Pro-rich (HRR).				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		GAGGCCAATTTTCCCAGCTTC	0.502													37	55					0	0	0.004289	0	0
TP63	8626	broad.mit.edu	37	3	189526072	189526072	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:189526072G>A	uc003fry.2	+	4	425	c.336G>A	c.(334-336)ACG>ACA	p.T112T	TP63_uc003frx.2_Silent_p.T112T|TP63_uc003frz.2_Silent_p.T112T|TP63_uc010hzc.1_Silent_p.T112T|TP63_uc003fsa.2_Silent_p.T18T|TP63_uc003fsb.2_Silent_p.T18T|TP63_uc003fsc.2_Silent_p.T18T|TP63_uc003fsd.2_Silent_p.T18T|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_5'UTR	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	112					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CACAGTACACGAACCTGGGGC	0.547									Hay-Wells_syndrome	HNSCC(45;0.13)			28	39					0	0	0.002836	0	0
TP63	8626	broad.mit.edu	37	3	189586378	189586378	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:189586378C>T	uc003fry.2	+	8	1091	c.1002C>T	c.(1000-1002)GTC>GTT	p.V334V	TP63_uc003frx.2_Silent_p.V334V|TP63_uc003frz.2_Silent_p.V334V|TP63_uc010hzc.1_Silent_p.V334V|TP63_uc003fsa.2_Silent_p.V240V|TP63_uc003fsb.2_Silent_p.V240V|TP63_uc003fsc.2_Silent_p.V240V|TP63_uc003fsd.2_Silent_p.V240V|TP63_uc010hzd.1_Silent_p.V155V|TP63_uc003fse.1_Silent_p.V215V	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	334					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GTGGGCAAGTCCTGGGCCGAC	0.488									Hay-Wells_syndrome	HNSCC(45;0.13)			15	25					0	0	0.003163	0	0
TP63	8626	broad.mit.edu	37	3	189612184	189612184	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:189612184C>G	uc003fry.2	+	14	2025	c.1936C>G	c.(1936-1938)CTC>GTC	p.L646V	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Missense_Mutation_p.L552V|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Missense_Mutation_p.L467V	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	646	Transactivation inhibition.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GCGATTCACCCTCCGCCAGAC	0.562									Hay-Wells_syndrome	HNSCC(45;0.13)			41	49					0	0	0.009718	0	0
TP63	8626	broad.mit.edu	37	3	189612186	189612186	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:189612186C>T	uc003fry.2	+	14	2027	c.1938C>T	c.(1936-1938)CTC>CTT	p.L646L	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Silent_p.L552L|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Silent_p.L467L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	646	Transactivation inhibition.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GATTCACCCTCCGCCAGACCA	0.562									Hay-Wells_syndrome	HNSCC(45;0.13)			41	50					0	0	0.007835	0	0
PYDC2	152138	broad.mit.edu	37	3	191179053	191179053	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:191179053C>T	uc011bso.1	+	1	102	c.102C>T	c.(100-102)TCC>TCT	p.S34S		NM_001083308	NP_001076777	Q56P42	PYDC2_HUMAN	pyrin domain containing 2	34	DAPIN.					cytoplasm|nucleus					0						GAACAATCTCCCTGGGAAAGG	0.532													39	69					0	0	0.006999	0	0
CPN2	1370	broad.mit.edu	37	3	194063279	194063279	+	Silent	SNP	C	T	T	rs141207947		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:194063279C>T	uc003fts.2	-	2	243	c.153G>A	c.(151-153)ACG>ACA	p.T51T		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	51					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		TGATGTTTTTCGTATATGGCG	0.537													31	58					0	0	0.002445	0	0
PIGZ	80235	broad.mit.edu	37	3	196675001	196675001	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr3:196675001C>T	uc003fxh.2	-	3	914	c.767G>A	c.(766-768)CGG>CAG	p.R256Q		NM_025163	NP_079439	Q86VD9	PIGZ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	256					GPI anchor biosynthetic process	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			ovary(3)	3	all_cancers(143;1.05e-08)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.29e-24)|all cancers(36;2.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00603)		CAGGGCCTCCCGGGTCAGAGA	0.622													12	7					0	0	0.001855	0	0
ZNF721	170960	broad.mit.edu	37	4	436612	436612	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:436612C>T	uc003gag.2	-	3	2335	c.1644G>A	c.(1642-1644)AGG>AGA	p.R548R	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Silent_p.R580R|ZNF721_uc010ibe.2_Silent_p.R536R	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	548						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TATGAATTCTCCTATGTACAT	0.408													58	74					0	0	0.003610	0	0
PIGG	54872	broad.mit.edu	37	4	515512	515512	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:515512C>T	uc003gak.3	+	8	1532	c.1396C>T	c.(1396-1398)CCA>TCA	p.P466S	PIGG_uc003gaj.3_Missense_Mutation_p.P458S|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Missense_Mutation_p.P333S|PIGG_uc003gal.3_Missense_Mutation_p.P377S|PIGG_uc003gai.2_RNA|PIGG_uc011buw.1_Silent_p.S328S|PIGG_uc003gam.2_3'UTR|PIGG_uc003gan.2_Missense_Mutation_p.P377S	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	466					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						GCTGGAAGTCCCACTGTCATC	0.537													18	20					0	0	0.010504	0	0
EVC	2121	broad.mit.edu	37	4	5811294	5811294	+	Missense_Mutation	SNP	C	T	T	rs148823298		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:5811294C>T	uc003gil.1	+	19	2922	c.2738C>T	c.(2737-2739)CCC>CTC	p.P913L	EVC_uc003gim.1_RNA|CRMP1_uc003gin.1_Intron	NM_153717	NP_714928	P57679	EVC_HUMAN	Ellis van Creveld syndrome protein	913					muscle organ development	integral to membrane		p.P913L(1)		ovary(1)|skin(1)	2		Myeloproliferative disorder(84;0.117)				GCCCGAGTGCCCCTTGCTGAA	0.428													29	19					0	0	0.006230	0	0
MAN2B2	23324	broad.mit.edu	37	4	6590804	6590804	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:6590804C>T	uc003gjf.1	+	5	633	c.597C>T	c.(595-597)TCC>TCT	p.S199S	MAN2B2_uc003gje.1_Silent_p.S199S|MAN2B2_uc011bwf.1_Silent_p.S199S	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	199					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						GGTCCCCATCCCTCTCAGAGC	0.612													24	26					0	0	0.009535	0	0
ABLIM2	84448	broad.mit.edu	37	4	7994616	7994616	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:7994616C>T	uc003gko.2	-	16	1698	c.1555G>A	c.(1555-1557)GGA>AGA	p.G519R	ABLIM2_uc003gkk.2_Intron|ABLIM2_uc003gkl.2_Missense_Mutation_p.G247R|ABLIM2_uc003gkj.3_Missense_Mutation_p.G553R|ABLIM2_uc003gkm.3_Missense_Mutation_p.G467R|ABLIM2_uc003gkp.2_Intron|ABLIM2_uc003gkq.2_Intron|ABLIM2_uc003gkr.2_Intron	NM_001130084	NP_001123556	Q6H8Q1	ABLM2_HUMAN	actin binding LIM protein family, member 2	519					axon guidance|cytoskeleton organization	actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus	actin binding|zinc ion binding			pancreas(3)	3						CCATTCTTTCCATGTCCTGGG	0.562													7	18					0	0	0.003080	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229215	8229215	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:8229215C>T	uc003gkv.3	+	12	1895	c.1794C>T	c.(1792-1794)TTC>TTT	p.F598F	SH3TC1_uc003gkw.3_Silent_p.F522F|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	598							binding			large_intestine(2)|pancreas(1)	3						GGGACCTGTTCCTAGTGGTGG	0.642													79	4					0	0	0.003610	0	0
HTRA3	94031	broad.mit.edu	37	4	8294051	8294051	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:8294051G>A	uc003gla.2	+	5	1111	c.907G>A	c.(907-909)GGG>AGG	p.G303R	HTRA3_uc003gkz.2_Missense_Mutation_p.G303R	NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	303	Serine protease.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						CTTGCAGTACGGGAACTCCGG	0.572													15	31					0	0	0.002450	0	0
GPR78	27201	broad.mit.edu	37	4	8588889	8588889	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:8588889C>T	uc003glk.2	+	3	1310	c.891C>T	c.(889-891)CTC>CTT	p.L297L	CPZ_uc003gll.2_Intron	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	297	Helical; Name=7; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						ACTCTCTGCTCCGCCGGCCGT	0.662													14	22					0	0	0.002450	0	0
BOD1L	259282	broad.mit.edu	37	4	13601364	13601364	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:13601364G>A	uc003gmz.1	-	10	7277	c.7160C>T	c.(7159-7161)CCT>CTT	p.P2387L	BOD1L_uc010idr.1_Missense_Mutation_p.P1724L	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2387							DNA binding			ovary(5)|breast(1)	6						GACTGGCCCAGGACACCGACA	0.602													45	50					0	0	0.009718	0	0
CPEB2	132864	broad.mit.edu	37	4	15063816	15063816	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:15063816C>T	uc003gni.1	+	10	1561	c.1474C>T	c.(1474-1476)CAG>TAG	p.Q492*	CPEB2_uc003gnj.1_Nonsense_Mutation_p.Q462*|CPEB2_uc003gnk.1_Nonsense_Mutation_p.Q500*|CPEB2_uc003gnl.1_Nonsense_Mutation_p.Q473*|CPEB2_uc003gnm.1_Nonsense_Mutation_p.Q470*|CPEB2_uc003gnn.1_Nonsense_Mutation_p.Q465*	NM_182485	NP_872291	Q7Z5Q1	CPEB2_HUMAN	cytoplasmic polyadenylation element binding	492	RRM 2.				regulation of translation	cytoplasm	nucleotide binding|RNA binding			skin(1)	1						TTTCTCCAATCAGCAGAGCTA	0.438													51	67					0	0	0.003610	0	0
CC2D2A	57545	broad.mit.edu	37	4	15518298	15518298	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:15518298C>T	uc010idv.2	+	12	1313	c.1068C>T	c.(1066-1068)CCC>CCT	p.P356P	CC2D2A_uc003gnx.2_Silent_p.P307P|CC2D2A_uc003gnv.2_Silent_p.P356P|uc003gny.1_5'Flank	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	356					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						TGCCAAACCCCATCAAGCCAT	0.468													9	22					0	0	0.004482	0	0
SLIT2	9353	broad.mit.edu	37	4	20619147	20619147	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:20619147G>A	uc003gpr.1	+	36	4426	c.4222G>A	c.(4222-4224)GAA>AAA	p.E1408K	SLIT2_uc003gps.1_Missense_Mutation_p.E1400K	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1408					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CCTCTGTGATGAAGAGGAGGA	0.552													15	13					0	0	0.004007	0	0
PACRGL	133015	broad.mit.edu	37	4	20715058	20715058	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:20715058C>T	uc010iek.2	+	7	896	c.505C>T	c.(505-507)CAT>TAT	p.H169Y	PACRGL_uc003gpu.2_RNA|PACRGL_uc010iei.1_Missense_Mutation_p.H217Y|PACRGL_uc003gpz.2_Missense_Mutation_p.H169Y|PACRGL_uc011bxm.1_Missense_Mutation_p.H116Y|PACRGL_uc003gqa.2_Missense_Mutation_p.H71Y|PACRGL_uc003gpx.3_RNA|PACRGL_uc003gpv.2_Missense_Mutation_p.H169Y|PACRGL_uc003gpw.2_RNA|PACRGL_uc010iej.1_RNA|PACRGL_uc011bxn.1_Missense_Mutation_p.H71Y|PACRGL_uc003gpy.2_Missense_Mutation_p.H116Y	NM_145048	NP_659485	Q8N7B6	PACRL_HUMAN	PARK2 co-regulated-like isoform 1	169							binding				0						CTTACAGGTCCATTCGGATGA	0.318													31	21					0	0	0.002836	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23830060	23830060	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:23830060C>T	uc003gqs.2	-	5	840	c.720G>A	c.(718-720)AAG>AAA	p.K240K	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	240					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TGTGGGACTTCTTTTTGGAGG	0.498													54	58					0	0	0.003610	0	0
DHX15	1665	broad.mit.edu	37	4	24543617	24543617	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:24543617G>A	uc003gqx.2	-	8	1532	c.1364C>T	c.(1363-1365)TCC>TTC	p.S455F	DHX15_uc003gqw.2_5'Flank	NM_001358	NP_001349	O43143	DHX15_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 15	455	Helicase C-terminal.				mRNA processing	U12-type spliceosomal complex	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(1)	1		Breast(46;0.0503)				CACCAAAAGGGACTCAACTCT	0.418													26	22					0	0	0.007291	0	0
LGI2	55203	broad.mit.edu	37	4	25028503	25028503	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:25028503G>A	uc003grf.2	-	3	427	c.328C>T	c.(328-330)CAT>TAT	p.H110Y		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	110	LRR 2.					extracellular region					0		Breast(46;0.173)				TATTCAAGATGAAAAAGTCCA	0.388													47	37					0	0	0.003610	0	0
C4orf34	201895	broad.mit.edu	37	4	39606742	39606742	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:39606742G>A	uc003guo.2	-	2	182	c.24C>T	c.(22-24)CCC>CCT	p.P8P		NM_174921	NP_777581	Q96QK8	CD034_HUMAN	hypothetical protein LOC201895	8						integral to membrane	protein binding				0						CACATTCACAGGGATCAAATC	0.388													26	33					0	0	0.002096	0	0
LIMCH1	22998	broad.mit.edu	37	4	41648538	41648538	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:41648538G>A	uc003gvu.3	+	12	1347	c.1293G>A	c.(1291-1293)AAG>AAA	p.K431K	LIMCH1_uc003gvv.3_Silent_p.K431K|LIMCH1_uc003gvw.3_Silent_p.K431K|LIMCH1_uc003gvx.3_Silent_p.K419K|LIMCH1_uc003gwe.3_Silent_p.K431K|LIMCH1_uc003gvy.3_Silent_p.K260K|LIMCH1_uc003gwa.3_Silent_p.K272K|LIMCH1_uc003gvz.3_Silent_p.K816K|LIMCH1_uc011byu.1_Silent_p.K265K|LIMCH1_uc003gwc.3_Silent_p.K277K|LIMCH1_uc003gwd.3_Silent_p.K265K|LIMCH1_uc011byv.1_Silent_p.K182K	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	431	Potential.				actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AAGCATATAAGAACGCTCGGT	0.468													51	45					0	0	0.003610	0	0
GRXCR1	389207	broad.mit.edu	37	4	42964963	42964963	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:42964963C>T	uc003gwt.2	+	2	439	c.439C>T	c.(439-441)CGT>TGT	p.R147C		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	147	Glutaredoxin.				cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						CACCTGCCTTCGTGTGGTCCG	0.388													54	48					0	0	0.003610	0	0
KCTD8	386617	broad.mit.edu	37	4	44450352	44450352	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:44450352G>A	uc003gwu.2	-	1	473	c.189C>T	c.(187-189)CTC>CTT	p.L63L		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	63	BTB.					cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						CCGGGACGCTGAGCAGCGTCG	0.502										HNSCC(17;0.042)			5	9					0	0	0.001984	0	0
CORIN	10699	broad.mit.edu	37	4	47644058	47644058	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:47644058A>T	uc003gxm.2	-	16	2170	c.2077T>A	c.(2077-2079)TCT>ACT	p.S693T	CORIN_uc011bzf.1_Missense_Mutation_p.S554T|CORIN_uc011bzg.1_Missense_Mutation_p.S626T	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	693	Extracellular (Potential).|SRCR.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						ACATTTATAGAGAGGGTCACT	0.443													19	35					0	0	0.010504	0	0
CORIN	10699	broad.mit.edu	37	4	47765593	47765593	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:47765593C>T	uc003gxm.2	-	4	513	c.420G>A	c.(418-420)ATG>ATA	p.M140I	CORIN_uc011bzf.1_Missense_Mutation_p.M1I|CORIN_uc011bzg.1_Missense_Mutation_p.M73I|CORIN_uc011bzh.1_Missense_Mutation_p.M140I|CORIN_uc011bzi.1_Missense_Mutation_p.M140I|CORIN_uc003gxn.3_Missense_Mutation_p.M140I	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	140	Extracellular (Potential).|FZ 1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						GGGTGATGTTCATACAGGCAC	0.418													54	47					0	0	0.003610	0	0
CWH43	80157	broad.mit.edu	37	4	49040068	49040068	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:49040068G>A	uc003gyv.2	+	13	1856	c.1674G>A	c.(1672-1674)AGG>AGA	p.R558R	CWH43_uc011bzl.1_Silent_p.R531R	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	558					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						ACCTCGACAGGAAACTGCAGG	0.353													105	127					0	0	0.003610	0	0
ARL9	132946	broad.mit.edu	37	4	57389937	57389937	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:57389937G>A	uc003hby.1	+	4	715	c.267G>A	c.(265-267)AAG>AAA	p.K89K		NM_206919	NP_996802	Q6T311	ARL9_HUMAN	ADP-ribosylation factor-like 9	153							GTP binding				0	Glioma(25;0.08)|all_neural(26;0.101)					ATGACAGGAAGATGTTCTTGT	0.448													30	18					0	0	0.009535	0	0
CENPC1	1060	broad.mit.edu	37	4	68379911	68379911	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:68379911T>A	uc003hdd.1	-	8	1508	c.1325A>T	c.(1324-1326)GAA>GTA	p.E442V	CENPC1_uc010ihj.1_RNA|CENPC1_uc010ihk.1_RNA|CENPC1_uc010ihm.1_Missense_Mutation_p.E442V	NM_001812	NP_001803	Q03188	CENPC_HUMAN	centromere protein C 1	442					mitotic prometaphase	condensed chromosome kinetochore|condensed nuclear chromosome, centromeric region|cytosol	DNA binding			urinary_tract(1)|lung(1)	2						ATGTATGTTTTCATCTTTAGA	0.348													18	16					0	0	0.007413	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68784714	68784714	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:68784714C>T	uc003hdr.1	-	8	1059	c.938G>A	c.(937-939)GGA>GAA	p.G313E	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.G310E	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	313	Peptidase S1.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TGCTCCAAATCCTGTGATGTG	0.458													52	58					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	4	69337307	69337307	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:69337307C>T	uc003hdz.3	+	5	520	c.456C>T	c.(454-456)CCC>CCT	p.P152P		NM_014058	NP_054777			transmembrane protease, serine 11E																		CTGTAGGACCCCCTAAAGTAG	0.338													48	72					0	0	0.003610	0	0
UGT2B7	7364	broad.mit.edu	37	4	69964335	69964335	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:69964335C>T	uc003heg.3	+	2	845	c.799C>T	c.(799-801)CCA>TCA	p.P267S	UGT2B7_uc010ihq.2_Missense_Mutation_p.P267S	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	267					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TTTTCAGTTTCCATATCCACT	0.393													56	132					0	0	0.003610	0	0
UGT2B11	10720	broad.mit.edu	37	4	70070152	70070152	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:70070152G>A	uc003heh.2	-	5	1315	c.1306C>T	c.(1306-1308)CCT>TCT	p.P436S	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	436					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						ACTCACAAAGGATCATTAATT	0.403													42	64					0	0	0.003610	0	0
UGT2B4	7363	broad.mit.edu	37	4	70350973	70350973	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:70350973C>T	uc003hek.3	-	5	1310	c.1263G>A	c.(1261-1263)TCG>TCA	p.S421S	UGT2B4_uc011cap.1_Silent_p.S285S|UGT2B4_uc003hel.3_Intron	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	421					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AGTCTGTACTCGACATTGTGT	0.418													60	80					0	0	0.003610	0	0
SULT1E1	6783	broad.mit.edu	37	4	70713508	70713508	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:70713508G>A	uc003heo.2	-	6	612	c.499C>T	c.(499-501)CCT>TCT	p.P167S		NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	167					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						GAACCATAAGGAACTAAAATT	0.338													29	35					0	0	0.008361	0	0
SMR3A	26952	broad.mit.edu	37	4	71232442	71232442	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:71232442G>A	uc003hfg.1	+	3	217	c.136G>A	c.(136-138)GGA>AGA	p.G46R	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	46	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				TTTTCCTTTTGGAACAGGATT	0.547													24	57					0	0	0.003330	0	0
MUC7	4589	broad.mit.edu	37	4	71347538	71347538	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:71347538T>C	uc011cat.1	+	4	1365	c.1077T>C	c.(1075-1077)TTT>TTC	p.F359F	MUC7_uc011cau.1_Silent_p.F359F|MUC7_uc003hfj.2_Silent_p.F359F|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	359						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			TTTCTCGATTTCTTTTATATA	0.363													21	39					0	0	0.002299	0	0
PPEF2	5470	broad.mit.edu	37	4	76782056	76782056	+	Missense_Mutation	SNP	C	T	T	rs138073376	by1000genomes	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:76782056C>T	uc003hix.2	-	17	2383	c.2026G>A	c.(2026-2028)GAG>AAG	p.E676K	PPEF2_uc003hiy.2_RNA	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	676	EF-hand 2.|1 (Potential).				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TGCCTGAACTCGTCCAGTGAG	0.428													30	43					0	0	0.003755	0	0
SDAD1	55153	broad.mit.edu	37	4	76891466	76891466	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:76891466G>A	uc003hje.3	-	10	998	c.879C>T	c.(877-879)CCC>CCT	p.P293P	SDAD1_uc003hjf.3_Silent_p.P196P|SDAD1_uc011cbr.1_Silent_p.P256P	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	293	Potential.				protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ACGTACCTTGGGGATCATGAA	0.373													39	25					0	0	0.002522	0	0
ART3	419	broad.mit.edu	37	4	77003456	77003456	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:77003456T>A	uc003hjo.2	+	3	668	c.549T>A	c.(547-549)TTT>TTA	p.F183L	ART3_uc003hji.2_Missense_Mutation_p.F183L|ART3_uc003hjj.2_Missense_Mutation_p.F183L|ART3_uc003hjk.2_Missense_Mutation_p.F183L|ART3_uc010ija.1_Missense_Mutation_p.F183L|ART3_uc003hjn.2_Missense_Mutation_p.F183L|ART3_uc003hjp.2_Intron|ART3_uc010ijb.2_Intron|ART3_uc003hjq.2_Intron|ART3_uc003hjr.2_Missense_Mutation_p.F153L|ART3_uc010ijc.2_Missense_Mutation_p.F153L|ART3_uc010ijd.2_Missense_Mutation_p.F153L	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	183					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TTGGCCATTTTACCTTGGCAT	0.433													16	21					0	0	0.003163	0	0
FRAS1	80144	broad.mit.edu	37	4	79204065	79204065	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:79204065C>T	uc003hlb.2	+	12	1639	c.1199C>T	c.(1198-1200)CCA>CTA	p.P400L	FRAS1_uc003hkw.2_Missense_Mutation_p.P400L|FRAS1_uc003hky.1_Missense_Mutation_p.P104L|FRAS1_uc003hkz.2_Missense_Mutation_p.P104L	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	400	VWFC 6.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CCACCATGTCCAGTGGGCACA	0.552													18	25					0	0	0.006122	0	0
FRAS1	80144	broad.mit.edu	37	4	79295332	79295332	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:79295332C>T	uc003hlb.2	+	25	3518	c.3078C>T	c.(3076-3078)CTC>CTT	p.L1026L	FRAS1_uc003hkw.2_Silent_p.L1026L	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1025	FU 13.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GGCCATTTCTCCTCTTGGAAG	0.493													55	53					0	0	0.003610	0	0
FRAS1	80144	broad.mit.edu	37	4	79369265	79369266	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:79369265_79369266CC>TT	uc003hlb.2	+	44	6509_6510	c.6069_6070CC>TT	c.(6067-6072)GTCCAG>GTTTAG	p.Q2024*		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2023	CSPG 8.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GAGTTTTAGTCCAGGGCTCAAC	0.505													11	11					0	0	0.004672	0	0
GK2	2712	broad.mit.edu	37	4	80329056	80329056	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:80329056C>T	uc003hlu.2	-	1	317	c.299G>A	c.(298-300)TGG>TAG	p.W100*		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	100					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						TAACTTGTCCCAGATTACAGT	0.408													46	56					0	0	0.003610	0	0
FGF5	2250	broad.mit.edu	37	4	81207563	81207563	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:81207563G>A	uc003hmd.2	+	3	781	c.544G>A	c.(544-546)GAA>AAA	p.E182K	FGF5_uc003hme.2_3'UTR	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	182					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						ACATAGAACTGAAAAAACAGG	0.458													60	80					0	0	0.003610	0	0
SEC31A	22872	broad.mit.edu	37	4	83772734	83772734	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:83772734G>A	uc003hnf.2	-	19	2342	c.2178C>T	c.(2176-2178)ATC>ATT	p.I726I	SEC31A_uc003hne.2_Silent_p.I459I|SEC31A_uc011ccl.1_Silent_p.I687I|SEC31A_uc003hnl.2_Silent_p.I687I|SEC31A_uc003hng.2_Silent_p.I726I|SEC31A_uc003hnh.2_Silent_p.I726I|SEC31A_uc003hni.2_Silent_p.I726I|SEC31A_uc003hnj.2_Silent_p.I687I|SEC31A_uc011ccm.1_Silent_p.I721I|SEC31A_uc011ccn.1_Silent_p.I726I|SEC31A_uc003hnk.2_Silent_p.I687I|SEC31A_uc003hnm.2_Silent_p.I726I|SEC31A_uc003hnn.1_Silent_p.I726I	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	726					COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				CTTTTCGCAGGATGACAACTT	0.413													16	24					0	0	0.004990	0	0
WDFY3	23001	broad.mit.edu	37	4	85663060	85663060	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:85663060G>A	uc003hpd.2	-	38	6496	c.6088C>T	c.(6088-6090)CTG>TTG	p.L2030L		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2030						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GTAATAGGCAGAGATGCATCT	0.408													16	20					0	0	0.004990	0	0
IBSP	3381	broad.mit.edu	37	4	88732550	88732550	+	Missense_Mutation	SNP	G	A	A	rs144185482		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:88732550G>A	uc003hqx.3	+	7	540	c.442G>A	c.(442-444)GAA>AAA	p.E148K		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	148	Asp/Glu-rich (acidic).				biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		AAAAGAGAAGGAAAGTGATga	0.279													12	15					0	0	0.001368	0	0
MEPE	56955	broad.mit.edu	37	4	88766623	88766623	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:88766623C>T	uc003hqy.2	+	4	642	c.603C>T	c.(601-603)TCC>TCT	p.S201S	MEPE_uc010ikn.2_Silent_p.S88S	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	201					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		AAAGAGATTCCCAAGCCCAGA	0.383													29	32					0	0	0.007291	0	0
MEPE	56955	broad.mit.edu	37	4	88766655	88766655	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:88766655G>A	uc003hqy.2	+	4	674	c.635G>A	c.(634-636)AGC>AAC	p.S212N	MEPE_uc010ikn.2_Missense_Mutation_p.S99N	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	212					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		AAAAGCAAAAGCACCCATCGT	0.383													24	31					0	0	0.002780	0	0
GRID2	2895	broad.mit.edu	37	4	94690473	94690473	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:94690473G>A	uc011cdt.1	+	15	2731	c.2473G>A	c.(2473-2475)GCC>ACC	p.A825T	GRID2_uc011cdu.1_Missense_Mutation_p.A730T	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	825	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GAAAGGAGGCGCCCTGGACAT	0.517													36	35					0	0	0.005524	0	0
UNC5C	8633	broad.mit.edu	37	4	96140146	96140146	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:96140146C>T	uc003htp.1	-	9	1773	c.1619G>A	c.(1618-1620)GGA>GAA	p.G540E	UNC5C_uc010ilc.1_Missense_Mutation_p.G559E|UNC5C_uc003htq.2_Missense_Mutation_p.G559E	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	540	Cytoplasmic (Potential).|ZU5.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		AAGGTGACCTCCCAGCGAGTT	0.443													33	44					0	0	0.004878	0	0
ADH4	127	broad.mit.edu	37	4	100052668	100052668	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:100052668C>T	uc003hun.2	-	6	906	c.830G>A	c.(829-831)GGA>GAA	p.G277E	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.G296E	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	277					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	GGTTTCAGATCCACCTGCACA	0.383													16	23					0	0	0.004990	0	0
ADH1B	125	broad.mit.edu	37	4	100232728	100232728	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:100232728T>C	uc003hus.3	-	7	998	c.914A>G	c.(913-915)AAC>AGC	p.N305S	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.N265S|ADH1B_uc011ceh.1_Missense_Mutation_p.N150S|ADH1B_uc011cei.1_Missense_Mutation_p.N265S	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	305					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	CAGCATAGGGTTTATTGAGAG	0.443													81	99					0	0	0.003610	0	0
MTTP	4547	broad.mit.edu	37	4	100529971	100529971	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:100529971G>A	uc003hvc.3	+	13	1862	c.1606G>A	c.(1606-1608)GAA>AAA	p.E536K	MTTP_uc011cej.1_Missense_Mutation_p.E563K	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	536	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	TAAAGTTCATGAAAAGACTGT	0.398													24	49					0	0	0.002780	0	0
SLC39A8	64116	broad.mit.edu	37	4	103236961	103236961	+	Silent	SNP	G	A	A	rs139422652		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:103236961G>A	uc003hwb.1	-	2	775	c.246C>T	c.(244-246)TCC>TCT	p.S82S	SLC39A8_uc011ceo.1_Silent_p.S82S|SLC39A8_uc003hwa.1_Silent_p.S15S|SLC39A8_uc003hwc.2_Silent_p.S82S	NM_022154	NP_071437	Q9C0K1	S39A8_HUMAN	solute carrier family 39 (zinc transporter),	82	Cytoplasmic (Potential).					integral to membrane|organelle membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(203;0.217)		all cancers(1;9.78e-10)|OV - Ovarian serous cystadenocarcinoma(123;1.52e-09)|GBM - Glioblastoma multiforme(1;0.000142)		AGCCATGAAGGGAAAAGATCT	0.353													43	32					0	0	0.002522	0	0
NFKB1	4790	broad.mit.edu	37	4	103534712	103534712	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:103534712C>T	uc011ceq.1	+	23	3187	c.2720C>T	c.(2719-2721)TCG>TTG	p.S907L	NFKB1_uc011cep.1_Missense_Mutation_p.S908L|NFKB1_uc011cer.1_Missense_Mutation_p.S727L	NM_003998	NP_003989	P19838	NFKB1_HUMAN	nuclear factor kappa-B, subunit 1 isoform 1	907	Interaction with CFLAR.			S->A: Prevents p105 proteolysis in response to TNF-alpha.	anti-apoptosis|apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of calcidiol 1-monooxygenase activity|nerve growth factor receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter	cytosol|I-kappaB/NF-kappaB complex|mitochondrion|nucleoplasm	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|breast(2)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.59e-08)	Dexamethasone(DB01234)|Pranlukast(DB01411)|Thalidomide(DB01041)	CTGCCTCTCTCGCCTGCCTCC	0.527													15	18					0	0	0.007413	0	0
TACR3	6870	broad.mit.edu	37	4	104577402	104577402	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:104577402G>A	uc003hxe.1	-	3	980	c.837C>T	c.(835-837)ATC>ATT	p.I279I		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	279	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TATCTCCTGGGATTTCTCCTC	0.403													48	51					0	0	0.003610	0	0
TACR3	6870	broad.mit.edu	37	4	104640528	104640528	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:104640528C>T	uc003hxe.1	-	1	448	c.305G>A	c.(304-306)GGA>GAA	p.G102E		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	102	Helical; Name=1; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		GATGAGATTTCCCAAAACTGC	0.597													27	43					0	0	0.002445	0	0
EGF	1950	broad.mit.edu	37	4	110925679	110925679	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:110925679G>A	uc003hzy.3	+	22	3644	c.3192G>A	c.(3190-3192)TCG>TCA	p.S1064S	EGF_uc011cfu.1_Silent_p.S1022S|EGF_uc011cfv.1_Silent_p.S1023S|EGF_uc010imk.2_Silent_p.S212S	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	1064	Cytoplasmic (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	AGCTGCTATCGAAAAACCCAA	0.473													65	84					0	0	0.003610	0	0
ELOVL6	79071	broad.mit.edu	37	4	110972566	110972566	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:110972566G>A	uc003hzz.2	-	5	852	c.726C>T	c.(724-726)TAC>TAT	p.Y242Y	ELOVL6_uc003iaa.2_Silent_p.Y242Y	NM_001130721	NP_001124193	Q9H5J4	ELOV6_HUMAN	elongation of very long chain fatty acids-like	242	Helical; (Potential).				fatty acid elongation, saturated fatty acid|long-chain fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process		fatty acid elongase activity|protein binding			haematopoietic_and_lymphoid_tissue(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00462)		AGAGCACAAGGTAGCTGAGGT	0.473													46	61					0	0	0.003610	0	0
ALPK1	80216	broad.mit.edu	37	4	113352475	113352475	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:113352475C>T	uc003iap.3	+	11	2051	c.1772C>T	c.(1771-1773)TCC>TTC	p.S591F	ALPK1_uc003ian.3_Missense_Mutation_p.S591F|ALPK1_uc011cfx.1_Missense_Mutation_p.S513F|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Missense_Mutation_p.S419F	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	591							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		GGGTTTAGTTCCTCTGCAAGC	0.512													36	34					0	0	0.003755	0	0
TRPC3	7222	broad.mit.edu	37	4	122846350	122846350	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:122846350C>T	uc003ieg.2	-	3	1073	c.999G>A	c.(997-999)CGG>CGA	p.R333R	TRPC3_uc010inr.2_Silent_p.R260R|TRPC3_uc003ief.2_Silent_p.R260R|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	248	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TGGAGAGCTTCCGATAGTCAT	0.348													26	32					0	0	0.003954	0	0
FAT4	79633	broad.mit.edu	37	4	126412606	126412606	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:126412606G>A	uc003ifj.3	+	17	14629	c.14629G>A	c.(14629-14631)GAT>AAT	p.D4877N	FAT4_uc011cgp.1_Missense_Mutation_p.D3118N|FAT4_uc003ifi.1_Missense_Mutation_p.D2354N	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4877	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAATGAATCTGATGCAGATGA	0.493													31	37					0	0	0.003755	0	0
PCDH18	54510	broad.mit.edu	37	4	138451272	138451272	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:138451272G>A	uc003ihe.3	-	1	2358	c.1971C>T	c.(1969-1971)ATC>ATT	p.I657I	PCDH18_uc003ihf.3_Silent_p.I650I|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.I437I|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	657	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGTCCTGAATGATAACTGACA	0.423													68	106					0	0	0.003610	0	0
PCDH18	54510	broad.mit.edu	37	4	138451460	138451460	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:138451460C>T	uc003ihe.3	-	1	2170	c.1783G>A	c.(1783-1785)GAA>AAA	p.E595K	PCDH18_uc003ihf.3_Missense_Mutation_p.E588K|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.E375K|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	595	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					AAGCCACTTTCAGCCCCTTTG	0.453													90	104					0	0	0.003610	0	0
ZNF827	152485	broad.mit.edu	37	4	146686844	146686844	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:146686844G>A	uc003ikn.2	-	12	2955	c.2907C>T	c.(2905-2907)TCC>TCT	p.S969S	ZNF827_uc003ikm.2_Silent_p.S969S|ZNF827_uc010iox.2_Silent_p.S619S|ZNF827_uc003ikl.2_Silent_p.S54S	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	969	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CTGAGAGGGAGGATGAAGAGG	0.463													42	51					0	0	0.003610	0	0
LRBA	987	broad.mit.edu	37	4	151247031	151247031	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:151247031C>T	uc010ipj.2	-	50	7889	c.7415G>A	c.(7414-7416)CGA>CAA	p.R2472Q	LRBA_uc010ipi.2_Intron|LRBA_uc003ils.3_Missense_Mutation_p.R362Q|LRBA_uc003ilt.3_Missense_Mutation_p.R1120Q|LRBA_uc003ilu.3_Missense_Mutation_p.R2461Q	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2472	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TCCAAAACTTCGGATTTGAGC	0.453													9	13					0	0	0.008291	0	0
TLR2	7097	broad.mit.edu	37	4	154624805	154624805	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:154624805C>T	uc003inq.2	+	3	965	c.746C>T	c.(745-747)TCA>TTA	p.S249L	TLR2_uc003inr.2_Missense_Mutation_p.S249L|TLR2_uc003ins.2_Missense_Mutation_p.S249L	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	249	Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				GAAACAAATTCATTGATTAAA	0.313													23	25					0	0	0.002299	0	0
PLRG1	5356	broad.mit.edu	37	4	155461949	155461949	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:155461949G>A	uc003iny.2	-	9	888	c.825C>T	c.(823-825)CTC>CTT	p.L275L	PLRG1_uc003inz.2_Silent_p.L266L|PLRG1_uc011cil.1_Silent_p.L114L	NM_002669	NP_002660	O43660	PLRG1_HUMAN	pleiotropic regulator 1 (PRL1 homolog,	275	WD 2.					catalytic step 2 spliceosome|nuclear speck	protein binding|signal transducer activity|transcription corepressor activity				0	all_hematologic(180;0.215)	Renal(120;0.0854)				TATTGTATTCGAGATCCCAGC	0.373													47	38					0	0	0.003610	0	0
FGA	2243	broad.mit.edu	37	4	155509998	155509998	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:155509998G>A	uc003iod.1	-	3	369	c.311C>T	c.(310-312)TCG>TTG	p.S104L	FGA_uc003ioe.1_Missense_Mutation_p.S104L|FGA_uc003iof.1_Missense_Mutation_p.S104L	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	104	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AGTGGTCAACGAATGAGAATC	0.294													88	98					0	0	0.003610	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156618034	156618034	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:156618034G>A	uc003iov.2	+	4	551	c.15G>A	c.(13-15)AAG>AAA	p.K5K	GUCY1A3_uc003iou.2_Silent_p.K5K|GUCY1A3_uc010iqc.2_Silent_p.K5K|GUCY1A3_uc003iow.2_Silent_p.K5K|GUCY1A3_uc010iqd.2_Silent_p.K5K|GUCY1A3_uc003iox.2_Silent_p.K5K|GUCY1A3_uc003ioz.2_Intron|GUCY1A3_uc003ioy.2_Silent_p.K5K|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Silent_p.K5K	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	5					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TCTGCACGAAGCTCAAGGATC	0.488													14	18					0	0	0.004007	0	0
PDGFC	56034	broad.mit.edu	37	4	157771443	157771443	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:157771443C>T	uc003iph.1	-	2	735	c.244G>A	c.(244-246)GAA>AAA	p.E82K	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_Intron|PDGFC_uc011cir.1_5'UTR	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	82	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		CATACATTTTCCTCTACTGCT	0.368													22	25					0	0	0.002780	0	0
GLRB	2743	broad.mit.edu	37	4	158060056	158060056	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:158060056G>A	uc003ipj.2	+	7	908	c.706G>A	c.(706-708)GAA>AAA	p.E236K		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	236	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	TATCAAAAAGGAAGATATTGA	0.299													39	55					0	0	0.005524	0	0
TLL1	7092	broad.mit.edu	37	4	166915560	166915560	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:166915560G>A	uc003irh.1	+	4	1036	c.389G>A	c.(388-390)GGA>GAA	p.G130E	TLL1_uc011cjn.1_Missense_Mutation_p.G130E|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	130					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		ACAGTTAAGGGAAAAGTACCT	0.418													24	20					0	0	0.006320	0	0
TLL1	7092	broad.mit.edu	37	4	166916232	166916232	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:166916232C>T	uc003irh.1	+	5	1181	c.534C>T	c.(532-534)TTC>TTT	p.F178F	TLL1_uc011cjn.1_Silent_p.F178F|TLL1_uc011cjo.1_Silent_p.F2F	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	178	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GAGCCATGTTCAAGCAGGCCA	0.453													49	54					0	0	0.003610	0	0
TLL1	7092	broad.mit.edu	37	4	166929157	166929157	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:166929157G>A	uc003irh.1	+	7	1521	c.874G>A	c.(874-876)GAT>AAT	p.D292N	TLL1_uc011cjn.1_Missense_Mutation_p.D292N|TLL1_uc011cjo.1_Missense_Mutation_p.D116N	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	292	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AGAAAGATATGATTTCGACAG	0.408													22	41					0	0	0.003330	0	0
SPOCK3	50859	broad.mit.edu	37	4	167675767	167675767	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:167675767G>A	uc003iri.1	-	9	973	c.832C>T	c.(832-834)CTT>TTT	p.L278F	SPOCK3_uc011cjp.1_Missense_Mutation_p.L235F|SPOCK3_uc011cjq.1_Missense_Mutation_p.L287F|SPOCK3_uc011cjr.1_Missense_Mutation_p.L158F|SPOCK3_uc003irj.1_Missense_Mutation_p.L275F|SPOCK3_uc011cjs.1_Missense_Mutation_p.L227F|SPOCK3_uc011cjt.1_Missense_Mutation_p.L186F|SPOCK3_uc011cju.1_Missense_Mutation_p.L171F|SPOCK3_uc011cjv.1_Missense_Mutation_p.L180F|SPOCK3_uc003irk.3_Missense_Mutation_p.L275F	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	278					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		TTCTTATCAAGGTAAATGCTT	0.403													36	39					0	0	0.004289	0	0
HPGD	3248	broad.mit.edu	37	4	175413236	175413236	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:175413236C>T	uc003itu.2	-	7	862	c.672G>A	c.(670-672)TTG>TTA	p.L224L	HPGD_uc003itt.2_Silent_p.L91L|HPGD_uc003itv.2_Missense_Mutation_p.D170N|HPGD_uc011ckf.1_Silent_p.L103L|HPGD_uc010irp.2_Silent_p.L103L|HPGD_uc010irq.2_Silent_p.*144*|HPGD_uc011ckg.1_Silent_p.L156L|HPGD_uc011ckh.1_Silent_p.L103L	NM_000860	NP_000851	P15428	PGDH_HUMAN	hydroxyprostaglandin dehydrogenase 15-(NAD)	224					female pregnancy|lipoxygenase pathway|negative regulation of cell cycle|parturition|prostaglandin metabolic process|transforming growth factor beta receptor signaling pathway	cytosol|nucleus	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|NAD+ binding|prostaglandin E receptor activity|protein homodimerization activity				0		Prostate(90;0.00763)|Melanoma(52;0.0179)|Renal(120;0.0376)|Breast(14;0.0991)|all_hematologic(60;0.124)|all_neural(102;0.196)		all cancers(43;2.6e-18)|Epithelial(43;4.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.23e-09)|GBM - Glioblastoma multiforme(59;0.00176)|STAD - Stomach adenocarcinoma(60;0.00299)|LUSC - Lung squamous cell carcinoma(193;0.0253)	NADH(DB00157)	CATTGGCAATCAATGGTGGGC	0.303													78	106					0	0	0.003610	0	0
GLRA3	8001	broad.mit.edu	37	4	175649639	175649639	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:175649639G>A	uc003ity.1	-	4	981	c.478C>T	c.(478-480)CTT>TTT	p.L160F	GLRA3_uc003itz.1_Missense_Mutation_p.L160F	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	160	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	ATTGAATAAAGAACATTTCCA	0.343													30	26					0	0	0.006320	0	0
ADAM29	11086	broad.mit.edu	37	4	175898264	175898264	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:175898264C>T	uc003iuc.2	+	5	2258	c.1588C>T	c.(1588-1590)CGT>TGT	p.R530C	ADAM29_uc003iud.2_Missense_Mutation_p.R530C|ADAM29_uc010irr.2_Missense_Mutation_p.R530C|ADAM29_uc011cki.1_Missense_Mutation_p.R530C	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	530	Cys-rich.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CTTAGGTGACCGTGTTGGTCA	0.418													26	38					0	0	0.004656	0	0
VEGFC	7424	broad.mit.edu	37	4	177608992	177608992	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:177608992G>A	uc003ius.1	-	5	1224	c.794C>T	c.(793-795)TCC>TTC	p.S265F		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	265					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		AGCATCCGAGGAAAACATAAA	0.413													46	44					0	0	0.003610	0	0
ODZ3	55714	broad.mit.edu	37	4	183635383	183635383	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:183635383G>A	uc003ivd.1	+	12	2402	c.2365G>A	c.(2365-2367)GGA>AGA	p.G789R	ODZ3_uc003ive.1_Missense_Mutation_p.G195R	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	789	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGACAATGAAGGAGGTAAGAA	0.463													10	11					0	0	0.006214	0	0
SNX25	83891	broad.mit.edu	37	4	186185657	186185657	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:186185657G>A	uc003ixh.2	+	4	494	c.305G>A	c.(304-306)AGA>AAA	p.R102K		NM_031953	NP_114159	Q9H3E2	SNX25_HUMAN	sorting nexin 25	102	PXA.				cell communication|protein transport	endosome membrane	phosphatidylinositol binding|signal transducer activity			ovary(2)|breast(2)|pancreas(1)	5		all_lung(41;1.03e-13)|Lung NSC(41;2.5e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;2.13e-24)|Epithelial(43;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.6e-11)|BRCA - Breast invasive adenocarcinoma(30;0.00013)|Colorectal(24;0.000165)|GBM - Glioblastoma multiforme(59;0.000357)|COAD - Colon adenocarcinoma(29;0.000887)|STAD - Stomach adenocarcinoma(60;0.00118)|LUSC - Lung squamous cell carcinoma(40;0.0129)|READ - Rectum adenocarcinoma(43;0.228)		GATGAAGTAAGATTTCTACAA	0.413													46	51					0	0	0.003610	0	0
SORBS2	8470	broad.mit.edu	37	4	186545032	186545032	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:186545032G>A	uc003iyl.2	-	13	2397	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Silent_p.F613F|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Silent_p.F417F|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Silent_p.F627F|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	513						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		TCAGCTTTTCGAATTCGGAGA	0.572													45	48					0	0	0.003610	0	0
TLR3	7098	broad.mit.edu	37	4	187003870	187003870	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:187003870C>T	uc003iyq.2	+	4	1131	c.1030C>T	c.(1030-1032)CCC>TCC	p.P344S	TLR3_uc011ckz.1_Missense_Mutation_p.P67S|TLR3_uc003iyr.2_Missense_Mutation_p.P67S	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	344	Lumenal (Potential).|LRR 12.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TGCCTCACTCCCCAAGATTGA	0.378													18	39					0	0	0.007413	0	0
CYP4V2	285440	broad.mit.edu	37	4	187130396	187130396	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:187130396C>T	uc003iyw.3	+	10	1679	c.1375C>T	c.(1375-1377)CCC>TCC	p.P459S	CYP4V2_uc010ism.2_RNA	NM_207352	NP_997235	Q6ZWL3	CP4V2_HUMAN	cytochrome P450, family 4, subfamily v,	459					response to stimulus|visual perception	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.33e-10)|BRCA - Breast invasive adenocarcinoma(30;3.84e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000293)|LUSC - Lung squamous cell carcinoma(40;0.00242)|READ - Rectum adenocarcinoma(43;0.17)		TGCCTACGTGCCCTTCTCTGC	0.522													37	40					0	0	0.007835	0	0
KLKB1	3818	broad.mit.edu	37	4	187158058	187158058	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:187158058C>T	uc003iyy.2	+	5	523	c.452C>T	c.(451-453)TCA>TTA	p.S151L	KLKB1_uc011clc.1_5'UTR|KLKB1_uc011cld.1_Missense_Mutation_p.S113L	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	151	Apple 2.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		CAGTTTTTTTCATATGCCACG	0.413													25	32					0	0	0.005443	0	0
FAT1	2195	broad.mit.edu	37	4	187554955	187554955	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:187554955G>A	uc003izf.2	-	7	4394	c.4206C>T	c.(4204-4206)TTC>TTT	p.F1402F		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1402	Extracellular (Potential).|Cadherin 12.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TGTCCACATCGAAGTGACTGT	0.423										HNSCC(5;0.00058)			29	42					0	0	0.009535	0	0
CTNND2	1501	broad.mit.edu	37	5	11397206	11397206	+	Silent	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:11397206G>T	uc003jfa.1	-	6	694	c.549C>A	c.(547-549)ACC>ACA	p.T183T	CTNND2_uc010itt.2_Silent_p.T92T|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_Intron	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	183					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GTGAAGGGGTGGTTTCCCCCA	0.597													28	37					6.32553e-13	1.00296e-12	0.004656	1	0
DNAH5	1767	broad.mit.edu	37	5	13766175	13766175	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:13766175C>T	uc003jfd.2	-	59	10053	c.10011G>A	c.(10009-10011)GTG>GTA	p.V3337V	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3337	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTCAATTTTCACAGCACTGA	0.493									Kartagener_syndrome				36	64					0	0	0.004878	0	0
DNAH5	1767	broad.mit.edu	37	5	13829759	13829759	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:13829759G>A	uc003jfd.2	-	38	6346	c.6304C>T	c.(6304-6306)CGC>TGC	p.R2102C		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2102	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCCACTGAGCGGAAATTAATC	0.448									Kartagener_syndrome				39	46					0	0	0.003214	0	0
DNAH5	1767	broad.mit.edu	37	5	13841099	13841099	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:13841099C>T	uc003jfd.2	-	34	5667	c.5625G>A	c.(5623-5625)ACG>ACA	p.T1875T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1875	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCAGATCCCTCGTGGTGACGT	0.393									Kartagener_syndrome				26	42					0	0	0.006320	0	0
DNAH5	1767	broad.mit.edu	37	5	13841969	13841969	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:13841969C>T	uc003jfd.2	-	33	5358	c.5316G>A	c.(5314-5316)ACG>ACA	p.T1772T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1772	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCAATTCAATCGTCTCACCCT	0.353									Kartagener_syndrome				25	50					0	0	0.006320	0	0
DNAH5	1767	broad.mit.edu	37	5	13901544	13901544	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:13901544G>A	uc003jfd.2	-	14	1911	c.1869C>T	c.(1867-1869)ATC>ATT	p.I623I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	623	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTTTCCAGCGATGGGAGGCT	0.502									Kartagener_syndrome				10	15					0	0	0.008291	0	0
CDH12	1010	broad.mit.edu	37	5	21842282	21842282	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:21842282G>A	uc010iuc.2	-	5	1260	c.802C>T	c.(802-804)CGA>TGA	p.R268*	CDH12_uc011cno.1_Nonsense_Mutation_p.R228*|CDH12_uc003jgk.2_Nonsense_Mutation_p.R268*	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	268	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TTGGGGAATCGAGGTGGATTG	0.403										HNSCC(59;0.17)			48	47					0	0	0.003610	0	0
CDH10	1008	broad.mit.edu	37	5	24488164	24488164	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:24488164C>T	uc003jgr.1	-	12	2307	c.1975G>A	c.(1975-1977)GAT>AAT	p.D659N	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	659	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CCACCCTCATCGTTATAGCTC	0.453										HNSCC(23;0.051)			45	57					0	0	0.003610	0	0
CDH9	1007	broad.mit.edu	37	5	26890572	26890572	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:26890572G>A	uc003jgs.1	-	8	1524	c.1355C>T	c.(1354-1356)CCT>CTT	p.P452L	CDH9_uc011cnv.1_Missense_Mutation_p.P45L	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	452	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GTTATGCCAAGGAGATGATTC	0.398													25	47					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	5	28927157	28927157	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:28927157G>A	uc003jgz.1	+	1		c.181G>A								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		CTTCCTACAGGGAGAAAGGAA	0.458													4	15					0	0	0.002450	0	0
CDH6	1004	broad.mit.edu	37	5	31317547	31317547	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:31317547C>T	uc003jhe.1	+	10	1904	c.1578C>T	c.(1576-1578)TCC>TCT	p.S526S	CDH6_uc003jhd.1_Silent_p.S526S	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	526	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TTTCGTTTTCCTTGGCCCCTG	0.408													46	41					0	0	0.003610	0	0
CDH6	1004	broad.mit.edu	37	5	31323152	31323152	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:31323152C>T	uc003jhe.1	+	12	2436	c.2110C>T	c.(2110-2112)CCA>TCA	p.P704S		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	704	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CCGACGGACTCCAACAGCTCG	0.522													22	31					0	0	0.001882	0	0
C1QTNF3	114899	broad.mit.edu	37	5	34033477	34033477	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:34033477G>A	uc003jin.2	-	3	370	c.283C>T	c.(283-285)CGA>TGA	p.R95*	C1QTNF3_uc003jio.2_Nonsense_Mutation_p.R168*	NM_030945	NP_112207	Q9BXJ4	C1QT3_HUMAN	C1q and tumor necrosis factor related protein 3	95	Collagen-like.					collagen					0	all_lung(31;0.0207)					CGCTCCCCTCGAGGCCCCAGG	0.562													32	41					0	0	0.003271	0	0
SPEF2	79925	broad.mit.edu	37	5	35806810	35806810	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:35806810C>T	uc003jjo.2	+	35	5123	c.5012C>T	c.(5011-5013)ACC>ATC	p.T1671I	SPEF2_uc003jjp.1_Missense_Mutation_p.T1157I|SPEF2_uc003jjr.2_Missense_Mutation_p.T726I	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1671					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACTTTGCAGACCTCCTCAACT	0.378													17	21					0	0	0.010504	0	0
SPEF2	79925	broad.mit.edu	37	5	35807313	35807313	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:35807313T>C	uc003jjo.2	+	36	5448	c.5337T>C	c.(5335-5337)TTT>TTC	p.F1779F	SPEF2_uc003jjp.1_Silent_p.F1265F|SPEF2_uc003jjr.2_Silent_p.F834F	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1779					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGCATCCTTTTATTCAAGACC	0.393													86	98					0	0	0.003610	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049520	36049520	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:36049520C>T	uc003jjz.1	-	4	407	c.314G>A	c.(313-315)GGA>GAA	p.G105E	UGT3A2_uc011cos.1_Missense_Mutation_p.G71E|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	105	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTCAAATTTTCCTCTGTAAGA	0.284													19	24					0	0	0.001882	0	0
EGFLAM	133584	broad.mit.edu	37	5	38352305	38352305	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:38352305C>T	uc003jlc.1	+	5	741	c.417C>T	c.(415-417)TGC>TGT	p.C139C	EGFLAM_uc003jlb.1_Silent_p.C139C	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	139						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TAGATTCCTGCCTGCCTCCTG	0.562													37	62					0	0	0.002852	0	0
DAB2	1601	broad.mit.edu	37	5	39377290	39377290	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:39377290C>T	uc003jlx.2	-	12	2130	c.1599G>A	c.(1597-1599)ATG>ATA	p.M533I	DAB2_uc003jlw.2_Missense_Mutation_p.M512I	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	533					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GTTGACCACCCATCATGGCTC	0.527													39	32					0	0	0.007835	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000375	41000375	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:41000375C>T	uc003jmj.3	-	39	4919	c.4429G>A	c.(4429-4431)GAT>AAT	p.D1477N	HEATR7B2_uc003jmi.3_Missense_Mutation_p.D1032N	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1477							binding			ovary(6)|central_nervous_system(2)	8						AGATCCTGATCAAGGAGACGG	0.502													25	37					0	0	0.005443	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41004526	41004526	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:41004526G>A	uc003jmj.3	-	37	4606	c.4116C>T	c.(4114-4116)ATC>ATT	p.I1372I	HEATR7B2_uc003jmi.3_Silent_p.I927I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1372	HEAT 15.						binding	p.I1372T(1)		ovary(6)|central_nervous_system(2)	8						GCAGCTCCAGGATTTTTTTTA	0.438													51	52					0	0	0.003610	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41054941	41054941	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:41054941C>T	uc003jmj.3	-	11	1525	c.1035G>A	c.(1033-1035)GAG>GAA	p.E345E	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	345	HEAT 4.						binding			ovary(6)|central_nervous_system(2)	8						TCAACCTGGGCTCTGAAAGAC	0.378													25	29					0	0	0.008361	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41065475	41065475	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:41065475C>T	uc003jmj.3	-	4	809	c.319G>A	c.(319-321)GAA>AAA	p.E107K		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	107							binding			ovary(6)|central_nervous_system(2)	8						ACAACGAATTCATCTGGTAGC	0.418													12	13					0	0	0.001368	0	0
C6	729	broad.mit.edu	37	5	41199975	41199975	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:41199975C>T	uc003jmk.2	-	4	550	c.340G>A	c.(340-342)GGA>AGA	p.G114R	C6_uc003jml.1_Missense_Mutation_p.G114R	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	114	TSP type-1 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CATGGCTGTCCCCCAAACTGA	0.448													13	18					0	0	0.001368	0	0
EMB	133418	broad.mit.edu	37	5	49707186	49707186	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:49707186G>A	uc003jom.2	-	3	477	c.228C>T	c.(226-228)ATC>ATT	p.I76I	EMB_uc003jol.2_Silent_p.I7I|EMB_uc011cpy.1_Silent_p.I26I|EMB_uc010ivr.2_Intron	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	76	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				TTTCTAAAGTGATATTTTTTT	0.333													40	41					0	0	0.003214	0	0
ARL15	54622	broad.mit.edu	37	5	53467730	53467730	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:53467730G>A	uc003jpg.1	-	2	171	c.77C>T	c.(76-78)CCA>CTA	p.P26L	ARL15_uc010ivs.1_Intron	NM_019087	NP_061960	Q9NXU5	ARL15_HUMAN	ADP-ribosylation factor-like 15	26							GTP binding			ovary(1)	1		Lung NSC(810;0.000779)				TGCAGGTGGTGGTCCCTTGCA	0.433													13	22					0	0	0.002450	0	0
DDX4	54514	broad.mit.edu	37	5	55109503	55109503	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:55109503G>A	uc003jqg.3	+	19	1692	c.1618G>A	c.(1618-1620)GAT>AAT	p.D540N	DDX4_uc010ivz.2_Missense_Mutation_p.D520N|DDX4_uc003jqh.3_Missense_Mutation_p.D506N|DDX4_uc003jqj.2_Missense_Mutation_p.D391N	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	540	Helicase C-terminal.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				TCTTGTAGGGGATGAAAGAAC	0.244													77	109					0	0	0.003610	0	0
ACTBL2	345651	broad.mit.edu	37	5	56778487	56778487	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:56778487C>T	uc003jrm.2	-	1	150	c.48G>A	c.(46-48)GGG>GGA	p.G16G		NM_001017992	NP_001017992	Q562R1	ACTBL_HUMAN	actin, beta-like 2	16						cytoplasm|cytoskeleton	ATP binding			ovary(3)	3		Lung NSC(810;0.000135)|Prostate(74;0.055)|Breast(144;0.0707)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;4.24e-37)		CCTTGCACATCCCTGACCCAT	0.567													16	22					0	0	0.004007	0	0
RAB3C	115827	broad.mit.edu	37	5	58021869	58021869	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:58021869C>T	uc003jrp.2	+	3	390	c.293C>T	c.(292-294)GCC>GTC	p.A98V		NM_138453	NP_612462	Q96E17	RAB3C_HUMAN	RAB3C, member RAS oncogene family	98					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)|central_nervous_system(1)	2		all_cancers(5;9.93e-10)|all_epithelial(5;1.49e-10)|all_lung(5;8.97e-05)|Lung NSC(5;0.000139)|Prostate(74;0.0664)		OV - Ovarian serous cystadenocarcinoma(10;1.8e-34)		ATCACCACAGCCTATTATCGT	0.358													37	50					0	0	0.007835	0	0
RAB3C	115827	broad.mit.edu	37	5	58120906	58120906	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:58120906T>G	uc003jrp.2	+	4	510	c.413T>G	c.(412-414)GTT>GGT	p.V138G		NM_138453	NP_612462	Q96E17	RAB3C_HUMAN	RAB3C, member RAS oncogene family	138					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)|central_nervous_system(1)	2		all_cancers(5;9.93e-10)|all_epithelial(5;1.49e-10)|all_lung(5;8.97e-05)|Lung NSC(5;0.000139)|Prostate(74;0.0664)		OV - Ovarian serous cystadenocarcinoma(10;1.8e-34)		AATGCCCAAGTTATTCTGGTT	0.398													30	22					0	0	0.002096	0	0
IPO11	51194	broad.mit.edu	37	5	61763082	61763082	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:61763082C>T	uc003jtc.2	+	6	831	c.641C>T	c.(640-642)TCA>TTA	p.S214L	IPO11_uc011cqr.1_Missense_Mutation_p.S254L|IPO11_uc003jtb.1_Missense_Mutation_p.S214L	NM_016338	NP_057422	Q9UI26	IPO11_HUMAN	Ran binding protein 11 isoform 2	214	HEAT 2.					cytoplasm|nucleus	protein binding			lung(2)|skin(2)	4		Lung NSC(810;8.99e-06)|Prostate(74;0.0235)|Ovarian(174;0.0511)|Breast(144;0.077)		Lung(70;0.0613)		ACACTGCTATCATTGAAAGGT	0.403													40	50					0	0	0.002852	0	0
HTR1A	3350	broad.mit.edu	37	5	63256305	63256305	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:63256305G>A	uc011cqt.1	-	1	1242	c.1242C>T	c.(1240-1242)ATC>ATT	p.I414I		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	414	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	TACACTTAATGATCTTCTTAA	0.507													88	121					0	0	0.003610	0	0
CD180	4064	broad.mit.edu	37	5	66479840	66479840	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:66479840C>T	uc003juy.2	-	3	979	c.831G>A	c.(829-831)GAG>GAA	p.E277E		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	277	Extracellular (Potential).|LRR 8.				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		GGTTGAGGCTCTCAACAGACA	0.468													37	35					0	0	0.005524	0	0
OCLN	4950	broad.mit.edu	37	5	68805261	68805261	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:68805261G>A	uc003jwu.2	+	3	780	c.344G>A	c.(343-345)GGA>GAA	p.G115E	OCLN_uc003jwv.3_Missense_Mutation_p.G115E	NM_002538	NP_002529			occludin												0		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		GGTAGCTACGGAAGtggctat	0.443													43	55					0	0	0.007835	0	0
LOC647859	647859	broad.mit.edu	37	5	70378606	70378606	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:70378606G>A	uc011cru.1	-	2	238	c.170C>T	c.(169-171)TCA>TTA	p.S57L	NAIP_uc003kat.1_Intron	NM_002538	NP_002529			occludin												0						GTCGGTACCTGATCCAGTCCT	0.507													21	2					0	0	0.005443	0	0
BDP1	55814	broad.mit.edu	37	5	70806623	70806623	+	Missense_Mutation	SNP	C	T	T	rs5868598		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:70806623C>T	uc003kbp.1	+	17	3967	c.3704C>T	c.(3703-3705)TCC>TTC	p.S1235F	BDP1_uc003kbn.1_Missense_Mutation_p.S1235F|BDP1_uc003kbo.2_Missense_Mutation_p.S1235F	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1235	Potential.|9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.|8; approximate.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		GAAGAAATTTCCCAAAGGGAA	0.398													72	66					0	0	0.003610	0	0
PTCD2	79810	broad.mit.edu	37	5	71622474	71622474	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:71622474C>A	uc003kcb.2	+	3	266	c.256C>A	c.(256-258)CAG>AAG	p.Q86K	PTCD2_uc011csf.1_5'UTR|PTCD2_uc003kcc.2_5'UTR|PTCD2_uc011csg.1_5'UTR|PTCD2_uc011csh.1_Intron|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	86											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		GAAACTGACCCAGAACAAGCT	0.433													54	59					1.54043e-34	2.45724e-34	0.003610	1	0
RGNEF	64283	broad.mit.edu	37	5	73168939	73168939	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:73168939C>T	uc011csq.1	+	21	2693	c.2682C>T	c.(2680-2682)TTC>TTT	p.F894F	RGNEF_uc003kcx.2_Silent_p.F894F|RGNEF_uc010izf.2_Silent_p.F894F|RGNEF_uc011csr.1_Silent_p.F581F	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	894	DH.				cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		ATAAAATTTTCCCCTGTTTAG	0.468													8	10					0	0	0.003080	0	0
FAM169A	26049	broad.mit.edu	37	5	74077563	74077563	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:74077563G>A	uc003kdm.2	-	13	1778	c.1735C>T	c.(1735-1737)CCC>TCC	p.P579S	FAM169A_uc010izm.2_Missense_Mutation_p.P519S|FAM169A_uc003kdl.2_Missense_Mutation_p.P397S	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	579											0						GTTTCCTGGGGCTCAGATACC	0.458													17	16					0	0	0.004007	0	0
F2RL2	2151	broad.mit.edu	37	5	75914364	75914364	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:75914364C>T	uc003kem.2	-	2	353	c.168G>A	c.(166-168)TTG>TTA	p.L56L	IQGAP2_uc003kek.2_Intron|IQGAP2_uc010izv.2_Intron|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron|F2RL2_uc011csw.1_Silent_p.L34L	NM_004101	NP_004092	O00254	PAR3_HUMAN	coagulation factor II (thrombin) receptor-like 2	56	Extracellular (Potential).				platelet activation	extracellular region|integral to plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|thrombin receptor activity			skin(2)|ovary(1)	3		all_lung(232;0.000462)|Lung NSC(167;0.00124)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)		TCCAGCCTTCCAAGGCAGAAA	0.448													71	78					0	0	0.003610	0	0
PDE8B	8622	broad.mit.edu	37	5	76715632	76715632	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:76715632G>A	uc003kfa.2	+	19	2215	c.2170G>A	c.(2170-2172)GTT>ATT	p.V724I	PDE8B_uc003kfb.2_Missense_Mutation_p.V704I|PDE8B_uc003kfc.2_Missense_Mutation_p.V669I|PDE8B_uc003kfd.2_Missense_Mutation_p.V677I|PDE8B_uc003kfe.2_Missense_Mutation_p.V627I	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	724	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		TATTGACATGGTTTTGGCAAC	0.418													261	267					0	0	0.003610	0	0
WDR41	55255	broad.mit.edu	37	5	76754909	76754909	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:76754909G>A	uc003kff.1	-	5	676	c.389C>T	c.(388-390)TCA>TTA	p.S130L	WDR41_uc011csy.1_Missense_Mutation_p.S130L|WDR41_uc011csz.1_Missense_Mutation_p.S75L|WDR41_uc011cta.1_RNA|WDR41_uc011ctb.1_RNA	NM_018268	NP_060738	Q9HAD4	WDR41_HUMAN	WD repeat domain 41	130											0		all_lung(232;0.000961)|Lung NSC(167;0.0011)|Ovarian(174;0.0105)|Prostate(461;0.059)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-50)|Epithelial(54;2.04e-44)|all cancers(79;6.84e-40)		CTGGAAGCATGATATTCTCTG	0.279													54	53					0	0	0.003610	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79854664	79854664	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:79854664C>T	uc010jam.2	-	4	1525	c.1175G>A	c.(1174-1176)GGA>GAA	p.G392E	ANKRD34B_uc003kgw.2_Missense_Mutation_p.G392E|ANKRD34B_uc010jan.2_Missense_Mutation_p.G392E	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	392						cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		CTTTTTCTTTCCTATAAGTGC	0.473													21	28					0	0	0.010504	0	0
VCAN	1462	broad.mit.edu	37	5	82786188	82786188	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:82786188C>T	uc003kii.3	+	3	698	c.342C>T	c.(340-342)TCC>TCT	p.S114S	VCAN_uc003kij.3_Silent_p.S114S|VCAN_uc010jau.2_Silent_p.S114S|VCAN_uc003kik.3_Silent_p.S114S|VCAN_uc003kih.3_Silent_p.S114S	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	114	Ig-like V-type.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GCGATGCCTCCCTCACTGTGG	0.537													49	40					0	0	0.003610	0	0
VCAN	1462	broad.mit.edu	37	5	82833076	82833076	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:82833076C>T	uc003kii.3	+	8	4610	c.4254C>T	c.(4252-4254)ACC>ACT	p.T1418T	VCAN_uc003kij.3_Silent_p.T431T|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.T82T	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1418	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		ATCTCGTTACCACTGTGCCCA	0.428													30	17					0	0	0.002836	0	0
HAPLN1	1404	broad.mit.edu	37	5	82940367	82940367	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:82940367G>A	uc003kim.2	-	3	661	c.590C>T	c.(589-591)GCC>GTC	p.A197V	HAPLN1_uc003kin.2_Missense_Mutation_p.A197V	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	197	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		GCCCCGCCAGGCGTCGTACAG	0.612													17	24					0	0	0.006122	0	0
HAPLN1	1404	broad.mit.edu	37	5	82940383	82940383	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:82940383C>T	uc003kim.2	-	3	645	c.574G>A	c.(574-576)GAC>AAC	p.D192N	HAPLN1_uc003kin.2_Missense_Mutation_p.D192N	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	192	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		TACAGCTGGTCGAAGGAGGCG	0.592													15	16					0	0	0.003163	0	0
GPR98	84059	broad.mit.edu	37	5	90079760	90079760	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:90079760C>T	uc003kju.2	+	67	13635	c.13539C>T	c.(13537-13539)CCC>CCT	p.P4513P	GPR98_uc003kjt.2_Silent_p.P2219P|GPR98_uc003kjw.2_Silent_p.P174P	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4513	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTGACTCTCCCTTTGGAGTTA	0.453													7	7					0	0	0.001984	0	0
GPR98	84059	broad.mit.edu	37	5	90103553	90103553	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:90103553C>G	uc003kju.2	+	73	15067	c.14971C>G	c.(14971-14973)CGA>GGA	p.R4991G	GPR98_uc003kjt.2_Missense_Mutation_p.R2697G|GPR98_uc003kjw.2_Missense_Mutation_p.R652G	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4991	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGCTCAACTCCGGTAAGACCA	0.483													28	27					0	0	0.005443	0	0
ERAP2	64167	broad.mit.edu	37	5	96215576	96215576	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:96215576C>T	uc003kmq.2	+	2	897	c.187C>T	c.(187-189)CCT>TCT	p.P63S	uc003kmo.1_Intron|ERAP2_uc003kmt.2_Missense_Mutation_p.P63S|ERAP2_uc003kmr.2_RNA|ERAP2_uc003kms.2_Missense_Mutation_p.P57S|ERAP2_uc003kmu.2_RNA	NM_022350	NP_071745	Q6P179	ERAP2_HUMAN	endoplasmic reticulum aminopeptidase 2	63	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|proteolysis|regulation of blood pressure	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding				0		all_cancers(142;0.000311)|all_epithelial(76;1.54e-06)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0596)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0703)		GGAACGATTTCCTTGGCAGGA	0.493													20	22					0	0	0.010504	0	0
ERAP2	64167	broad.mit.edu	37	5	96245332	96245332	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:96245332A>G	uc003kmq.2	+	15	2928	c.2218A>G	c.(2218-2220)AGT>GGT	p.S740G	uc003kmo.1_Intron|ERAP2_uc003kmt.2_Missense_Mutation_p.S740G|ERAP2_uc003kmr.2_RNA|ERAP2_uc003kms.2_Missense_Mutation_p.S689G|ERAP2_uc003kmu.2_RNA	NM_022350	NP_071745	Q6P179	ERAP2_HUMAN	endoplasmic reticulum aminopeptidase 2	740	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|proteolysis|regulation of blood pressure	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding				0		all_cancers(142;0.000311)|all_epithelial(76;1.54e-06)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0596)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0703)		GCAAAGCTGGAGTGACAAGGG	0.483													3	83					0	0	0.009096	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100231438	100231438	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:100231438G>A	uc003knk.2	-	2	493	c.165C>T	c.(163-165)ATC>ATT	p.I55I	ST8SIA4_uc003knl.2_Silent_p.I55I	NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	55	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		CCTTTCGAATGATTTTATCAG	0.378													23	27					0	0	0.002780	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101592859	101592859	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:101592859C>T	uc003knm.2	-	8	1716	c.1429G>A	c.(1429-1431)GAA>AAA	p.E477K		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	477	Extracellular (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		GGCTCATTTTCACATTTGGCA	0.323													25	26					0	0	0.004656	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101627249	101627249	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:101627249C>T	uc003knm.2	-	2	704	c.417G>A	c.(415-417)ATG>ATA	p.M139I		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	139	Extracellular (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		GGGAACTCTTCATTTCATAAC	0.338													13	22					0	0	0.002450	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102526558	102526558	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:102526558C>T	uc003kod.3	+	29	3887	c.3368C>T	c.(3367-3369)TCC>TTC	p.S1123F	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.S1102F|PPIP5K2_uc003kof.2_Missense_Mutation_p.S305F	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	1123					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						GAATTGTATTCCATGGTGCCA	0.328													15	34					0	0	0.004007	0	0
TSSK1B	83942	broad.mit.edu	37	5	112770035	112770035	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:112770035G>A	uc003kqm.2	-	1	694	c.502C>T	c.(502-504)CGA>TGA	p.R168*	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	168	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		AATGCCATTCGACCACTGTCA	0.567													23	26					0	0	0.006320	0	0
FTMT	94033	broad.mit.edu	37	5	121188309	121188309	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:121188309G>A	uc003kss.2	+	1	660	c.651G>A	c.(649-651)AAG>AAA	p.K217K		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	217	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		ACTTAGTGAAGATGGGGGCCC	0.507													63	86					0	0	0.003610	0	0
ZNF474	133923	broad.mit.edu	37	5	121487967	121487967	+	Silent	SNP	C	T	T	rs144735279	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:121487967C>T	uc003ksv.2	+	2	658	c.282C>T	c.(280-282)TTC>TTT	p.F94F		NM_207317	NP_997200	Q6S9Z5	ZN474_HUMAN	zinc finger protein 474	94						intracellular	zinc ion binding				0		all_cancers(142;0.229)|Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000197)|Epithelial(69;0.00029)|all cancers(49;0.00415)		GGCCTGGATTCCGGGTATGCT	0.498													58	54					0	0	0.003610	0	0
ALDH7A1	501	broad.mit.edu	37	5	125887820	125887820	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:125887820G>A	uc003ktx.2	-	14	1402	c.1210C>T	c.(1210-1212)CGC>TGC	p.R404C	ALDH7A1_uc003ktv.2_Missense_Mutation_p.R25C|ALDH7A1_uc003kty.2_RNA|ALDH7A1_uc011cxa.1_Missense_Mutation_p.R367C	NM_001182	NP_001173	P49419	AL7A1_HUMAN	aldehyde dehydrogenase 7 family, member A1	404					cellular aldehyde metabolic process|lysine catabolic process|sensory perception of sound	cytosol|mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity|betaine-aldehyde dehydrogenase activity|L-aminoadipate-semialdehyde dehydrogenase activity			kidney(2)|ovary(1)	3		all_cancers(142;0.24)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0417)|OV - Ovarian serous cystadenocarcinoma(64;0.068)|all cancers(49;0.109)	NADH(DB00157)|Pyridoxine(DB00165)	TTTCCAGGGCGATCCATAACC	0.398													13	13					0	0	0.003163	0	0
IL4	3565	broad.mit.edu	37	5	132018273	132018273	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:132018273G>A	uc003kxk.1	+	4	826	c.456G>A	c.(454-456)TCG>TCA	p.S152S	IL4_uc003kxl.1_Silent_p.S136S	NM_000589	NP_000580	P05112	IL4_HUMAN	interleukin 4 isoform 1 precursor	152					B cell differentiation|cellular defense response|chemotaxis|cholesterol metabolic process|connective tissue growth factor biosynthetic process|negative regulation of apoptosis|negative regulation of osteoclast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of interleukin-13 production|positive regulation of isotype switching to IgE isotypes|positive regulation of isotype switching to IgG isotypes|positive regulation of MHC class II biosynthetic process|positive regulation of T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|T-helper 2 cell cytokine production	extracellular space	cytokine activity|growth factor activity|interleukin-4 receptor binding				0		all_cancers(142;2.81e-05)|all_lung(232;1.47e-05)|Lung NSC(810;2.31e-05)|all_neural(839;0.0459)|Ovarian(839;0.0481)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	GBM - Glioblastoma multiforme(465;0.00245)		CAAAGTGTTCGAGCTGAATAT	0.294													16	18					0	0	0.004990	0	0
AFF4	27125	broad.mit.edu	37	5	132232341	132232341	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:132232341G>A	uc003kyd.2	-	11	2389	c.1981C>T	c.(1981-1983)CCT>TCT	p.P661S	AFF4_uc011cxk.1_Missense_Mutation_p.P339S|AFF4_uc003kye.1_Missense_Mutation_p.P661S	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	661					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGTGAGGAAGGAGGAAGGCTC	0.418													40	37					0	0	0.008740	0	0
SEC24A	10802	broad.mit.edu	37	5	134010889	134010889	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:134010889A>T	uc003kzs.2	+	6	1421	c.1133A>T	c.(1132-1134)AAA>ATA	p.K378I	SEC24A_uc011cxu.1_Missense_Mutation_p.K142I	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	378					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GACATCCAGAAACTCAACTGT	0.423													22	26					0	0	0.008361	0	0
FBXL21	26223	broad.mit.edu	37	5	135276297	135276297	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:135276297T>C	uc010jec.1	+	4	630	c.609T>C	c.(607-609)AGT>AGC	p.S203S	FBXL21_uc003lbc.2_RNA	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21	203	LRR 2.				rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCAATAATAGTGACACTCTAA	0.318													21	28					0	0	0.003954	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139781650	139781650	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:139781650C>T	uc003lfs.1	+	1	222	c.98C>T	c.(97-99)CCG>CTG	p.P33L	ANKHD1_uc003lfq.1_Missense_Mutation_p.P33L|ANKHD1_uc003lfr.2_Missense_Mutation_p.P33L|uc003lfn.2_5'Flank|ANKHD1_uc003lfp.2_Missense_Mutation_p.P33L|ANKHD1_uc003lfo.2_Missense_Mutation_p.P33L|ANKHD1_uc010jfk.2_Missense_Mutation_p.P33L	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	33						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCCGCCTCCGCCGGGAGGG	0.597													8	8					0	0	0.008291	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176410	140176410	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140176410C>T	uc003lhd.2	+	1	1967	c.1861C>T	c.(1861-1863)CCG>TCG	p.P621S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.P621S|PCDHA2_uc011czy.1_Missense_Mutation_p.P621S	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	621	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCTCGCATCCCGTTCCGCGT	0.637													27	28					0	0	0.007291	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182346	140182346	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140182346C>T	uc003lhf.2	+	1	1564	c.1564C>T	c.(1564-1566)CCG>TCG	p.P522S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.P522S	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	522	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGCTGCAGCCGCTGGACCA	0.682													68	83					0	0	0.003610	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216051	140216051	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140216051G>A	uc003lhq.2	+	1	2083	c.2083G>A	c.(2083-2085)GAT>AAT	p.D695N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.D695N	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	695	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGAGCTGGTGGATGTCAACGT	0.637													41	48					0	0	0.009718	0	0
PCDHA10	56139	broad.mit.edu	37	5	140236230	140236230	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140236230G>A	uc003lhx.2	+	1	597	c.597G>A	c.(595-597)CTG>CTA	p.L199L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Silent_p.L199L|PCDHA10_uc011dad.1_Silent_p.L199L	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	199	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAAGCTGCTGGATCGTGAAG	0.398													35	50					0	0	0.005524	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476702	140476702	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140476702C>T	uc003lil.2	+	1	2466	c.2328C>T	c.(2326-2328)TTC>TTT	p.F776F	PCDHB2_uc003lim.1_Silent_p.F437F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	776	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCCAACTTCGTTGCTCAGG	0.507													45	65					0	0	0.003610	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482344	140482344	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140482344C>T	uc003lio.2	+	1	2111	c.2111C>T	c.(2110-2112)TCG>TTG	p.S704L	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	704	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCCTCTTTTCGGTGCTCCTG	0.692													84	121					0	0	0.003610	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515701	140515701	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140515701C>T	uc003liq.2	+	1	902	c.685C>T	c.(685-687)CGC>TGC	p.R229C		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	229	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACCACAATTCGCATTGTCGT	0.552													74	87					0	0	0.003610	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531002	140531002	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140531002C>T	uc003lir.2	+	1	1164	c.1164C>T	c.(1162-1164)CCC>CCT	p.P388P	PCDHB6_uc011dah.1_Silent_p.P252P	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	388	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAATCTCCCCTTTCTACTAA	0.458													36	56					0	0	0.008740	0	0
PCDHB17	54661	broad.mit.edu	37	5	140536746	140536746	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140536746C>T	uc003lis.2	+	1	1167	c.1167C>T	c.(1165-1167)CTC>CTT	p.L389L		NR_001280				SubName: Full=Protocadherin-psi1;												0						AAGACCATCTCCCTTTCCTTC	0.453													8	7					0	0	0.003080	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553447	140553447	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140553447G>A	uc003lit.2	+	1	1205	c.1031G>A	c.(1030-1032)CGA>CAA	p.R344Q		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	344	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACGATAATCGACCCGAGCTG	0.458													16	32					0	0	0.004007	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553608	140553608	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140553608G>A	uc003lit.2	+	1	1366	c.1192G>A	c.(1192-1194)GAA>AAA	p.E398K		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	398	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCATCTGTCGAAAACTTCTA	0.493													28	32					0	0	0.005443	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558185	140558185	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140558185G>A	uc011dai.1	+	1	756	c.570G>A	c.(568-570)AGG>AGA	p.R190R	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	190	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTGATGGCAGGAAATACCCAG	0.502													14	117					0	0	0.003163	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558497	140558497	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140558497G>A	uc011dai.1	+	1	1068	c.882G>A	c.(880-882)AAG>AAA	p.K294K	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	294	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAACTTTTAAGGTCGATTTCT	0.413													58	310					0	0	0.003610	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572553	140572553	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140572553C>T	uc003lix.2	+	1	602	c.428C>T	c.(427-429)TCA>TTA	p.S143L		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	143	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTAAAAATATCAGAAAATACA	0.433													29	49					0	0	0.009535	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754840	140754840	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140754840C>A	uc003ljy.1	+	1	1190	c.1190C>A	c.(1189-1191)TCA>TAA	p.S397*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Nonsense_Mutation_p.S397*	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	397	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGGAAAAATCAGTTGGCAAT	0.453													33	36					2.42023e-17	3.84634e-17	0.003271	1	0
PCDHGA6	56109	broad.mit.edu	37	5	140755352	140755352	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140755352C>T	uc003ljy.1	+	1	1702	c.1702C>T	c.(1702-1704)CCC>TCC	p.P568S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.P568S	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	568	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCGCCCTCCCCACAGACGG	0.657													66	93					0	0	0.003610	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140810340	140810340	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:140810340G>A	uc003lkt.1	+	1	183	c.14G>A	c.(13-15)CGA>CAA	p.R5Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Missense_Mutation_p.R5Q	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	5					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCCTGCGCGACTGCACCGG	0.517													36	42					0	0	0.004878	0	0
PCDH1	5097	broad.mit.edu	37	5	141248533	141248533	+	Silent	SNP	G	A	A	rs145624062		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:141248533G>A	uc003llq.2	-	2	621	c.504C>T	c.(502-504)TTC>TTT	p.F168F	PCDH1_uc003llp.2_Silent_p.F168F|PCDH1_uc011dbf.1_Silent_p.F146F	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	168	Extracellular (Potential).|Cadherin 1.				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		CTGGTGAGGCGAAGTTGGGTG	0.552													73	97					0	0	0.003610	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147027972	147027972	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:147027972C>T	uc003loq.1	-	5	1285	c.903G>A	c.(901-903)AGG>AGA	p.R301R	JAKMIP2_uc011dbx.1_Silent_p.R259R|JAKMIP2_uc003lor.1_Silent_p.R301R|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Silent_p.R301R	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	301	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAAGGTATTCCTGTCTTCTA	0.303													45	58					0	0	0.003610	0	0
SPINK5	11005	broad.mit.edu	37	5	147469114	147469114	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:147469114G>A	uc003lox.2	+	7	605	c.532G>A	c.(532-534)GAA>AAA	p.E178K	SPINK5_uc010jgq.1_RNA|SPINK5_uc010jgs.1_Missense_Mutation_p.E150K|SPINK5_uc010jgr.2_Missense_Mutation_p.E159K|SPINK5_uc003low.2_Missense_Mutation_p.E178K|SPINK5_uc003loy.2_Missense_Mutation_p.E178K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	178	Kazal-like 3.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGCACAAGGGAAAATGATCC	0.448													33	52					0	0	0.003271	0	0
HTR4	3360	broad.mit.edu	37	5	147830769	147830769	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:147830769T>C	uc003lpj.1	-	7	1307	c.1143A>G	c.(1141-1143)GAA>GAG	p.E381E	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_3'UTR	NM_001040169	NP_001035259	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform a	Error:Variant_position_missing_in_Q13639_after_alignment					G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	ATTCCAGGGATTCTGGGTCAT	0.463													121	141					0	0	0.003610	0	0
CSF1R	1436	broad.mit.edu	37	5	149457749	149457749	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:149457749C>G	uc003lrl.2	-	4	850	c.655G>C	c.(655-657)GCT>CCT	p.A219P	CSF1R_uc011dcd.1_Missense_Mutation_p.A71P|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.A219P|CSF1R_uc011dce.1_Missense_Mutation_p.A219P|CSF1R_uc011dcf.1_Missense_Mutation_p.A219P	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	219	Extracellular (Potential).|Ig-like C2-type 3.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	ATCTGGGCAGCCTCCCCTCGA	0.592													38	41					0	0	0.003755	0	0
CSF1R	1436	broad.mit.edu	37	5	149457753	149457753	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:149457753C>T	uc003lrl.2	-	4	846	c.651G>A	c.(649-651)GGG>GGA	p.G217G	CSF1R_uc011dcd.1_Silent_p.G69G|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.G217G|CSF1R_uc011dce.1_Silent_p.G217G|CSF1R_uc011dcf.1_Silent_p.G217G	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	217	Extracellular (Potential).|Ig-like C2-type 3.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	GGGCAGCCTCCCCTCGAATCC	0.592													37	38					0	0	0.003755	0	0
NDST1	3340	broad.mit.edu	37	5	149929308	149929308	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:149929308C>T	uc003lsk.3	+	13	2887	c.2385C>T	c.(2383-2385)TTC>TTT	p.F795F	NDST1_uc011dcj.1_Silent_p.F738F	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	795	Heparan sulfate N-sulfotransferase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCAGAAGTTCCTTGGGGTGA	0.512													20	21					0	0	0.003330	0	0
FAT2	2196	broad.mit.edu	37	5	150920164	150920164	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:150920164G>A	uc003lue.3	-	10	9016	c.9003C>T	c.(9001-9003)GTC>GTT	p.V3001V	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3001	Extracellular (Potential).|Cadherin 26.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGACGTCCAGGACAAAGATCT	0.483													10	12					0	0	0.000978	0	0
FAT2	2196	broad.mit.edu	37	5	150923472	150923472	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:150923472G>A	uc003lue.3	-	9	7229	c.7216C>T	c.(7216-7218)CCT>TCT	p.P2406S	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2406	Extracellular (Potential).|Cadherin 21.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGCTGTCAGGGTCAATAGCC	0.478													23	35					0	0	0.002780	0	0
FAT2	2196	broad.mit.edu	37	5	150929031	150929031	+	Silent	SNP	G	A	A	rs145042858		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:150929031G>A	uc003lue.3	-	8	4627	c.4614C>T	c.(4612-4614)TTC>TTT	p.F1538F	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1538	Extracellular (Potential).|Cadherin 13.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCACCCACACGAAGTTCCTCT	0.537													16	25					0	0	0.004990	0	0
GRIA1	2890	broad.mit.edu	37	5	153030056	153030056	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:153030056C>T	uc003lva.3	+	4	992	c.627C>T	c.(625-627)CTC>CTT	p.L209L	GRIA1_uc003luy.3_Silent_p.L209L|GRIA1_uc003luz.3_Silent_p.L114L|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.L129L|GRIA1_uc011dcx.1_Silent_p.L140L|GRIA1_uc011dcy.1_Silent_p.L219L|GRIA1_uc011dcz.1_Silent_p.L219L|GRIA1_uc010jia.1_Silent_p.L189L	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	209	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CAGAACGCCTCAATGCTATCT	0.517													14	31					0	0	0.003163	0	0
GRIA1	2890	broad.mit.edu	37	5	153190778	153190778	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:153190778G>A	uc003lva.3	+	16	3079	c.2714G>A	c.(2713-2715)GGA>GAA	p.G905E	GRIA1_uc003luy.3_Missense_Mutation_p.G905E|GRIA1_uc003luz.3_Missense_Mutation_p.G810E|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.G825E|GRIA1_uc011dcx.1_Missense_Mutation_p.G836E|GRIA1_uc011dcy.1_Missense_Mutation_p.G915E|GRIA1_uc011dcz.1_Missense_Mutation_p.G915E	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	905	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGAGCCACGGGATTGTAACTG	0.557													13	8					0	0	0.002450	0	0
PPP1R2P3	153743	broad.mit.edu	37	5	156277799	156277799	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:156277799C>T	uc003lwf.1	+	1	251	c.226C>T	c.(226-228)CAT>TAT	p.H76Y		NR_002168				RecName: Full=Putative protein phosphatase inhibitor 2-like protein 3; AltName: Full=Protein phosphatase 1, regulatory subunit 2 pseudogene 3;												0						CCCTCCTTACCATAGTATGAT	0.463													9	7					0	0	0.004482	0	0
HAVCR2	84868	broad.mit.edu	37	5	156533826	156533826	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:156533826C>T	uc003lwk.1	-	2	350	c.206G>A	c.(205-207)AGG>AAG	p.R69K	HAVCR2_uc003lwl.2_Missense_Mutation_p.R69K	NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	69	Ig-like V-type.|Extracellular (Potential).					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTCATCAGTCCTGAGCACCAC	0.537													302	316					0	0	0.003610	0	0
FAM71B	153745	broad.mit.edu	37	5	156592907	156592907	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:156592907T>C	uc003lwn.2	-	1	373	c.273A>G	c.(271-273)CAA>CAG	p.Q91Q		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	91						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTTTAGTTGGTTGGGCCAGAA	0.567													268	292					0	0	0.003610	0	0
ADAM19	8728	broad.mit.edu	37	5	156932732	156932732	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:156932732C>T	uc003lwz.2	-	11	1139	c.1075G>A	c.(1075-1077)GAT>AAT	p.D359N	ADAM19_uc003lww.1_Missense_Mutation_p.D92N|ADAM19_uc003lwy.2_5'Flank|ADAM19_uc011ddr.1_Missense_Mutation_p.D290N	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	359	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAGCAGCAATCTGCAGAATCA	0.602													10	15					0	0	0.008291	0	0
GABRA6	2559	broad.mit.edu	37	5	161115987	161115987	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:161115987C>T	uc003lyu.2	+	4	596	c.258C>T	c.(256-258)ACC>ACT	p.T86T	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	86	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TCCGCCAGACCTGGACTGATG	0.403										TCGA Ovarian(5;0.080)			30	57					0	0	0.008740	0	0
ODZ2	57451	broad.mit.edu	37	5	167617455	167617455	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:167617455G>A	uc010jjd.2	+	14	2656	c.2656G>A	c.(2656-2658)GAT>AAT	p.D886N	ODZ2_uc003lzr.3_Missense_Mutation_p.D663N|ODZ2_uc003lzt.3_Missense_Mutation_p.D259N|ODZ2_uc010jje.2_Missense_Mutation_p.D157N|uc003lzs.1_5'Flank	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GGGCCAGACGGATTGGCCCGC	0.572													11	11					0	0	0.002450	0	0
ODZ2	57451	broad.mit.edu	37	5	167689721	167689721	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:167689721G>A	uc010jjd.2	+	29	8204	c.8204G>A	c.(8203-8205)GGA>GAA	p.G2735E	ODZ2_uc003lzr.3_Missense_Mutation_p.G2505E|ODZ2_uc003lzt.3_Missense_Mutation_p.G2108E|ODZ2_uc010jje.2_Missense_Mutation_p.G1999E	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GGGTACGAGGGATATTACGTG	0.552													5	8					0	0	0.000602	0	0
SLIT3	6586	broad.mit.edu	37	5	168098390	168098390	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:168098390C>T	uc003mab.2	-	34	4360	c.3940G>A	c.(3940-3942)GAG>AAG	p.E1314K	SLIT3_uc010jjg.2_Missense_Mutation_p.E1321K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1314	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCTGCAGCTCGTTGTTGATG	0.662													12	14					0	0	0.003163	0	0
DOCK2	1794	broad.mit.edu	37	5	169081436	169081436	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:169081436C>T	uc003maf.2	+	2	153	c.73C>T	c.(73-75)CCC>TCC	p.P25S	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	25	SH3.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAGCGGAGCCCCCCAGCTCTC	0.557													22	27					0	0	0.003954	0	0
KCNIP1	30820	broad.mit.edu	37	5	169780940	169780940	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:169780940T>C	uc003map.2	+	1	60	c.60T>C	c.(58-60)TTT>TTC	p.F20F		NM_001034838	NP_001030010	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 3	Error:Variant_position_missing_in_Q9NZI2_after_alignment					detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGACCATCTTTAAGCTCATCA	0.552													4	30					0	0	0.009096	0	0
BOD1	91272	broad.mit.edu	37	5	173040185	173040185	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:173040185G>A	uc003mcq.2	-	2	538	c.311C>T	c.(310-312)CCT>CTT	p.P104L	BOD1_uc003mcr.2_Missense_Mutation_p.P104L	NM_138369	NP_612378	Q96IK1	BOD1_HUMAN	biorientation of chromosomes in cell division 1	104					cell division|mitosis	condensed chromosome kinetochore|microtubule organizing center				ovary(2)	2						GTTCATCGTAGGATTCCATTC	0.413													66	67					0	0	0.003610	0	0
DRD1	1812	broad.mit.edu	37	5	174869875	174869875	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:174869875C>T	uc003mcz.2	-	2	1173	c.228G>A	c.(226-228)CTG>CTA	p.L76L		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	76	Helical; Name=2; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding	p.L76M(1)		ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	AGGGCATGACCAGGACGGCCA	0.552													15	19					0	0	0.002450	0	0
CDHR2	54825	broad.mit.edu	37	5	176016107	176016107	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:176016107G>C	uc003mem.1	+	22	2998	c.2932G>C	c.(2932-2934)GGG>CGG	p.G978R	CDHR2_uc003men.1_Missense_Mutation_p.G978R	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	978	Extracellular (Potential).|Cadherin 9.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CTCTAAGGACGGGGCCACCAT	0.577													54	118					0	0	0.003610	0	0
GPRIN1	114787	broad.mit.edu	37	5	176024822	176024822	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:176024822G>A	uc003meo.1	-	2	2189	c.2014C>T	c.(2014-2016)CCT>TCT	p.P672S		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	672						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGGATCCAGGATCCACCTTC	0.587													14	18					0	0	0.001855	0	0
GPRIN1	114787	broad.mit.edu	37	5	176025208	176025208	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:176025208G>A	uc003meo.1	-	2	1803	c.1628C>T	c.(1627-1629)GCC>GTC	p.A543V		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	543						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAGGGGCTCGGCCTTCCCTGA	0.637													16	27					0	0	0.006122	0	0
EIF4E1B	253314	broad.mit.edu	37	5	176072429	176072429	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:176072429G>A	uc010jkf.1	+	8	1110	c.526G>A	c.(526-528)GGG>AGG	p.G176R	TSPAN17_uc003mes.3_5'Flank|TSPAN17_uc003met.2_5'Flank|TSPAN17_uc003meu.2_5'Flank|TSPAN17_uc003mev.2_5'Flank|TSPAN17_uc003mew.2_5'Flank	NM_001099408	NP_001092878	A6NMX2	I4E1B_HUMAN	eukaryotic translation initiation factor 4E	176					regulation of translation	cytoplasm|mRNA cap binding complex	translation initiation factor activity				0	all_cancers(89;0.00185)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGAGGTATGTGGGGCCGTCGT	0.617													19	18					0	0	0.010504	0	0
HK3	3101	broad.mit.edu	37	5	176314234	176314234	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:176314234G>A	uc003mfa.2	-	12	1797	c.1705C>T	c.(1705-1707)CCC>TCC	p.P569S	HK3_uc003mez.2_Missense_Mutation_p.P125S	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	569	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACAGTCTCGGGAATGGAGTAG	0.617													8	27					0	0	0.003080	0	0
NSD1	64324	broad.mit.edu	37	5	176638709	176638709	+	Silent	SNP	C	T	T	rs142096976		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:176638709C>T	uc003mfr.3	+	5	3447	c.3309C>T	c.(3307-3309)GAC>GAT	p.D1103D	NSD1_uc003mft.3_Silent_p.D834D|NSD1_uc003mfs.1_Silent_p.D1000D|NSD1_uc011dfx.1_Silent_p.D751D	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1103					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		AAGATGGTGACCATTTTTCTG	0.443			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			32	31					0	0	0.009535	0	0
ZNF454	285676	broad.mit.edu	37	5	178392474	178392474	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:178392474G>A	uc003mjo.1	+	5	1340	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	ZNF454_uc010jkz.1_Missense_Mutation_p.E357K	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	357	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		GAAACCCTTTGAATGTAATGA	0.393													18	15					0	0	0.004990	0	0
GRM6	2916	broad.mit.edu	37	5	178410150	178410150	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:178410150C>T	uc003mjr.2	-	9	2376	c.2197G>A	c.(2197-2199)GTG>ATG	p.V733M	GRM6_uc003mjq.2_Missense_Mutation_p.V136M	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	733	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		TCGGGGTCCACCGTCCGCTGT	0.627													25	11					0	0	0.006320	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178634556	178634556	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:178634556C>T	uc003mjw.2	-	4	849	c.849G>A	c.(847-849)GGG>GGA	p.G283G	ADAMTS2_uc011dgm.1_Silent_p.G283G	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	283	Peptidase M12B.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CGTGCTCCTTCCCGTGGAACT	0.632													57	44					0	0	0.003610	0	0
CNOT6	57472	broad.mit.edu	37	5	179996264	179996264	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:179996264C>T	uc003mlx.2	+	10	1531	c.1182C>T	c.(1180-1182)CTC>CTT	p.L394L	CNOT6_uc010jld.2_Silent_p.L394L|CNOT6_uc010jle.2_Silent_p.L389L	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	394					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		CTCGCAACCTCAAATCCAGTG	0.378													55	63					0	0	0.003610	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166214	180166214	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr5:180166214G>A	uc003mmf.1	-	1	845	c.845C>T	c.(844-846)CCC>CTC	p.P282L		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ATTGAGAATGGGGGTAATTAT	0.428													68	91					0	0	0.003610	0	0
C6orf195	154386	broad.mit.edu	37	6	2623697	2623697	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:2623697C>T	uc003mtw.2	-	3	1345	c.360G>A	c.(358-360)AGG>AGA	p.R120R		NM_152554	NP_689767	Q96MT4	CF195_HUMAN	hypothetical protein LOC154386	120											0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				TGCTAATCTCCCTCTGACGGA	0.488													17	43					0	0	0.007413	0	0
FAM50B	26240	broad.mit.edu	37	6	3850681	3850681	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:3850681C>T	uc003mvu.2	+	2	748	c.636C>T	c.(634-636)TTC>TTT	p.F212F		NM_012135	NP_036267	Q9Y247	FA50B_HUMAN	family with sequence similarity 50, member B	212						nucleus				pancreas(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TGCAGCAGTTCCTGAAGAAGG	0.652													18	44					0	0	0.007413	0	0
RREB1	6239	broad.mit.edu	37	6	7247268	7247268	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:7247268C>T	uc003mxc.2	+	11	4810	c.4420C>T	c.(4420-4422)CCC>TCC	p.P1474S	RREB1_uc003mxb.2_Missense_Mutation_p.P1529S|RREB1_uc010jnx.2_Intron	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	1474					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				GACGGAGGGCCCCTCCGACGG	0.677													11	11					0	0	0.008291	0	0
DSP	1832	broad.mit.edu	37	6	7583110	7583110	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:7583110C>T	uc003mxp.1	+	24	5894	c.5615C>T	c.(5614-5616)TCC>TTC	p.S1872F	DSP_uc003mxq.1_Missense_Mutation_p.S1273F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1872	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACTCAATATTCCCGCAAGGAG	0.453													40	57					0	0	0.005524	0	0
DSP	1832	broad.mit.edu	37	6	7585490	7585490	+	Silent	SNP	G	A	A	rs35379048	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:7585490G>A	uc003mxp.1	+	24	8274	c.7995G>A	c.(7993-7995)ACG>ACA	p.T2665T	DSP_uc003mxq.1_Silent_p.T2066T	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2665	Globular 2.|Plectin 15.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACCCAACCACGGGCCAGAAGC	0.577													57	104					0	0	0.003610	0	0
SYCP2L	221711	broad.mit.edu	37	6	10898272	10898272	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:10898272G>A	uc003mzo.2	+	5	661	c.365G>A	c.(364-366)GGA>GAA	p.G122E	SYCP2L_uc011din.1_5'UTR|SYCP2L_uc010jow.2_5'UTR	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	122						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			AGAACAACAGGAATTCTGACC	0.418													20	60					0	0	0.002299	0	0
GFOD1	54438	broad.mit.edu	37	6	13365137	13365137	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:13365137G>A	uc003nat.1	-	2	1676	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	GFOD1_uc003nas.1_Silent_p.F234F	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	337						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			GGCAGTCGTCGAAGGTGGCGG	0.657													19	39					0	0	0.002299	0	0
RANBP9	10048	broad.mit.edu	37	6	13697093	13697093	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:13697093G>A	uc003nbb.2	-	2	666	c.607C>T	c.(607-609)CGA>TGA	p.R203*	RANBP9_uc003nba.2_5'UTR	NM_005493	NP_005484	Q96S59	RANB9_HUMAN	RAN binding protein 9	203	B30.2/SPRY.				axon guidance|microtubule nucleation|protein complex assembly	cytosol|microtubule associated complex|nucleus	Ran GTPase binding			lung(1)|skin(1)	2	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.223)			TGCGTGGCTCGAACTGACGCG	0.393													41	130					0	0	0.003610	0	0
SOX4	6659	broad.mit.edu	37	6	21595725	21595725	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:21595725C>T	uc003ndi.2	+	1	1754	c.960C>T	c.(958-960)GAC>GAT	p.D320D		NM_003107	NP_003098	Q06945	SOX4_HUMAN	SRY (sex determining region Y)-box 4	320					canonical Wnt receptor signaling pathway|cardiac ventricle formation|cellular response to glucose stimulus|DNA damage response, detection of DNA damage|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|glial cell development|glial cell proliferation|limb bud formation|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein export from nucleus|negative regulation of protein ubiquitination|neural tube formation|neuroepithelial cell differentiation|noradrenergic neuron differentiation|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|positive regulation of insulin secretion|positive regulation of N-terminal peptidyl-lysine acetylation|positive regulation of translation|pro-B cell differentiation|protein stabilization|skeletal system development|spinal cord motor neuron differentiation|sympathetic nervous system development|T cell differentiation	mitochondrion|nucleus	core promoter sequence-specific DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity				0	Ovarian(93;0.163)		all cancers(50;0.0751)|Epithelial(50;0.155)			ACCCCAGCGACCCCCTGGGCC	0.776													5	10					0	0	0.001168	0	0
MRS2	57380	broad.mit.edu	37	6	24423845	24423845	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:24423845G>A	uc003neb.2	+	11	1377	c.1255G>A	c.(1255-1257)GAT>AAT	p.D419N	MRS2_uc011djl.1_Missense_Mutation_p.D422N|MRS2_uc011djm.1_RNA|MRS2_uc011djn.1_Missense_Mutation_p.D369N|MRS2_uc003nec.2_Missense_Mutation_p.D296N	NM_020662	NP_065713	Q9HD23	MRS2_HUMAN	MRS2-like, magnesium homeostasis factor	419	Mitochondrial matrix (Potential).				ion transport	integral to membrane|mitochondrial inner membrane					0						TCTTCTGGCAGATAGAAGCAT	0.373													13	34					0	0	0.004007	0	0
SLC17A3	10786	broad.mit.edu	37	6	25849679	25849679	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:25849679G>A	uc003nfi.3	-	10	1161	c.1051C>T	c.(1051-1053)CTC>TTC	p.L351F	SLC17A3_uc003nfk.3_Missense_Mutation_p.L429F	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	351					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						GCTCCCATGAGAAAACTGGAA	0.428													18	27					0	0	0.002780	0	0
BTN3A3	10384	broad.mit.edu	37	6	26452373	26452373	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:26452373C>T	uc003nhz.2	+	11	1669	c.1489C>T	c.(1489-1491)CCT>TCT	p.P497S	BTN3A3_uc003nia.2_Missense_Mutation_p.P455S|BTN3A3_uc011dkn.1_Missense_Mutation_p.P448S	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	497	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane					0						GCCTCTATATCCTGTTTTCAG	0.478													51	106					0	0	0.003610	0	0
ZKSCAN3	80317	broad.mit.edu	37	6	28327526	28327526	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:28327526C>T	uc003nle.3	+	2	379	c.163C>T	c.(163-165)CCG>TCG	p.P55S	ZKSCAN3_uc010jrc.2_Missense_Mutation_p.P55S|ZKSCAN3_uc003nlf.3_Intron	NM_024493	NP_077819	Q9BRR0	ZKSC3_HUMAN	zinc finger with KRAB and SCAN domains 3	55	SCAN box.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	chromatin binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						CTTCCGCTACCCGGAGGCTGC	0.637													36	84					0	0	0.004289	0	0
GPX6	257202	broad.mit.edu	37	6	28472176	28472176	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:28472176G>A	uc011dlj.1	-	6	609	c.559C>T	c.(559-561)CTG>TTG	p.L187L	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	187					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	GGCCCCACCAGAAATTTCTCA	0.522													31	77					0	0	0.002445	0	0
SCAND3	114821	broad.mit.edu	37	6	28540746	28540746	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:28540746C>T	uc003nlo.2	-	4	3538	c.2920G>A	c.(2920-2922)GCT>ACT	p.A974T		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	974					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						gtcattgaagctgcaccatca	0													70	50					0	0	0.003610	0	0
SCAND3	114821	broad.mit.edu	37	6	28541304	28541304	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:28541304T>C	uc003nlo.2	-	4	2980	c.2362A>G	c.(2362-2364)AGT>GGT	p.S788G		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	788					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ggttgtgaacttatttcttta	0													24	44					0	0	0.002780	0	0
OR5V1	81696	broad.mit.edu	37	6	29323340	29323340	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:29323340G>A	uc011dlo.1	-	1	715	c.633C>T	c.(631-633)TTC>TTT	p.F211F		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						CGATACAAAGGAAAGGAGTCC	0.478													35	76					0	0	0.005524	0	0
OR11A1	26531	broad.mit.edu	37	6	29394864	29394864	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:29394864G>A	uc003nmg.2	-	1	646	c.555C>T	c.(553-555)TTC>TTT	p.F185F		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCAGGCCCACGAAAAGCATAA	0.512													12	25					0	0	0.000978	0	0
OR2H1	26716	broad.mit.edu	37	6	29429826	29429827	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:29429826_29429827GG>AA	uc003nmi.2	+	3	723_724	c.280_281GG>AA	c.(280-282)GGA>AAA	p.G94K	OR2H1_uc003nmj.1_Missense_Mutation_p.G94K|OR2H1_uc010jri.1_Missense_Mutation_p.G16K	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGCTTCCTGGGATGCTCTGTC	0.569													32	72					0	0	0.004672	0	0
MAS1L	116511	broad.mit.edu	37	6	29455614	29455614	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:29455614C>T	uc011dlq.1	-	1	66	c.66G>A	c.(64-66)CAG>CAA	p.Q22Q		NM_052967	NP_443199	P35410	MAS1L_HUMAN	MAS1 oncogene-like	22	Extracellular (Potential).					cytoplasm|integral to membrane|nucleus|plasma membrane	G-protein coupled receptor activity			ovary(7)|lung(2)	9						AGAGAGATATCTGTGACTCAG	0.522													45	18					0	0	0.003610	0	0
TRIM31	11074	broad.mit.edu	37	6	30075858	30075858	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:30075858G>A	uc003npg.1	-	6	965	c.855C>T	c.(853-855)TCC>TCT	p.S285S	TRIM31_uc003npi.3_RNA	NM_007028	NP_008959	Q9BZY9	TRI31_HUMAN	tripartite motif protein 31	285	Potential.					mitochondrion	ligase activity|zinc ion binding			lung(1)	1						TCCCTGTGATGGAGTCATGTC	0.428													9	52					0	0	0.004007	0	0
KIAA1949	170954	broad.mit.edu	37	6	30652369	30652369	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:30652369G>A	uc003nra.2	-	2	1658	c.1427C>T	c.(1426-1428)CCC>CTC	p.P476L	KIAA1949_uc003nrb.3_Missense_Mutation_p.P476L	NM_001134870	NP_001128342	Q6NYC8	PHTNS_HUMAN	phostensin	476						cytoplasm|cytoskeleton	actin binding				0						AGACCGCCGGGGGTTGACGGT	0.672													11	6					0	0	0.001368	0	0
MDC1	9656	broad.mit.edu	37	6	30670992	30670992	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:30670992A>G	uc003nrg.3	-	12	6194	c.5754T>C	c.(5752-5754)GGT>GGC	p.G1918G	MDC1_uc003nrf.3_Silent_p.G549G	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1918	BRCT 1.|Required for nuclear localization (NLS2).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						CTGCCGCTGAACCAGCCAGAC	0.627								Other_conserved_DNA_damage_response_genes					15	45					0	0	0.002450	0	0
POU5F1	5460	broad.mit.edu	37	6	31138094	31138094	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:31138094C>T	uc003nsv.2	-	1	358	c.304G>A	c.(304-306)GGG>AGG	p.G102R	uc011dng.1_RNA	NM_002701	NP_002692	Q01860	PO5F1_HUMAN	POU domain, class 5, transcription factor 1	102					anatomical structure morphogenesis|blastocyst development|BMP signaling pathway involved in heart induction|cardiac cell fate determination|cell fate commitment involved in formation of primary germ layers|mRNA transcription from RNA polymerase II promoter|negative regulation of gene silencing by miRNA|positive regulation of catenin import into nucleus|positive regulation of SMAD protein import into nucleus|positive regulation of transcription from RNA polymerase II promoter|regulation of asymmetric cell division|regulation of heart induction by regulation of canonical Wnt receptor signaling pathway|regulation of methylation-dependent chromatin silencing|response to wounding|somatic stem cell maintenance|somatic stem cell maintenance	cytosol|nucleoplasm|transcription factor complex	miRNA binding|sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|ubiquitin protein ligase binding		EWSR1/POU5F1(10)	skin(7)|salivary_gland(2)|bone(2)|lung(1)|ovary(1)	13						CTCTCCACCCCGACTCCTGCT	0.662			T	EWSR1	sarcoma								9	37					0	0	0.008291	0	0
TNXB	7148	broad.mit.edu	37	6	32015758	32015758	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32015758C>T	uc003nzl.2	-	30	10273	c.10071G>A	c.(10069-10071)GGG>GGA	p.G3357G	TNXB_uc003nzg.1_5'Flank|TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3404	Fibronectin type-III 26.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CAGTCAGCTCCCCCAGGCGGG	0.622													119	284					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32015760	32015760	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32015760C>T	uc003nzl.2	-	30	10271	c.10069G>A	c.(10069-10071)GGG>AGG	p.G3357R	TNXB_uc003nzg.1_5'Flank|TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3404	Fibronectin type-III 26.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTCAGCTCCCCCAGGCGGGGA	0.612													128	267					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32021304	32021304	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32021304C>T	uc003nzl.2	-	25	8848	c.8646G>A	c.(8644-8646)CAG>CAA	p.Q2882Q		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2931	Fibronectin type-III 21.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCACCTTGGGCTGCCCATCCC	0.632													208	477					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32053851	32053851	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32053851G>A	uc003nzl.2	-	7	3026	c.2824C>T	c.(2824-2826)CCC>TCC	p.P942S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGGCCTGAGGGAGGAGGCTCA	0.627													57	123					0	0	0.003610	0	0
NOTCH4	4855	broad.mit.edu	37	6	32169986	32169987	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32169986_32169987GG>AA	uc003obb.2	-	21	3760_3761	c.3621_3622CC>TT	c.(3619-3624)GTCCCA>GTTTCA	p.P1208S	NOTCH4_uc003oba.2_5'UTR|NOTCH4_uc011dpu.1_Intron|NOTCH4_uc011dpv.1_Intron	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1208	LNR 1.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CAGGGGTCTGGGACTCCCAGAG	0.639													183	110					0	0	0.004672	0	0
HLA-DRB1	3123	broad.mit.edu	37	6	32549447	32549447	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32549447C>T	uc003obp.3	-	3	582	c.539G>A	c.(538-540)GGA>GAA	p.G180E	HLA-DRB1_uc011dqa.1_Missense_Mutation_p.G10E|HLA-DRB5_uc003obk.3_Intron|HLA-DRB6_uc003obo.1_Intron|uc010jub.1_5'Flank|HLA-DRB1_uc011dqb.1_Missense_Mutation_p.G10E|HLA-DRB1_uc011dqc.1_Missense_Mutation_p.G10E	NM_002124	NP_002115	P01911	2B1F_HUMAN	major histocompatibility complex, class II, DR	180	Ig-like C1-type.|Beta-2.|Extracellular (Potential).			NG -> D (in Ref. 9; AA sequence).	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex				skin(1)	1						GGTCCAGTCTCCATTCTGGAT	0.552									Rheumatoid_Arthritis|Sj_gren_syndrome	Multiple Myeloma(14;0.17)			11	112					0	0	0.008740	0	0
HLA-DQA1	3117	broad.mit.edu	37	6	32609835	32609835	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32609835C>T	uc003obr.2	+	3	471	c.418C>T	c.(418-420)CCT>TCT	p.P140S	HLA-DQA1_uc003obs.2_RNA|HLA-DQA1_uc003obt.1_Missense_Mutation_p.P140S|HLA-DQA1_uc003obu.2_5'Flank	NM_002122	NP_002113	P01909	DQA1_HUMAN	major histocompatibility complex, class II, DQ	139	Ig-like C1-type.|Alpha-2.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						CAACATCTTTCCTCCTGTGGT	0.498													11	30					0	0	0.007413	0	0
HLA-DQA1	3117	broad.mit.edu	37	6	32610394	32610394	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32610394G>A	uc003obr.2	+	4	674	c.621G>A	c.(619-621)GAG>GAA	p.E207E	HLA-DQA1_uc003obs.2_RNA|HLA-DQA1_uc003obt.1_3'UTR|HLA-DQA1_uc003obu.2_RNA	NM_002122	NP_002113	P01909	DQA1_HUMAN	major histocompatibility complex, class II, DQ	206	Connecting peptide.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						CAGAGCCTGAGATTCCAGCCC	0.547													8	28					0	0	0.001368	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32713654	32713654	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32713654C>T	uc003obx.2	+	3	476	c.418C>T	c.(418-420)CCT>TCT	p.P140S		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	140	Alpha-2.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CAACATCTTTCCTCCTGTGGT	0.502													11	170					0	0	0.003163	0	0
TAP2	6891	broad.mit.edu	37	6	32782215	32782215	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32782215C>T	uc011dqf.1	-	14	2468	c.2346G>A	c.(2344-2346)AGG>AGA	p.R782R	HLA-DOB_uc003oca.2_Silent_p.R175R|HLA-DOB_uc011dqg.1_Silent_p.R175R	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	Error:Variant_position_missing_in_Q03519_after_alignment					antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						AGTCTCCATTCCTGATAGGGC	0.527													39	100					0	0	0.009718	0	0
HLA-DMB	3109	broad.mit.edu	37	6	32905036	32905036	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32905036G>A	uc003ocl.1	-	3	768	c.535C>T	c.(535-537)CAT>TAT	p.H179Y	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_5'Flank|HLA-DMB_uc010jud.1_Missense_Mutation_p.H48Y|HLA-DMB_uc010jue.1_Missense_Mutation_p.H48Y|HLA-DMB_uc010juf.1_Missense_Mutation_p.H48Y|HLA-DMB_uc011dql.1_Missense_Mutation_p.H179Y	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	179	Lumenal (Potential).|Ig-like C1-type.|Beta-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						AAGGCTAAATGGGAGAGGGTC	0.562													31	50					0	0	0.009535	0	0
RXRB	6257	broad.mit.edu	37	6	33167028	33167028	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:33167028G>A	uc003odb.2	-	2	580	c.401C>T	c.(400-402)CCA>CTA	p.P134L	RXRB_uc003odc.2_Missense_Mutation_p.P134L|RXRB_uc003odd.2_Intron|RXRB_uc011dqr.1_Intron|RXRB_uc011dqs.1_Intron|RXRB_uc003ode.1_5'Flank|RXRB_uc011dqt.1_Missense_Mutation_p.P134L|RXRB_uc011dqu.1_Intron|SLC39A7_uc003odf.2_5'Flank|SLC39A7_uc003odg.2_5'Flank|SLC39A7_uc011dqv.1_5'Flank	NM_021976	NP_068811	P28702	RXRB_HUMAN	retinoid X receptor, beta	134	Modulating (By similarity).|Pro-rich.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			ovary(3)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Bexarotene(DB00307)|Etretinate(DB00926)|Tazarotene(DB00799)|Tretinoin(DB00755)	ACTGATGACTGGAAAGGGAGA	0.667													3	7					0	0	0.004672	0	0
RPS18	6222	broad.mit.edu	37	6	33240417	33240417	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:33240417C>T	uc003odp.1	+	2	61	c.16C>T	c.(16-18)CCT>TCT	p.P6S	VPS52_uc003odm.1_5'Flank|VPS52_uc003odn.1_5'Flank|VPS52_uc003odo.1_5'Flank|VPS52_uc011dqy.1_5'Flank|VPS52_uc011dqz.1_5'Flank|RPS18_uc010jum.1_RNA|RPS18_uc003odq.1_RNA	NM_022551	NP_072045	P62269	RS18_HUMAN	ribosomal protein S18	6					endocrine pancreas development|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	rRNA binding|structural constituent of ribosome				0						TCTAGTGATCCCTGAAAAGTT	0.428													62	195					0	0	0.003610	0	0
TCP11	6954	broad.mit.edu	37	6	35087959	35087959	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:35087959G>A	uc003okd.2	-	8	1312	c.1131C>T	c.(1129-1131)TCC>TCT	p.S377S	TCP11_uc003ojz.1_Silent_p.S302S|TCP11_uc003oka.2_Silent_p.S302S|TCP11_uc003okb.2_Silent_p.S301S|TCP11_uc003okc.2_Silent_p.S301S|TCP11_uc011dsu.1_Silent_p.S359S|TCP11_uc011dsv.1_Silent_p.S326S|TCP11_uc011dsw.1_Silent_p.S331S	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	364					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						CTTCCAACAAGGATTTGGTTA	0.438													20	41					0	0	0.002780	0	0
MAPK14	1432	broad.mit.edu	37	6	36043686	36043686	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:36043686G>A	uc003olp.2	+	7	1038	c.557G>A	c.(556-558)AGG>AAG	p.R186K	MAPK14_uc011dth.1_Missense_Mutation_p.R186K|MAPK14_uc003olo.2_Missense_Mutation_p.R186K|MAPK14_uc003olq.2_Missense_Mutation_p.R186K|MAPK14_uc003olr.2_Missense_Mutation_p.R186K|MAPK14_uc011dti.1_Missense_Mutation_p.R109K	NM_001315	NP_001306	Q16539	MK14_HUMAN	mitogen-activated protein kinase 14 isoform 1	186	Protein kinase.				activation of MAPK activity|cellular component movement|cellular response to ionizing radiation|chemotaxis|innate immune response|mRNA metabolic process|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of muscle cell differentiation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|signal transduction in response to DNA damage|stress-activated MAPK cascade|stress-induced premature senescence|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|MAP kinase kinase activity|protein binding			ovary(2)|stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	6						GTGGCCACTAGGTGGTACAGG	0.463													26	66					0	0	0.002096	0	0
C6orf222	389384	broad.mit.edu	37	6	36291943	36291943	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:36291943G>A	uc003oly.2	-	7	1371	c.1193C>T	c.(1192-1194)TCC>TTC	p.S398F		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	398										skin(2)|ovary(1)|breast(1)	4						TTGGAGCATGGAAATGATCTT	0.483													61	126					0	0	0.003610	0	0
SFRS3	6428	broad.mit.edu	37	6	36566699	36566699	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:36566699C>T	uc003omj.2	+	3	451	c.280C>T	c.(280-282)CCC>TCC	p.P94S	SFRS3_uc003omk.2_RNA|SFRS3_uc011dtp.1_Missense_Mutation_p.P94S	NM_003017	NP_003008	P84103	SRSF3_HUMAN	splicing factor, arginine/serine-rich 3	94	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						TGGCCCACCTCCCTCTTGGGG	0.478			T	BCL6	follicular lymphoma								39	93					0	0	0.003610	0	0
FGD2	221472	broad.mit.edu	37	6	36982788	36982788	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:36982788G>A	uc010jwp.1	+	8	1174	c.1003G>A	c.(1003-1005)GAC>AAC	p.D335N	FGD2_uc003ong.2_Missense_Mutation_p.D57N|FGD2_uc011dtv.1_5'UTR|FGD2_uc003oni.1_Missense_Mutation_p.D141N	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	335	PH 1.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						CCGCCGCAACGACCCCATGGA	0.622													10	34					0	0	0.006214	0	0
FGD2	221472	broad.mit.edu	37	6	36993601	36993601	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:36993601G>A	uc010jwp.1	+	14	1663	c.1492G>A	c.(1492-1494)GAA>AAA	p.E498K	FGD2_uc003ong.2_Missense_Mutation_p.E220K|FGD2_uc011dtv.1_Missense_Mutation_p.E126K|FGD2_uc003onj.1_Missense_Mutation_p.E75K	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	498	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						CTACCGGGCCGAACTGAAATA	0.622													17	59					0	0	0.007413	0	0
TMEM217	221468	broad.mit.edu	37	6	37186253	37186253	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:37186253G>A	uc003onl.2	-	2	635	c.554C>T	c.(553-555)TCG>TTG	p.S185L	TMEM217_uc010jwr.2_Missense_Mutation_p.S185L|TMEM217_uc010jws.2_Intron|TMEM217_uc003onm.3_Missense_Mutation_p.S185L	NM_145316	NP_660359	Q8N7C4	TM217_HUMAN	transmembrane protein 217 isoform 1	185						integral to membrane					0						gaacccACTCGAAATTGATAA	0.199													26	51					0	0	0.005443	0	0
TMEM217	221468	broad.mit.edu	37	6	37186304	37186304	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:37186304C>T	uc003onl.2	-	2	584	c.503G>A	c.(502-504)CGA>CAA	p.R168Q	TMEM217_uc010jwr.2_Missense_Mutation_p.R168Q|TMEM217_uc010jws.2_Intron|TMEM217_uc003onm.3_Missense_Mutation_p.R168Q	NM_145316	NP_660359	Q8N7C4	TM217_HUMAN	transmembrane protein 217 isoform 1	168						integral to membrane					0						TGTAGAAATTCGTCTCTTGTA	0.313													47	112					0	0	0.003214	0	0
DNAH8	1769	broad.mit.edu	37	6	38791386	38791386	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:38791386C>T	uc003ooe.1	+	26	3718	c.3118C>T	c.(3118-3120)CTA>TTA	p.L1040L		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATCAGAAATTCTACACTATGC	0.299													27	69					0	0	0.007291	0	0
DNAH8	1769	broad.mit.edu	37	6	38820989	38820989	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:38820989C>T	uc003ooe.1	+	39	5548	c.4948C>T	c.(4948-4950)CCT>TCT	p.P1650S		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGCCAAAGGTCCTGTGGAGAT	0.313													25	56					0	0	0.008361	0	0
KCNK5	8645	broad.mit.edu	37	6	39162039	39162039	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:39162039G>A	uc003oon.2	-	4	904	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	180	Helical; (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						CCATGAATACGAAGGGTGGGA	0.572													18	57					0	0	0.001882	0	0
LRFN2	57497	broad.mit.edu	37	6	40400569	40400569	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:40400569G>A	uc003oph.1	-	2	749	c.284C>T	c.(283-285)TCC>TTC	p.S95F		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	95	LRR 2.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GTCCAGAAAGGAAAAGGGCTG	0.602													15	33					0	0	0.004007	0	0
USP49	25862	broad.mit.edu	37	6	41774027	41774027	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:41774027G>A	uc003ori.2	-	4	917	c.695C>T	c.(694-696)TCA>TTA	p.S232L		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	232					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CACTCTGCGTGAGGTAGGGAg	0.542													10	20					0	0	0.006214	0	0
TAF8	129685	broad.mit.edu	37	6	42036228	42036228	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:42036228C>T	uc003ors.2	+	7	692	c.663C>T	c.(661-663)ATC>ATT	p.I221I	TAF8_uc003ort.2_Silent_p.I221I|TAF8_uc003oru.1_Silent_p.I221I|TAF8_uc003orv.1_Silent_p.I221I|TAF8_uc011dun.1_Intron	NM_138572	NP_612639	Q7Z7C8	TAF8_HUMAN	TBP-associated factor 8	221					cell differentiation|maintenance of protein location in nucleus|positive regulation of transcription, DNA-dependent|regulation of fat cell differentiation|transcription, DNA-dependent	perinuclear region of cytoplasm|transcription factor TFIID complex	DNA binding|protein binding			ovary(1)	1	Colorectal(47;0.196)		STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00179)			CTTTCACCATCCCCTACCTGA	0.522													107	269					0	0	0.003610	0	0
PTK7	5754	broad.mit.edu	37	6	43111199	43111199	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:43111199C>T	uc003oub.1	+	14	2290	c.2092C>T	c.(2092-2094)CCC>TCC	p.P698S	PTK7_uc003ouc.1_Missense_Mutation_p.P642S|PTK7_uc003oud.1_Missense_Mutation_p.P658S|PTK7_uc003oue.1_Missense_Mutation_p.P568S|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.P706S|PTK7_uc010jyj.1_Intron	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	698	Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			CAGCCCTCCCCCCTACAAGAT	0.602											OREG0017450	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	79					0	0	0.009535	0	0
CUL9	23113	broad.mit.edu	37	6	43173928	43173928	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:43173928C>T	uc003ouk.2	+	25	5052	c.4977C>T	c.(4975-4977)TTC>TTT	p.F1659F	CUL9_uc003oul.2_Silent_p.F1659F|CUL9_uc010jyk.2_Silent_p.F811F	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	1659	Potential.				ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						ACAAGTTGTTCTTggagcagg	0.403													11	13					0	0	0.008291	0	0
CUL9	23113	broad.mit.edu	37	6	43184184	43184185	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:43184184_43184185CC>AT	uc003ouk.2	+	31	6300_6301	c.6225_6226CC>AT	c.(6223-6228)AGCCCC>AGATCC	p.2075_2076SP>RS	CUL9_uc003oul.2_Missense_Mutation_p.2047_2048SP>RS|CUL9_uc010jyk.2_Missense_Mutation_p.1227_1228SP>RS|CUL9_uc003oun.2_Intron	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	2075_2076	RING-type 1.				ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						TCTGTGTGAGCCCCCTGGGGTG	0.639													33	138					0	0	0.004672	0	0
TTBK1	84630	broad.mit.edu	37	6	43226840	43226840	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:43226840G>A	uc003ouq.1	+	11	1360	c.1081G>A	c.(1081-1083)GGA>AGA	p.G361R		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	361						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			TGTGCTACAGGGAGAGCACCT	0.677													21	49					0	0	0.003330	0	0
SLC22A7	10864	broad.mit.edu	37	6	43267729	43267729	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:43267729G>A	uc003out.2	+	5	851	c.752G>A	c.(751-753)GGG>GAG	p.G251E	SLC22A7_uc010jyl.1_Missense_Mutation_p.G252E|SLC22A7_uc003ous.2_Missense_Mutation_p.G249E	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	251	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			GCACTGGTTGGGTACCTGATA	0.647													35	90					0	0	0.005524	0	0
RUNX2	860	broad.mit.edu	37	6	45514563	45514563	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:45514563G>A	uc011dvx.1	+	9	1298	c.1088_splice	c.e9-1	p.G363_splice	RUNX2_uc011dvy.1_Splice_Site_p.G341_splice|RUNX2_uc003oxt.2_Splice_Site_p.G349_splice	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a						negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						ATAATTTTTAGGTGCTTCAGA	0.393													35	40					0	0	0.006999	0	0
TDRD6	221400	broad.mit.edu	37	6	46660568	46660568	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:46660568C>A	uc003oyj.2	+	1	4703	c.4703C>A	c.(4702-4704)CCT>CAT	p.P1568H	TDRD6_uc010jze.2_Missense_Mutation_p.P1562H	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1568	Tudor 7.				cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			ATCCCATGTCCTTATATTGGA	0.383													18	37					2.4624e-09	3.89889e-09	0.008871	1	0
MEP1A	4224	broad.mit.edu	37	6	46803057	46803057	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:46803057C>T	uc010jzh.1	+	13	1897	c.1855C>T	c.(1855-1857)CAA>TAA	p.Q619*	MEP1A_uc011dwg.1_Nonsense_Mutation_p.Q341*|MEP1A_uc011dwh.1_Nonsense_Mutation_p.Q647*|MEP1A_uc011dwi.1_Nonsense_Mutation_p.Q519*	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	619	Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			CCTCATTCTCCAAGGCCAGGA	0.552													8	3					0	0	0.003080	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47221100	47221100	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:47221100G>A	uc003oyv.2	-	4	1834	c.1401C>T	c.(1399-1401)ACC>ACT	p.T467T		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	467	Cytoplasmic (Potential).|Death.				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			GGCCCCGGATGGTCCAGTGCT	0.597													11	10					0	0	0.008291	0	0
GPR115	221393	broad.mit.edu	37	6	47682281	47682281	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:47682281G>A	uc003oza.1	+	6	1558	c.1300G>A	c.(1300-1302)GAG>AAG	p.E434K	GPR115_uc003oyz.1_Missense_Mutation_p.E491K|GPR115_uc003ozb.1_Missense_Mutation_p.E432K	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	434	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						GGTTGTGACGGAGATATCATA	0.483													49	73					0	0	0.003610	0	0
PKHD1	5314	broad.mit.edu	37	6	51524449	51524449	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:51524449G>A	uc003pah.1	-	61	10751	c.10475C>T	c.(10474-10476)TCC>TTC	p.S3492F		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3492	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GAGAAGCTTGGAGGTACTTTT	0.443													26	24					0	0	0.004656	0	0
EFHC1	114327	broad.mit.edu	37	6	52303121	52303121	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:52303121A>G	uc003pap.3	+	3	520	c.305A>G	c.(304-306)TAT>TGT	p.Y102C	EFHC1_uc011dwv.1_Missense_Mutation_p.Y11C|EFHC1_uc011dww.1_Missense_Mutation_p.Y83C	NM_018100	NP_060570	Q5JVL4	EFHC1_HUMAN	EF-hand domain (C-terminal) containing 1	102	DM10 1.					axoneme|neuronal cell body	calcium ion binding|protein C-terminus binding			ovary(2)|skin(1)	3	Lung NSC(77;0.109)					TTTGATGCCTATTTCCAAGAA	0.363													12	13					0	0	0.001368	0	0
GCLC	2729	broad.mit.edu	37	6	53373488	53373488	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:53373488G>A	uc003pbw.1	-	8	1238	c.850C>T	c.(850-852)CCC>TCC	p.P284S	GCLC_uc003pbv.1_Missense_Mutation_p.P8S	NM_001498	NP_001489	P48506	GSH1_HUMAN	glutamate-cysteine ligase, catalytic subunit	284					anti-apoptosis|cell redox homeostasis|cysteine metabolic process|glutamate metabolic process|glutathione biosynthetic process|negative regulation of transcription, DNA-dependent|regulation of blood vessel size|response to heat|response to hormone stimulus|response to oxidative stress|xenobiotic metabolic process	cytosol	ADP binding|ATP binding|coenzyme binding|glutamate binding|glutamate-cysteine ligase activity|magnesium ion binding			ovary(1)|central_nervous_system(1)	2	Lung NSC(77;0.0137)				L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	CGGTAAAAGGGAGATGCAGCA	0.443													39	31					0	0	0.008740	0	0
FAM83B	222584	broad.mit.edu	37	6	54791187	54791187	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:54791187G>A	uc003pck.2	+	3	579	c.463G>A	c.(463-465)GAT>AAT	p.D155N		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	155										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTTAGTGATGGATATATTTAC	0.308													23	34					0	0	0.006320	0	0
FAM83B	222584	broad.mit.edu	37	6	54805839	54805839	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:54805839G>A	uc003pck.2	+	5	2186	c.2070G>A	c.(2068-2070)AGG>AGA	p.R690R		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	690										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CACTTACCAGGAATCGAGTTA	0.383													34	35					0	0	0.003755	0	0
FAM83B	222584	broad.mit.edu	37	6	54805936	54805936	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:54805936G>A	uc003pck.2	+	5	2283	c.2167G>A	c.(2167-2169)GAA>AAA	p.E723K		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	723										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GGATGAGGAGGAAGTTACCAA	0.403													25	38					0	0	0.007291	0	0
HCRTR2	3062	broad.mit.edu	37	6	55147023	55147023	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:55147023G>A	uc003pcl.2	+	7	1421	c.1106G>A	c.(1105-1107)GGA>GAA	p.G369E	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	369	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TGTTTGCCAGGAAAATTTCGA	0.438													7	9					0	0	0.004482	0	0
BMP5	653	broad.mit.edu	37	6	55659080	55659080	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:55659080C>T	uc003pcq.2	-	3	1541	c.829G>A	c.(829-831)GAT>AAT	p.D277N	BMP5_uc011dxf.1_Missense_Mutation_p.D277N	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	277					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TGCTTACCATCCCCTGTTTCT	0.348													24	36					0	0	0.002299	0	0
EYS	346007	broad.mit.edu	37	6	66044932	66044932	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:66044932A>T	uc011dxu.1	-	11	2245	c.1707T>A	c.(1705-1707)GAT>GAA	p.D569E	EYS_uc003peq.2_Missense_Mutation_p.D569E|EYS_uc003per.1_Missense_Mutation_p.D569E	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	569	EGF-like 6.				response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						TTTCTTGATCATCAGTTGTAT	0.348													27	2					0	0	0.003954	0	0
CD109	135228	broad.mit.edu	37	6	74516767	74516767	+	Missense_Mutation	SNP	C	T	T	rs141815508		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:74516767C>T	uc003php.2	+	25	3586	c.3161C>T	c.(3160-3162)ACT>ATT	p.T1054I	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.T1054I|CD109_uc010kba.2_Missense_Mutation_p.T977I	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	1054						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TATATTGTAACTTCTCTCCTG	0.363													14	3					0	0	0.004007	0	0
FILIP1	27145	broad.mit.edu	37	6	76022383	76022383	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:76022383G>A	uc003pia.2	-	5	3538	c.3165C>T	c.(3163-3165)TCC>TCT	p.S1055S	FILIP1_uc003phy.1_Silent_p.S1055S|FILIP1_uc003phz.2_Silent_p.S956S|FILIP1_uc010kbe.2_Silent_p.S1058S|FILIP1_uc003pib.1_Silent_p.S807S	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	1055										skin(3)|ovary(1)	4						TATTGGCATTGGAGTTGTATT	0.468													95	17					0	0	0.003610	0	0
C6orf165	154313	broad.mit.edu	37	6	88126407	88126407	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:88126407C>T	uc003plv.2	+	6	585	c.493C>T	c.(493-495)CCT>TCT	p.P165S	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.P165S	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	165										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		GAGTGTTTTTCCTCAGGCAGA	0.328													20	3					0	0	0.003330	0	0
EPHA7	2045	broad.mit.edu	37	6	93955132	93955132	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:93955132G>A	uc003poe.2	-	16	3007	c.2766C>T	c.(2764-2766)TTC>TTT	p.F922F	EPHA7_uc003pof.2_Silent_p.F917F|EPHA7_uc011eac.1_Silent_p.F918F	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	922	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AAAAGGTAGTGAAATCAGGAG	0.363													53	6					0	0	0.003610	0	0
GPR63	81491	broad.mit.edu	37	6	97246852	97246852	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:97246852G>A	uc010kcl.2	-	3	1234	c.756C>T	c.(754-756)TTC>TTT	p.F252F	GPR63_uc003pou.2_Silent_p.F252F	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	252	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		GGAAGGGTATGAAGAAAGAAA	0.463													35	0					0	0	0.005524	0	0
PREP	5550	broad.mit.edu	37	6	105733416	105733416	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:105733416G>A	uc003prc.2	-	12	1697	c.1494C>T	c.(1492-1494)ATC>ATT	p.I498I		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	498					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	CCACTGCCAGGATACCACCCA	0.453													36	5					0	0	0.007835	0	0
QRSL1	55278	broad.mit.edu	37	6	107088727	107088727	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:107088727C>T	uc003prm.2	+	3	330	c.214C>T	c.(214-216)CCT>TCT	p.P72S	QRSL1_uc003prl.2_Missense_Mutation_p.P72S	NM_018292	NP_060762	Q9H0R6	QRSL1_HUMAN	glutaminyl-tRNA synthase	72					translation		ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor				0	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;0.00768)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.248)	Epithelial(6;0.000334)|all cancers(7;0.00157)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0152)	BRCA - Breast invasive adenocarcinoma(108;0.118)|all cancers(137;0.167)|Epithelial(106;0.176)		AGATGGAATTCCTATTGCAGT	0.328													131	14					0	0	0.003610	0	0
GSTM2P1	442245	broad.mit.edu	37	6	111368202	111368202	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:111368202A>G	uc003puq.2	-	1	556	c.421T>C	c.(421-423)TTG>CTG	p.L141L		NR_002932				Homo sapiens chromosome 1 truncated glutathione S-transferase M1 mRNA, complete cds.												0						AAGGCGTCCAACCACTTGGGC	0.493													46	2					0	0	0.003610	0	0
ROS1	6098	broad.mit.edu	37	6	117724305	117724305	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:117724305C>T	uc003pxp.1	-	6	773	c.574G>A	c.(574-576)GGA>AGA	p.G192R	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	192	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ACCATACCTCCATGAGGATGA	0.413			T	GOPC|ROS1	glioblastoma|NSCLC								42	3					0	0	0.003610	0	0
SLC35F1	222553	broad.mit.edu	37	6	118596645	118596645	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:118596645C>T	uc003pxx.3	+	5	862	c.661C>T	c.(661-663)CTT>TTT	p.L221F	SLC35F1_uc003pxy.1_Missense_Mutation_p.L26F	NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	221	Helical; (Potential).				transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		GGTAGGGGACCTTCTGGTCTT	0.448													17	2					0	0	0.004990	0	0
LAMA2	3908	broad.mit.edu	37	6	129762062	129762062	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:129762062G>A	uc003qbn.2	+	43	6292	c.6187G>A	c.(6187-6189)GAT>AAT	p.D2063N	LAMA2_uc003qbo.2_Missense_Mutation_p.D2063N	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2063	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CCAGAACCTCGATGGCCTGAA	0.443													21	4					0	0	0.010504	0	0
LAMA2	3908	broad.mit.edu	37	6	129766881	129766881	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:129766881C>T	uc003qbn.2	+	44	6449	c.6344C>T	c.(6343-6345)CCC>CTC	p.P2115L	LAMA2_uc003qbo.2_Missense_Mutation_p.P2115L	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2115	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AAACTCAAACCCATCAAGGAA	0.368													21	4					0	0	0.010504	0	0
EPB41L2	2037	broad.mit.edu	37	6	131199260	131199260	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:131199260G>A	uc003qch.2	-	14	2209	c.2027C>T	c.(2026-2028)TCC>TTC	p.S676F	EPB41L2_uc003qce.1_Missense_Mutation_p.S54F|EPB41L2_uc003qcf.1_RNA|EPB41L2_uc003qcg.1_Intron|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Intron|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc010kfl.1_Intron|EPB41L2_uc003qcj.1_Missense_Mutation_p.S21F	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	676	Spectrin--actin-binding.				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		TGTCTGTAGGGACAGAGGTGT	0.423													39	7					0	0	0.003610	0	0
MAP7	9053	broad.mit.edu	37	6	136683601	136683601	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:136683601C>T	uc003qgz.2	-	11	1759	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K	MAP7_uc011edf.1_Missense_Mutation_p.E490K|MAP7_uc011edg.1_Missense_Mutation_p.E535K|MAP7_uc010kgu.2_Missense_Mutation_p.E527K|MAP7_uc011edh.1_Missense_Mutation_p.E490K|MAP7_uc010kgv.2_Missense_Mutation_p.E527K|MAP7_uc010kgs.2_Missense_Mutation_p.E359K|MAP7_uc011edi.1_Missense_Mutation_p.E359K|MAP7_uc010kgq.1_Missense_Mutation_p.E411K|MAP7_uc003qha.1_Missense_Mutation_p.E468K	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	505	Potential.				establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		TCAAGCTCTTCCTGCTCCCTC	0.532													63	11					0	0	0.003610	0	0
TXLNB	167838	broad.mit.edu	37	6	139563669	139563669	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:139563669G>A	uc011eds.1	-	10	2214	c.2049C>T	c.(2047-2049)GTC>GTT	p.V683V		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	683						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		AGGCTTAGTCGACGCCTTCCA	0.582													15	4					0	0	0.004007	0	0
TAB2	23118	broad.mit.edu	37	6	149699485	149699485	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:149699485C>T	uc003qmj.2	+	3	612	c.434C>T	c.(433-435)TCC>TTC	p.S145F	TAB2_uc011eec.1_Missense_Mutation_p.S113F|TAB2_uc010kia.1_Missense_Mutation_p.S145F|TAB2_uc010kib.1_Missense_Mutation_p.S145F|TAB2_uc003qmk.3_RNA	NM_015093	NP_055908	Q9NYJ8	TAB2_HUMAN	mitogen-activated protein kinase kinase kinase 7	145					activation of MAPK activity|heart development|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	K63-linked polyubiquitin binding|zinc ion binding				0						ATGTCCAGTTCCTCTGGTGCT	0.443													31	4					0	0	0.002096	0	0
IYD	389434	broad.mit.edu	37	6	150690257	150690257	+	Silent	SNP	G	A	A	rs146748197	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:150690257G>A	uc003qnu.1	+	1	230	c.90G>A	c.(88-90)AAG>AAA	p.K30K	IYD_uc003qnv.1_Silent_p.K30K|IYD_uc003qnw.1_RNA|IYD_uc003qnx.1_Silent_p.K30K|IYD_uc010kik.1_5'UTR	NM_203395	NP_981932	Q6PHW0	IYD1_HUMAN	iodotyrosine dehalogenase 1 isoform 2	30	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	integral to membrane|plasma membrane				ovary(2)	2		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;4.16e-12)		TGGAGAAAAAGAAGGGGGAGC	0.493													70	4					0	0	0.003610	0	0
SYNE1	23345	broad.mit.edu	37	6	152589264	152589264	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:152589264G>A	uc010kiw.2	-	100	19344	c.18742C>T	c.(18742-18744)CTT>TTT	p.L6248F	SYNE1_uc010kiv.2_Missense_Mutation_p.L772F|SYNE1_uc003qos.3_Missense_Mutation_p.L772F|SYNE1_uc003qot.3_Missense_Mutation_p.L6177F|SYNE1_uc003qou.3_Missense_Mutation_p.L6248F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6248	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ACTGAGCGAAGGAGACTCTTC	0.443										HNSCC(10;0.0054)			43	5					0	0	0.003610	0	0
SYNE1	23345	broad.mit.edu	37	6	152737899	152737899	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:152737899C>T	uc010kiw.2	-	41	6275	c.5673G>A	c.(5671-5673)GTG>GTA	p.V1891V	SYNE1_uc003qot.3_Silent_p.V1898V|SYNE1_uc003qou.3_Silent_p.V1891V|SYNE1_uc010kjb.1_Silent_p.V1874V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1891	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGGTTGCTTCCACTGTTTGCC	0.493										HNSCC(10;0.0054)			25	3					0	0	0.003954	0	0
ARID1B	57492	broad.mit.edu	37	6	157528792	157528792	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:157528792C>T	uc003qqn.2	+	20	6615	c.6463C>T	c.(6463-6465)CAG>TAG	p.Q2155*	ARID1B_uc003qqo.2_Nonsense_Mutation_p.Q2115*|ARID1B_uc003qqp.2_Nonsense_Mutation_p.Q2102*	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	2160					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GGCCCAGTACCAGCAGAGCCA	0.582													23	5					0	0	0.002780	0	0
SYNJ2	8871	broad.mit.edu	37	6	158484847	158484847	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:158484847G>A	uc003qqx.1	+	9	1227	c.1152G>A	c.(1150-1152)ATG>ATA	p.M384I	SYNJ2_uc011efm.1_RNA|SYNJ2_uc003qqw.1_Missense_Mutation_p.M384I|SYNJ2_uc003qqy.1_Missense_Mutation_p.M97I|SYNJ2_uc011efn.1_Missense_Mutation_p.M312I|SYNJ2_uc010kjo.1_Missense_Mutation_p.M333I|SYNJ2_uc003qqz.1_Missense_Mutation_p.M1I	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	384	SAC.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		CTTTGCGGATGAACTGTCTTG	0.512													54	9					0	0	0.003610	0	0
FNDC1	84624	broad.mit.edu	37	6	159654123	159654123	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:159654123G>A	uc010kjv.2	+	11	2779	c.2579G>A	c.(2578-2580)AGG>AAG	p.R860K	FNDC1_uc010kjw.1_Missense_Mutation_p.R745K	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	860						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GCCCACCCCAGGGTTCCCTCT	0.622													3	0					0	0	0.000602	0	0
AGPAT4	56895	broad.mit.edu	37	6	161575237	161575237	+	Missense_Mutation	SNP	G	A	A	rs143406726		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:161575237G>A	uc003qtr.1	-	4	681	c.454C>T	c.(454-456)CGC>TGC	p.R152C	AGPAT4_uc003qts.1_Missense_Mutation_p.R12C|AGPAT4_uc011egb.1_Intron|AGPAT4_uc003qtt.1_RNA|AGPAT4_uc011egc.1_Missense_Mutation_p.R152C|AGPAT4_uc011egd.1_Missense_Mutation_p.R90C|AGPAT4_uc011ege.1_Missense_Mutation_p.S95L	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	152					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		ACCGTCTTGCGATCCTGCTCC	0.562													32	6					0	0	0.004878	0	0
INTS1	26173	broad.mit.edu	37	7	1513981	1513981	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:1513981G>A	uc003skn.2	-	41	5753	c.5652C>T	c.(5650-5652)ATC>ATT	p.I1884I	INTS1_uc003skm.1_Silent_p.I21I	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1884					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		GGAGCGCCGCGATCATGGGCA	0.726													16	33					0	0	0.004990	0	0
SNX8	29886	broad.mit.edu	37	7	2302895	2302895	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:2302895G>A	uc003slw.2	-	7	928	c.885C>T	c.(883-885)TTC>TTT	p.F295F		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	295					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		CGAGCAGCGCGAATTCCACAG	0.617													37	16					0	0	0.009718	0	0
IQCE	23288	broad.mit.edu	37	7	2611196	2611196	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:2611196C>T	uc003smo.3	+	4	351	c.167C>T	c.(166-168)TCC>TTC	p.S56F	IQCE_uc010ksm.1_Missense_Mutation_p.S56F|IQCE_uc003sml.1_Missense_Mutation_p.S56F|IQCE_uc011jvy.1_Missense_Mutation_p.S40F|IQCE_uc011jvz.1_5'UTR|IQCE_uc003smk.3_Missense_Mutation_p.S40F|IQCE_uc003smn.3_5'UTR	NM_152558	NP_689771	Q6IPM2	IQCE_HUMAN	IQ motif containing E isoform 1	56											0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.23e-13)		AAAGTGGCCTCCTGGAGGTCC	0.592													36	83					0	0	0.003755	0	0
CARD11	84433	broad.mit.edu	37	7	2962334	2962334	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:2962334C>T	uc003smv.2	-	17	2607	c.2203G>A	c.(2203-2205)GAA>AAA	p.E735K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	735	PDZ.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CAGTGGGCTTCCTCTTTGGTG	0.617			Mis		DLBCL								28	41					0	0	0.008361	0	0
RNF216	54476	broad.mit.edu	37	7	5754796	5754796	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:5754796C>T	uc003soy.1	-	11	1740	c.1550G>A	c.(1549-1551)TGC>TAC	p.C517Y	RNF216_uc010ksz.1_Missense_Mutation_p.C139Y|RNF216_uc010kta.1_Missense_Mutation_p.C139Y|RNF216_uc011jwj.1_Missense_Mutation_p.C139Y|RNF216_uc003sox.1_Missense_Mutation_p.C574Y	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	517	RING-type 1.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		CCCATAGCAGCAGCGACACTC	0.517													63	205					0	0	0.003610	0	0
ZDHHC4	55146	broad.mit.edu	37	7	6624750	6624750	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:6624750C>T	uc003sqi.2	+	8	958	c.600C>T	c.(598-600)ACC>ACT	p.T200T	ZDHHC4_uc003sql.2_Silent_p.T200T|ZDHHC4_uc003sqh.2_Silent_p.T200T|ZDHHC4_uc003sqj.2_Silent_p.T200T|ZDHHC4_uc003sqk.2_Silent_p.T200T|ZDHHC4_uc003sqm.2_Silent_p.T200T	NM_001134388	NP_001127860	Q9NPG8	ZDHC4_HUMAN	zinc finger, DHHC-type containing 4	200	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			breast(1)|pancreas(1)	2		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.1)		ACGTCTTGACCTTGACGGCCT	0.522													20	58					0	0	0.001882	0	0
COL28A1	340267	broad.mit.edu	37	7	7457503	7457503	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:7457503G>A	uc003src.1	-	27	2240	c.2123C>T	c.(2122-2124)TCA>TTA	p.S708L	COL28A1_uc011jxe.1_Missense_Mutation_p.S391L|COL28A1_uc003srd.2_Missense_Mutation_p.S263L	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	708					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		AATTCCCTGTGATCCATAGCC	0.468													49	32					0	0	0.003610	0	0
COL28A1	340267	broad.mit.edu	37	7	7571074	7571074	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:7571074C>T	uc003src.1	-	3	703	c.586G>A	c.(586-588)GAA>AAA	p.E196K	COL28A1_uc011jxe.1_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	196	VWFA 1.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		AGTTTGGCTTCATTGACTACC	0.398													40	23					0	0	0.006230	0	0
THSD7A	221981	broad.mit.edu	37	7	11485733	11485733	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:11485733C>T	uc003ssf.3	-	13	3271	c.3019G>A	c.(3019-3021)GAT>AAT	p.D1007N		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1007	TSP type-1 10.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CCATTTTGATCGTAGCATGCC	0.423										HNSCC(18;0.044)			73	194					0	0	0.003610	0	0
MEOX2	4223	broad.mit.edu	37	7	15652161	15652161	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:15652161C>T	uc003stc.2	-	3	1047	c.766G>A	c.(766-768)GAA>AAA	p.E256K	MEOX2_uc011jxw.1_Missense_Mutation_p.E256K	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	256					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		AGTTCCTTTTCCCGAGCCGCA	0.507													54	96					0	0	0.003610	0	0
FERD3L	222894	broad.mit.edu	37	7	19184566	19184566	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:19184566G>A	uc003suo.1	-	1	479	c.420C>T	c.(418-420)ATC>ATT	p.I140I	uc003sun.1_RNA	NM_152898	NP_690862	Q96RJ6	FER3L_HUMAN	nephew of atonal 3	140	Helix-loop-helix motif.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			large_intestine(1)	1						GGAGGGTCTCGATCCGGGACA	0.567													34	34					0	0	0.003755	0	0
MACC1	346389	broad.mit.edu	37	7	20201451	20201451	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:20201451C>T	uc003sus.3	-	4	344	c.35G>A	c.(34-36)GGA>GAA	p.G12E	MACC1_uc010kug.2_Missense_Mutation_p.G12E	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	12					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						TGCAATTCTTCCTGACCGAAA	0.333													107	121					0	0	0.003610	0	0
ITGB8	3696	broad.mit.edu	37	7	20441498	20441498	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:20441498G>A	uc003suu.2	+	10	2141	c.1436G>A	c.(1435-1437)GGA>GAA	p.G479E	ITGB8_uc011jyh.1_Missense_Mutation_p.G344E	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	479	I.|Cysteine-rich tandem repeats.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						GGACCTAAAGGAAAGTGTGTA	0.358													69	98					0	0	0.003610	0	0
ABCB5	340273	broad.mit.edu	37	7	20725334	20725334	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:20725334G>A	uc003suw.3	+	7	1096	c.550G>A	c.(550-552)GAT>AAT	p.D184N	ABCB5_uc010kuh.2_Missense_Mutation_p.D629N	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	184	Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TAAAAAAGCTGATGAACAGAT	0.343													31	36					0	0	0.003271	0	0
RPL23P8	222901	broad.mit.edu	37	7	20867419	20867419	+	RNA	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:20867419A>G	uc011jyj.1	+	1		c.503A>G				NR_026673				Homo sapiens ribosomal protein L23 pseudogene 8 (RPL23P8), non-coding RNA.												0						AAAATTTTAAACCCATTAAAA	0.338													13	20					0	0	0.001368	0	0
DNAH11	8701	broad.mit.edu	37	7	21628935	21628935	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:21628935G>A	uc003svc.2	+	12	2114	c.2083G>A	c.(2083-2085)GAT>AAT	p.D695N		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	695	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AAGTAATGTGGATGAAATCTG	0.338									Kartagener_syndrome				93	96					0	0	0.003610	0	0
IGF2BP3	10643	broad.mit.edu	37	7	23458423	23458423	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:23458423C>T	uc003swg.2	-	3	523	c.257G>A	c.(256-258)CGA>CAA	p.R86Q	IGF2BP3_uc003swh.1_RNA	NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	86	RRM 2.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						CGGGATATTTCGTATCTGAAG	0.303													12	9					0	0	0.004007	0	0
STK31	56164	broad.mit.edu	37	7	23854762	23854762	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:23854762G>A	uc003sws.3	+	23	2828	c.2761_splice	c.e23-1	p.L921_splice	STK31_uc003swt.3_Splice_Site_p.L898_splice|STK31_uc011jze.1_Intron|STK31_uc010kuq.2_Splice_Site_p.L898_splice|STK31_uc003swv.1_Splice_Site_p.L87_splice	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a								ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTCTTTCACAGCTTTCTGTTC	0.358													26	39					0	0	0.003954	0	0
GHRHR	2692	broad.mit.edu	37	7	31014598	31014598	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:31014598G>A	uc003tbx.2	+	9	873	c.825G>A	c.(823-825)CTG>CTA	p.L275L	GHRHR_uc003tbw.1_Silent_p.L275L|GHRHR_uc003tby.2_Silent_p.L211L|GHRHR_uc003tbz.2_Missense_Mutation_p.G42R	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor	275	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	GCTGGGACCTGGACGACACCT	0.577											OREG0017943	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	119					0	0	0.008740	0	0
PDE1C	5137	broad.mit.edu	37	7	31867938	31867938	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:31867938C>T	uc003tcm.1	-	12	1722	c.1253G>A	c.(1252-1254)CGA>CAA	p.R418Q	PDE1C_uc003tcn.1_Missense_Mutation_p.R418Q|PDE1C_uc003tco.1_Missense_Mutation_p.R478Q|PDE1C_uc003tcr.2_Missense_Mutation_p.R418Q|PDE1C_uc003tcs.2_Missense_Mutation_p.R418Q	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	418	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			AGTGGACTTTCGGTCACACAG	0.468													41	19					0	0	0.002852	0	0
PDE1C	5137	broad.mit.edu	37	7	31912913	31912913	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:31912913G>A	uc003tcm.1	-	6	1070	c.601C>T	c.(601-603)CGT>TGT	p.R201C	PDE1C_uc003tcn.1_Missense_Mutation_p.R201C|PDE1C_uc003tco.1_Missense_Mutation_p.R261C|PDE1C_uc003tcr.2_Missense_Mutation_p.R201C|PDE1C_uc003tcs.2_Missense_Mutation_p.R201C	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	201					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			ACCTTGAAACGGCTGATCAGA	0.368													52	32					0	0	0.003610	0	0
TBX20	57057	broad.mit.edu	37	7	35242183	35242183	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:35242183G>A	uc011kas.1	-	8	1214	c.1203C>T	c.(1201-1203)GCC>GCT	p.A401A		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	401						nucleus	DNA binding			central_nervous_system(1)	1						AGCTGGCAATGGCCGATGGTG	0.557													26	16					0	0	0.004656	0	0
AOAH	313	broad.mit.edu	37	7	36633966	36633966	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:36633966C>T	uc003tfh.3	-	12	1318	c.917G>A	c.(916-918)GGA>GAA	p.G306E	AOAH_uc010kxf.2_Missense_Mutation_p.G306E|AOAH_uc011kba.1_Missense_Mutation_p.G274E	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	306					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GTCCAGAAATCCTGTAGCACC	0.443													56	49					0	0	0.003610	0	0
TXNDC3	51314	broad.mit.edu	37	7	37901644	37901644	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:37901644C>T	uc003tfn.2	+	7	657	c.285C>T	c.(283-285)ATC>ATT	p.I95I		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	95	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GCAAAATTATCGAAAAGATTC	0.388									Kartagener_syndrome				40	29					0	0	0.003214	0	0
TXNDC3	51314	broad.mit.edu	37	7	37901739	37901739	+	Missense_Mutation	SNP	G	A	A	rs151218163		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:37901739G>A	uc003tfn.2	+	7	752	c.380G>A	c.(379-381)CGA>CAA	p.R127Q		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	127					cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity	p.R127*(1)		ovary(1)|breast(1)|central_nervous_system(1)	3						GAAATGGCTCGACCTCAGGTA	0.363									Kartagener_syndrome				21	17					0	0	0.002780	0	0
Unknown	0	broad.mit.edu	37	7	38374786	38374786	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:38374786G>A	uc010kxk.1	-	2		c.331C>T								Homo sapiens cDNA FLJ77147 complete cds, highly similar to Homo sapiens T cell receptor gamma variable 7, mRNA.																		GGAGTAGTAGGGGTCATAGTA	0.438													7	21					0	0	0.003080	0	0
ADCY1	107	broad.mit.edu	37	7	45717493	45717493	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:45717493A>C	uc003tne.3	+	9	1649	c.1631A>C	c.(1630-1632)GAA>GCA	p.E544A		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	544	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	ACAGCCTCGGAAAAACTCAGA	0.498													52	118					0	0	0.003610	0	0
ADCY1	107	broad.mit.edu	37	7	45719389	45719389	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:45719389C>T	uc003tne.3	+	11	1998	c.1980C>T	c.(1978-1980)GTC>GTT	p.V660V		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	660					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TCACCCGGGTCCAGGTATGTG	0.552													23	42					0	0	0.005443	0	0
CDC14C	168448	broad.mit.edu	37	7	48965213	48965213	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:48965213G>A	uc010kyv.1	+	1	1057	c.945G>A	c.(943-945)AGG>AGA	p.R315R		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						CGTGGGTAAGGATCTGCAGAC	0.512													22	35					0	0	0.002299	0	0
IKZF1	10320	broad.mit.edu	37	7	50450371	50450371	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:50450371G>A	uc003tow.3	+	6	723	c.555G>A	c.(553-555)AGG>AGA	p.R185R	IKZF1_uc003tox.3_Silent_p.R185R|IKZF1_uc003toy.3_Silent_p.R185R|IKZF1_uc011kck.1_Silent_p.R98R|IKZF1_uc003toz.3_Silent_p.R155R|IKZF1_uc010kyx.2_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	185	C2H2-type 3.|Required for both high-affinity DNA binding and pericentromeric heterochromatin localization (By similarity).				cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GCCGCCGGAGGGACGCCCTCA	0.652			D		ALL								6	16					0	0	0.003080	0	0
DDC	1644	broad.mit.edu	37	7	50531072	50531072	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:50531072G>A	uc003tpf.3	-	14	1386	c.1300C>T	c.(1300-1302)CAC>TAC	p.H434Y	DDC_uc010kza.2_Missense_Mutation_p.H349Y|DDC_uc003tpg.3_Missense_Mutation_p.H434Y	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	434					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	GGAACCAAGTGGATTTTTTTG	0.502													51	40					0	0	0.003610	0	0
GRB10	2887	broad.mit.edu	37	7	50671703	50671703	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:50671703G>A	uc003tpi.2	-	14	1567	c.1536C>T	c.(1534-1536)CTC>CTT	p.L512L	GRB10_uc003tph.3_Silent_p.L454L|GRB10_uc003tpj.2_Silent_p.L466L|GRB10_uc003tpk.2_Silent_p.L512L|GRB10_uc010kzb.2_Silent_p.L454L|GRB10_uc003tpl.2_Silent_p.L506L|GRB10_uc003tpm.2_Silent_p.L454L|GRB10_uc003tpn.2_Silent_p.L454L	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	512	SH2.				insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					ACCCATCCACGAGCCCTTGCT	0.378									Russell-Silver_syndrome				137	92					0	0	0.003610	0	0
SEPT14	346288	broad.mit.edu	37	7	55914298	55914298	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:55914298C>T	uc003tqz.2	-	3	204	c.87G>A	c.(85-87)ACG>ACA	p.T29T		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	29					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			AATGTCCAATCGTAGTTAAAC	0.299													95	39					0	0	0.003610	0	0
ZNF679	168417	broad.mit.edu	37	7	63709527	63709527	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:63709527G>A	uc003tsx.2	+	2	301	c.32G>A	c.(31-33)CGA>CAA	p.R11Q		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CCTGGAAGCCGAGAAATGGTG	0.572													19	36					0	0	0.002299	0	0
LOC168474	168474	broad.mit.edu	37	7	64313020	64313020	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:64313020C>T	uc003ttj.1	-	1	1159	c.607G>A	c.(607-609)GTG>ATG	p.V203M		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						TTCATCATCACCTCCTCGTAG	0.498													114	78					0	0	0.003610	0	0
LOC168474	168474	broad.mit.edu	37	7	64313612	64313612	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:64313612A>T	uc003ttj.1	-	1	567	c.15T>A	c.(13-15)AAT>AAA	p.N5K		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						GATTCCAGCAATTTTTGCAGG	0.453													85	50					0	0	0.003610	0	0
ZNF273	10793	broad.mit.edu	37	7	64389038	64389038	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:64389038C>T	uc003tto.2	+	4	1408	c.1332C>T	c.(1330-1332)ACC>ACT	p.T444T	ZNF273_uc003ttl.2_Silent_p.T379T|ZNF273_uc003ttn.2_Silent_p.T379T	NM_021148	NP_066971	Q14593	ZN273_HUMAN	zinc finger protein 273	444	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(55;0.0295)|all_lung(88;0.0691)				TATTCTCAACCCTTACTAAAC	0.348													23	50					0	0	0.002780	0	0
FKBP6	8468	broad.mit.edu	37	7	72440394	72440394	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:72440394C>T	uc003twz.2	+	1	203	c.50C>T	c.(49-51)CCC>CTC	p.P17L	NSUN5P2_uc010lao.2_5'Flank|uc003tws.1_5'Flank|uc003twv.2_RNA|STAG3L3_uc011kem.1_RNA|LOC541473_uc010lap.2_RNA|LOC541473_uc003twx.3_Missense_Mutation_p.P17L	NM_001135211	NP_001128683	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform b	17					protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				GACGACGCCCCCGGCCAGGTG	0.687													3	9					0	0	0.001168	0	0
BAZ1B	9031	broad.mit.edu	37	7	72861688	72861688	+	Silent	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:72861688A>T	uc003tyc.2	-	16	4095	c.3750T>A	c.(3748-3750)GCT>GCA	p.A1250A		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	1250	Potential.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				TGTCCTCAGAAGCAGACTCTT	0.348													65	34					0	0	0.003610	0	0
ELN	2006	broad.mit.edu	37	7	73474738	73474738	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:73474738G>A	uc003tzw.2	+	25	1763	c.1672G>A	c.(1672-1674)GGA>AGA	p.G558R	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Missense_Mutation_p.G552R|ELN_uc003tzz.2_Missense_Mutation_p.G471R|ELN_uc003tzo.2_Missense_Mutation_p.G504R|ELN_uc003tzp.2_Missense_Mutation_p.G463R|ELN_uc003tzq.2_Missense_Mutation_p.G416R|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Missense_Mutation_p.G533R|ELN_uc003tzt.2_Missense_Mutation_p.G557R|ELN_uc003tzu.2_Missense_Mutation_p.G538R|ELN_uc003tzv.2_Missense_Mutation_p.G523R|ELN_uc003tzx.2_Missense_Mutation_p.G542R|ELN_uc011kff.1_Missense_Mutation_p.G552R|ELN_uc003tzy.2_Missense_Mutation_p.G528R	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	581	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	TGGCATCCCTGGACTTGGAGT	0.632			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						27	65					0	0	0.006320	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997178	82997178	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:82997178C>T	uc003uhy.1	-	17	2518	c.2052G>A	c.(2050-2052)AAG>AAA	p.K684K		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	684					axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				CCTCATCGTCCTTGTTAAACA	0.483													68	38					0	0	0.003610	0	0
GRM3	2913	broad.mit.edu	37	7	86394884	86394884	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:86394884C>T	uc003uid.2	+	2	1522	c.423C>T	c.(421-423)CTC>CTT	p.L141L	GRM3_uc010lef.2_Silent_p.L139L|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	141	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TCCCACTTCTCATTGCAGGGG	0.413													25	46					0	0	0.005443	0	0
GRM3	2913	broad.mit.edu	37	7	86415776	86415776	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:86415776G>A	uc003uid.2	+	3	1767	c.668G>A	c.(667-669)GGG>GAG	p.G223E	GRM3_uc010lef.2_Missense_Mutation_p.G221E|GRM3_uc010leg.2_Missense_Mutation_p.G95E|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	223	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GGTGATTACGGGGAGACAGGG	0.612													20	60					0	0	0.001882	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86569381	86569381	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:86569381G>A	uc011kha.1	-	6	977	c.792C>T	c.(790-792)ATC>ATT	p.I264I	KIAA1324L_uc003uif.1_Silent_p.I24I|KIAA1324L_uc011kgz.1_Silent_p.I150I|KIAA1324L_uc003uie.2_Silent_p.I97I	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	264	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					AACCCATAAGGATGCCTGTAG	0.408													71	36					0	0	0.003610	0	0
ABCB1	5243	broad.mit.edu	37	7	87175237	87175237	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:87175237C>T	uc003uiz.1	-	16	2247	c.1829G>A	c.(1828-1830)GGA>GAA	p.G610E	ABCB1_uc011khc.1_Missense_Mutation_p.G546E	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	610	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	ATCATGATTTCCTTTCTCCAC	0.398													30	71					0	0	0.008361	0	0
ADAM22	53616	broad.mit.edu	37	7	87759722	87759722	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:87759722C>T	uc003ujn.2	+	10	852	c.773C>T	c.(772-774)TCC>TTC	p.S258F	ADAM22_uc003ujj.1_Missense_Mutation_p.S258F|ADAM22_uc003ujk.1_Missense_Mutation_p.S258F|ADAM22_uc003ujl.1_Missense_Mutation_p.S258F|ADAM22_uc003ujm.2_Missense_Mutation_p.S258F|ADAM22_uc003ujo.2_Missense_Mutation_p.S258F|ADAM22_uc003ujp.1_Missense_Mutation_p.S310F	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	258	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			CATCGGCTTTCCGTTGTACAT	0.368													35	60					0	0	0.005524	0	0
MGC26647	219557	broad.mit.edu	37	7	88423732	88423732	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:88423732G>A	uc003ujv.2	-	2	707	c.525C>T	c.(523-525)CTC>CTT	p.L175L	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	175											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			GAGTTTGTGTGAGAAAATCTG	0.423													43	96					0	0	0.003610	0	0
C7orf63	79846	broad.mit.edu	37	7	89897657	89897657	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:89897657T>A	uc010lep.2	+	6	742	c.491T>A	c.(490-492)GTT>GAT	p.V164D	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_Translation_Start_Site|C7orf63_uc011khj.1_Intron|C7orf63_uc010leo.2_Missense_Mutation_p.V162D	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	164							binding			ovary(1)	1						AAGTGTATTGTTGATTTTTAT	0.338													19	43					0	0	0.010504	0	0
SAMD9	54809	broad.mit.edu	37	7	92733781	92733781	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:92733781G>A	uc003umf.2	-	3	1886	c.1630C>T	c.(1630-1632)CTA>TTA	p.L544L	SAMD9_uc003umg.2_Silent_p.L544L	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	544						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GACAGTAATAGAAATACCACC	0.398													72	44					0	0	0.003610	0	0
CCDC132	55610	broad.mit.edu	37	7	92970754	92970754	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:92970754C>T	uc003umo.2	+	23	2202	c.2074C>T	c.(2074-2076)CCT>TCT	p.P692S	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.P662S|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.P412S	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	692											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			TTCAGCTGATCCTACTGCCAC	0.393													16	16					0	0	0.004007	0	0
COL1A2	1278	broad.mit.edu	37	7	94045765	94045765	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:94045765C>T	uc003ung.1	+	31	2284	c.1813C>T	c.(1813-1815)CCT>TCT	p.P605S	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_5'Flank	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	605					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TCCTACTGGTCCTATTGGAAG	0.502										HNSCC(75;0.22)			9	4					0	0	0.008291	0	0
NPTX2	4885	broad.mit.edu	37	7	98256594	98256594	+	Missense_Mutation	SNP	G	A	A	rs141241960		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:98256594G>A	uc003upl.2	+	4	1183	c.1006G>A	c.(1006-1008)GAG>AAG	p.E336K		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	336	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding	p.E336K(1)		central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			GGGCACTGGGGAGAACCTGGC	0.642													10	32					0	0	0.000978	0	0
CYP3A5	1577	broad.mit.edu	37	7	99273791	99273791	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:99273791T>C	uc003urq.2	-	2	199	c.112A>G	c.(112-114)ATT>GTT	p.I38V	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urr.2_5'UTR|CYP3A5_uc011kiy.1_Missense_Mutation_p.I28V|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron|CYP3A5_uc003urt.2_Missense_Mutation_p.I38V	NM_000777	NP_000768	P20815	CP3A5_HUMAN	cytochrome P450, family 3, subfamily A,	38					alkaloid catabolic process|drug catabolic process|oxidative demethylation|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0	all_epithelial(64;2.77e-08)|Lung NSC(181;0.00396)|all_lung(186;0.00659)|Esophageal squamous(72;0.0166)				Alfentanil(DB00802)|Clopidogrel(DB00758)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Indinavir(DB00224)|Irinotecan(DB00762)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Mephenytoin(DB00532)|Midazolam(DB00683)|Mifepristone(DB00834)|Phenytoin(DB00252)|Quinine(DB00468)|Saquinavir(DB01232)|Tacrolimus(DB00864)|Troleandomycin(DB01361)|Verapamil(DB00661)|Vincristine(DB00541)	GGCCCTGGAATTCCCAGTCTC	0.453													39	73					0	0	0.002522	0	0
MUC17	140453	broad.mit.edu	37	7	100681034	100681034	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:100681034C>T	uc003uxp.1	+	3	6390	c.6337C>T	c.(6337-6339)CCG>TCG	p.P2113S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2113	Extracellular (Potential).|33.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAGCACCACGCCGGTGGCCAG	0.498													222	182					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100681578	100681578	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:100681578C>T	uc003uxp.1	+	3	6934	c.6881C>T	c.(6880-6882)TCT>TTT	p.S2294F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2294	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|36.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTGGCCAATTCTGAGGTTAGC	0.488													234	137					0	0	0.003610	0	0
SERPINE1	5054	broad.mit.edu	37	7	100780314	100780314	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:100780314G>A	uc003uxt.2	+	8	1268	c.1120G>A	c.(1120-1122)GAG>AAG	p.E374K	SERPINE1_uc011kkj.1_Missense_Mutation_p.E359K|SERPINE1_uc003uxu.1_3'UTR	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	374					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	GGCCCCCGAGGAGATCATCAT	0.592													46	54					0	0	0.003610	0	0
FBXL13	222235	broad.mit.edu	37	7	102608513	102608513	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:102608513G>A	uc003vaq.2	-	7	974	c.547C>T	c.(547-549)CAT>TAT	p.H183Y	FBXL13_uc010liq.1_5'UTR|FBXL13_uc010lir.1_Missense_Mutation_p.H183Y|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.H183Y|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	183	F-box.										0						ATCCAGGCATGATTAACTTGA	0.328													40	29					0	0	0.002852	0	0
FBXL13	222235	broad.mit.edu	37	7	102669159	102669159	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:102669159G>A	uc003vaq.2	-	4	532	c.105C>T	c.(103-105)GTC>GTT	p.V35V	FBXL13_uc010lir.1_Silent_p.V35V|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Silent_p.V35V|FBXL13_uc003vav.2_Intron	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	35											0						CAGCCAGGACGACATTTTCAT	0.343													46	34					0	0	0.003610	0	0
RELN	5649	broad.mit.edu	37	7	103162566	103162566	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:103162566C>T	uc003vca.2	-	48	7731	c.7571G>A	c.(7570-7572)CGA>CAA	p.R2524Q	RELN_uc010liz.2_Missense_Mutation_p.R2524Q	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2524					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GGATGGAGCTCGATTGAAGTT	0.547													23	57					0	0	0.002299	0	0
RELN	5649	broad.mit.edu	37	7	103270545	103270545	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:103270545G>A	uc003vca.2	-	20	2704	c.2544C>T	c.(2542-2544)TCC>TCT	p.S848S	RELN_uc010liz.2_Silent_p.S848S	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	848					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTTCTCTCTGGGAAGAATGAT	0.393													41	78					0	0	0.008740	0	0
RELN	5649	broad.mit.edu	37	7	103294586	103294586	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:103294586C>T	uc003vca.2	-	13	1668	c.1508G>A	c.(1507-1509)AGA>AAA	p.R503K	RELN_uc010liz.2_Missense_Mutation_p.R503K	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	503					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ATGCTCTTTTCTTCCTTCAAT	0.398													53	40					0	0	0.003610	0	0
RELN	5649	broad.mit.edu	37	7	103338452	103338452	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:103338452C>T	uc003vca.2	-	10	1151	c.991G>A	c.(991-993)GAA>AAA	p.E331K	RELN_uc010liz.2_Missense_Mutation_p.E331K	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	331					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity	p.E331K(1)		ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CGAAGATTTTCCTGCTTCCAC	0.448													50	106					0	0	0.003610	0	0
PIK3CG	5294	broad.mit.edu	37	7	106508907	106508907	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:106508907G>A	uc003vdv.3	+	2	986	c.901G>A	c.(901-903)GAA>AAA	p.E301K	PIK3CG_uc003vdu.2_Missense_Mutation_p.E301K|PIK3CG_uc003vdw.2_Missense_Mutation_p.E301K	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	301					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						CAAGAACGGAGAAGAGATTCA	0.592													15	47					0	0	0.003163	0	0
SLC26A3	1811	broad.mit.edu	37	7	107420173	107420173	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:107420173C>T	uc003ver.2	-	12	1558	c.1347G>A	c.(1345-1347)AAG>AAA	p.K449K	SLC26A3_uc003ves.2_Silent_p.K414K	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	449	Helical; (Potential).				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TCAGCATTCCCTTTAAGTTTC	0.383													35	18					0	0	0.007835	0	0
ASZ1	136991	broad.mit.edu	37	7	117067579	117067579	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:117067579G>A	uc003vjb.2	-	1	1	c.-62_splice	c.e1-1		ASZ1_uc011kno.1_Splice_Site|ASZ1_uc011knp.1_Splice_Site	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper						cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			ATGCGCACCGGGGTGGGGCGT	0.731											OREG0003439	type=REGULATORY REGION|Gene=ASZ1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	9	6					0	0	0.004482	0	0
CFTR	1080	broad.mit.edu	37	7	117232512	117232512	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:117232512G>A	uc003vjd.2	+	14	2423	c.2291G>A	c.(2290-2292)CGA>CAA	p.R764Q	CFTR_uc011knq.1_Missense_Mutation_p.R170Q	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	764	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	CTTCAGGCACGAAGGAGGCAG	0.532									Cystic_Fibrosis				11	22					0	0	0.008291	0	0
KCND2	3751	broad.mit.edu	37	7	119915232	119915232	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:119915232G>A	uc003vjj.1	+	1	1511	c.546G>A	c.(544-546)ACG>ACA	p.T182T		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	182	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					ACACCAGCACGATGGCCCTGG	0.602													35	20					0	0	0.002836	0	0
TSPAN12	23554	broad.mit.edu	37	7	120428792	120428792	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:120428792C>T	uc003vjk.2	-	8	1146	c.772G>A	c.(772-774)GAC>AAC	p.D258N	TSPAN12_uc010lkj.2_Missense_Mutation_p.D131N	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	258	Cytoplasmic (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					ATCATTTGGTCTGTCCCCGGC	0.468													56	35					0	0	0.003610	0	0
TSPAN12	23554	broad.mit.edu	37	7	120455792	120455792	+	Silent	SNP	C	T	T	rs139536082	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:120455792C>T	uc003vjk.2	-	5	725	c.351G>A	c.(349-351)CAG>CAA	p.Q117Q		NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	117	Extracellular (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					CCATAAGTTCCTGTTCATATG	0.284													18	16					0	0	0.010504	0	0
SLC13A1	6561	broad.mit.edu	37	7	122811882	122811882	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:122811882C>T	uc003vkm.2	-	3	330	c.305G>A	c.(304-306)TGG>TAG	p.W102*	SLC13A1_uc010lks.2_5'UTR	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	102						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	GTGCAAATTCCATTTTTCTAT	0.378													79	51					0	0	0.003610	0	0
SLC13A1	6561	broad.mit.edu	37	7	122839970	122839970	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:122839970G>A	uc003vkm.2	-	1	56	c.31C>T	c.(31-33)CGC>TGC	p.R11C	SLC13A1_uc010lks.2_5'UTR	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	11						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	AGAAATCGGCGATAAACCAGA	0.428													21	44					0	0	0.001882	0	0
SPAM1	6677	broad.mit.edu	37	7	123593796	123593796	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:123593796G>A	uc003vld.2	+	4	574	c.172G>A	c.(172-174)GAA>AAA	p.E58K	SPAM1_uc003vle.2_Missense_Mutation_p.E58K|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.E58K|SPAM1_uc010lku.2_Missense_Mutation_p.E58K	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	58					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TGCCCCAAGTGAATTTTGTCT	0.448													29	25					0	0	0.009535	0	0
GRM8	2918	broad.mit.edu	37	7	126086241	126086241	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:126086241T>G	uc003vlr.2	-	9	2927	c.2616A>C	c.(2614-2616)AAA>AAC	p.K872N	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.K872N|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	872	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TGTCATTTCCTTTTTGGATCA	0.428										HNSCC(24;0.065)			65	118					0	0	0.003610	0	0
FLNC	2318	broad.mit.edu	37	7	128489238	128489238	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:128489238C>T	uc003vnz.3	+	29	5140	c.4931C>T	c.(4930-4932)TCC>TTC	p.S1644F	FLNC_uc003voa.3_Missense_Mutation_p.S1644F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1644	Filamin 15.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TTTCCAGTGTCCATTGGAGGC	0.662													11	31					0	0	0.001855	0	0
C7orf45	136263	broad.mit.edu	37	7	129856019	129856019	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:129856019G>A	uc003vpp.2	+	3	491	c.444G>A	c.(442-444)ACG>ACA	p.T148T		NM_145268	NP_660311	Q8WWF3	CG045_HUMAN	hypothetical protein LOC136263	148						integral to membrane					0	Melanoma(18;0.0435)					GTGATACTACGGAGTATGGCA	0.483													30	72					0	0	0.002445	0	0
CPA5	93979	broad.mit.edu	37	7	130002769	130002769	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:130002769G>A	uc010lmd.1	+	10	1301	c.681G>A	c.(679-681)CTG>CTA	p.L227L	CPA5_uc003vps.2_Silent_p.L227L|CPA5_uc003vpt.2_Silent_p.L227L|CPA5_uc010lme.1_Silent_p.L227L|CPA5_uc003vpu.1_Silent_p.L227L	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	227					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					CAGACATACTGAATGCCATGG	0.532													26	45					0	0	0.006320	0	0
PLXNA4	91584	broad.mit.edu	37	7	131870101	131870101	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:131870101C>T	uc003vra.3	-	16	3344	c.3115G>A	c.(3115-3117)GAC>AAC	p.D1039N		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1039	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						ATGGTGGGGTCTTCCACATAC	0.552													65	35					0	0	0.003610	0	0
CHRM2	1129	broad.mit.edu	37	7	136700939	136700939	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:136700939T>A	uc003vtf.1	+	4	1950	c.1327T>A	c.(1327-1329)TGC>AGC	p.C443S	CHRM2_uc003vtg.1_Missense_Mutation_p.C443S|CHRM2_uc003vtj.1_Missense_Mutation_p.C443S|CHRM2_uc003vtk.1_Missense_Mutation_p.C443S|CHRM2_uc003vtl.1_Missense_Mutation_p.C443S|CHRM2_uc003vtm.1_Missense_Mutation_p.C443S|CHRM2_uc003vti.1_Missense_Mutation_p.C443S|CHRM2_uc003vto.1_Missense_Mutation_p.C443S|CHRM2_uc003vtn.1_Missense_Mutation_p.C443S|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	443	Helical; Name=7; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CTATGCACTTTGCAATGCCAC	0.413													50	99					0	0	0.003610	0	0
AKR1D1	6718	broad.mit.edu	37	7	137773491	137773491	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:137773491G>A	uc003vtz.2	+	2	307	c.238G>A	c.(238-240)GAA>AAA	p.E80K	AKR1D1_uc011kqb.1_Missense_Mutation_p.E80K|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Missense_Mutation_p.E80K|AKR1D1_uc011kqf.1_Missense_Mutation_p.E80K	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	80					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						GGTGCGGAGGGAAGATATCTT	0.473													5	5					0	0	0.001168	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138764796	138764796	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:138764796G>A	uc003vun.2	-	4	1279	c.891C>T	c.(889-891)TTC>TTT	p.F297F	ZC3HAV1_uc003vuo.2_5'Flank|ZC3HAV1_uc003vup.2_Silent_p.F297F	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	297					response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						CCAGATACGTGAACTTGCGGG	0.597													26	59					0	0	0.003330	0	0
UBN2	254048	broad.mit.edu	37	7	138946034	138946034	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:138946034G>A	uc011kqr.1	+	6	942	c.942G>A	c.(940-942)AAG>AAA	p.K314K	UBN2_uc003vuv.2_Silent_p.K37K	NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	314	Lys-rich.									ovary(1)|skin(1)	2						CTGAAAAAAAGAAGAAACGTT	0.353													17	53					0	0	0.004007	0	0
JHDM1D	80853	broad.mit.edu	37	7	139818920	139818920	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:139818920G>A	uc003vvm.2	-	9	1243	c.1239C>T	c.(1237-1239)ACC>ACT	p.T413T	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	413					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TACCTTTCAGGGTTTCCAGCA	0.353													77	182					0	0	0.003610	0	0
SLC37A3	84255	broad.mit.edu	37	7	140080110	140080110	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:140080110A>T	uc003vvo.2	-	3	336	c.170T>A	c.(169-171)TTT>TAT	p.F57Y	SLC37A3_uc003vvp.2_Missense_Mutation_p.F57Y|SLC37A3_uc010lnh.2_Missense_Mutation_p.F57Y|SLC37A3_uc011kqz.1_RNA|SLC37A3_uc011kra.1_Missense_Mutation_p.F57Y|SLC37A3_uc011krb.1_Missense_Mutation_p.F57Y	NM_207113	NP_996996	Q8NCC5	SPX3_HUMAN	solute carrier family 37 (glycerol-3-phosphate	57					carbohydrate transport|transmembrane transport	integral to membrane				ovary(3)	3	Melanoma(164;0.0142)					TGACGTGTTAAAAGCACTTGG	0.458													24	36					0	0	0.008361	0	0
BRAF	673	broad.mit.edu	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	C	C	rs121913370		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:140453193T>C	uc003vwc.3	-	15	1803	c.1742A>G	c.(1741-1743)AAT>AGT	p.N581S		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	581	Protein kinase.		N -> D (in CFC syndrome).|N -> S (in a colorectal adenocarcinoma sample; somatic mutation).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.N581S(7)|p.N581Y(1)|p.N581I(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	AAGAAATATATCTGAGGTGTA	0.358		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				39	33					0	0	0.009718	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673385	141673385	+	Silent	SNP	G	A	A	rs144536521		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:141673385G>A	uc003vwx.1	-	1	189	c.105C>T	c.(103-105)TTC>TTT	p.F35F		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	35	Helical; Name=1; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					CCAAGAAAACGAAGGCATTGG	0.483													33	53					0	0	0.004289	0	0
MGAM	8972	broad.mit.edu	37	7	141756641	141756641	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:141756641C>T	uc003vwy.2	+	30	3646	c.3592C>T	c.(3592-3594)CAG>TAG	p.Q1198*		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1198	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGTGACGTTCCAGCCCCTGCC	0.517													17	34					0	0	0.004990	0	0
TRYX3	136541	broad.mit.edu	37	7	141954960	141954960	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:141954960C>T	uc003vxb.2	-	3	671	c.351G>A	c.(349-351)GTG>GTA	p.V117V	TRYX3_uc003vxc.3_Silent_p.V117V	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	117	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					TGGCTAATTTCACATAGTCAT	0.403													40	84					0	0	0.006999	0	0
Unknown	0	broad.mit.edu	37	7	142498870	142498870	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:142498870G>A	uc011ksh.1	+	3		c.249G>A			uc011ksi.1_RNA|uc003vzw.1_RNA|uc010loj.1_RNA|uc003wad.2_RNA|uc003wag.1_3'UTR|uc003wbe.3_RNA|uc003wbf.3_RNA|uc003wbg.3_RNA|uc003wbh.3_Silent_p.G95G|uc003wbi.3_RNA|uc003wbj.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone:TCRVB.3.																		GGGTGAATGGGAAGGAGGTGC	0.622													14	93					0	0	0.010504	0	0
KEL	3792	broad.mit.edu	37	7	142640915	142640915	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:142640915C>T	uc003wcb.2	-	14	1757	c.1547G>A	c.(1546-1548)CGA>CAA	p.R516Q		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	516	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					AATTCTAGCTCGGAGGGACCG	0.557													14	38					0	0	0.004007	0	0
PIP	5304	broad.mit.edu	37	7	142829228	142829228	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:142829228C>T	uc003wcf.1	+	1	55	c.19C>T	c.(19-21)CTG>TTG	p.L7L		NM_002652	NP_002643	P12273	PIP_HUMAN	prolactin-induced protein precursor	7						extracellular region	actin binding			ovary(1)	1	Melanoma(164;0.059)	Ovarian(593;2.82e-05)|Breast(660;0.012)		BRCA - Breast invasive adenocarcinoma(188;0.0026)|LUSC - Lung squamous cell carcinoma(290;0.0733)|Lung(243;0.08)		GCTCCAGCTCCTGTTCAGGGC	0.562													225	151					0	0	0.003610	0	0
FAM131B	9715	broad.mit.edu	37	7	143056116	143056116	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:143056116C>T	uc003wct.2	-	4	1892	c.186G>A	c.(184-186)GGG>GGA	p.G62G	FAM131B_uc010loz.2_Silent_p.G30G|FAM131B_uc003wcu.3_Silent_p.G62G|FAM131B_uc010lpa.2_Silent_p.G90G|ZYX_uc011ktd.1_5'Flank	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	62											0	Melanoma(164;0.205)					TCCGTGAGATCCCTATGGGGC	0.587													6	12					0	0	0.001984	0	0
TAS2R60	338398	broad.mit.edu	37	7	143140937	143140937	+	Missense_Mutation	SNP	T	G	G	rs35195910		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:143140937T>G	uc011ktg.1	+	1	392	c.392T>G	c.(391-393)TTC>TGC	p.F131C	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	131	Helical; Name=4; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					CCTGTCTTCTTCTGGCTAAAG	0.493													127	72					0	0	0.003610	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141325	143141325	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:143141325C>T	uc011ktg.1	+	1	780	c.780C>T	c.(778-780)TTC>TTT	p.F260F	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	260	Extracellular (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TCTCATATTTCCTGTCACTGG	0.493													125	93					0	0	0.003610	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175075	143175075	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:143175075G>A	uc003wdc.1	+	1	110	c.110G>A	c.(109-111)CGA>CAA	p.R37Q	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	37	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					GAGTGGCTGCGATATGGCAGG	0.557													23	65					0	0	0.002096	0	0
OR2F2	135948	broad.mit.edu	37	7	143632354	143632354	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:143632354G>A	uc011ktv.1	+	1	29	c.29G>A	c.(28-30)AGA>AAA	p.R10K		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					ACGTGGGTGAGAGAATTTATT	0.393													61	60					0	0	0.003610	0	0
OR2A2	442361	broad.mit.edu	37	7	143806811	143806811	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:143806811G>A	uc011ktz.1	+	1	136	c.136G>A	c.(136-138)GGG>AGG	p.G46R		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					GGTCATCTTTGGGATTATCTG	0.507													65	129					0	0	0.003610	0	0
OR2A2	442361	broad.mit.edu	37	7	143807322	143807322	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:143807322C>T	uc011ktz.1	+	1	647	c.647C>T	c.(646-648)TCC>TTC	p.S216F		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					ATTCTGGTCTCCTACATGCAC	0.537													102	59					0	0	0.003610	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146741041	146741041	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:146741041G>A	uc003weu.1	+	4	961	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	149	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GGTCCGGCACGAATTACAGCA	0.423										HNSCC(39;0.1)			35	103					0	0	0.003755	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147914416	147914416	+	Missense_Mutation	SNP	G	A	A	rs143879959		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:147914416G>A	uc003weu.1	+	19	3563	c.3047G>A	c.(3046-3048)CGA>CAA	p.R1016Q		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1016	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATGTGGCTACGATATAACTTT	0.488										HNSCC(39;0.1)			38	96					0	0	0.004289	0	0
ZNF212	7988	broad.mit.edu	37	7	148950696	148950696	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:148950696C>T	uc003wfp.2	+	5	774	c.678C>T	c.(676-678)GGC>GGT	p.G226G		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	226					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			CACAGGAAGGCCCTGCGGATC	0.507													70	35					0	0	0.003610	0	0
SSPO	23145	broad.mit.edu	37	7	149474858	149474858	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:149474858C>T	uc010lpk.2	+	5	657	c.657C>T	c.(655-657)TAC>TAT	p.Y219Y	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	219	VWFD 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCTGCACCTACCTGCTGGCGG	0.682													8	6					0	0	0.004482	0	0
SSPO	23145	broad.mit.edu	37	7	149486319	149486319	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:149486319C>T	uc010lpk.2	+	30	4295	c.4295C>T	c.(4294-4296)GCC>GTC	p.A1432V		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1432	LDL-receptor class A 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTGCCCCTGGCCCTGCTCTGT	0.672													23	16					0	0	0.006320	0	0
SSPO	23145	broad.mit.edu	37	7	149493701	149493701	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:149493701C>T	uc010lpk.2	+	46	6697	c.6697C>T	c.(6697-6699)CTG>TTG	p.L2233L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2233	LDL-receptor class A 8.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ACCGGCACCTCTGTGCCCAGG	0.657													11	18					0	0	0.008291	0	0
ZNF862	643641	broad.mit.edu	37	7	149545301	149545301	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:149545301C>T	uc010lpn.2	+	4	911	c.719C>T	c.(718-720)CCC>CTC	p.P240L	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	240					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						GCAGATTGCCCCATATTCTAC	0.617													15	21					0	0	0.003163	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269557	150269557	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:150269557C>T	uc003whl.2	+	3	481	c.399C>T	c.(397-399)GCC>GCT	p.A133A	GIMAP4_uc011kuu.1_Intron|GIMAP4_uc011kuv.1_Silent_p.A147A	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	133							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGCACAAAGCCACAGAGAAGA	0.483													53	34					0	0	0.003610	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389491	150389491	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:150389491G>A	uc003who.2	+	3	205	c.117G>A	c.(115-117)GGG>GGA	p.G39G	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	39						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTGCTGCAGGGAACAGCATCC	0.512													26	18					0	0	0.005443	0	0
KCNH2	3757	broad.mit.edu	37	7	150649632	150649632	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:150649632C>T	uc003wic.2	-	6	1451	c.1438G>A	c.(1438-1440)GAG>AAG	p.E480K	KCNH2_uc003wib.2_Missense_Mutation_p.E140K|KCNH2_uc011kux.1_Missense_Mutation_p.E384K|KCNH2_uc003wid.2_Missense_Mutation_p.E140K|KCNH2_uc003wie.2_Missense_Mutation_p.E480K	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	480	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity	p.E480E(1)		skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	ACCACCTCCTCGTTGGCATTG	0.597													81	34					0	0	0.003610	0	0
FASTK	10922	broad.mit.edu	37	7	150775013	150775013	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:150775013C>T	uc003wix.1	-	5	1090	c.992G>A	c.(991-993)AGA>AAA	p.R331K	uc011kvf.1_5'Flank|FASTK_uc003wiw.1_Missense_Mutation_p.R92K|FASTK_uc003wiy.1_Missense_Mutation_p.R190K|FASTK_uc003wiz.1_Missense_Mutation_p.R304K|FASTK_uc003wja.1_3'UTR	NM_006712	NP_006703	Q14296	FASTK_HUMAN	Fas-activated serine/threonine kinase isoform 1	331					apoptosis|induction of apoptosis by extracellular signals|regulation of RNA splicing		ATP binding|Fas-activated serine/threonine kinase activity|protein binding			lung(2)|stomach(2)	4			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.0718)|Lung(243;0.138)		GTGCAGGGCTCTGAAGGGCAG	0.607													48	21					0	0	0.003610	0	0
GBX1	2636	broad.mit.edu	37	7	150845828	150845828	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:150845828C>T	uc011kvg.1	-	2	1172	c.940G>A	c.(940-942)GCC>ACC	p.A314T		NM_001098834	NP_001092304	Q14549	GBX1_HUMAN	gastrulation brain homeo box 1	314	Homeobox.					nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTCCACTTGGCCCGTCGATTC	0.537													33	76					0	0	0.003755	0	0
MLL3	58508	broad.mit.edu	37	7	151970823	151970823	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:151970823A>G	uc003wla.2	-	7	1198	c.979T>C	c.(979-981)TGT>CGT	p.C327R		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	327					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGTTCTGGACAAAGCAGGAAG	0.388			N		medulloblastoma								8	229					0	0	0.003080	0	0
PTPRN2	5799	broad.mit.edu	37	7	157414156	157414156	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:157414156C>T	uc003wno.2	-	15	2363	c.2242G>A	c.(2242-2244)GAG>AAG	p.E748K	PTPRN2_uc003wnp.2_Missense_Mutation_p.E731K|PTPRN2_uc003wnq.2_Missense_Mutation_p.E719K|PTPRN2_uc003wnr.2_Missense_Mutation_p.E710K|PTPRN2_uc011kwa.1_Missense_Mutation_p.E771K	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	748	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GCTTCCCACTCCTTCTCCAGC	0.627													171	83					0	0	0.003610	0	0
MYOM2	9172	broad.mit.edu	37	8	1998971	1998971	+	Missense_Mutation	SNP	G	A	A	rs148337899		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:1998971G>A	uc003wpx.3	+	2	229	c.91G>A	c.(91-93)GAA>AAA	p.E31K	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	31					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CCTGCTGGACGAATATGCGTC	0.493													16	16					0	0	0.004990	0	0
MYOM2	9172	broad.mit.edu	37	8	2040179	2040179	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:2040179C>T	uc003wpx.3	+	16	1972	c.1834C>T	c.(1834-1836)CCT>TCT	p.P612S	MYOM2_uc011kwi.1_Missense_Mutation_p.P37S	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	612	Fibronectin type-III 3.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AAAAGTTGTCCCTTCTGCTCC	0.547													102	119					0	0	0.003610	0	0
CSMD1	64478	broad.mit.edu	37	8	2808674	2808674	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:2808674G>A	uc011kwk.1	-	66	10556	c.10166C>T	c.(10165-10167)ACC>ATC	p.T3389I	CSMD1_uc011kwj.1_Missense_Mutation_p.T2703I|CSMD1_uc010lrg.2_Missense_Mutation_p.T1280I	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3389	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTCGCTGAAGGTGGCATTCAC	0.453													16	18					0	0	0.004007	0	0
CSMD1	64478	broad.mit.edu	37	8	2823397	2823397	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:2823397G>A	uc011kwk.1	-	59	9573	c.9183C>T	c.(9181-9183)AGC>AGT	p.S3061S	CSMD1_uc011kwj.1_Silent_p.S2390S|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3061	Extracellular (Potential).|Sushi 24.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TACACTGATAGCTCACAGTCT	0.488													6	11					0	0	0.001984	0	0
CSMD1	64478	broad.mit.edu	37	8	3141826	3141826	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:3141826G>A	uc011kwk.1	-	26	4386	c.3996C>T	c.(3994-3996)ATC>ATT	p.I1332I	CSMD1_uc011kwj.1_Silent_p.I724I|CSMD1_uc003wqe.2_Silent_p.I488I	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1332	Extracellular (Potential).|CUB 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGACCTTGAGGATGTCGTGAG	0.567											OREG0018505	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	18					0	0	0.002780	0	0
CSMD1	64478	broad.mit.edu	37	8	3889560	3889560	+	Silent	SNP	C	T	T	rs111253069		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:3889560C>T	uc011kwk.1	-	4	867	c.477G>A	c.(475-477)ACG>ACA	p.T159T		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	159	Extracellular (Potential).|Sushi 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGTTGAATCTCGTTCCATGCA	0.458													27	35					0	0	0.007291	0	0
DEFA5	1670	broad.mit.edu	37	8	6914077	6914077	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:6914077C>T	uc003wra.1	-	1	183	c.143G>A	c.(142-144)GGA>GAA	p.G48E		NM_021010	NP_066290	Q01523	DEF5_HUMAN	defensin, alpha 5 preproprotein	48					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		GAGTCCATTTCCTGCAAAGGA	0.433													56	58					0	0	0.003610	0	0
RP1L1	94137	broad.mit.edu	37	8	10464818	10464818	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:10464818C>T	uc003wtc.2	-	4	7019	c.6790G>A	c.(6790-6792)GAG>AAG	p.E2264K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2264					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TCAGAAGCCTCCTCAGATTGG	0.612													45	47					0	0	0.003610	0	0
RP1L1	94137	broad.mit.edu	37	8	10465880	10465880	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:10465880C>T	uc003wtc.2	-	4	5957	c.5728G>A	c.(5728-5730)GAG>AAG	p.E1910K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1910					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTTTCTGCCTCCGGGGCTTCT	0.607													79	101					0	0	0.003610	0	0
RP1L1	94137	broad.mit.edu	37	8	10467103	10467103	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:10467103C>T	uc003wtc.2	-	4	4734	c.4505G>A	c.(4504-4506)AGG>AAG	p.R1502K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1502					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CGAAGAGCTCCTCTCTGCAGC	0.647													23	18					0	0	0.002780	0	0
C8orf74	203076	broad.mit.edu	37	8	10557840	10557840	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:10557840G>A	uc003wtd.1	+	4	773	c.744G>A	c.(742-744)TTG>TTA	p.L248L	C8orf74_uc003wte.1_RNA	NM_001040032	NP_001035121	Q6P047	CH074_HUMAN	hypothetical protein LOC203076	248											0				COAD - Colon adenocarcinoma(149;0.0811)		TCGCCATCTTGGACCTGAAGC	0.617													38	39					0	0	0.005524	0	0
SGCZ	137868	broad.mit.edu	37	8	13948015	13948015	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:13948015G>A	uc003wwq.2	-	8	1536	c.876C>T	c.(874-876)TAC>TAT	p.Y292Y	SGCZ_uc010lss.2_Silent_p.Y245Y	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	279	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CTGGAGAAAGGTAAAGTTTGC	0.488													40	67					0	0	0.006230	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17053075	17053075	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:17053075G>A	uc003wxe.2	+	4	712	c.315G>A	c.(313-315)CAG>CAA	p.Q105Q		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	105						integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		AAGCCCATCAGGAAGTTCTTA	0.403													27	29					0	0	0.005443	0	0
MTMR7	9108	broad.mit.edu	37	8	17228656	17228656	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:17228656C>T	uc003wxm.2	-	3	439	c.200G>A	c.(199-201)GGA>GAA	p.G67E		NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	67							protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		CAGAGGGCATCCGGTAGCGGT	0.433													37	67					0	0	0.003214	0	0
HR	55806	broad.mit.edu	37	8	21976782	21976783	+	Missense_Mutation	DNP	GG	AA	AA	rs150573552		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:21976782_21976783GG>AA	uc003xas.2	-	15	3656_3657	c.2991_2992CC>TT	c.(2989-2994)CACCGG>CATTGG	p.R998W	HR_uc003xat.2_Missense_Mutation_p.R998W	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	998	JmjC.						DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		AGGTGTCCCCGGTGCGGGCTCA	0.465													9	10					0	0	0.004672	0	0
BMP1	649	broad.mit.edu	37	8	22049630	22049630	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:22049630C>T	uc003xbg.2	+	9	1390	c.1146C>T	c.(1144-1146)GTC>GTT	p.V382V	BMP1_uc003xba.2_Silent_p.V382V|BMP1_uc003xbb.2_Silent_p.V382V|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_Silent_p.V131V|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_Silent_p.V131V|BMP1_uc011kzc.1_Silent_p.V131V|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	382	CUB 1.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		ATGTGGAGGTCCGAGATGGCT	0.612													27	37					0	0	0.007291	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256445	24256445	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:24256445G>A	uc003xdz.2	+	9	1041	c.821G>A	c.(820-822)GGG>GAG	p.G274E	ADAMDEC1_uc010lub.2_Missense_Mutation_p.G195E|ADAMDEC1_uc011lab.1_Missense_Mutation_p.G195E	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	274	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TGGTCTGATGGGGATAAGATA	0.443													20	41					0	0	0.001882	0	0
ADAM7	8756	broad.mit.edu	37	8	24350600	24350600	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:24350600C>T	uc003xeb.2	+	16	1813	c.1700C>T	c.(1699-1701)TCC>TTC	p.S567F	ADAM7_uc003xec.2_Missense_Mutation_p.S339F	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	567	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GGGGAGCTTTCCTCTCTCCTT	0.393													27	35					0	0	0.009535	0	0
TEX15	56154	broad.mit.edu	37	8	30705003	30705003	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:30705003C>T	uc003xil.2	-	1	1531	c.1531G>A	c.(1531-1533)GAA>AAA	p.E511K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	511										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTGAAATTTTCGTTTGTATGA	0.303													38	46					0	0	0.004878	0	0
UNC5D	137970	broad.mit.edu	37	8	35406841	35406841	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:35406841C>T	uc003xjr.1	+	2	463	c.135C>T	c.(133-135)TCC>TCT	p.S45S	UNC5D_uc003xjs.1_Silent_p.S40S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	45	Extracellular (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TTCCCGAATCCATCCCATCAG	0.473													31	36					0	0	0.002836	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38157053	38157053	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:38157053G>A	uc003xli.2	-	15	3185	c.2667C>T	c.(2665-2667)TCC>TCT	p.S889S	WHSC1L1_uc011lbm.1_Silent_p.S889S|WHSC1L1_uc010lwe.2_Intron	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	889	PHD-type 3.				cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			GTAGGTAGTGGGACTTATAGG	0.398			T	NUP98	AML								21	25					0	0	0.010504	0	0
PLEKHA2	59339	broad.mit.edu	37	8	38808425	38808425	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:38808425C>T	uc003xmi.3	+	6	637	c.403C>T	c.(403-405)CCT>TCT	p.P135S	PLEKHA2_uc011lce.1_Missense_Mutation_p.P85S	NM_021623	NP_067636	Q9HB19	PKHA2_HUMAN	pleckstrin homology domain containing, family A	135					positive regulation of cell-matrix adhesion	cytoplasm|nucleus|plasma membrane|protein complex	fibronectin binding|laminin binding				0		all_lung(54;0.0413)|Lung NSC(58;0.115)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;4.68e-08)|COAD - Colon adenocarcinoma(9;0.235)			CTTAGCAGCTCCTCCAGCCCT	0.577													18	24					0	0	0.006122	0	0
ADAM18	8749	broad.mit.edu	37	8	39496010	39496010	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:39496010G>A	uc003xni.2	+	10	854	c.854G>A	c.(853-855)GGA>GAA	p.G285E	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.G261E	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	285	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			AAATATGTGGGAGCAACATTT	0.289													13	15					0	0	0.003163	0	0
ANK1	286	broad.mit.edu	37	8	41554074	41554074	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:41554074C>T	uc003xok.2	-	26	2851	c.2767G>A	c.(2767-2769)GGT>AGT	p.G923S	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.G239S|ANK1_uc003xoi.2_Missense_Mutation_p.G923S|ANK1_uc003xoj.2_Missense_Mutation_p.G923S|ANK1_uc003xol.2_Missense_Mutation_p.G923S|ANK1_uc003xom.2_Missense_Mutation_p.G964S	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	923	ZU5.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			ATGGAACCACCCCGGGCGTCA	0.647													15	11					0	0	0.004007	0	0
SGK196	84197	broad.mit.edu	37	8	42977840	42977840	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:42977840C>T	uc003xpw.2	+	5	1132	c.873C>T	c.(871-873)TTC>TTT	p.F291F		NM_032237	NP_115613	Q9H5K3	SG196_HUMAN	protein kinase-like protein SgK196	291	Protein kinase.					integral to membrane	ATP binding|protein kinase activity				0						TCTCCAGTTTCCTTCTGGGGC	0.483													24	39					0	0	0.003330	0	0
PRKDC	5591	broad.mit.edu	37	8	48707049	48707049	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:48707049G>A	uc003xqi.2	-	75	10529	c.10472C>T	c.(10471-10473)CCC>CTC	p.P3491L	PRKDC_uc003xqj.2_Missense_Mutation_p.P3491L|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3491	FAT.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CTGCCAGCAGGGAACGGAAGA	0.418								NHEJ					10	17					0	0	0.000978	0	0
PXDNL	137902	broad.mit.edu	37	8	52284457	52284457	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:52284457G>A	uc003xqu.3	-	19	3978	c.3877C>T	c.(3877-3879)CGA>TGA	p.R1293*	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1293					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TGCCACACTCGCAGGTCCACC	0.473													10	17					0	0	0.008291	0	0
PXDNL	137902	broad.mit.edu	37	8	52359630	52359630	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:52359630C>T	uc003xqu.3	-	12	1560	c.1459G>A	c.(1459-1461)GAA>AAA	p.E487K		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	487	Ig-like C2-type 3.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GCTTGACATTCATATTGGCCT	0.468													73	77					0	0	0.003610	0	0
ST18	9705	broad.mit.edu	37	8	53071640	53071640	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:53071640G>A	uc003xqz.2	-	10	1780	c.1624C>T	c.(1624-1626)CCT>TCT	p.P542S	ST18_uc011ldq.1_Missense_Mutation_p.P189S|ST18_uc011ldr.1_Missense_Mutation_p.P507S|ST18_uc011lds.1_Missense_Mutation_p.P447S|ST18_uc003xra.2_Missense_Mutation_p.P542S|ST18_uc003xrb.2_Missense_Mutation_p.P542S	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	542						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				AGTCGATTAGGAAATTTCACT	0.438													37	45					0	0	0.004289	0	0
ST18	9705	broad.mit.edu	37	8	53084939	53084939	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:53084939C>T	uc003xqz.2	-	5	638	c.482G>A	c.(481-483)AGC>AAC	p.S161N	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.S126N|ST18_uc011lds.1_Missense_Mutation_p.S66N|ST18_uc003xra.2_Missense_Mutation_p.S161N|ST18_uc003xrb.2_Missense_Mutation_p.S161N	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	161						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TGCTTCATCGCTCTCTGCTTT	0.388													40	49					0	0	0.009718	0	0
SOX17	64321	broad.mit.edu	37	8	55370970	55370970	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:55370970C>T	uc003xsb.3	+	1	476	c.272C>T	c.(271-273)CCA>CTA	p.P91L		NM_022454	NP_071899	Q9H6I2	SOX17_HUMAN	SRY-box 17	91	HMG box.				angiogenesis|cardiac cell fate determination|endocardial cell differentiation|endocardium formation|endoderm formation|heart formation|heart looping|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|outflow tract morphogenesis|positive regulation of transcription, DNA-dependent|protein destabilization|protein stabilization|regulation of embryonic development|renal system development|vasculogenesis|Wnt receptor signaling pathway	transcription factor complex	beta-catenin binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			lung(1)	1		Lung NSC(129;0.109)|all_epithelial(80;0.176)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;1.9e-07)|Epithelial(17;1.7e-05)|all cancers(17;0.000159)			CAGCAGAATCCAGACCTGCAC	0.662													17	19					0	0	0.008871	0	0
RP1	6101	broad.mit.edu	37	8	55542052	55542052	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:55542052C>T	uc003xsd.1	+	4	5758	c.5610C>T	c.(5608-5610)TCC>TCT	p.S1870S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1870					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCACTCATTCCTTTATTTCTG	0.408													22	30					0	0	0.002299	0	0
SDR16C5	195814	broad.mit.edu	37	8	57221505	57221505	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:57221505C>T	uc003xsy.1	-	4	1185	c.547G>A	c.(547-549)GGA>AGA	p.G183R	SDR16C5_uc010lyk.1_Missense_Mutation_p.G183R|SDR16C5_uc010lyl.1_Missense_Mutation_p.G139R	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	183					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CCATTTACTCCACTTAATCCA	0.348													39	28					0	0	0.008740	0	0
CLVS1	157807	broad.mit.edu	37	8	62289259	62289259	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:62289259T>A	uc003xuh.2	+	3	875	c.551T>A	c.(550-552)ATA>AAA	p.I184K	CLVS1_uc003xug.2_3'UTR|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.I184K	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	184	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						ATTTTAATTATAGACTGGAGT	0.428													36	30					0	0	0.004878	0	0
PREX2	80243	broad.mit.edu	37	8	69032465	69032465	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:69032465C>T	uc003xxv.1	+	29	3566	c.3539C>T	c.(3538-3540)GCT>GTT	p.A1180V		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1180					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AAAGGGCAGGCTGTTGTGAGG	0.383													57	62					0	0	0.003610	0	0
PREX2	80243	broad.mit.edu	37	8	69136846	69136846	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:69136846C>T	uc003xxv.1	+	39	4787	c.4760C>T	c.(4759-4761)CCA>CTA	p.P1587L		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1587					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GACCGGACTCCACAGTCTGCA	0.493													19	25					0	0	0.008871	0	0
C8orf34	116328	broad.mit.edu	37	8	69351778	69351778	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:69351778C>T	uc010lyz.2	+	2	163	c.114C>T	c.(112-114)ATC>ATT	p.I38I	C8orf34_uc010lyx.1_Silent_p.I38I|C8orf34_uc010lyy.1_Silent_p.I38I|C8orf34_uc003xyb.2_Silent_p.I13I	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	38					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			ACCAGCCAATCCCATTTCTCA	0.373													18	28					0	0	0.002299	0	0
XKR9	389668	broad.mit.edu	37	8	71646647	71646647	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:71646647C>T	uc003xyq.2	+	5	1644	c.1110C>T	c.(1108-1110)TTC>TTT	p.F370F	XKR9_uc010lze.2_Silent_p.F370F|XKR9_uc010lzd.2_Silent_p.F238F	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	370						integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			TGAGATATTTCCTAATGGAAT	0.294													14	21					0	0	0.004007	0	0
KCNB2	9312	broad.mit.edu	37	8	73849880	73849880	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:73849880G>A	uc003xzb.2	+	3	2878	c.2290G>A	c.(2290-2292)GGA>AGA	p.G764R		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	764	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CCCCTCCCAGGGAGACAGACC	0.582													33	48					0	0	0.003271	0	0
HNF4G	3174	broad.mit.edu	37	8	76465357	76465357	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:76465357G>A	uc003yaq.2	+	6	699	c.429G>A	c.(427-429)ATG>ATA	p.M143I	HNF4G_uc003yar.2_Missense_Mutation_p.M180I	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	143					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			GTGAATCTATGAAACAGCAGC	0.368													38	45					0	0	0.005524	0	0
PMP2	5375	broad.mit.edu	37	8	82356784	82356784	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:82356784C>T	uc003ycb.1	-	3	397	c.299G>A	c.(298-300)GGC>GAC	p.G100D	PMP2_uc010lzv.1_RNA	NM_002677	NP_002668	P02689	MYP2_HUMAN	peripheral myelin protein 2	100						cytoplasm	cholesterol binding|fatty acid binding|transporter activity				0			Epithelial(68;0.186)			TGTCTCTTTGCCATCCCATCT	0.378													18	47					0	0	0.008871	0	0
CHMP4C	92421	broad.mit.edu	37	8	82667641	82667641	+	Silent	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:82667641C>A	uc003ycl.2	+	3	579	c.405C>A	c.(403-405)ATC>ATA	p.I135I		NM_152284	NP_689497	Q96CF2	CHM4C_HUMAN	chromatin modifying protein 4C	135	Intramolecular interaction with C- terminus (By similarity).|Potential.				cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			ovary(2)	2						TGCAAGAGATCACAGAGCAAC	0.338													15	23					1.15088e-07	1.81891e-07	0.004007	1	0
PSKH2	85481	broad.mit.edu	37	8	87076231	87076231	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:87076231C>T	uc011lfy.1	-	2	815	c.815G>A	c.(814-816)AGG>AAG	p.R272K		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	272	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			CAGAATCTTCCTGTAAAGCCT	0.353													17	18					0	0	0.001882	0	0
DECR1	1666	broad.mit.edu	37	8	91057136	91057136	+	Silent	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:91057136T>A	uc003yek.1	+	8	939	c.798T>A	c.(796-798)ATT>ATA	p.I266I	DECR1_uc011lgc.1_Silent_p.I257I|DECR1_uc011lgd.1_RNA	NM_001359	NP_001350	Q16698	DECR_HUMAN	2,4-dienoyl CoA reductase 1 precursor	266					fatty acid beta-oxidation|protein homotetramerization	mitochondrial matrix|nucleus|plasma membrane	2,4-dienoyl-CoA reductase (NADPH) activity|NADPH binding|oxidoreductase activity, acting on NADH or NADPH				0			BRCA - Breast invasive adenocarcinoma(11;0.00953)			TTGGCAGAATTCCCTGTGGTC	0.428													42	54					0	0	0.009718	0	0
SLC26A7	115111	broad.mit.edu	37	8	92346639	92346639	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:92346639G>A	uc003yex.2	+	7	1037	c.759G>A	c.(757-759)AGG>AGA	p.R253R	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Silent_p.R253R|SLC26A7_uc003yfa.2_Silent_p.R253R	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	253	Extracellular (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			AGTTTAAAAGGAAAATTAAAG	0.363													20	33					0	0	0.010504	0	0
CDH17	1015	broad.mit.edu	37	8	95201490	95201490	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:95201490C>T	uc003ygh.2	-	3	200	c.75G>A	c.(73-75)GGG>GGA	p.G25G	CDH17_uc011lgo.1_Silent_p.G25G|CDH17_uc011lgp.1_Silent_p.G25G	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	25	Extracellular (Potential).					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			CACTAAACTTCCCCTCTTGGC	0.398													34	46					0	0	0.005524	0	0
MATN2	4147	broad.mit.edu	37	8	99019805	99019805	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:99019805C>T	uc003yic.2	+	10	1780	c.1549C>T	c.(1549-1551)CGC>TGC	p.R517C	MATN2_uc010mbh.1_Missense_Mutation_p.R476C|MATN2_uc003yid.2_Missense_Mutation_p.R517C|MATN2_uc003yie.1_Missense_Mutation_p.R517C|MATN2_uc010mbi.1_Missense_Mutation_p.R350C|MATN2_uc010mbj.1_Missense_Mutation_p.R16C	NM_002380	NP_002371	O00339	MATN2_HUMAN	matrilin 2 isoform a precursor	517	EGF-like 7.					proteinaceous extracellular matrix	calcium ion binding			ovary(2)	2	Breast(36;1.43e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.244)			ACACGTGCTCCGCAGCGATGG	0.567													28	37					0	0	0.005443	0	0
RNF19A	25897	broad.mit.edu	37	8	101270989	101270989	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:101270989G>A	uc003yjj.1	-	11	2629	c.2312C>T	c.(2311-2313)TCC>TTC	p.S771F	RNF19A_uc003yjk.1_Missense_Mutation_p.S771F	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	771	Interaction with CASR.				microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			CTGATGTGGGGAATTTTCCAG	0.403													24	35					0	0	0.002780	0	0
RNF19A	25897	broad.mit.edu	37	8	101300206	101300206	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:101300206G>A	uc003yjj.1	-	3	514	c.197C>T	c.(196-198)TCA>TTA	p.S66L	RNF19A_uc003yjk.1_Missense_Mutation_p.S66L|RNF19A_uc003yjl.1_Missense_Mutation_p.S66L	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	66					microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			GGAGCCTATTGAAATTCTTCT	0.413													48	50					0	0	0.003610	0	0
NCALD	83988	broad.mit.edu	37	8	102731743	102731743	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:102731743G>A	uc003yke.2	-	2	484	c.115C>T	c.(115-117)CCC>TCC	p.P39S	NCALD_uc003ykf.2_Missense_Mutation_p.P39S|NCALD_uc003ykg.2_Missense_Mutation_p.P39S|NCALD_uc003ykh.2_Missense_Mutation_p.P39S|NCALD_uc003yki.2_Missense_Mutation_p.P39S|NCALD_uc003ykj.2_Missense_Mutation_p.P39S|NCALD_uc003ykk.2_Missense_Mutation_p.P39S|NCALD_uc003ykl.2_Missense_Mutation_p.P39S	NM_032041	NP_114430	P61601	NCALD_HUMAN	neurocalcin delta	39	EF-hand 1.				synaptic transmission|vesicle-mediated transport	clathrin coat of trans-Golgi network vesicle|cytosol	actin binding|calcium ion binding|clathrin binding|tubulin binding				0	all_cancers(14;8.94e-08)|all_epithelial(15;7.03e-10)|Lung NSC(17;1.36e-05)|all_lung(17;2.7e-05)		all cancers(13;1.09e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000699)			TGTCCACTGGGGCAGTCTCTC	0.468													51	65					0	0	0.003610	0	0
RSPO2	340419	broad.mit.edu	37	8	108970382	108970382	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:108970382A>C	uc003yms.2	-	5	1200	c.542T>G	c.(541-543)GTG>GGG	p.V181G	RSPO2_uc003ymq.2_Missense_Mutation_p.V114G|RSPO2_uc003ymr.2_Missense_Mutation_p.V117G	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	181	TSP type-1.				Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			TGTGTCTTTCACTGGCTTTTT	0.438													42	66					0	0	0.003610	0	0
SYBU	55638	broad.mit.edu	37	8	110598301	110598301	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:110598301G>A	uc003ynj.3	-	4	681	c.518C>T	c.(517-519)TCT>TTT	p.S173F	SYBU_uc003yni.3_Missense_Mutation_p.S170F|SYBU_uc003ynk.3_Missense_Mutation_p.S54F|SYBU_uc010mco.2_Missense_Mutation_p.S172F|SYBU_uc003ynl.3_Missense_Mutation_p.S172F|SYBU_uc010mcp.2_Missense_Mutation_p.S173F|SYBU_uc010mcq.2_Missense_Mutation_p.S173F|SYBU_uc003yno.3_Missense_Mutation_p.S54F|SYBU_uc010mcr.2_Missense_Mutation_p.S173F|SYBU_uc003ynm.3_Missense_Mutation_p.S172F|SYBU_uc003ynn.3_Missense_Mutation_p.S172F|SYBU_uc010mcs.2_Missense_Mutation_p.S54F|SYBU_uc010mct.2_Missense_Mutation_p.S173F|SYBU_uc010mcu.2_Missense_Mutation_p.S172F|SYBU_uc003ynp.3_Missense_Mutation_p.S105F|SYBU_uc010mcv.2_Missense_Mutation_p.S173F|SYBU_uc011lhw.1_Missense_Mutation_p.S43F	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	173	Sufficient for interaction with KIF5B.|Ser-rich.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						GCGTGAAGAAGAAGACCGCTT	0.507													5	5					0	0	0.001984	0	0
CSMD3	114788	broad.mit.edu	37	8	113316962	113316962	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:113316962G>A	uc003ynu.2	-	52	8413	c.8254C>T	c.(8254-8256)CCA>TCA	p.P2752S	CSMD3_uc003yns.2_Missense_Mutation_p.P1954S|CSMD3_uc003ynt.2_Missense_Mutation_p.P2712S|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2752	Extracellular (Potential).|Sushi 16.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGGCAATATGGTCTTTCATTT	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			21	29					0	0	0.002780	0	0
CSMD3	114788	broad.mit.edu	37	8	113529451	113529451	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:113529451G>A	uc003ynu.2	-	28	4727	c.4568C>T	c.(4567-4569)TCT>TTT	p.S1523F	CSMD3_uc003yns.2_Missense_Mutation_p.S795F|CSMD3_uc003ynt.2_Missense_Mutation_p.S1483F|CSMD3_uc011lhx.1_Missense_Mutation_p.S1419F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1523	Extracellular (Potential).|CUB 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGTGGCAACAGAACCTATCAA	0.393										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			12	11					0	0	0.000978	0	0
MAL2	114569	broad.mit.edu	37	8	120233971	120233971	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:120233971C>T	uc003yop.2	+	3	379	c.277C>T	c.(277-279)CAA>TAA	p.Q93*		NM_052886	NP_443118	Q969L2	MAL2_HUMAN	MAL2 proteolipid protein	93	Cytoplasmic (Potential).|MARVEL.					apical plasma membrane|endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding				0	all_cancers(13;1.91e-26)|Lung NSC(37;8.61e-08)|Ovarian(258;0.018)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.000967)			CATGGTGGCTCAAATTGATGC	0.438													48	48					0	0	0.003610	0	0
FAM83A	84985	broad.mit.edu	37	8	124219538	124219538	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:124219538C>T	uc003ypv.2	+	5	2929	c.915C>T	c.(913-915)GTC>GTT	p.V305V	FAM83A_uc003ypw.2_Silent_p.V305V|FAM83A_uc003ypy.2_Silent_p.V249V|FAM83A_uc003ypx.2_Silent_p.V305V|FAM83A_uc003ypz.2_Silent_p.V305V	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	305										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CGCGGCTGGTCGCCCCCGTCC	0.692													9	10					0	0	0.006214	0	0
C8orf76	84933	broad.mit.edu	37	8	124243746	124243746	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:124243746G>A	uc003yqc.1	-	4	640	c.609C>T	c.(607-609)TCC>TCT	p.S203S	C8orf76_uc003yqd.2_Silent_p.S171S	NM_032847	NP_116236	Q96K31	CH076_HUMAN	hypothetical protein LOC84933	203							binding			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			GTGGAAAGAAGGATTTGATAG	0.448													45	59					0	0	0.002522	0	0
MIR1207	100302175	broad.mit.edu	37	8	129061414	129061414	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:129061414G>A	hsa-mir-1207|MI0006340	+			c.17G>A			PVT1_uc010mdq.2_Intron|PVT1_uc003ysl.2_Intron																	0						CTGGCAGGGAGGCTGGGAGGG	0.557													26	32					0	0	0.002445	0	0
EFR3A	23167	broad.mit.edu	37	8	133008661	133008661	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:133008661C>T	uc003yte.2	+	19	2275	c.2074C>T	c.(2074-2076)CGA>TGA	p.R692*		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	692						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			AGATGAAGATCGACTTTCTAG	0.308													12	9					0	0	0.001855	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141958	133141959	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:133141958_133141959CC>TT	uc003ytj.2	-	15	2394_2395	c.2169_2170GG>AA	c.(2167-2172)GGGGGA>GGAAGA	p.G724R	KCNQ3_uc010mdt.2_Missense_Mutation_p.G712R	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	724					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GAACTGGGTCCCCCTCGGGGCA	0.579													18	20					0	0	0.004672	0	0
SLA	6503	broad.mit.edu	37	8	134057307	134057307	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:134057307G>A	uc003ytz.2	-	7	1238	c.406C>T	c.(406-408)CGT>TGT	p.R136C	TG_uc003ytw.2_Intron|TG_uc010mdw.2_Intron|TG_uc011ljb.1_Intron|TG_uc011ljc.1_Intron|SLA_uc011lje.1_Missense_Mutation_p.R153C|SLA_uc011ljf.1_Missense_Mutation_p.R28C|SLA_uc011ljg.1_Intron|SLA_uc011ljd.1_Missense_Mutation_p.R176C	NM_001045556	NP_001039021	Q13239	SLAP1_HUMAN	Src-like-adaptor isoform a	136	SH2.					endosome	SH3/SH2 adaptor activity			lung(1)|liver(1)	2	all_epithelial(106;3.51e-21)|Lung NSC(106;4.24e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0279)|Breast(495;0.037)	BRCA - Breast invasive adenocarcinoma(115;0.000701)			TTGGGCAGACGGAAAATGCGG	0.527													22	18					0	0	0.003330	0	0
WISP1	8840	broad.mit.edu	37	8	134225127	134225127	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:134225127G>A	uc003yub.2	+	2	166	c.90G>A	c.(88-90)ACG>ACA	p.T30T	WISP1_uc003yuc.2_Silent_p.T30T|WISP1_uc010meb.2_Intron|WISP1_uc010mec.2_Silent_p.T30T|WISP1_uc010med.2_Intron|WISP1_uc003yud.2_5'Flank	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	30					cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			CAGCCCCTACGACCATGGACT	0.657													7	10					0	0	0.003080	0	0
FAM135B	51059	broad.mit.edu	37	8	139145022	139145022	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:139145022C>T	uc003yuy.2	-	20	4206	c.4035G>A	c.(4033-4035)ATG>ATA	p.M1345I	FAM135B_uc003yux.2_Missense_Mutation_p.M1246I|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1345										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GGTTGTTGATCATTTCTGCAT	0.502										HNSCC(54;0.14)			67	94					0	0	0.003610	0	0
FAM135B	51059	broad.mit.edu	37	8	139153455	139153455	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:139153455G>A	uc003yuy.2	-	17	3947	c.3776C>T	c.(3775-3777)ACC>ATC	p.T1259I	FAM135B_uc003yux.2_Missense_Mutation_p.T1160I|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1259								p.T1259T(1)		ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ACTAACCAGGGTGCTGTTGTT	0.542										HNSCC(54;0.14)			17	19					0	0	0.007413	0	0
FAM135B	51059	broad.mit.edu	37	8	139163757	139163757	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:139163757G>A	uc003yuy.2	-	13	3132	c.2961C>T	c.(2959-2961)CCC>CCT	p.P987P	FAM135B_uc003yux.2_Silent_p.P888P|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.P549P|FAM135B_uc003yvb.2_Silent_p.P549P	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	987										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GGGTCACAGTGGGGCACACAG	0.488										HNSCC(54;0.14)			31	40					0	0	0.008361	0	0
FAM135B	51059	broad.mit.edu	37	8	139164331	139164331	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:139164331G>T	uc003yuy.2	-	13	2558	c.2387C>A	c.(2386-2388)GCT>GAT	p.A796D	FAM135B_uc003yux.2_Missense_Mutation_p.A697D|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.A358D|FAM135B_uc003yvb.2_Missense_Mutation_p.A358D	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	796										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGAAGGTTCAGCAAAACCTCC	0.522										HNSCC(54;0.14)			23	28					1.64293e-13	2.6074e-13	0.003330	1	0
FAM135B	51059	broad.mit.edu	37	8	139164633	139164633	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:139164633G>A	uc003yuy.2	-	13	2256	c.2085C>T	c.(2083-2085)GTC>GTT	p.V695V	FAM135B_uc003yux.2_Silent_p.V596V|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.V257V|FAM135B_uc003yvb.2_Silent_p.V257V	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	695										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CTGACCAGGCGACGGAGCTTG	0.552										HNSCC(54;0.14)			20	30					0	0	0.007413	0	0
FAM135B	51059	broad.mit.edu	37	8	139190910	139190910	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:139190910G>A	uc003yuy.2	-	10	1068	c.897C>T	c.(895-897)ATC>ATT	p.I299I	FAM135B_uc003yux.2_Silent_p.I200I|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	299										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TCTGCTCAGCGATCTTCTCTG	0.502										HNSCC(54;0.14)			7	28					0	0	0.006214	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141461210	141461210	+	Missense_Mutation	SNP	G	A	A	rs139631202	byFrequency	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:141461210G>A	uc003yvj.2	-	2	397	c.263C>T	c.(262-264)TCG>TTG	p.S88L	TRAPPC9_uc003yvh.2_Missense_Mutation_p.S186L|TRAPPC9_uc003yvi.1_Missense_Mutation_p.S88L	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	88					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						GTCCTTGGCCGAGAAGCAGTC	0.577													19	39					0	0	0.002299	0	0
DENND3	22898	broad.mit.edu	37	8	142186849	142186849	+	Missense_Mutation	SNP	G	A	A	rs112917986		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:142186849G>A	uc003yvy.2	+	15	2733	c.2455G>A	c.(2455-2457)GAT>AAT	p.D819N	DENND3_uc010mep.2_Missense_Mutation_p.D780N	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	819										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GAAGCTGGCCGATGACCACAA	0.602													30	34					0	0	0.002096	0	0
CYP11B1	1584	broad.mit.edu	37	8	143960499	143960499	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:143960499G>A	uc003yxi.2	-	2	351	c.344C>T	c.(343-345)CCC>CTC	p.P115L	CYP11B1_uc003yxh.2_5'Flank|CYP11B1_uc003yxj.2_Missense_Mutation_p.P115L|CYP11B1_uc010mey.2_Missense_Mutation_p.P160L	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	115					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	GGCCACCCAGGGCTCCAGGCT	0.617									Familial_Hyperaldosteronism_type_I				15	16					0	0	0.003163	0	0
RHPN1	114822	broad.mit.edu	37	8	144463858	144463858	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:144463858C>T	uc003yyb.2	+	13	1738	c.1605C>T	c.(1603-1605)ATC>ATT	p.I535I		NM_052924	NP_443156	Q8TCX5	RHPN1_HUMAN	rhophilin 1	560	PDZ.				signal transduction	intracellular				large_intestine(1)	1	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.156)			CTGTCCTCATCGCTGCCGTCA	0.701													5	9					0	0	0.001168	0	0
EPPK1	83481	broad.mit.edu	37	8	144942083	144942083	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:144942083C>T	uc003zaa.1	-	1	5352	c.5339G>A	c.(5338-5340)AGA>AAA	p.R1780K		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1780						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TTTTGCAGTTCTGGATTGCAA	0.532													17	27					0	0	0.004007	0	0
ZNF34	80778	broad.mit.edu	37	8	145998914	145998914	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:145998914G>A	uc003zdy.3	-	6	1522	c.1420C>T	c.(1420-1422)CCC>TCC	p.P474S	ZNF34_uc010mgb.2_Missense_Mutation_p.P371S|ZNF34_uc003zdx.3_Missense_Mutation_p.P453S	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	474					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		CACTTGTAGGGCTTCTCTCCT	0.537													22	15					0	0	0.003954	0	0
TMED10P1	286102	broad.mit.edu	37	8	146220637	146220637	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr8:146220637G>A	uc003zey.2	+	1	387	c.366G>A	c.(364-366)GTG>GTA	p.V122V	ZNF252_uc003zew.3_Intron|ZNF252_uc011llo.1_Intron	NR_002807				Homo sapiens mRNA for Tmp21-II putative transcribed pseudogene.												0						ACCAACTTGTGATCCTAGACA	0.423													30	38					0	0	0.002836	0	0
SMARCA2	6595	broad.mit.edu	37	9	2088560	2088560	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:2088560C>T	uc003zhc.2	+	19	2929	c.2830C>T	c.(2830-2832)CCA>TCA	p.P944S	SMARCA2_uc003zhd.2_Missense_Mutation_p.P944S|SMARCA2_uc010mha.2_Missense_Mutation_p.P877S	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	944					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		GGTGTTAAGACCATTTTTACT	0.348													92	112					0	0	0.003610	0	0
GLIS3	169792	broad.mit.edu	37	9	3932396	3932396	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:3932396C>T	uc003zhw.1	-	5	1676	c.1482G>A	c.(1480-1482)AAG>AAA	p.K494K	GLIS3_uc003zhx.1_Silent_p.K649K|GLIS3_uc010mhf.1_Silent_p.K43K|GLIS3_uc003zhv.1_RNA|GLIS3_uc003zhy.1_Silent_p.K427K|GLIS3_uc003zhz.1_Silent_p.K427K	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	494	Bipartite nuclear localization signal (Potential).|C2H2-type 5.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		AAGAATGTGCCTTCACATGCT	0.378													52	57					0	0	0.003610	0	0
PPAPDC2	403313	broad.mit.edu	37	9	4663160	4663160	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:4663160C>T	uc003zin.2	+	1	863	c.785C>T	c.(784-786)GCT>GTT	p.A262V	C9orf68_uc003zik.2_Intron|C9orf68_uc003zil.2_Intron|C9orf68_uc010mhj.2_Intron|C9orf68_uc011lly.1_Intron|C9orf68_uc011llz.1_Intron|C9orf68_uc003zim.2_Intron	NM_203453	NP_982278	Q8IY26	PPAC2_HUMAN	phosphatidic acid phosphatase type 2 domain	262	Helical; (Potential).					integral to membrane	hydrolase activity				0	all_hematologic(13;0.137)	Breast(48;0.238)		GBM - Glioblastoma multiforme(50;0.026)		ACCGACGTAGCTTTTGGCTTT	0.552													35	42					0	0	0.003271	0	0
CER1	9350	broad.mit.edu	37	9	14722376	14722376	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:14722376C>T	uc003zlj.2	-	1	340	c.295G>A	c.(295-297)GAC>AAC	p.D99N		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	99					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		CTATCTGAGTCCCTGGATGGA	0.537													30	17					0	0	0.006320	0	0
FREM1	158326	broad.mit.edu	37	9	14797617	14797617	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:14797617C>T	uc003zlm.2	-	21	4308	c.3718G>A	c.(3718-3720)GAT>AAT	p.D1240N	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1240	CSPG 8.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCTGAGTCATCATGCATGTAC	0.353													60	93					0	0	0.003610	0	0
FREM1	158326	broad.mit.edu	37	9	14857629	14857629	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:14857629C>T	uc003zlm.2	-	5	1340	c.750G>A	c.(748-750)CTG>CTA	p.L250L	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	250					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AAGGGGGATCCAGATGCTGAT	0.478													48	68					0	0	0.003610	0	0
FREM1	158326	broad.mit.edu	37	9	14859410	14859410	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:14859410G>A	uc003zlm.2	-	4	992	c.402C>T	c.(400-402)ATC>ATT	p.I134I	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	134					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCATATGGATGATGTTACAGT	0.408													64	95					0	0	0.003610	0	0
MLLT3	4300	broad.mit.edu	37	9	20414405	20414405	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:20414405G>A	uc003zoe.2	-	5	698	c.439C>T	c.(439-441)CAT>TAT	p.H147Y	MLLT3_uc011lne.1_Missense_Mutation_p.H115Y|MLLT3_uc011lnf.1_Missense_Mutation_p.H144Y|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.H115Y	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	147					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		ctgctgGTATGAATACTCCTA	0.184			T	MLL	ALL								11	22					0	0	0.008291	0	0
ACO1	48	broad.mit.edu	37	9	32419074	32419074	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:32419074C>T	uc003zqw.3	+	7	852	c.697C>T	c.(697-699)CAG>TAG	p.Q233*	ACO1_uc010mjh.1_Nonsense_Mutation_p.Q67*|ACO1_uc003zqx.3_Nonsense_Mutation_p.Q233*|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	233					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		CATGCTGGGTCAGCCAATCAG	0.512													22	21					0	0	0.001882	0	0
TAF1L	138474	broad.mit.edu	37	9	32632418	32632418	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:32632418C>T	uc003zrg.1	-	1	3250	c.3160G>A	c.(3160-3162)GAA>AAA	p.E1054K	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1054					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TGAGCCTGTTCTGTTGACATT	0.473													97	105					0	0	0.003610	0	0
TAF1L	138474	broad.mit.edu	37	9	32634574	32634574	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:32634574G>A	uc003zrg.1	-	1	1094	c.1004C>T	c.(1003-1005)CCT>CTT	p.P335L	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	335					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GGACTCCACAGGAACCATCAT	0.493													39	54					0	0	0.006999	0	0
TAF1L	138474	broad.mit.edu	37	9	32635000	32635000	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:32635000G>A	uc003zrg.1	-	1	668	c.578C>T	c.(577-579)TCC>TTC	p.S193F	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	193					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GGCCAAAAAGGAAGGGGCAAT	0.478													26	32					0	0	0.005443	0	0
ANXA2P2	304	broad.mit.edu	37	9	33624580	33624580	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:33624580G>A	uc010mjx.2	+	1	358	c.309G>A	c.(307-309)TTG>TTA	p.L103L		NM_004039	NP_004030			annexin A2 isoform 2												0						TGGGCCTATTGAAGACACCTG	0.488											OREG0019140	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	36					0	0	0.003610	0	0
KIAA1045	23349	broad.mit.edu	37	9	34978046	34978046	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:34978046G>A	uc003zvq.2	+	8	1319	c.1141G>A	c.(1141-1143)GTC>ATC	p.V381I	KIAA1045_uc003zvr.2_Missense_Mutation_p.V381I	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	381							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			GCAAGAGAATGTCCTCTACAT	0.557													58	60					0	0	0.003610	0	0
CA9	768	broad.mit.edu	37	9	35675809	35675809	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:35675809C>T	uc003zxo.3	+	3	527	c.485C>T	c.(484-486)TCC>TTC	p.S162F	C9orf100_uc003zxl.2_RNA|CA9_uc003zxp.3_Missense_Mutation_p.S162F	NM_001216	NP_001207	Q16790	CAH9_HUMAN	carbonic anhydrase IX precursor	162	Extracellular.|Catalytic.				one-carbon metabolic process	integral to membrane|microvillus membrane|nucleolus	carbonate dehydratase activity|zinc ion binding			ovary(4)|skin(1)	5	all_epithelial(49;0.217)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CGCTTCCAGTCCCCGGTGGAT	0.711													7	12					0	0	0.003080	0	0
CA9	768	broad.mit.edu	37	9	35680799	35680799	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:35680799C>T	uc003zxo.3	+	10	1329	c.1287C>T	c.(1285-1287)GTC>GTT	p.V429V	CA9_uc003zxp.3_Silent_p.V420V	NM_001216	NP_001207	Q16790	CAH9_HUMAN	carbonic anhydrase IX precursor	429	Helical; (Potential).				one-carbon metabolic process	integral to membrane|microvillus membrane|nucleolus	carbonate dehydratase activity|zinc ion binding			ovary(4)|skin(1)	5	all_epithelial(49;0.217)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TCACCAGCGTCGCGTTCCTTG	0.552													26	38					0	0	0.002096	0	0
TLN1	7094	broad.mit.edu	37	9	35704686	35704686	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:35704686C>A	uc003zxt.2	-	44	6214	c.5860G>T	c.(5860-5862)GCC>TCC	p.A1954S		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1954					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			ACTCTCCGGGCACACTCTATG	0.612													19	22					7.41877e-09	1.17413e-08	0.001882	1	0
FBXO10	26267	broad.mit.edu	37	9	37537215	37537215	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:37537215G>A	uc004aab.2	-	3	1360	c.1311C>T	c.(1309-1311)TTC>TTT	p.F437F	FBXO10_uc004aac.2_Silent_p.F453F|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	437	PbH1 3.					ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		TCCCGTCCCGGAAGAGGCACT	0.587													21	22					0	0	0.010504	0	0
ALDH1B1	219	broad.mit.edu	37	9	38397029	38397029	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:38397029G>C	uc004aay.2	+	2	1396	c.1284G>C	c.(1282-1284)AAG>AAC	p.K428N		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	428					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	TCAAGTTCAAGAAGATTGAGG	0.537													15	14					0	0	0.002450	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39171436	39171436	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:39171436G>A	uc004abi.2	-	8	1502	c.1263C>T	c.(1261-1263)CTC>CTT	p.L421L	CNTNAP3_uc004abj.2_Silent_p.L421L|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Silent_p.L421L|CNTNAP3_uc011lqs.1_Silent_p.L421L|CNTNAP3_uc004abl.1_Silent_p.L333L	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	421	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CCTTAAGAAAGAGGACGAAAC	0.478													38	47					0	0	0.006999	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627116	43627116	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:43627116G>A	uc011lrb.1	-	4	1600	c.1571C>T	c.(1570-1572)TCG>TTG	p.S524L		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	524						integral to membrane					0						TTTATTCTGCGATGCAGGGCA	0.507													135	15					0	0	0.003610	0	0
APBA1	320	broad.mit.edu	37	9	72131823	72131823	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:72131823C>T	uc004ahh.2	-	2	580	c.304G>A	c.(304-306)GAC>AAC	p.D102N		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	102					axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						TCGTAGCCGTCGCGGGCCGCG	0.716													5	0					0	0	0.001984	0	0
RORB	6096	broad.mit.edu	37	9	77300446	77300446	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:77300446A>G	uc004aji.2	+	10	1374	c.1325A>G	c.(1324-1326)AAG>AGG	p.K442R	RORB_uc004ajh.2_Missense_Mutation_p.K431R	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	442	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CAGGTATTTAAGCAATCTCAT	0.478													49	4					0	0	0.003610	0	0
TRPM6	140803	broad.mit.edu	37	9	77339641	77339641	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:77339641G>A	uc004ajl.1	-	39	6195	c.5957C>T	c.(5956-5958)TCC>TTC	p.S1986F	TRPM6_uc004ajk.1_Missense_Mutation_p.S1981F|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.S937F|TRPM6_uc010mpd.1_Missense_Mutation_p.S819F|TRPM6_uc010mpe.1_Missense_Mutation_p.S533F|TRPM6_uc004ajj.1_Missense_Mutation_p.S942F	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1986	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CCTTTCAGGGGAATAGTCATT	0.413													30	7					0	0	0.009535	0	0
Unknown	0	broad.mit.edu	37	9	78938195	78938195	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:78938195G>A	uc004akc.1	+	4	725	c.505G>A	c.(505-507)GAG>AAG	p.E169K						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		GGAGACTAAGGAGTGCAGAGG	0.507													19	2					0	0	0.010504	0	0
TLE4	7091	broad.mit.edu	37	9	82324555	82324555	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:82324555C>T	uc004ald.2	+	15	2205	c.1356C>T	c.(1354-1356)CAC>CAT	p.H452H	TLE4_uc004alc.2_Silent_p.H427H|TLE4_uc010mpr.2_Silent_p.H306H|TLE4_uc004ale.2_Silent_p.H64H|TLE4_uc011lsq.1_Silent_p.H395H|TLE4_uc010mps.2_Silent_p.H351H|TLE4_uc004alf.2_Silent_p.H366H	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						TTGATCCACACCATCACATGC	0.413													21	4					0	0	0.002780	0	0
FRMD3	257019	broad.mit.edu	37	9	85863229	85863229	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:85863229G>A	uc004ams.1	-	14	1600	c.1398C>T	c.(1396-1398)CTC>CTT	p.L466L	FRMD3_uc004amr.1_Silent_p.L452L|FRMD3_uc004amq.1_Silent_p.L123L	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	466						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						GACAGTCAAAGAGCATGTCAA	0.438													44	7					0	0	0.003610	0	0
SEMA4D	10507	broad.mit.edu	37	9	92002362	92002362	+	Silent	SNP	G	A	A	rs146117514		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:92002362G>A	uc004aqo.1	-	14	1841	c.1269C>T	c.(1267-1269)ATC>ATT	p.I423I	SEMA4D_uc011ltm.1_Silent_p.I423I|SEMA4D_uc011ltn.1_RNA|SEMA4D_uc011lto.1_RNA|SEMA4D_uc004aqp.1_Silent_p.I421I	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	423	Sema.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						GGTCCACCACGATCTGGGTGT	0.532													29	4					0	0	0.008361	0	0
IARS	3376	broad.mit.edu	37	9	95043111	95043111	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:95043111A>G	uc004art.1	-	7	919	c.662T>C	c.(661-663)GTT>GCT	p.V221A	IARS_uc004ars.1_Missense_Mutation_p.V66A|IARS_uc004aru.3_Missense_Mutation_p.V221A|IARS_uc010mqr.2_Missense_Mutation_p.V111A|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	221					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	TGTCCAAGCAACTAAAGATAC	0.368													24	1					0	0	0.003954	0	0
ASPN	54829	broad.mit.edu	37	9	95227269	95227269	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:95227269C>T	uc004ase.1	-	5	888	c.644G>A	c.(643-645)GGG>GAG	p.G215E	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ASPN_uc010mqy.1_Missense_Mutation_p.G215E	NM_017680	NP_060150	Q9BXN1	ASPN_HUMAN	asporin precursor	215	LRR 5.				bone mineralization|negative regulation of tooth mineralization|negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	calcium ion binding				0						TTCAAATGCCCCTGGCTCTAT	0.398													83	9					0	0	0.003610	0	0
KIAA1529	57653	broad.mit.edu	37	9	100092936	100092936	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:100092936G>A	uc011lut.1	+	30	3483	c.2710G>A	c.(2710-2712)GAG>AAG	p.E904K	KIAA1529_uc004axe.1_Missense_Mutation_p.E904K|KIAA1529_uc004axg.1_Missense_Mutation_p.E765K|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Missense_Mutation_p.E89K|KIAA1529_uc011lus.1_Missense_Mutation_p.E722K|KIAA1529_uc010msm.1_RNA|KIAA1529_uc004axf.2_Missense_Mutation_p.E765K|KIAA1529_uc011luv.1_Missense_Mutation_p.E762K	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				AGAAAagaaggaggagtcaga	0.274													6	1					0	0	0.001984	0	0
COL15A1	1306	broad.mit.edu	37	9	101796861	101796861	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:101796861G>A	uc004azb.1	+	17	2280	c.2074G>A	c.(2074-2076)GAA>AAA	p.E692K		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	692	Triple-helical region 2 (COL2).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CTCAGTTGGTGAAAAGGTaaa	0.348													11	2					0	0	0.008291	0	0
BAAT	570	broad.mit.edu	37	9	104133497	104133497	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:104133497A>G	uc010mtd.2	-	2	299	c.190T>C	c.(190-192)TCT>CCT	p.S64P	BAAT_uc004bbd.3_Missense_Mutation_p.S64P	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	64					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	CCAAGTGAAGAAGCATGATTC	0.443													39	6					0	0	0.007835	0	0
KLF4	9314	broad.mit.edu	37	9	110249648	110249648	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:110249648G>T	uc004bdh.2	-	3	1621	c.1000C>A	c.(1000-1002)CAC>AAC	p.H334N	KLF4_uc004bdf.1_Missense_Mutation_p.H293N|KLF4_uc004bdg.2_Missense_Mutation_p.H343N	NM_004235	NP_004226	O43474	KLF4_HUMAN	Kruppel-like factor 4 (gut)	343	Pro-rich.				fat cell differentiation|mesodermal cell fate determination|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|stem cell maintenance|transcription from RNA polymerase II promoter	nucleus	RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor recruiting transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(2)|lung(1)	3						GGCCCCGGGTGGGGATGGAAG	0.652													7	0					8.12818e-05	0.000128403	0.001984	1	0
ACTL7A	10881	broad.mit.edu	37	9	111624630	111624630	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:111624630G>A	uc004bdj.1	+	1	28	c.28G>A	c.(28-30)GGG>AGG	p.G10R		NM_006687	NP_006678	Q9Y615	ACL7A_HUMAN	actin-like 7A	10						cytoplasm|cytoskeleton|protein complex	structural constituent of cytoskeleton				0						AGCAATCATGGGGGATGGGCC	0.597													25	4					0	0	0.004656	0	0
EPB41L4B	54566	broad.mit.edu	37	9	112015767	112015767	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:112015767C>T	uc004bdz.1	-	12	1528	c.1233G>A	c.(1231-1233)AGG>AGA	p.R411R	EPB41L4B_uc004bea.2_Silent_p.R411R	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	411						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						TACTAGGCTTCCTCTCAAAGG	0.398													60	13					0	0	0.003610	0	0
MUSK	4593	broad.mit.edu	37	9	113563105	113563105	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:113563105G>A	uc004bey.2	+	14	2545	c.2447G>A	c.(2446-2448)CGA>CAA	p.R816Q	MUSK_uc004bez.1_Missense_Mutation_p.R396Q	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	816	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TACTACGTGCGAGATGGCAAC	0.557													13	3					0	0	0.004007	0	0
SUSD1	64420	broad.mit.edu	37	9	114804188	114804188	+	Silent	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:114804188A>C	uc004bfu.2	-	16	2243	c.2202T>G	c.(2200-2202)GCT>GCG	p.A734A	SUSD1_uc010mui.2_Missense_Mutation_p.L756R|SUSD1_uc010muj.2_Missense_Mutation_p.L721R	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	734	Helical; (Potential).					integral to membrane	calcium ion binding				0						TGATCACAACAGCCAGGGAAC	0.532													14	0					0	0	0.003163	0	0
BSPRY	54836	broad.mit.edu	37	9	116132362	116132363	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:116132362_116132363CC>TT	uc004bhg.3	+	6	1197_1198	c.1149_1150CC>TT	c.(1147-1152)TTCCCG>TTTTCG	p.P384S	BSPRY_uc010muw.2_3'UTR	NM_017688	NP_060158	Q5W0U4	BSPRY_HUMAN	B-box and SPRY domain containing	384	B30.2/SPRY.				calcium ion transport	cytoplasm|membrane	zinc ion binding			breast(1)	1						ATGTGTCCTTCCCGGGGCCCCT	0.619													30	3					0	0	0.004672	0	0
ORM1	5004	broad.mit.edu	37	9	117085966	117085966	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:117085966C>T	uc004bik.3	+	2	249	c.138C>T	c.(136-138)ATC>ATT	p.I46I	ORM1_uc011lxo.1_Silent_p.I46I	NM_000607	NP_000598	P02763	A1AG1_HUMAN	orosomucoid 1 precursor	46					acute-phase response|regulation of immune system process|transport	extracellular space	protein binding				0		Myeloproliferative disorder(63;0.163)			Acenocoumarol(DB01418)|Alfentanil(DB00802)|Aprindine(DB01429)|Disopyramide(DB00280)|Penbutolol(DB01359)|Phenprocoumon(DB00946)|Quinidine(DB00908)|Tamsulosin(DB00706)	GGTTTTATATCGCATCGGCCT	0.408													28	37					0	0	0.008740	0	0
ASTN2	23245	broad.mit.edu	37	9	119188357	119188357	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:119188357G>A	uc004bjs.1	-	23	3894	c.3793C>T	c.(3793-3795)CTG>TTG	p.L1265L	ASTN2_uc004bjr.1_Silent_p.L1261L|ASTN2_uc004bjt.1_Silent_p.L1214L|ASTN2_uc004bjp.1_Silent_p.L358L|ASTN2_uc004bjq.1_Silent_p.L317L|ASTN2_uc011lxr.1_Silent_p.L317L|ASTN2_uc011lxs.1_Silent_p.L317L|ASTN2_uc011lxt.1_Silent_p.L317L|ASTN2_uc004bjo.1_Silent_p.L46L	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1265	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CGTAGAATCAGGTGGGCCTTC	0.498													20	3					0	0	0.003330	0	0
TLR4	7099	broad.mit.edu	37	9	120476810	120476810	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:120476810C>T	uc004bjz.2	+	3	2695	c.2404C>T	c.(2404-2406)CTG>TTG	p.L802L	TLR4_uc004bka.2_Silent_p.L762L|TLR4_uc004bkb.2_Silent_p.L602L	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	802	Cytoplasmic (Potential).|TIR.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GGACAGTGTCCTGGGGCGGCA	0.552													48	8					0	0	0.003610	0	0
OR1J1	347168	broad.mit.edu	37	9	125239349	125239349	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:125239349T>C	uc011lyu.1	-	1	857	c.857A>G	c.(856-858)AAC>AGC	p.N286S	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						AATGAATGGGTTCAACATGGG	0.323													52	4					0	0	0.003610	0	0
OR1L8	138881	broad.mit.edu	37	9	125330715	125330715	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:125330715G>A	uc004bmp.1	-	1	42	c.42C>T	c.(40-42)ATC>ATT	p.I14I		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						GTCCCAGGAGGATAAACTCGG	0.458													13	1					0	0	0.002450	0	0
OR1B1	347169	broad.mit.edu	37	9	125391515	125391515	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:125391515C>T	uc011lyz.1	-	1	300	c.300G>A	c.(298-300)TTG>TTA	p.L100L		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	100	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGAACTGAGCCAAGCAGCGGG	0.517													15	3					0	0	0.002450	0	0
OR1L3	26735	broad.mit.edu	37	9	125437783	125437783	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:125437783C>T	uc011lzb.1	+	1	375	c.375C>T	c.(373-375)GCC>GCT	p.A125A		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	125	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCTGTGTAGCCATTTGTAACC	0.443													66	3					0	0	0.003610	0	0
OR1L3	26735	broad.mit.edu	37	9	125437934	125437934	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:125437934C>T	uc011lzb.1	+	1	526	c.526C>T	c.(526-528)CAT>TAT	p.H176Y		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTTATCCATCATTTTTTTTG	0.463													89	12					0	0	0.003610	0	0
CRB2	286204	broad.mit.edu	37	9	126132692	126132692	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:126132692C>T	uc004bnx.1	+	7	1452	c.1360C>T	c.(1360-1362)CCA>TCA	p.P454S	CRB2_uc004bnw.1_Missense_Mutation_p.P454S	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	454	Extracellular (Potential).|Laminin G-like 1.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GGCATCAGTGCCAGCTGGTGG	0.612													16	3					0	0	0.006122	0	0
LAMC3	10319	broad.mit.edu	37	9	133907434	133907434	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:133907434G>A	uc004caa.1	+	3	779	c.681G>A	c.(679-681)GAG>GAA	p.E227E		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	227	Laminin N-terminal.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		TGCCCCAGGAGTGGGTCACCA	0.577													49	6					0	0	0.003610	0	0
NUP214	8021	broad.mit.edu	37	9	134073006	134073006	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:134073006T>C	uc004cag.2	+	29	4236	c.4125T>C	c.(4123-4125)ACT>ACC	p.T1375T	NUP214_uc004cah.2_Silent_p.T1365T|NUP214_uc004cai.2_Silent_p.T805T|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Silent_p.T201T|NUP214_uc011mcf.1_Silent_p.T152T|NUP214_uc010mzh.1_5'UTR|NUP214_uc010mzi.1_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1375	Pro/Ser/Thr-rich.|11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		TTAATTTTACTGCCCCCCCGG	0.542			T	DEK|SET|ABL1	AML|T-ALL								43	5					0	0	0.003610	0	0
NTNG2	84628	broad.mit.edu	37	9	135073983	135073983	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:135073983G>A	uc004cbh.2	+	3	1620	c.844G>A	c.(844-846)GAG>AAG	p.E282K		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	282	Laminin N-terminal.				axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		CTCCAACATCGAGGTCATCGG	0.602													16	2					0	0	0.006122	0	0
C9orf171	389799	broad.mit.edu	37	9	135374155	135374155	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:135374155G>A	uc004cbn.2	+	3	425	c.377G>A	c.(376-378)CGA>CAA	p.R126Q	C9orf171_uc004cbo.2_Missense_Mutation_p.R90Q	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	126										ovary(4)|large_intestine(1)	5						CTCTACATCCGAGGGCTTGAC	0.577													10	0					0	0	0.008291	0	0
CEL	1056	broad.mit.edu	37	9	135942235	135942235	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:135942235C>T	uc010naa.1	+	6	705	c.689C>T	c.(688-690)CCC>CTC	p.P230L		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	227					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		ACCCTCTCCCCCTACAACAAG	0.637													29	5					0	0	0.009535	0	0
SARDH	1757	broad.mit.edu	37	9	136584063	136584063	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:136584063C>T	uc004cep.3	-	7	1151	c.1017G>A	c.(1015-1017)GAG>GAA	p.E339E	SARDH_uc004ceo.2_Silent_p.E339E|SARDH_uc011mdn.1_Silent_p.E339E|SARDH_uc011mdo.1_Silent_p.E171E	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	339					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		ATCTTACCTCCTCCCAAAAGA	0.572													18	3					0	0	0.006122	0	0
SARDH	1757	broad.mit.edu	37	9	136584065	136584065	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:136584065C>T	uc004cep.3	-	7	1149	c.1015G>A	c.(1015-1017)GAG>AAG	p.E339K	SARDH_uc004ceo.2_Missense_Mutation_p.E339K|SARDH_uc011mdn.1_Missense_Mutation_p.E339K|SARDH_uc011mdo.1_Missense_Mutation_p.E171K	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	339					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CTTACCTCCTCCCAAAAGATG	0.572													18	3					0	0	0.006122	0	0
SARDH	1757	broad.mit.edu	37	9	136584143	136584143	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:136584143G>A	uc004cep.3	-	7	1071	c.937C>T	c.(937-939)CAT>TAT	p.H313Y	SARDH_uc004ceo.2_Missense_Mutation_p.H313Y|SARDH_uc011mdn.1_Missense_Mutation_p.H313Y|SARDH_uc011mdo.1_Missense_Mutation_p.H145Y	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	313					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GAGGCATCATGATCACGGACA	0.597													25	5					0	0	0.002096	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071154	141071154	+	Missense_Mutation	SNP	T	C	C	rs150819761	by1000genomes	TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr9:141071154T>C	uc004com.2	+	4	818	c.557T>C	c.(556-558)GTC>GCC	p.V186A	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GTGAACATGGTCCCGTTTCCC	0.632													5	24					0	0	0.001168	0	0
CSF2RA	1438	broad.mit.edu	37	X	1409240	1409240	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:1409240G>A	uc010nct.2	+	8	806	c.484G>A	c.(484-486)GAG>AAG	p.E162K	CSF2RA_uc011mhb.1_Missense_Mutation_p.E162K|CSF2RA_uc004cpq.2_Missense_Mutation_p.E162K|CSF2RA_uc004cpn.2_Missense_Mutation_p.E162K|CSF2RA_uc004cpo.2_Missense_Mutation_p.E162K|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.E29K|CSF2RA_uc004cpp.2_Missense_Mutation_p.E162K|CSF2RA_uc010ncv.2_Missense_Mutation_p.E162K|CSF2RA_uc004cpr.2_Missense_Mutation_p.E162K	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	162	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GAGAAGGAGGGAGATCCGGTG	0.259													58	104					0	0	0.003610	0	0
ZBED1	9189	broad.mit.edu	37	X	2408288	2408288	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:2408288G>A	uc004cqg.2	-	2	674	c.473C>T	c.(472-474)CCC>CTC	p.P158L	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Missense_Mutation_p.P158L	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	158						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CTCATACCGGGGGTCGGCCGT	0.662													45	56					0	0	0.003610	0	0
HDHD1A	8226	broad.mit.edu	37	X	6968386	6968386	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:6968386G>A	uc004crv.2	-	4	715	c.638C>T	c.(637-639)TCC>TTC	p.S213F	HDHD1A_uc011mhm.1_Missense_Mutation_p.S236F|HDHD1A_uc011mhn.1_Missense_Mutation_p.S170F|HDHD1A_uc010ndl.2_3'UTR	NM_012080	NP_036212	Q08623	HDHD1_HUMAN	haloacid dehalogenase-like hydrolase domain	213					nucleotide metabolic process		metal ion binding|phosphatase activity				0		Colorectal(8;0.0114)|Medulloblastoma(8;0.184)				GTCCTGCAGGGAATTCAGCAC	0.612													20	14					0	0	0.001882	0	0
STS	412	broad.mit.edu	37	X	7268244	7268244	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:7268244C>T	uc004cry.3	+	10	1939	c.1694C>T	c.(1693-1695)TCC>TTC	p.S565F		NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	565	Lumenal.				female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	TGCTGTCCTTCCACCGGCCTG	0.562									Ichthyosis				14	19					0	0	0.003163	0	0
FAM9A	171482	broad.mit.edu	37	X	8768129	8768129	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:8768129C>T	uc004csg.2	-	2	195	c.84G>A	c.(82-84)ACG>ACA	p.T28T		NM_174951	NP_777611	Q8IZU1	FAM9A_HUMAN	family with sequence similarity 9, member A	28						nucleolus					0		Hepatocellular(5;0.219)				CACCTTCTTTCGTGGCCCCCT	0.642													10	14					0	0	0.004007	0	0
TBL1X	6907	broad.mit.edu	37	X	9659735	9659735	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:9659735G>A	uc010ndq.2	+	8	1101	c.733G>A	c.(733-735)GAT>AAT	p.D245N	TBL1X_uc004csq.3_Missense_Mutation_p.D194N|TBL1X_uc010ndr.2_Missense_Mutation_p.D194N|TBL1X_uc004csr.2_Missense_Mutation_p.D245N|TBL1X_uc004css.2_Missense_Mutation_p.D196N	NM_001139466	NP_001132938	O60907	TBL1X_HUMAN	transducin beta-like 1X isoform a	245	WD 1.				canonical Wnt receptor signaling pathway|cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|sensory perception of sound|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein C-terminus binding|protein domain specific binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Hepatocellular(5;0.000888)				TCCTGTCAGTGATTTGCTAGC	0.542													18	34					0	0	0.001882	0	0
WWC3	55841	broad.mit.edu	37	X	10084537	10084537	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:10084537C>T	uc004csx.3	+	10	1252	c.1054C>T	c.(1054-1056)CAG>TAG	p.Q352*	WWC3_uc010nds.2_Nonsense_Mutation_p.Q16*|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	352	Ser-rich.									ovary(4)	4						CCTCCAGTCCCAGTTAAAAAG	0.418													54	67					0	0	0.003610	0	0
CLCN4	1183	broad.mit.edu	37	X	10181893	10181893	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:10181893C>T	uc004csy.3	+	11	2179	c.1749C>T	c.(1747-1749)TTC>TTT	p.F583F	CLCN4_uc011mid.1_Silent_p.F489F	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	583	Cytoplasmic (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GGTACCCTTTCCTTGACGTGA	0.607													36	32					0	0	0.004289	0	0
MID1	4281	broad.mit.edu	37	X	10463689	10463689	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:10463689C>T	uc004cte.3	-	4	990	c.799G>A	c.(799-801)GAT>AAT	p.D267N	MID1_uc004ctd.3_5'UTR|MID1_uc004ctg.3_Missense_Mutation_p.D267N|MID1_uc004cth.3_Missense_Mutation_p.D229N|MID1_uc004ctk.3_Missense_Mutation_p.D267N|MID1_uc004cti.3_Missense_Mutation_p.D267N|MID1_uc004ctj.3_Missense_Mutation_p.D267N|MID1_uc011mie.1_RNA|MID1_uc004ctm.1_Missense_Mutation_p.D318N|MID1_uc004ctn.1_Missense_Mutation_p.D267N|MID1_uc004cto.1_Missense_Mutation_p.D229N|MID1_uc010ndw.1_5'UTR|MID1_uc004cts.1_Missense_Mutation_p.D34N|MID1_uc004ctt.2_Missense_Mutation_p.D318N|MID1_uc004ctu.2_Missense_Mutation_p.D267N|MID1_uc004ctv.2_Missense_Mutation_p.D280N|MID1_uc004ctw.2_Missense_Mutation_p.D229N|MID1_uc010ndy.1_Intron|MID1_uc004ctc.3_Missense_Mutation_p.D34N|MID1_uc004ctp.1_RNA|MID1_uc004ctq.1_Missense_Mutation_p.D34N|MID1_uc004ctr.1_Missense_Mutation_p.D34N|MID1_uc010ndu.1_Missense_Mutation_p.D34N|MID1_uc010ndv.1_5'UTR|MID1_uc010ndx.1_RNA	NM_033290	NP_150632	O15344	TRI18_HUMAN	midline 1	267					microtubule cytoskeleton organization|pattern specification process|positive regulation of stress-activated MAPK cascade	cytoplasm|microtubule|microtubule associated complex|spindle	ligase activity|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|pancreas(1)	3						ATGAGAAGATCACACTCCTCT	0.383													31	45					0	0	0.007835	0	0
ARHGAP6	395	broad.mit.edu	37	X	11215113	11215113	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:11215113C>T	uc004cup.1	-	3	1625	c.752G>A	c.(751-753)GGA>GAA	p.G251E	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Missense_Mutation_p.G251E|ARHGAP6_uc004cum.1_Missense_Mutation_p.G48E|ARHGAP6_uc004cun.1_Missense_Mutation_p.G71E|ARHGAP6_uc010neb.1_Missense_Mutation_p.G73E|ARHGAP6_uc011mif.1_Missense_Mutation_p.G48E	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	251					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						TCTCTTTTGTCCATCTGTAAA	0.299													11	13					0	0	0.008291	0	0
FRMPD4	9758	broad.mit.edu	37	X	12735962	12735962	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:12735962C>T	uc004cuz.1	+	16	3523	c.3017C>T	c.(3016-3018)TCG>TTG	p.S1006L	FRMPD4_uc011mij.1_Missense_Mutation_p.S998L	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1006					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GAGACTAAGTCGGTCACTGAC	0.537													68	66					0	0	0.003610	0	0
PRPS2	5634	broad.mit.edu	37	X	12827410	12827410	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:12827410G>A	uc004cvb.2	+	3	488	c.364G>A	c.(364-366)GAT>AAT	p.D122N	PRPS2_uc004cva.2_Missense_Mutation_p.D125N|PRPS2_uc010nec.2_Missense_Mutation_p.D58N	NM_002765	NP_002756	P11908	PRPS2_HUMAN	phosphoribosyl pyrophosphate synthetase 2	122					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity				0						GGCTGGGGCGGATCACATCAT	0.398													59	75					0	0	0.003610	0	0
GPM6B	2824	broad.mit.edu	37	X	13834993	13834993	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:13834993C>T	uc004cvz.2	-	1	322	c.31G>A	c.(31-33)GAA>AAA	p.E11K	GPM6B_uc004cvx.2_Intron|GPM6B_uc011min.1_Intron|GPM6B_uc004cwa.2_Intron|GPM6B_uc004cvw.2_Missense_Mutation_p.E11K|GPM6B_uc011mim.1_5'UTR|GPM6B_uc004cvy.2_Missense_Mutation_p.E11K	NM_005278	NP_005269	Q13491	GPM6B_HUMAN	glycoprotein M6B isoform 3	11					cell differentiation|nervous system development	integral to membrane					0						TCAGTATTTTCCTCGGCTGCA	0.478													117	117					0	0	0.003610	0	0
GLRA2	2742	broad.mit.edu	37	X	14708921	14708921	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:14708921C>T	uc010nep.2	+	9	1352	c.1020C>T	c.(1018-1020)TTC>TTT	p.F340F	GLRA2_uc010neq.2_Silent_p.F340F|GLRA2_uc004cwe.3_Silent_p.F340F|GLRA2_uc011mio.1_Silent_p.F251F|GLRA2_uc011mip.1_Silent_p.F318F	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	340	Helical; (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	CGGTGAACTTCGTCTCCAGGC	0.473													51	51					0	0	0.003610	0	0
NHS	4810	broad.mit.edu	37	X	17744328	17744328	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:17744328C>T	uc004cxx.2	+	6	2377	c.2039C>T	c.(2038-2040)TCC>TTC	p.S680F	NHS_uc011mix.1_Missense_Mutation_p.S701F|NHS_uc004cxy.2_Missense_Mutation_p.S524F|NHS_uc004cxz.2_Missense_Mutation_p.S503F|NHS_uc004cya.2_Missense_Mutation_p.S403F	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	680						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					CGGGCAAACTCCTTTACCTCC	0.498													90	127					0	0	0.003610	0	0
RAI2	10742	broad.mit.edu	37	X	17819275	17819275	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:17819275C>T	uc004cyf.2	-	3	1426	c.856G>A	c.(856-858)GAT>AAT	p.D286N	RAI2_uc004cyg.2_Missense_Mutation_p.D286N|RAI2_uc010nfa.2_Missense_Mutation_p.D286N|RAI2_uc004cyh.3_Missense_Mutation_p.D286N|RAI2_uc011miy.1_Missense_Mutation_p.D236N	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	286					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					TTCAGTTCATCTTTTTCCAGA	0.537													88	85					0	0	0.003610	0	0
BEND2	139105	broad.mit.edu	37	X	18209205	18209205	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:18209205C>T	uc004cyj.3	-	8	1358	c.1204G>A	c.(1204-1206)GGG>AGG	p.G402R	BEND2_uc010nfb.2_Missense_Mutation_p.G311R	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	402										ovary(3)|kidney(1)|central_nervous_system(1)	5						CTCATTGTCCCATAACTCATT	0.289													43	44					0	0	0.002522	0	0
BEND2	139105	broad.mit.edu	37	X	18219951	18219951	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:18219951G>A	uc004cyj.3	-	6	1171	c.1017C>T	c.(1015-1017)TTC>TTT	p.F339F	BEND2_uc010nfb.2_Intron	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	339										ovary(3)|kidney(1)|central_nervous_system(1)	5						AGGGAGGGATGAAGACAGATA	0.259													33	45					0	0	0.004878	0	0
GPR64	10149	broad.mit.edu	37	X	19027767	19027767	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:19027767C>T	uc004cyx.2	-	18	1563	c.1399G>A	c.(1399-1401)GCC>ACC	p.A467T	GPR64_uc004cyy.2_Missense_Mutation_p.A464T|GPR64_uc004cyz.2_Missense_Mutation_p.A453T|GPR64_uc004czb.2_Missense_Mutation_p.A467T|GPR64_uc004czc.2_Missense_Mutation_p.A451T|GPR64_uc004czd.2_Missense_Mutation_p.A443T|GPR64_uc004cze.2_Missense_Mutation_p.A437T|GPR64_uc004czf.2_Missense_Mutation_p.A429T|GPR64_uc004cza.2_Missense_Mutation_p.A445T|GPR64_uc004cyw.2_Missense_Mutation_p.A451T|GPR64_uc010nfj.2_Missense_Mutation_p.A437T	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	467	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					GGGTCTTGGGCCACAAAGGTA	0.423													32	44					0	0	0.004289	0	0
MAP7D2	256714	broad.mit.edu	37	X	20034406	20034406	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:20034406C>T	uc004czr.1	-	10	1346	c.1327G>A	c.(1327-1329)GAA>AAA	p.E443K	MAP7D2_uc004czq.1_Missense_Mutation_p.E328K|MAP7D2_uc011mji.1_Missense_Mutation_p.E391K|MAP7D2_uc010nfo.1_Missense_Mutation_p.E484K|MAP7D2_uc011mjj.1_Missense_Mutation_p.E398K	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	443										ovary(2)|breast(1)	3						cgaagcctttcctcctctgcc	0.134													23	22					0	0	0.002780	0	0
YY2	404281	broad.mit.edu	37	X	21874647	21874647	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:21874647C>T	uc011mjp.1	+	1	45	c.45C>T	c.(43-45)ATC>ATT	p.I15I	MBTPS2_uc004dae.2_Intron|MBTPS2_uc010nfr.2_Intron|YY2_uc010nfq.2_Silent_p.I233I|MBTPS2_uc004dab.2_Intron	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	15					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						ACCTGGAGATCCCGGCAGATA	0.527													65	68					0	0	0.003610	0	0
ZFX	7543	broad.mit.edu	37	X	24226484	24226484	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:24226484T>C	uc004dbf.2	+	7	1348	c.1090T>C	c.(1090-1092)TAT>CAT	p.Y364H	ZFX_uc004dbd.1_Missense_Mutation_p.Y364H|ZFX_uc010nfx.1_Missense_Mutation_p.Y135H|ZFX_uc004dbe.2_Missense_Mutation_p.Y364H|ZFX_uc011mjv.1_Missense_Mutation_p.Y403H|ZFX_uc010nfy.1_Intron|ZFX_uc010nfz.2_Missense_Mutation_p.Y67H	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	364					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						GGCAGCAGCTTATGGTAAGTT	0.483													28	41					0	0	0.008361	0	0
ZFX	7543	broad.mit.edu	37	X	24229431	24229431	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:24229431C>T	uc004dbf.2	+	9	2614	c.2356C>T	c.(2356-2358)CGA>TGA	p.R786*	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Nonsense_Mutation_p.R825*|ZFX_uc010nfz.2_Nonsense_Mutation_p.R442*	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	786	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						GAAAGGCTTCCGAAGACCTTC	0.438													22	39					0	0	0.001882	0	0
DMD	1756	broad.mit.edu	37	X	31165473	31165473	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:31165473C>T	uc004dda.1	-	75	10960	c.10716G>A	c.(10714-10716)CTG>CTA	p.L3572L	DMD_uc004dcq.1_Silent_p.L843L|DMD_uc004dcr.1_Silent_p.L992L|DMD_uc004dcs.1_Silent_p.L1002L|DMD_uc004dct.1_Silent_p.L1112L|DMD_uc004dcu.1_Silent_p.L1112L|DMD_uc004dcv.1_Silent_p.L1099L|DMD_uc004dcw.2_Silent_p.L2228L|DMD_uc004dcx.2_Silent_p.L2231L|DMD_uc004dcz.2_Silent_p.L3449L|DMD_uc004dcy.1_Silent_p.L3568L|DMD_uc004ddb.1_Silent_p.L3564L|DMD_uc004dcm.1_Silent_p.L504L|DMD_uc004dcn.1_Silent_p.L491L|DMD_uc004dco.1_Silent_p.L504L|DMD_uc004dcp.1_Silent_p.L491L|DMD_uc011mkb.1_Silent_p.L394L	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3572					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TCCTGGCTTCCAGGCGGCCTT	0.562													34	31					0	0	0.002836	0	0
DMD	1756	broad.mit.edu	37	X	31190524	31190524	+	Silent	SNP	T	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:31190524T>C	uc004dda.1	-	73	10579	c.10335A>G	c.(10333-10335)GCA>GCG	p.A3445A	DMD_uc004dcq.1_Silent_p.A716A|DMD_uc004dcr.1_Intron|DMD_uc004dcs.1_Intron|DMD_uc004dct.1_Silent_p.A985A|DMD_uc004dcu.1_Silent_p.A985A|DMD_uc004dcv.1_Silent_p.A972A|DMD_uc004dcw.2_Silent_p.A2101A|DMD_uc004dcx.2_Silent_p.A2104A|DMD_uc004dcz.2_Silent_p.A3322A|DMD_uc004dcy.1_Silent_p.A3441A|DMD_uc004ddb.1_Silent_p.A3437A|DMD_uc004dcm.1_Silent_p.A377A|DMD_uc004dcn.1_Silent_p.A364A|DMD_uc004dco.1_Silent_p.A377A|DMD_uc004dcp.1_Silent_p.A364A|DMD_uc011mkb.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3445					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TTTCCATTTCTGCTAGCCTGA	0.333													15	18					0	0	0.002450	0	0
DMD	1756	broad.mit.edu	37	X	31645817	31645817	+	Silent	SNP	T	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:31645817T>A	uc004dda.1	-	55	8434	c.8190A>T	c.(8188-8190)GGA>GGT	p.G2730G	DMD_uc004dcr.1_Silent_p.G270G|DMD_uc004dcs.1_Silent_p.G270G|DMD_uc004dct.1_Silent_p.G270G|DMD_uc004dcu.1_Silent_p.G270G|DMD_uc004dcv.1_Silent_p.G270G|DMD_uc004dcw.2_Silent_p.G1386G|DMD_uc004dcx.2_Silent_p.G1389G|DMD_uc004dcz.2_Silent_p.G2607G|DMD_uc004dcy.1_Silent_p.G2726G|DMD_uc004ddb.1_Silent_p.G2722G	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2730	Spectrin 19.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GCTCTTTTACTCCCTTGGAGT	0.438													9	24					0	0	0.000978	0	0
DMD	1756	broad.mit.edu	37	X	31645819	31645819	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:31645819C>T	uc004dda.1	-	55	8432	c.8188G>A	c.(8188-8190)GGA>AGA	p.G2730R	DMD_uc004dcr.1_Missense_Mutation_p.G270R|DMD_uc004dcs.1_Missense_Mutation_p.G270R|DMD_uc004dct.1_Missense_Mutation_p.G270R|DMD_uc004dcu.1_Missense_Mutation_p.G270R|DMD_uc004dcv.1_Missense_Mutation_p.G270R|DMD_uc004dcw.2_Missense_Mutation_p.G1386R|DMD_uc004dcx.2_Missense_Mutation_p.G1389R|DMD_uc004dcz.2_Missense_Mutation_p.G2607R|DMD_uc004dcy.1_Missense_Mutation_p.G2726R|DMD_uc004ddb.1_Missense_Mutation_p.G2722R	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2730	Spectrin 19.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TCTTTTACTCCCTTGGAGTCT	0.443													9	25					0	0	0.000978	0	0
FAM47A	158724	broad.mit.edu	37	X	34150189	34150189	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:34150189G>A	uc004ddg.2	-	1	240	c.207C>T	c.(205-207)CTC>CTT	p.L69L		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	69										ovary(4)|central_nervous_system(1)	5						GGCGACAAACGAGAGTATCTT	0.562													32	45					0	0	0.003271	0	0
FAM47B	170062	broad.mit.edu	37	X	34961803	34961803	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:34961803G>A	uc004ddi.1	+	1	873	c.855G>A	c.(853-855)CCG>CCA	p.P285P		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	285	Pro-rich.									ovary(3)|breast(1)	4						ATCTCTGCCCGGAGCCTCCCG	0.622													32	35					0	0	0.002836	0	0
FAM47C	442444	broad.mit.edu	37	X	37028690	37028690	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:37028690C>T	uc004ddl.1	+	1	2221	c.2207C>T	c.(2206-2208)TCC>TTC	p.S736F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	736										ovary(3)	3						ACTGGAGTGTCCCATCTCCGC	0.637													30	45					0	0	0.008361	0	0
CYBB	1536	broad.mit.edu	37	X	37658288	37658288	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:37658288G>A	uc004ddr.2	+	7	816	c.755G>A	c.(754-756)GGA>GAA	p.G252E	CYBB_uc011mke.1_RNA|CYBB_uc011mkf.1_Missense_Mutation_p.G220E|CYBB_uc011mkg.1_5'UTR	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	252	Extracellular (Potential).|Ferric oxidoreductase.				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						TCAGAATGGGGAAAAATAAAG	0.383													18	16					0	0	0.010504	0	0
KDM6A	7403	broad.mit.edu	37	X	44950036	44950036	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:44950036C>T	uc004dge.3	+	26	4180	c.3805C>T	c.(3805-3807)CCC>TCC	p.P1269S	KDM6A_uc011mkz.1_Missense_Mutation_p.P1321S|KDM6A_uc011mla.1_Missense_Mutation_p.P1224S|KDM6A_uc011mlb.1_Missense_Mutation_p.P1276S|KDM6A_uc011mlc.1_Missense_Mutation_p.P973S|KDM6A_uc011mld.1_Missense_Mutation_p.P908S	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	1269					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						GTCAATAGTACCCATGGTTCA	0.368			D|N|F|S		renal|oesophageal SCC|MM								38	50					0	0	0.006230	0	0
RP2	6102	broad.mit.edu	37	X	46713160	46713160	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:46713160C>T	uc004dgw.3	+	2	541	c.352C>T	c.(352-354)CGT>TGT	p.R118C		NM_006915	NP_008846	O75695	XRP2_HUMAN	XRP2 protein	118	C-CAP/cofactor C-like.|GTP.		R -> C (in RP2).|R -> H (in RP2; reduces affinity for ARL3 800-fold; loss of stimulation of tubulin GTPase activity; no effect on subcellular location).	R->A: Reduces affinity and GTP-hydrolysis rate for mouse ARL3.	cell morphogenesis|CTP biosynthetic process|GTP biosynthetic process|protein folding|UTP biosynthetic process|visual perception	cytoplasm|plasma membrane	ATP binding|GTP binding|GTPase activator activity|nucleoside diphosphate kinase activity|unfolded protein binding				0						CCAACAATTTCGTGTGCGAGA	0.418													54	64					0	0	0.003610	0	0
RGN	9104	broad.mit.edu	37	X	46949287	46949287	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:46949287C>T	uc004dgz.1	+	5	1428	c.459C>T	c.(457-459)TCC>TCT	p.S153S	RGN_uc004dha.1_Silent_p.S153S|RGN_uc010nho.1_Silent_p.S100S|RGN_uc010nhp.1_Intron	NM_152869	NP_690608	Q15493	RGN_HUMAN	regucalcin	153					cellular calcium ion homeostasis|positive regulation of ATPase activity|regulation of calcium-mediated signaling	cytoplasm|nucleus	calcium ion binding|enzyme regulator activity|gluconolactonase activity|zinc ion binding				0						TGGACATTTCCAATGGTTTGG	0.498													37	39					0	0	0.007835	0	0
ZNF157	7712	broad.mit.edu	37	X	47272621	47272621	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:47272621G>A	uc004dhr.1	+	4	1218	c.1149G>A	c.(1147-1149)GAG>GAA	p.E383E		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	383					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACACAGGAGAGAAACCTTACG	0.428													8	9					0	0	0.006214	0	0
CACNA1F	778	broad.mit.edu	37	X	49061740	49061740	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:49061740G>A	uc004dnb.2	-	48	5853	c.5791C>T	c.(5791-5793)CTG>TTG	p.L1931L	CACNA1F_uc010nip.2_Silent_p.L1920L	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1931	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	TCCAGCGTCAGGCGACACGCA	0.597													8	12					0	0	0.004482	0	0
CCDC22	28952	broad.mit.edu	37	X	49105171	49105171	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:49105171G>A	uc004dnd.1	+	12	1563	c.1407G>A	c.(1405-1407)AGG>AGA	p.R469R	CCDC22_uc004dnc.1_RNA	NM_014008	NP_054727	O60826	CCD22_HUMAN	coiled-coil domain containing 22	469	Potential.									central_nervous_system(1)	1						AGGCCCGCAGGAAGGAGGAGG	0.607													12	10					0	0	0.001855	0	0
GAGE10	643832	broad.mit.edu	37	X	49161358	49161358	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:49161358C>T	uc010nir.1	+	2	136	c.20C>T	c.(19-21)TCG>TTG	p.S7L		NM_001098413	NP_001091883	A6NGK3	GAG10_HUMAN	G antigen 10	7											0	Ovarian(276;0.236)					CGAGGAAGATCGACCTATCGG	0.453													162	223					0	0	0.003610	0	0
MAGED1	9500	broad.mit.edu	37	X	51641707	51641707	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:51641707G>A	uc004dpm.2	+	10	1907	c.1812G>A	c.(1810-1812)AGG>AGA	p.R604R	MAGED1_uc004dpn.2_Silent_p.R660R|MAGED1_uc004dpo.2_Silent_p.R604R	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	604	MAGE.				apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					GAGATCTAAGGAAACTTCTCA	0.448										Multiple Myeloma(10;0.10)			23	18					0	0	0.007291	0	0
KLF8	11279	broad.mit.edu	37	X	56310850	56310850	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:56310850C>T	uc004dur.2	+	6	1949	c.1003C>T	c.(1003-1005)CGG>TGG	p.R335W	KLF8_uc011mop.1_3'UTR|KLF8_uc010nkh.2_RNA	NM_007250	NP_009181	O95600	KLF8_HUMAN	Kruppel-like factor 8 isoform 1	335	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CAAGCCTTTTCGGTGCACAGA	0.547													15	19					0	0	0.004007	0	0
FAAH2	158584	broad.mit.edu	37	X	57405126	57405126	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:57405126C>T	uc004dvc.2	+	6	934	c.785C>T	c.(784-786)GCC>GTC	p.A262V		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	262						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						GCTGTGGGAGCCCAGGAGTTG	0.512										HNSCC(52;0.14)			38	41					0	0	0.006230	0	0
ZXDB	158586	broad.mit.edu	37	X	57619480	57619480	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:57619480C>T	uc004dvd.2	+	1	1212	c.999C>T	c.(997-999)CCC>CCT	p.P333P		NM_007157	NP_009088	P98169	ZXDB_HUMAN	zinc finger, X-linked, duplicated B	333	Required for interaction with ZXDC (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AACTGCGGCCCTTTGGCTGCC	0.597													19	13					0	0	0.008871	0	0
FAM123B	139285	broad.mit.edu	37	X	63412503	63412503	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:63412503G>A	uc004dvo.2	-	2	937	c.664C>T	c.(664-666)CAA>TAA	p.Q222*		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	222					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)|p.Q222*(1)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						CTAGGGGCTTGGAAGGTCTCC	0.577													28	31					0	0	0.008361	0	0
MTMR8	55613	broad.mit.edu	37	X	63574672	63574672	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:63574672G>A	uc004dvs.2	-	4	521	c.453C>T	c.(451-453)GCC>GCT	p.A151A	MTMR8_uc011mou.1_Silent_p.A151A|MTMR8_uc004dvt.1_Silent_p.A151A	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	151	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						AGTTTCTGTTGGCATCTGTTA	0.383													24	36					0	0	0.002096	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64708956	64708956	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:64708956C>T	uc010nko.2	+	1	251	c.242C>T	c.(241-243)TCC>TTC	p.S81F		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	81							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						CCAAGTTTCTCCCAGAGCAGC	0.493													48	51					0	0	0.003610	0	0
STARD8	9754	broad.mit.edu	37	X	67943842	67943842	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:67943842G>A	uc004dxa.2	+	13	3205	c.2833G>A	c.(2833-2835)GAT>AAT	p.D945N	STARD8_uc004dxb.2_Missense_Mutation_p.D1025N|STARD8_uc004dxc.3_Missense_Mutation_p.D945N	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	945	START.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						CCAGTCCCTGGATCCGGAACA	0.602													15	23					0	0	0.002450	0	0
PJA1	64219	broad.mit.edu	37	X	68381536	68381536	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:68381536C>T	uc004dxh.2	-	2	1832	c.1546G>A	c.(1546-1548)GGA>AGA	p.G516R	PJA1_uc011mpi.1_Missense_Mutation_p.G234R|PJA1_uc004dxg.2_Missense_Mutation_p.G328R|PJA1_uc004dxi.2_Missense_Mutation_p.G461R	NM_145119	NP_660095	Q8NG27	PJA1_HUMAN	praja 1 isoform a	516							zinc ion binding				0						TCTGCAAATCCATCAAAGAGG	0.502													27	56					0	0	0.005443	0	0
DLG3	1741	broad.mit.edu	37	X	69669618	69669618	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:69669618G>A	uc004dyi.1	+	4	940	c.612G>A	c.(610-612)AAG>AAA	p.K204K	DLG3_uc004dyj.1_5'Flank	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	204	PDZ 1.				axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					AGGCGCTGAAGGAGGCAGGCC	0.657													12	12					0	0	0.002450	0	0
ZMYM3	9203	broad.mit.edu	37	X	70466457	70466457	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:70466457C>T	uc004dzh.1	-	14	2487	c.2400G>A	c.(2398-2400)GGG>GGA	p.G800G	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Silent_p.G800G|ZMYM3_uc004dzj.1_Intron	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	800					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					TGCCCAAATTCCCATTTTCCT	0.517													20	35					0	0	0.003330	0	0
TAF1	6872	broad.mit.edu	37	X	70586246	70586246	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:70586246G>A	uc004dzu.3	+	1	133	c.82G>A	c.(82-84)GAA>AAA	p.E28K	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.E28K	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	28	Protein kinase 1.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				GGACAGCGACGAAGATTCCGC	0.562													40	43					0	0	0.002522	0	0
OGT	8473	broad.mit.edu	37	X	70784462	70784462	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:70784462G>A	uc004eaa.1	+	19	2665	c.2448G>A	c.(2446-2448)AAG>AAA	p.K816K	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Silent_p.K806K|OGT_uc004eac.2_Silent_p.K677K|OGT_uc004ead.2_Silent_p.K435K	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	816					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					TCAACAATAAGGCTGCAACTG	0.373													11	23					0	0	0.001855	0	0
ACRC	93953	broad.mit.edu	37	X	70823746	70823746	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:70823746G>A	uc004eae.2	+	8	1120	c.619G>A	c.(619-621)GAC>AAC	p.D207N	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	207	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					TTCATCCGACGACAACAGTGA	0.498													103	134					0	0	0.003610	0	0
CXCR3	2833	broad.mit.edu	37	X	70837017	70837017	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:70837017A>G	uc004eaf.2	-	2	373	c.305T>C	c.(304-306)CTG>CCG	p.L102P	BCYRN1_uc011mpt.1_Intron|CXCR3_uc011mpx.1_Missense_Mutation_p.L149P	NM_001504	NP_001495	P49682	CXCR3_HUMAN	chemokine (C-X-C motif) receptor 3 isoform A	102	Helical; Name=2; (Potential).				cell adhesion|cellular component movement|chemotaxis|elevation of cytosolic calcium ion concentration	cytoplasm|integral to plasma membrane	C-X-C chemokine receptor activity			ovary(2)|central_nervous_system(1)	3	Renal(35;0.156)					TGTCAGCACCAGCAGCGTGTC	0.647													7	17					0	0	0.004482	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433197	72433197	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:72433197C>T	uc004ebi.2	-	1	1488	c.1132G>A	c.(1132-1134)GGA>AGA	p.G378R	NAP1L2_uc011mqj.1_Missense_Mutation_p.G236R	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	378					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					GAGGTGATTCCATGAGGAGAG	0.353													25	24					0	0	0.003330	0	0
TSIX	9383	broad.mit.edu	37	X	73046495	73046495	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:73046495C>T	uc004ebn.2	+	1		c.34456C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CTTGGGATTTCCCCAGGTCTT	0.443													72	76					0	0	0.003610	0	0
XIST	7503	broad.mit.edu	37	X	73072336	73072336	+	RNA	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:73072336C>T	uc004ebm.1	-	1		c.253G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CAAAATATTCCAAATACTTTC	0.264													5	19					0	0	0.000602	0	0
ZCCHC13	389874	broad.mit.edu	37	X	73524285	73524285	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:73524285C>T	uc004ebs.3	+	1	261	c.184C>T	c.(184-186)CTT>TTT	p.L62F		NM_203303	NP_976048	Q8WW36	ZCH13_HUMAN	zinc finger, CCHC domain containing 13	62	CCHC-type 2; degenerate.						nucleic acid binding|zinc ion binding				0						GAACTGTGTCCTTCTCGGAAA	0.517													21	35					0	0	0.002299	0	0
ATP7A	538	broad.mit.edu	37	X	77244104	77244104	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:77244104C>T	uc004ecx.3	+	3	647	c.487C>T	c.(487-489)CAT>TAT	p.H163Y	ATP7A_uc004ecw.2_Missense_Mutation_p.H163Y	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	163	Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						TTGTGAAGATCATAGTATGGC	0.423													88	102					0	0	0.003610	0	0
GPR174	84636	broad.mit.edu	37	X	78426648	78426648	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:78426648G>A	uc004edg.1	+	1	180	c.144G>A	c.(142-144)ATG>ATA	p.M48I		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	48	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						ATGGTTATATGAAAGAAACAA	0.368										HNSCC(63;0.18)			8	9					0	0	0.004482	0	0
BRWD3	254065	broad.mit.edu	37	X	79947370	79947370	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:79947370C>T	uc004edt.2	-	30	3696	c.3433G>A	c.(3433-3435)GAA>AAA	p.E1145K	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.E741K|BRWD3_uc004edp.2_Missense_Mutation_p.E974K|BRWD3_uc004edq.2_Missense_Mutation_p.E741K|BRWD3_uc010nmj.1_Missense_Mutation_p.E741K|BRWD3_uc004edr.2_Missense_Mutation_p.E815K|BRWD3_uc004eds.2_Missense_Mutation_p.E741K|BRWD3_uc004edu.2_Missense_Mutation_p.E815K|BRWD3_uc004edv.2_Missense_Mutation_p.E741K|BRWD3_uc004edw.2_Missense_Mutation_p.E741K|BRWD3_uc004edx.2_Missense_Mutation_p.E741K|BRWD3_uc004edy.2_Missense_Mutation_p.E741K|BRWD3_uc004edz.2_Missense_Mutation_p.E815K|BRWD3_uc004eea.2_Missense_Mutation_p.E815K|BRWD3_uc004eeb.2_Missense_Mutation_p.E741K	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1145										ovary(4)	4						TCACATTCTTCGTCTCTGGAA	0.468													27	35					0	0	0.009535	0	0
BRWD3	254065	broad.mit.edu	37	X	79980524	79980524	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:79980524C>T	uc004edt.2	-	15	1692	c.1429G>A	c.(1429-1431)GAT>AAT	p.D477N	BRWD3_uc004edo.2_Missense_Mutation_p.D73N|BRWD3_uc004edp.2_Missense_Mutation_p.D306N|BRWD3_uc004edq.2_Missense_Mutation_p.D73N|BRWD3_uc010nmj.1_Missense_Mutation_p.D73N|BRWD3_uc004edr.2_Missense_Mutation_p.D147N|BRWD3_uc004eds.2_Missense_Mutation_p.D73N|BRWD3_uc004edu.2_Missense_Mutation_p.D147N|BRWD3_uc004edv.2_Missense_Mutation_p.D73N|BRWD3_uc004edw.2_Missense_Mutation_p.D73N|BRWD3_uc004edx.2_Missense_Mutation_p.D73N|BRWD3_uc004edy.2_Missense_Mutation_p.D73N|BRWD3_uc004edz.2_Missense_Mutation_p.D147N|BRWD3_uc004eea.2_Missense_Mutation_p.D147N|BRWD3_uc004eeb.2_Missense_Mutation_p.D73N	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	477	WD 8.									ovary(4)	4						ATCCTTTGATCAAATGGATGG	0.368													20	28					0	0	0.010504	0	0
HMGN5	79366	broad.mit.edu	37	X	80370690	80370690	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:80370690C>T	uc004eee.1	-	7	636	c.307G>A	c.(307-309)GAA>AAA	p.E103K		NM_030763	NP_110390	P82970	HMGN5_HUMAN	high-mobility group nucleosome binding domain 5	103					chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin|nucleolus	chromatin binding|DNA binding			lung(1)	1						TCAATATTTTCTTCTTTTACT	0.199													10	8					0	0	0.008291	0	0
POU3F4	5456	broad.mit.edu	37	X	82763472	82763472	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:82763472C>T	uc004eeg.2	+	1	204	c.140C>T	c.(139-141)CCC>CTC	p.P47L		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	47					sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						CAGGGAGTTCCCAGCAATGGG	0.622													10	11					0	0	0.008291	0	0
POU3F4	5456	broad.mit.edu	37	X	82763704	82763704	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:82763704C>T	uc004eeg.2	+	1	436	c.372C>T	c.(370-372)ATC>ATT	p.I124I		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	124					sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						ACCCGTCTATCACGTCAAGCG	0.662													16	15					0	0	0.006122	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83320119	83320119	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:83320119C>T	uc004eej.1	-	21	2049	c.1972G>A	c.(1972-1974)GAT>AAT	p.D658N	RPS6KA6_uc011mqt.1_Missense_Mutation_p.D658N|RPS6KA6_uc011mqu.1_Missense_Mutation_p.D555N	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	658	Protein kinase 2.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						GAAAGCAAATCCTAAATTAAA	0.299													20	28					0	0	0.001882	0	0
SATL1	340562	broad.mit.edu	37	X	84363419	84363419	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:84363419G>A	uc011mqx.1	-	1	556	c.556C>T	c.(556-558)CCA>TCA	p.P186S	SATL1_uc004een.2_Missense_Mutation_p.P186S	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	242	Gln-rich.						N-acetyltransferase activity			breast(2)	2						CTCATGTTTGGTTGCCTCAGG	0.552											OREG0019887	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	58					0	0	0.006230	0	0
ZNF711	7552	broad.mit.edu	37	X	84526400	84526400	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:84526400C>T	uc004eeo.2	+	9	2199	c.1852C>T	c.(1852-1854)CCT>TCT	p.P618S	ZNF711_uc004eep.2_Missense_Mutation_p.P618S|ZNF711_uc004eeq.2_Missense_Mutation_p.P664S|ZNF711_uc011mqy.1_Missense_Mutation_p.P217S	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	618					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TAAGGATTTTCCTCACAAATG	0.423													13	16					0	0	0.001855	0	0
POF1B	79983	broad.mit.edu	37	X	84561243	84561243	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:84561243C>T	uc004eer.2	-	12	1407	c.1261G>A	c.(1261-1263)GAA>AAA	p.E421K	POF1B_uc004ees.2_Missense_Mutation_p.E421K	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	421	Potential.						actin binding				0						TATTCCAGTTCTTTTAGTCTG	0.338													42	59					0	0	0.002522	0	0
DACH2	117154	broad.mit.edu	37	X	85969711	85969711	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:85969711C>T	uc004eew.2	+	6	1262	c.1092C>T	c.(1090-1092)ACC>ACT	p.T364T	DACH2_uc004eex.2_Silent_p.T351T|DACH2_uc010nmq.2_Silent_p.T230T|DACH2_uc011mra.1_Silent_p.T197T|DACH2_uc010nmr.2_Silent_p.T145T|DACH2_uc004eey.2_Silent_p.T47T|DACH2_uc004eez.2_Silent_p.T47T	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	364					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						GAGCTGGTACCTCTGTTATAA	0.398													33	34					0	0	0.002836	0	0
PCDH11X	27328	broad.mit.edu	37	X	91723302	91723302	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:91723302C>T	uc004efk.1	+	6	4193	c.3348C>T	c.(3346-3348)TTC>TTT	p.F1116F	PCDH11X_uc004efl.1_Silent_p.F1106F|PCDH11X_uc004efo.1_Silent_p.F1079F|PCDH11X_uc010nmv.1_Missense_Mutation_p.S1062L|PCDH11X_uc004efm.1_Intron|PCDH11X_uc004efn.1_Intron	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1116	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						TTTTAGCTTTCATACCTGGAC	0.269													4	5					0	0	0.004007	0	0
RPA4	29935	broad.mit.edu	37	X	96139537	96139537	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:96139537C>T	uc004efv.3	+	1	526	c.228C>T	c.(226-228)ATC>ATT	p.I76I	DIAPH2_uc004eft.3_Intron|DIAPH2_uc004efu.3_Intron|DIAPH2_uc004efs.2_Intron	NM_013347	NP_037479	Q13156	RFA4_HUMAN	replication protein A4, 34kDa	76					DNA damage checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair	DNA replication factor A complex|nucleoplasm	single-stranded DNA binding				0						AGGTCTCCATCGTGGGGGTAA	0.468								Other_identified_genes_with_known_or_suspected_DNA_repair_function					11	17					0	0	0.008291	0	0
DIAPH2	1730	broad.mit.edu	37	X	96502837	96502837	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:96502837C>T	uc004efu.3	+	23	3239	c.2843C>T	c.(2842-2844)ACC>ATC	p.T948I	DIAPH2_uc004eft.3_Missense_Mutation_p.T948I	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	948	Potential.|FH2.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						GAAAAGATGACCATATCCTTT	0.343													33	33					0	0	0.004289	0	0
DRP2	1821	broad.mit.edu	37	X	100515075	100515075	+	Missense_Mutation	SNP	C	T	T	rs34562102		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:100515075C>T	uc004egz.2	+	23	3035	c.2666C>T	c.(2665-2667)TCG>TTG	p.S889L	DRP2_uc011mrh.1_Missense_Mutation_p.S811L	NM_001939	NP_001930	Q13474	DRP2_HUMAN	dystrophin related protein 2	889					central nervous system development	cytoplasm|cytoskeleton	zinc ion binding			ovary(2)	2						TCTGCAGGCTCGTCCCTAGCT	0.572													64	63					0	0	0.003610	0	0
BTK	695	broad.mit.edu	37	X	100611058	100611058	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:100611058C>T	uc004ehg.2	-	15	1741	c.1548G>A	c.(1546-1548)CAG>CAA	p.Q516Q	BTK_uc004ehf.2_Silent_p.Q16Q|BTK_uc010nnh.2_Intron|BTK_uc010nni.2_Intron|BTK_uc004ehe.2_Intron|BTK_uc010nnj.2_RNA|BTK_uc010nnk.2_Intron|BTK_uc010nnl.2_Intron|BTK_uc010nnm.2_Silent_p.Q86Q|BTK_uc010nnn.2_Intron|BTK_uc010nno.2_Silent_p.Q550Q|BTK_uc004ehh.1_Intron|BTK_uc004ehi.2_Silent_p.Q516Q	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	516	Protein kinase.				calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						GGTGAAGGAACTGCTTTGACT	0.517									Agammaglobulinemia_X-linked				61	82					0	0	0.003610	0	0
ARMCX3	51566	broad.mit.edu	37	X	100880198	100880198	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:100880198C>T	uc004ehz.1	+	5	762	c.229C>T	c.(229-231)CCA>TCA	p.P77S	ARMCX3_uc004eia.1_Missense_Mutation_p.P77S|ARMCX3_uc004eib.1_Missense_Mutation_p.P77S|ARMCX3_uc004eic.1_Missense_Mutation_p.P77S	NM_016607	NP_057691	Q9UH62	ARMX3_HUMAN	armadillo repeat containing, X-linked 3	77						integral to membrane	binding			ovary(1)|lung(1)	2						AGTATGGTACCCACCTTGGGC	0.468													60	64					0	0	0.003610	0	0
NXF4	55999	broad.mit.edu	37	X	101817561	101817561	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:101817561G>A	uc004ejf.1	+	4		c.487G>A				NR_002216				Homo sapiens cDNA FLJ42710 fis, clone BRAMY3007609, moderately similar to Homo sapiens nuclear RNA export factor 2 (NXF2).												0						ATAAGAGTTGGATAGTGAATT	0.433													6	9					0	0	0.001984	0	0
GPRASP1	9737	broad.mit.edu	37	X	101912384	101912384	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:101912384G>A	uc004ejj.3	+	5	4344	c.3543G>A	c.(3541-3543)ATG>ATA	p.M1181I	GPRASP1_uc004eji.3_Missense_Mutation_p.M1181I|GPRASP1_uc010nod.2_Missense_Mutation_p.M1181I	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	1181	OPRD1-binding.					cytoplasm	protein binding			ovary(1)|lung(1)	2						CAATGGGTATGAGAAGTGCTT	0.358													37	44					0	0	0.005524	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011373	105011373	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:105011373G>A	uc004elz.1	+	11	2536	c.1780G>A	c.(1780-1782)GCC>ACC	p.A594T		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	594	Cytoplasmic (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						CAGTACTTCAGCCACTCTGGT	0.473													50	41					0	0	0.003610	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449609	105449609	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:105449609C>T	uc004emf.1	+	4	833	c.184C>T	c.(184-186)CAA>TAA	p.Q62*	MUM1L1_uc004emg.1_Nonsense_Mutation_p.Q62*	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	62										ovary(2)|pancreas(1)|skin(1)	4						AAATAAATCTCAAATTGAAGC	0.398													20	23					0	0	0.002780	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106066550	106066550	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:106066550G>A	uc004emo.2	+	5	846	c.681G>A	c.(679-681)GAG>GAA	p.E227E	MORC4_uc004emp.3_Intron|TBC1D8B_uc004emm.2_Silent_p.E227E|TBC1D8B_uc004emn.2_Silent_p.E227E	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	227						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CCCAAGGAGAGAATCACTACT	0.363													29	53					0	0	0.002096	0	0
IRS4	8471	broad.mit.edu	37	X	107977900	107977900	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:107977900C>T	uc004eoc.2	-	1	1708	c.1675G>A	c.(1675-1677)GGT>AGT	p.G559S		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	559						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						TGGCCACCACCTGAACCGTGC	0.652													64	92					0	0	0.003610	0	0
GUCY2F	2986	broad.mit.edu	37	X	108631727	108631727	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:108631727G>A	uc004eod.3	-	15	3223	c.2947C>T	c.(2947-2949)CTT>TTT	p.L983F	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	983	Guanylate cyclase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CCTGAGTGAAGGCCAATTCGA	0.453													78	101					0	0	0.003610	0	0
TDGF3	6998	broad.mit.edu	37	X	109764816	109764816	+	RNA	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:109764816G>A	uc004eos.1	+	1		c.1277G>A				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						ATGGCCTTGTGATGGATGAGC	0.532													21	25					0	0	0.001882	0	0
SLC6A14	11254	broad.mit.edu	37	X	115584228	115584228	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:115584228C>T	uc004eqi.2	+	9	1310	c.1206C>T	c.(1204-1206)CTC>CTT	p.L402L		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	402	Helical; Name=8; (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	TAGCCCAACTCCCAGGTGGTC	0.358													39	38					0	0	0.007835	0	0
WDR44	54521	broad.mit.edu	37	X	117529212	117529212	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:117529212G>A	uc004eqn.2	+	6	1383	c.958G>A	c.(958-960)GAA>AAA	p.E320K	WDR44_uc004eqo.2_Missense_Mutation_p.E320K|WDR44_uc011mtr.1_Missense_Mutation_p.E295K|WDR44_uc010nqi.2_Missense_Mutation_p.E30K	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	320						cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						ATATTTCCAGGAAAATGGAAA	0.348													18	27					0	0	0.008871	0	0
LONRF3	79836	broad.mit.edu	37	X	118151559	118151559	+	Missense_Mutation	SNP	G	A	A	rs143959775		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:118151559G>A	uc004eqw.2	+	11	2217	c.2186G>A	c.(2185-2187)CGA>CAA	p.R729Q	LONRF3_uc004eqx.2_Missense_Mutation_p.R688Q|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Missense_Mutation_p.R473Q	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	729	Lon.				proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						TTGGAAAGCCGAGCTCAGCTC	0.502													61	73					0	0	0.003610	0	0
GRIA3	2892	broad.mit.edu	37	X	122538605	122538605	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:122538605G>A	uc004etq.3	+	11	1633	c.1340G>A	c.(1339-1341)GGA>GAA	p.G447E	GRIA3_uc004etr.3_Missense_Mutation_p.G447E|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.G431E	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	447	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	CAACTGGAAGGAAATGAACGA	0.373													23	60					0	0	0.005443	0	0
ODZ1	10178	broad.mit.edu	37	X	123554651	123554651	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:123554651C>T	uc004euj.2	-	24	4535	c.4471G>A	c.(4471-4473)GAT>AAT	p.D1491N	ODZ1_uc011muj.1_Missense_Mutation_p.D1497N|ODZ1_uc010nqy.2_Missense_Mutation_p.D1498N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1491	Extracellular (Potential).|NHL 5.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ATCTTTGCATCTTTGGCATAG	0.453													37	98					0	0	0.008740	0	0
ODZ1	10178	broad.mit.edu	37	X	123785911	123785911	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:123785911C>T	uc004euj.2	-	8	1496	c.1432G>A	c.(1432-1434)GAT>AAT	p.D478N	ODZ1_uc011muj.1_Missense_Mutation_p.D477N|ODZ1_uc010nqy.2_Missense_Mutation_p.D478N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	478	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TGCTGTGTATCATCAGAGCCC	0.433													29	59					0	0	0.008361	0	0
ODZ1	10178	broad.mit.edu	37	X	123871003	123871003	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:123871003G>A	uc004euj.2	-	4	644	c.580C>T	c.(580-582)CCA>TCA	p.P194S	ODZ1_uc011muj.1_Missense_Mutation_p.P194S|ODZ1_uc010nqy.2_Missense_Mutation_p.P194S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	194	Teneurin N-terminal.|Cytoplasmic (Potential).|Poly-Pro.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GGTGGCGGTGGGAGGGGTCTG	0.567													41	13					0	0	0.006230	0	0
ODZ1	10178	broad.mit.edu	37	X	124029937	124029937	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:124029937C>T	uc004euj.2	-	2	435	c.371G>A	c.(370-372)TGG>TAG	p.W124*	ODZ1_uc011muj.1_Nonsense_Mutation_p.W124*|ODZ1_uc010nqy.2_Nonsense_Mutation_p.W124*	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	124	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TCCCCTTATCCACATTCTTAG	0.502													214	133					0	0	0.003610	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125299834	125299834	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:125299834G>A	uc004euk.1	-	1	101	c.74C>T	c.(73-75)TCG>TTG	p.S25L		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	25										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						TAAACCCTGCGACGACGAGCT	0.667													30	14					0	0	0.002096	0	0
ENOX2	10495	broad.mit.edu	37	X	129790564	129790564	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:129790564C>T	uc004evw.2	-	11	1625	c.1207G>A	c.(1207-1209)GAG>AAG	p.E403K	ENOX2_uc004evx.2_Missense_Mutation_p.E374K|ENOX2_uc004evy.2_Missense_Mutation_p.E374K|ENOX2_uc004evv.2_Missense_Mutation_p.E230K	NM_182314	NP_872114	Q16206	ENOX2_HUMAN	ecto-NOX disulfide-thiol exchanger 2 isoform b	403	Potential.				cell growth|electron transport chain|regulation of growth|transport|ultradian rhythm	cytosol|external side of plasma membrane|extracellular space	nucleic acid binding|nucleotide binding|protein disulfide oxidoreductase activity			ovary(1)	1						CCTGATTCCTCAGTTTCTTTT	0.234													41	68					0	0	0.005524	0	0
OR13H1	347468	broad.mit.edu	37	X	130678528	130678528	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:130678528C>T	uc011muw.1	+	1	481	c.481C>T	c.(481-483)CTA>TTA	p.L161L	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					CATGCTCATCCTATCCCTGAG	0.493													221	100					0	0	0.003610	0	0
FRMD7	90167	broad.mit.edu	37	X	131212947	131212947	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:131212947C>T	uc004ewn.2	-	12	1276	c.1098G>A	c.(1096-1098)GTG>GTA	p.V366V	FRMD7_uc011muy.1_Silent_p.V351V	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	366					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GCACTCCATTCACATTTTGGT	0.289													98	200					0	0	0.003610	0	0
MOSPD1	56180	broad.mit.edu	37	X	134030969	134030969	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:134030969C>T	uc004eyb.2	-	4	513	c.326G>A	c.(325-327)GGA>GAA	p.G109E	MOSPD1_uc004eya.2_Missense_Mutation_p.G109E|MOSPD1_uc010nrv.2_RNA|MOSPD1_uc011mvr.1_Missense_Mutation_p.G109E	NM_019556	NP_062456	Q9UJG1	MSPD1_HUMAN	motile sperm domain containing 1	109	MSP.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	integral to membrane|nucleus|perinuclear region of cytoplasm	structural molecule activity			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(192;0.000127)					CTCTTTTCTTCCCAAAGCCTT	0.388													75	146					0	0	0.003610	0	0
SAGE1	55511	broad.mit.edu	37	X	134992691	134992691	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:134992691C>T	uc004ezh.2	+	16	2149	c.1982C>T	c.(1981-1983)TCA>TTA	p.S661L	SAGE1_uc010nry.1_Missense_Mutation_p.S630L|SAGE1_uc011mvv.1_Missense_Mutation_p.S285L	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	661										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GCTGGAATTTCATCCACGATT	0.438													136	77					0	0	0.003610	0	0
FHL1	2273	broad.mit.edu	37	X	135289978	135289978	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:135289978C>T	uc004ezo.2	+	4	459	c.359C>T	c.(358-360)ACC>ATC	p.T120I	FHL1_uc010nrz.2_Missense_Mutation_p.T120I|FHL1_uc004ezm.2_Intron|FHL1_uc004ezl.2_Missense_Mutation_p.T120I|FHL1_uc004ezq.2_Missense_Mutation_p.T120I|FHL1_uc011mvy.1_Missense_Mutation_p.T120I|FHL1_uc011mvz.1_Missense_Mutation_p.T120I|FHL1_uc004ezn.2_Missense_Mutation_p.T120I|FHL1_uc011mwa.1_Missense_Mutation_p.T149I|FHL1_uc011mwb.1_RNA|FHL1_uc004ezp.2_Missense_Mutation_p.T136I|FHL1_uc004ezr.2_5'UTR	NM_001159702	NP_001153174	Q13642	FHL1_HUMAN	four and a half LIM domains 1 isoform 1	120	LIM zinc-binding 2.				cell differentiation|cell growth|muscle organ development|organ morphogenesis	cytosol|nucleus|plasma membrane	protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(192;0.000127)					TACAAGGGGACCGTCTGGCAC	0.557													17	39					0	0	0.007413	0	0
GPR112	139378	broad.mit.edu	37	X	135431967	135431967	+	Silent	SNP	A	G	G			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:135431967A>G	uc004ezu.1	+	6	6393	c.6102A>G	c.(6100-6102)ACA>ACG	p.T2034T	GPR112_uc010nsb.1_Silent_p.T1829T|GPR112_uc010nsc.1_Silent_p.T1801T	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2034	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTTCCTCTACAGTAGAGGTGT	0.453													46	121					0	0	0.003610	0	0
GPR112	139378	broad.mit.edu	37	X	135480048	135480048	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:135480048C>T	uc004ezu.1	+	20	8484	c.8193C>T	c.(8191-8193)TCC>TCT	p.S2731S	GPR112_uc010nsb.1_Silent_p.S2526S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2731	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGGATTTATCCAGGTCTACAG	0.418													72	155					0	0	0.003610	0	0
MCF2	4168	broad.mit.edu	37	X	138664631	138664631	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:138664631C>T	uc004fau.2	-	25	3071	c.2777G>A	c.(2776-2778)TGA>TAA	p.*926*	MCF2_uc004fav.2_Silent_p.*942*|MCF2_uc011mwl.1_Silent_p.*903*|MCF2_uc010nsh.1_Missense_Mutation_p.D852N|MCF2_uc011mwm.1_Missense_Mutation_p.D813N|MCF2_uc011mwn.1_Missense_Mutation_p.D997N|MCF2_uc004faw.2_Silent_p.*986*|MCF2_uc011mwo.1_Silent_p.*1002*	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	926					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					GTAGCTTCATCAATATAGGAG	0.448													28	61					0	0	0.003271	0	0
MCF2	4168	broad.mit.edu	37	X	138708447	138708447	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:138708447C>T	uc004fau.2	-	6	886	c.592G>A	c.(592-594)GAT>AAT	p.D198N	MCF2_uc004fav.2_Missense_Mutation_p.D198N|MCF2_uc011mwl.1_Missense_Mutation_p.D159N|MCF2_uc010nsh.1_Missense_Mutation_p.D198N|MCF2_uc011mwm.1_Missense_Mutation_p.D159N|MCF2_uc011mwn.1_Missense_Mutation_p.D343N|MCF2_uc004faw.2_Missense_Mutation_p.D258N|MCF2_uc011mwo.1_Missense_Mutation_p.D258N	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	198					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					GTTTCCATATCATGTACTTGA	0.348													31	92					0	0	0.003755	0	0
ATP11C	286410	broad.mit.edu	37	X	138840015	138840015	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:138840015G>A	uc004faz.2	-	23	2760	c.2661C>T	c.(2659-2661)TTC>TTT	p.F887F	ATP11C_uc004fax.2_Silent_p.F95F|ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Silent_p.F887F	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	887	Helical; (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					GTGGCAAAATGAAACAAAGGT	0.279													14	17					0	0	0.004990	0	0
SOX3	6658	broad.mit.edu	37	X	139586875	139586875	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:139586875C>T	uc004fbd.1	-	1	351	c.351G>A	c.(349-351)GCG>GCA	p.A117A		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	117					face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					CGCCCGAGTTCGCGCCGCCGG	0.706													6	14					0	0	0.001984	0	0
SPANXC	64663	broad.mit.edu	37	X	140335767	140335767	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:140335767C>T	uc004fbk.2	-	2	233	c.177G>A	c.(175-177)GTG>GTA	p.V59V	SPANXC_uc004fbl.2_RNA	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X	59			V -> F.			cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					ATGTTCTTTTCACGTTCCTCC	0.498													187	258					0	0	0.003610	0	0
MAGEC3	139081	broad.mit.edu	37	X	140983291	140983291	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:140983291G>A	uc011mwp.1	+	6	1069	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	MAGEC3_uc004fbs.2_Intron|MAGEC3_uc010nsj.2_5'Flank	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	357	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCACAGACAGGAAGATGGCCG	0.592													32	11					0	0	0.002445	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993622	140993622	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:140993622C>T	uc004fbt.2	+	4	718	c.432C>T	c.(430-432)TTC>TTT	p.F144F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	144							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGTATTTTCCAGAGTTCCC	0.502										HNSCC(15;0.026)			91	67					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993630	140993630	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:140993630C>T	uc004fbt.2	+	4	726	c.440C>T	c.(439-441)TCC>TTC	p.S147F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	147							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCAGAGTTCCCCTGAGAGT	0.498										HNSCC(15;0.026)			105	73					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995048	140995048	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:140995048G>A	uc004fbt.2	+	4	2144	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	620							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGGGGGAGGAATTCCAGTC	0.562										HNSCC(15;0.026)			130	260					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995230	140995230	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:140995230G>A	uc004fbt.2	+	4	2326	c.2040G>A	c.(2038-2040)GAG>GAA	p.E680E	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	680							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGTCCTGAGAGTGCTCCTG	0.567										HNSCC(15;0.026)			87	47					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996397	140996397	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:140996397C>T	uc004fbt.2	+	4	3493	c.3207C>T	c.(3205-3207)TTC>TTT	p.F1069F	MAGEC1_uc010nsl.1_Silent_p.F136F	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1069	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GTTACGAATTCCTGTGGGGTC	0.488										HNSCC(15;0.026)			84	190					0	0	0.003610	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795202	142795202	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:142795202C>T	uc004fbz.2	-	2	1230	c.476G>A	c.(475-477)GGA>GAA	p.G159E		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	159										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CTGTGAAGATCCTTCAGGTGG	0.502													447	302					0	0	0.003610	0	0
FMR1NB	158521	broad.mit.edu	37	X	147088275	147088275	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:147088275C>T	uc004fcm.2	+	3	525	c.451C>T	c.(451-453)CTT>TTT	p.L151F		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	151	P-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCTGCAAGATCTTAGTGAGAG	0.378													68	147					0	0	0.003610	0	0
AFF2	2334	broad.mit.edu	37	X	148044272	148044272	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:148044272A>C	uc004fcp.2	+	13	3197	c.2718A>C	c.(2716-2718)AGA>AGC	p.R906S	AFF2_uc004fcq.2_Missense_Mutation_p.R896S|AFF2_uc004fcr.2_Missense_Mutation_p.R867S|AFF2_uc011mxb.1_Missense_Mutation_p.R871S|AFF2_uc004fcs.2_Missense_Mutation_p.R873S|AFF2_uc011mxc.1_Missense_Mutation_p.R547S	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	906					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GAGCAAATAGAAGAAAGGAAG	0.433													28	15					0	0	0.007291	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092293	151092293	+	Missense_Mutation	SNP	G	A	A	rs144298375		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:151092293G>A	uc004fez.2	+	3	313	c.157G>A	c.(157-159)GAA>AAA	p.E53K	MAGEA4_uc004ffa.2_Missense_Mutation_p.E53K|MAGEA4_uc004ffb.2_Missense_Mutation_p.E53K|MAGEA4_uc004ffc.2_Missense_Mutation_p.E53K|MAGEA4_uc004ffd.2_Missense_Mutation_p.E53K	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	53				E -> K (in Ref. 3; BAA06841).			protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CACCCTGGAGGAAGTGCCTGC	0.617													92	54					0	0	0.003610	0	0
GABRA3	2556	broad.mit.edu	37	X	151336938	151336938	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:151336938G>A	uc010ntk.1	-	10	1481	c.1241C>T	c.(1240-1242)TCC>TTC	p.S414F		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	414	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGAGATGGTGGAAAATTCAGT	0.547													145	101					0	0	0.003610	0	0
CETN2	1069	broad.mit.edu	37	X	151997145	151997145	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:151997145G>A	uc004fgq.2	-	4	412	c.365C>T	c.(364-366)TCG>TTG	p.S122L	CETN2_uc004fgr.2_Missense_Mutation_p.S51L|NSDHL_uc004fgt.1_5'Flank|NSDHL_uc004fgs.1_5'Flank	NM_004344	NP_004335	P41208	CETN2_HUMAN	caltractin	122	EF-hand 3.|1.				cell division|centriole replication|G2/M transition of mitotic cell cycle|mitosis|nucleotide-excision repair|regulation of cytokinesis	centriole|cytosol|XPC complex	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					ATTTTTGAACGAAATCTTCCC	0.398								Direct_reversal_of_damage|NER					81	51					0	0	0.003610	0	0
PNMA5	114824	broad.mit.edu	37	X	152159858	152159858	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:152159858G>A	uc010ntw.2	-	3	624	c.285C>T	c.(283-285)CCC>CCT	p.P95P	PNMA5_uc004fha.3_Silent_p.P95P|PNMA5_uc010ntx.2_Silent_p.P95P|PNMA5_uc004fgy.3_Silent_p.P95P	NM_001103151	NP_001096621	Q96PV4	PNMA5_HUMAN	paraneoplastic antigen like 5	95					apoptosis			p.P95P(1)		ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ctgggttacggggttttacca	0													115	73					0	0	0.003610	0	0
PNMA3	29944	broad.mit.edu	37	X	152226667	152226667	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:152226667G>A	uc004fhc.2	+	2	1591	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	419	CCHC-type.				apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TAGCTGTGGGGAAGACGGCCA	0.582													57	97					0	0	0.003610	0	0
L1CAM	3897	broad.mit.edu	37	X	153135271	153135271	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:153135271C>T	uc004fjb.2	-	9	1218	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	L1CAM_uc004fjc.2_Silent_p.G370G|L1CAM_uc010nuo.2_Silent_p.G365G|L1CAM_uc004fjd.1_Silent_p.G184G|L1CAM_uc004fje.1_Silent_p.G365G	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	370	Extracellular (Potential).|Ig-like C2-type 4.		G -> R (in HSAS, MASA and SPG1).		axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCACAGGGATCCCGTTGATTC	0.652													6	37					0	0	0.001984	0	0
ARHGAP4	393	broad.mit.edu	37	X	153186550	153186550	+	Silent	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:153186550C>T	uc004fjk.1	-	4	540	c.498G>A	c.(496-498)ACG>ACA	p.T166T	ARHGAP4_uc011mzf.1_Silent_p.T143T|ARHGAP4_uc004fjl.1_Silent_p.T166T|ARHGAP4_uc010nup.1_RNA	NM_001666	NP_001657	P98171	RHG04_HUMAN	Rho GTPase activating protein 4 isoform 2	166	Potential.				apoptosis|cytoskeleton organization|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|Rho protein signal transduction	cytosol|focal adhesion|nucleus	Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			central_nervous_system(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTTTCCTCACCGTCTGGAGCT	0.632													9	1					0	0	0.000978	0	0
TAZ	6901	broad.mit.edu	37	X	153640454	153640454	+	Silent	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:153640454G>A	uc004fkx.2	+	2	445	c.141G>A	c.(139-141)AGG>AGA	p.R47R	DNASE1L1_uc004fks.1_5'Flank|DNASE1L1_uc004fkt.1_5'Flank|DNASE1L1_uc004fku.1_5'Flank|DNASE1L1_uc004fkv.1_5'Flank|DNASE1L1_uc004fkw.1_5'Flank|TAZ_uc004fky.2_Silent_p.R47R|TAZ_uc004fkz.2_RNA|TAZ_uc004fla.2_Silent_p.R47R|TAZ_uc004flb.2_Silent_p.R47R|TAZ_uc010nuy.2_Silent_p.R65R|TAZ_uc004flc.3_Intron	NM_000116	NP_000107	Q16635	TAZ_HUMAN	tafazzin isoform 1	47					cardiac muscle contraction|cardiac muscle tissue development|cardiolipin biosynthetic process|cristae formation|hemopoiesis|mitochondrial ATP synthesis coupled electron transport|mitochondrial respiratory chain complex I assembly|skeletal muscle tissue development	integral to membrane|mitochondrion	1-acylglycerophosphocholine O-acyltransferase activity				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGCACAACAGGGAGGTGCTGT	0.667											OREG0003602	type=REGULATORY REGION|Gene=DNASE1L1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	9	24					0	0	0.006214	0	0
DKC1	1736	broad.mit.edu	37	X	153997502	153997502	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:153997502G>A	uc004fmm.2	+	9	1042	c.832G>A	c.(832-834)GAT>AAT	p.D278N	DKC1_uc010nvf.2_Missense_Mutation_p.D278N	NM_001363	NP_001354	O60832	DKC1_HUMAN	dyskerin isoform 1	278					cell proliferation|pseudouridine synthesis|rRNA processing|telomere maintenance via telomerase	Cajal body|nucleolus|telomerase holoenzyme complex	protein binding|pseudouridine synthase activity|RNA binding|telomerase activity				0	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TAACCACAAGGATGAGAGTTA	0.433									Congenital_Dyskeratosis				76	175					0	0	0.003610	0	0
F8	2157	broad.mit.edu	37	X	154157927	154157927	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:154157927C>T	uc004fmt.2	-	14	4309	c.4138G>A	c.(4138-4140)GAG>AAG	p.E1380K		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1380	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GCCCCTTTCTCCTTCTCATTG	0.443													66	163					0	0	0.003610	0	0
BRCC3	79184	broad.mit.edu	37	X	154300608	154300608	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chrX:154300608G>A	uc004fna.2	+	2	223	c.130G>A	c.(130-132)GAT>AAT	p.D44N	MTCP1NB_uc004fmy.2_5'Flank|MTCP1_uc004fmz.2_5'Flank|BRCC3_uc011mzy.1_Missense_Mutation_p.D44N|BRCC3_uc011mzz.1_RNA|BRCC3_uc004fnb.2_Missense_Mutation_p.D44N	NM_024332	NP_077308	P46736	BRCC3_HUMAN	BRCA1/BRCA2-containing complex, subunit 3	44					double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|positive regulation of DNA repair|response to X-ray	BRCA1-A complex|BRISC complex|nuclear ubiquitin ligase complex	enzyme regulator activity|metal ion binding|metallopeptidase activity|polyubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(3)|ovary(1)|large_intestine(1)|breast(1)	6	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CTAGTTGAACGATGATACAAG	0.328													24	71					0	0	0.007291	0	0
PTPN14	5784	broad.mit.edu	37	1	214557049	214557051	+	In_Frame_Del	DEL	CCT	-	-			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr1:214557049_214557051delCCT	uc001hkk.1	-	13	2418_2420	c.2147_2149delAGG	c.(2146-2151)GAGGCT>GCT	p.E716del	PTPN14_uc010pty.1_In_Frame_Del_p.E617del	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	716	Poly-Glu.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GATTCTGGAGCCTCCTCCTCCTC	0.626													10	79	---	---	---	---					
USP35	57558	broad.mit.edu	37	11	77921051	77921053	+	In_Frame_Del	DEL	AGA	-	-			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr11:77921051_77921053delAGA	uc009yva.1	+	10	2396_2398	c.2150_2152delAGA	c.(2149-2154)GAGAAG>GAG	p.K718del	USP35_uc001oze.2_In_Frame_Del_p.K474del|USP35_uc001ozc.2_In_Frame_Del_p.K286del|USP35_uc010rsp.1_In_Frame_Del_p.K150del|USP35_uc001ozd.2_In_Frame_Del_p.K329del|USP35_uc001ozf.2_In_Frame_Del_p.K449del	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	718					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			gaggaagaagagaaggtggagaa	0.192													14	11	---	---	---	---					
EMG1	10436	broad.mit.edu	37	12	7080212	7080213	+	Splice_Site	INS	-	C	C	rs17857448		TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:7080212_7080213insC	uc001qsh.3	+	2	272	c.129_splice	c.e2+1	p.L43_splice	PHB2_uc001qsd.2_5'Flank|PHB2_uc010sft.1_5'Flank|PHB2_uc010sfu.1_5'Flank|EMG1_uc009zfo.2_RNA|EMG1_uc010sfv.1_RNA	NM_006331	NP_006322	Q92979	NEP1_HUMAN	ribosome biogenesis protein NEP1						ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding				0						GAGGCCGTAGTTTATTGTGGTG	0.569													6	9	---	---	---	---					
C12orf11	55726	broad.mit.edu	37	12	27089698	27089705	+	Frame_Shift_Del	DEL	AACAAACA	-	-			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr12:27089698_27089705delAACAAACA	uc001rhk.3	-	2	569_576	c.32_39delTGTTTGTT	c.(31-39)GTGTTTGTTfs	p.V11fs	C12orf11_uc010sjk.1_Intron|FGFR1OP2_uc001rhl.2_5'Flank|FGFR1OP2_uc001rhm.2_5'Flank|FGFR1OP2_uc001rhn.2_5'Flank	NM_018164	NP_060634	Q9NVM9	M89BB_HUMAN	hypothetical protein LOC55726	11_13					cell division|mitosis|regulation of mitotic cell cycle		protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	Colorectal(261;0.0847)					AGTGATCCACAACAAACACTGTTTTATG	0.365													8	27	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	107183650	107183650	+	RNA	DEL	C	-	-			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr14:107183650delC	uc010tyt.1	-	29		c.1907delG								Parts of antibodies, mostly variable regions.												0						GTCTCAGGGACCCCCCAGGCT	0.592													14	84	---	---	---	---					
SERPINB2	5055	broad.mit.edu	37	18	61564981	61564982	+	Frame_Shift_Ins	INS	-	A	A			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr18:61564981_61564982insA	uc010xeu.1	+	6	771_772	c.438_439insA	c.(436-441)CAGAAAfs	p.Q146fs	SERPINB2_uc002ljo.2_Frame_Shift_Ins_p.Q146fs|SERPINB2_uc010dqh.2_Frame_Shift_Ins_p.Q76fs|SERPINB2_uc002ljp.1_5'UTR|SERPINB2_uc002ljq.1_5'UTR	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	146_147					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	GACTCTGTCAGAAATATTACTC	0.376													39	52	---	---	---	---					
POFUT2	23275	broad.mit.edu	37	21	46707783	46707783	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr21:46707783delC	uc002zhc.2	-	1	29	c.4delG	c.(4-6)GCGfs	p.A2fs	POFUT2_uc002zhb.2_RNA|POFUT2_uc002zhd.2_Frame_Shift_Del_p.A2fs|POFUT2_uc011afp.1_Frame_Shift_Del_p.A2fs|POFUT2_uc011afq.1_Frame_Shift_Del_p.A2fs|LOC642852_uc002zhf.2_5'Flank	NM_133635	NP_598368	Q9Y2G5	OFUT2_HUMAN	protein O-fucosyltransferase 2 isoform C	2					fucose metabolic process	endoplasmic reticulum	peptide-O-fucosyltransferase activity				0				Colorectal(79;0.243)		CTGAGTGTCGCCATGGCCCCG	0.602													2	4	---	---	---	---					
LGALS2	3957	broad.mit.edu	37	22	37967935	37967935	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr22:37967935delC	uc003ata.2	-	2	122	c.10delG	c.(10-12)GAAfs	p.E4fs		NM_006498	NP_006489	P05162	LEG2_HUMAN	lectin, galactoside-binding, soluble, 2	4	Galectin.									breast(1)|skin(1)	2	Melanoma(58;0.0574)					ACCTCAAGTTCCCCCTGGGCC	0.547													27	49	---	---	---	---					
FRAS1	80144	broad.mit.edu	37	4	79373459	79373460	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr4:79373459_79373460delAA	uc003hlb.2	+	47	7154_7155	c.6714_6715delAA	c.(6712-6717)AGAATCfs	p.R2238fs		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2237_2238	CSPG 10.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGATCTACAGAATCACCAGACA	0.460													19	18	---	---	---	---					
TNXB	7148	broad.mit.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr6:32063513_32063514delAC	uc003nzl.2	-	3	2318_2319	c.2116_2117delGT	c.(2116-2118)GTAfs	p.V706fs		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	706	EGF-like 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GAAGCCCTCTACACACACACAC	0.668													11	342	---	---	---	---					
DPY19L2P2	349152	broad.mit.edu	37	7	102850713	102850713	+	Splice_Site	DEL	C	-	-			TCGA-FS-A1ZZ-06A-11D-A197-08	TCGA-FS-A1ZZ-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e371e0ec-1c86-4cc2-922a-ab7b07ebce63	24788398-b611-4cfa-877c-539ab2224df8	g.chr7:102850713delC	uc003vbh.3	-	19	3201	c.1010_splice	c.e19+1	p.R337_splice	DPY19L2P2_uc003vbg.3_Splice_Site|DPY19L2P2_uc010lit.2_Splice_Site	NR_003561				RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						GATATAATTACCTTAGATAAA	0.254													9	9	---	---	---	---					
